Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 231 of 279
Found at i:75691658 original size:46 final size:43
Alignment explanation
Indices: 75691590--75691720 Score: 129
Period size: 46 Copynumber: 2.9 Consensus size: 43
75691580 CTCCTAAACA
75691590 ATAATGCTCCTAAGTACAAGCTTAAATTGTTCATCCAAAATAAATG
1 ATAATGCTCCTAA--ACAAGCTTAAATTGTTCATCCAAAAT-AATG
* *
75691636 ATAATGCTCCTAAACATGAGCTTAAACTGTT-AGCACAAAATAATG
1 ATAATGCTCCTAAACA--AGCTTAAATTGTTCATC-CAAAATAATG
* * * *
75691681 ATCATACTCCTCAGCACAAGTTTAAATTGTTCATCCAAAA
1 ATAATGCTCCT-A-AACAAGCTTAAATTGTTCATCCAAAA
75691721 ACATATGCTC
Statistics
Matches: 71, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
44 3 0.04
45 31 0.44
46 34 0.48
47 3 0.04
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (43 bp):
ATAATGCTCCTAAACAAGCTTAAATTGTTCATCCAAAATAATG
Found at i:75691720 original size:45 final size:46
Alignment explanation
Indices: 75691590--75691720 Score: 140
Period size: 45 Copynumber: 2.9 Consensus size: 46
75691580 CTCCTAAACA
* *
75691590 ATAATGCTCCTAAGTACAAGCTTAAATTGTTCATCCAAAATAAATG
1 ATAATACTCCTAAGCACAAGCTTAAATTGTTCATCCAAAATAAATG
* * ** * *
75691636 ATAATGCTCCTAAACATGAGCTTAAACTGTT-AGCACAAAAT-AATG
1 ATAATACTCCTAAGCACAAGCTTAAATTGTTCATC-CAAAATAAATG
* * *
75691681 ATCATACTCCTCAGCACAAGTTTAAATTGTTCATCCAAAA
1 ATAATACTCCTAAGCACAAGCTTAAATTGTTCATCCAAAA
75691721 ACATATGCTC
Statistics
Matches: 68, Mismatches: 15, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
45 34 0.50
46 34 0.50
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (46 bp):
ATAATACTCCTAAGCACAAGCTTAAATTGTTCATCCAAAATAAATG
Found at i:75693779 original size:16 final size:15
Alignment explanation
Indices: 75693755--75693784 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
75693745 AACTATTTCA
75693755 TTACAAATTTCACTC
1 TTACAAATTTCACTC
75693770 TTACATAATTTCACT
1 TTACA-AATTTCACT
75693785 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:75694109 original size:50 final size:50
Alignment explanation
Indices: 75693996--75694271 Score: 306
Period size: 50 Copynumber: 5.5 Consensus size: 50
75693986 GTGGTATGCA
* * *
75693996 TAGTAGCCTGCACTTAATACTACACATGCGACC-AACAAT-TCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCT-GGTACACG
* **
75694045 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACG
* *** * * *
75694095 TAGTAGCCTGCACTTAGTACTACACATGTGA-TTGAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CCATCTGGTACACG
* *
75694146 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACG
* *** *
75694196 TAGTATCCTGCACTTAGTACTACACATGTGACCTAAACCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT-AACCATCTGGTACACG
*
75694247 TAGTAGCCTGCACATAGTACTACAC
1 TAGTAGCCTGCACTTAGTACTACAC
75694272 GTGTTCTCAC
Statistics
Matches: 189, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
49 31 0.16
50 84 0.44
51 73 0.39
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGGTACACG
Found at i:75694169 original size:101 final size:101
Alignment explanation
Indices: 75694045--75694226 Score: 310
Period size: 101 Copynumber: 1.8 Consensus size: 101
75694035 TCGGTACACG
*
75694045 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATACACGTAGTAGCCTGCACTT
75694110 AGTACTACACATGTGATTGAAGTTGTCGGGTACGCA
66 AGTACTACACATGTGATTGAAGTTGTCGGGTACGCA
* * ** *
75694146 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTATCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATACACGTAGTAGCCTGCACTT
75694211 AGTACTACACATGTGA
66 AGTACTACACATGTGA
75694227 CCTAAACCAT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 75 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATACACGTAGTAGCCTGCACTT
AGTACTACACATGTGATTGAAGTTGTCGGGTACGCA
Found at i:75694249 original size:101 final size:101
Alignment explanation
Indices: 75693996--75694271 Score: 299
Period size: 101 Copynumber: 2.8 Consensus size: 101
75693986 GTGGTATGCA
* * * * * *
75693996 TAGTAGCCTGCACTTAATACTACACATGCGAC--CAACAATTCGG-TACACGTAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACTGAAACCA-TCGGAAACACATAGTAGCCTGCAC
*
75694058 TTAGTACTACACACGTGACCTAACCATCTAATACACG
65 TTAGTACTACACACGCGACCTAACCATCTAATACACG
* **** ** *
75694095 TAGTAGCCTGCACTTAGTACTACACATGTGATTGAAGTTGTCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACTGAAACCATCGGAAACACATAGTAGCCTGCACT
* * **
75694160 TAGTACTACACATGCGACCTAACTATCTGGTACACG
66 TAGTACTACACACGCGACCTAACCATCTAATACACG
* **
75694196 TAGTATCCTGCACTTAGTACTACACATGTGACCT-AAACCATCTTAAACACATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CTGAAACCATCGGAAACACATAGTAGCCTGCAC
*
75694260 ATAGTACTACAC
65 TTAGTACTACAC
75694272 GTGTTCTCAC
Statistics
Matches: 146, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
99 29 0.20
100 4 0.03
101 112 0.77
102 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACTGAAACCATCGGAAACACATAGTAGCCTGCACT
TAGTACTACACACGCGACCTAACCATCTAATACACG
Found at i:75695901 original size:43 final size:43
Alignment explanation
Indices: 75695830--75695973 Score: 148
Period size: 43 Copynumber: 3.3 Consensus size: 43
75695820 GAAACCAGTT
** * ** *
75695830 TTCAAGATCAAGCCTCGACGACTATTGAAGCGAAC-ATCATTGA
1 TTCAAGATCAAATCTCGATGACCCTTGAAGCAAACTA-CATTGA
* * *
75695873 TTCAAGATCAAATCTCGATGACCCTTGAAGTAGACTAAATTGA
1 TTCAAGATCAAATCTCGATGACCCTTGAAGCAAACTACATTGA
* *
75695916 TTCAAGATCAAGTCTCGGTGACCCTTGAAGCAAACTACATT-A
1 TTCAAGATCAAATCTCGATGACCCTTGAAGCAAACTACATTGA
*
75695958 TCCTAAGATCAAATCT
1 TTC-AAGATCAAATCT
75695974 TGATAAACCT
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
42 3 0.04
43 79 0.95
44 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.26
Consensus pattern (43 bp):
TTCAAGATCAAATCTCGATGACCCTTGAAGCAAACTACATTGA
Found at i:75697747 original size:9 final size:9
Alignment explanation
Indices: 75697729--75697769 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
75697719 ATAAGTATAA
75697729 AATTAACCG
1 AATTAACCG
*
75697738 AATTACCCG
1 AATTAACCG
*
75697747 AATTAACCA
1 AATTAACCG
75697756 AATTAACCG
1 AATTAACCG
75697765 AATTA
1 AATTA
75697770 TTTGTATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.46, C:0.22, G:0.07, T:0.24
Consensus pattern (9 bp):
AATTAACCG
Found at i:75697804 original size:5 final size:6
Alignment explanation
Indices: 75697789--75697823 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
75697779 AATTATATGT
75697789 TTTTTA TTTTTA TTTTTA GTTTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA --TTTTTA TTTTTA TTT
75697824 ATCAAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 21 0.78
8 6 0.22
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:75699038 original size:31 final size:30
Alignment explanation
Indices: 75698990--75699048 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
75698980 TTATATATCG
75698990 TTATATTAAATTATTTAAATATAATTTATTA
1 TTATATTAAATTATTTAAA-ATAATTTATTA
* *
75699021 TTATATTTAAGTT-TTTAAAATATTTTAT
1 TTATA-TTAAATTATTTAAAATAATTTAT
75699049 CAATAATCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 8 0.32
31 11 0.44
32 6 0.24
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (30 bp):
TTATATTAAATTATTTAAAATAATTTATTA
Found at i:75705572 original size:13 final size:13
Alignment explanation
Indices: 75705554--75705578 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75705544 AATGAAGCAA
75705554 GACACGGCCGTGC
1 GACACGGCCGTGC
75705567 GACACGGCCGTG
1 GACACGGCCGTG
75705579 TGCACCCACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:75717273 original size:40 final size:40
Alignment explanation
Indices: 75717175--75717437 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
75717165 TCCTCGTTCA
* * * ** *
75717175 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
75717214 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
75717254 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
75717294 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
75717334 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
75717374 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
75717414 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
75717438 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:75725932 original size:4 final size:4
Alignment explanation
Indices: 75725923--75725949 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
75725913 CAAACACAAA
75725923 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
75725950 AACCTTGGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:75725995 original size:13 final size:13
Alignment explanation
Indices: 75725979--75726038 Score: 50
Period size: 13 Copynumber: 4.7 Consensus size: 13
75725969 ACCACCCTTG
75725979 TTGGCCACCCACC
1 TTGGCCACCCACC
*
75725992 TTGGCCACCTA-C
1 TTGGCCACCCACC
*** ***
75726004 TCCACCACCCTTG
1 TTGGCCACCCACC
75726017 TTGGCCACCCACC
1 TTGGCCACCCACC
75726030 TTGGCCACC
1 TTGGCCACC
75726039 TAAACCACCC
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
12 7 0.21
13 26 0.79
ACGTcount: A:0.15, C:0.50, G:0.15, T:0.20
Consensus pattern (13 bp):
TTGGCCACCCACC
Found at i:75726047 original size:38 final size:38
Alignment explanation
Indices: 75725951--75726040 Score: 180
Period size: 38 Copynumber: 2.4 Consensus size: 38
75725941 ATAAATAAAA
75725951 ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
1 ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
75725989 ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
1 ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
75726027 ACCTTGGCCACCTA
1 ACCTTGGCCACCTA
75726041 AACCACCCCA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.17, C:0.49, G:0.13, T:0.21
Consensus pattern (38 bp):
ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
Found at i:75726149 original size:27 final size:27
Alignment explanation
Indices: 75726119--75726180 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
75726109 TTTTTGGGGG
*
75726119 TGTTTTTTTTGTTTTTTGGAGGAGGTT
1 TGTTTTTTTTGTTTTTTGGAGGAGGGT
75726146 TGTTTTTTTTGTTTTTTGGAGGAGGGT
1 TGTTTTTTTTGTTTTTTGGAGGAGGGT
75726173 TGTTTTTT
1 TGTTTTTT
75726181 GTTTTGGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.06, C:0.00, G:0.29, T:0.65
Consensus pattern (27 bp):
TGTTTTTTTTGTTTTTTGGAGGAGGGT
Found at i:75726508 original size:3 final size:3
Alignment explanation
Indices: 75726502--75726545 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
75726492 TTTTATTTTT
* *
75726502 TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TT
75726546 TCTCATGTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
2 1 0.03
3 33 0.94
4 1 0.03
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:75726513 original size:9 final size:9
Alignment explanation
Indices: 75726492--75726546 Score: 60
Period size: 9 Copynumber: 6.2 Consensus size: 9
75726482 GAGAGCTTTG
75726492 TTTTATT-T
1 TTTTATTAT
75726500 TTTTATTAT
1 TTTTATTAT
*
75726509 TTTTACTAT
1 TTTTATTAT
75726518 TATTTA-TAT
1 T-TTTATTAT
*
75726527 TATTATTAT
1 TTTTATTAT
*
75726536 TATTATTAT
1 TTTTATTAT
75726545 TT
1 TT
75726547 CTCATGTATA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
8 10 0.24
9 27 0.66
10 4 0.10
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTTATTAT
Found at i:75726518 original size:12 final size:12
Alignment explanation
Indices: 75726494--75726546 Score: 72
Period size: 12 Copynumber: 4.5 Consensus size: 12
75726484 GAGCTTTGTT
75726494 TTATTTTT-TTA
1 TTATTTTTATTA
*
75726505 TTATTTTTACTA
1 TTATTTTTATTA
*
75726517 TTATTTATATTA
1 TTATTTTTATTA
*
75726529 TTATTATTATTA
1 TTATTTTTATTA
75726541 TTATTT
1 TTATTT
75726547 CTCATGTATA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
11 8 0.23
12 27 0.77
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (12 bp):
TTATTTTTATTA
Found at i:75726666 original size:83 final size:83
Alignment explanation
Indices: 75726517--75726669 Score: 186
Period size: 83 Copynumber: 1.8 Consensus size: 83
75726507 ATTTTTACTA
* * * *
75726517 TTATTTATATTATTATTATTATTATTATTTCTCATGTATATATTGTTATTTATATTATTATATTA
1 TTATTTATATTATTATTATCATTATTATTACTCATGTATATATTGTTATTTATACTACTATATTA
75726582 TATATGCCCTCTCCATAT
66 TATATGCCCTCTCCATAT
* * * *
75726600 TTATTTATATTATTATTATCATTATTGTTACTTC-TGT-TAT-TTTTTATTTCTGACTACTATTT
1 TTATTTATATTATTATTATCATTATTATTAC-TCATGTATATATTGTTATTTAT-ACTACTA-TA
75726662 TTATATAT
63 TTATATAT
75726670 ATATATTATT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
81 9 0.15
82 8 0.14
83 40 0.68
84 2 0.03
ACGTcount: A:0.27, C:0.09, G:0.04, T:0.60
Consensus pattern (83 bp):
TTATTTATATTATTATTATCATTATTATTACTCATGTATATATTGTTATTTATACTACTATATTA
TATATGCCCTCTCCATAT
Found at i:75726830 original size:18 final size:19
Alignment explanation
Indices: 75726794--75726850 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 19
75726784 ACTATTACTA
*
75726794 TTATATATTAGTGTATATTT
1 TTATATA-TAGTATATATTT
*
75726814 TTATGTATA-TATATA-TT
1 TTATATATAGTATATATTT
75726831 TTATATATAGTAT-TATTT
1 TTATATATAGTATATATTT
75726849 TT
1 TT
75726851 TATTACTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
17 12 0.38
18 12 0.38
19 2 0.06
20 6 0.19
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (19 bp):
TTATATATAGTATATATTT
Found at i:75728295 original size:21 final size:21
Alignment explanation
Indices: 75728258--75728300 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
75728248 TGCACATAGG
*
75728258 CGTGTGAGGTAGTCACACAGC
1 CGTGTGAGGTAGCCACACAGC
*
75728279 CGTGTG-GGATAGCCACATAGC
1 CGTGTGAGG-TAGCCACACAGC
75728300 C
1 C
75728301 ATGTTTGGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.23, C:0.26, G:0.33, T:0.19
Consensus pattern (21 bp):
CGTGTGAGGTAGCCACACAGC
Found at i:75738219 original size:18 final size:18
Alignment explanation
Indices: 75738198--75738233 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
75738188 TTAAAAGTGT
* *
75738198 TTATGAGTATAAATATAA
1 TTATAAGTACAAATATAA
75738216 TTATAAGTACAAATATAA
1 TTATAAGTACAAATATAA
75738234 ATCATAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.36
Consensus pattern (18 bp):
TTATAAGTACAAATATAA
Found at i:75740332 original size:29 final size:30
Alignment explanation
Indices: 75740266--75740332 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
75740256 TGTTAATTTA
75740266 ATTTATTTAATTAAAAATCTATTTAAAAGGAT
1 ATTTATTTAATTAAAAATC--TTTAAAAGGAT
*
75740298 ATTTTATTTAAATTAAAAA-C-TTAAAGGGAT
1 A-TTTATTT-AATTAAAAATCTTTAAAAGGAT
75740328 ATTTA
1 ATTTA
75740333 ATCTCAGGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
29 4 0.12
30 10 0.31
32 1 0.03
33 8 0.25
34 9 0.28
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.43
Consensus pattern (30 bp):
ATTTATTTAATTAAAAATCTTTAAAAGGAT
Found at i:75742671 original size:37 final size:36
Alignment explanation
Indices: 75742596--75742671 Score: 82
Period size: 37 Copynumber: 2.1 Consensus size: 36
75742586 TTTTAATTTG
* ** *
75742596 ATAATGTTTTATAGTTTTTAACTTTTTATATTTCAT
1 ATAATGTTTTATAGTTTTTAACTTTATATAACTAAT
*
75742632 ATAATGTTTTTATAATTTTTTAA-TTTATATAACTAAT
1 ATAATG-TTTTAT-AGTTTTTAACTTTATATAACTAAT
75742669 ATA
1 ATA
75742672 TTATATTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
36 6 0.18
37 19 0.58
38 8 0.24
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (36 bp):
ATAATGTTTTATAGTTTTTAACTTTATATAACTAAT
Found at i:75747537 original size:22 final size:23
Alignment explanation
Indices: 75747509--75747561 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
75747499 CCAAAACCTG
75747509 TTTAAAGAC-ATGTACACCCCTC
1 TTTAAAGACTATGTACACCCCTC
* *
75747531 TTTAAAGCCTTATGTATACCCCTC
1 TTTAAAGAC-TATGTACACCCCTC
*
75747555 TCTAAAG
1 TTTAAAG
75747562 CTTTCCAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 8 0.31
24 18 0.69
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.32
Consensus pattern (23 bp):
TTTAAAGACTATGTACACCCCTC
Found at i:75750766 original size:23 final size:22
Alignment explanation
Indices: 75750736--75750780 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
75750726 CTAAAAAAAC
*
75750736 CAAAACTTGCTAGAATAGCAGA
1 CAAAACTTGCTAGAACAGCAGA
*
75750758 CAAATACTTGCTAGCACAGCAGA
1 CAAA-ACTTGCTAGAACAGCAGA
75750781 TTAACTCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (22 bp):
CAAAACTTGCTAGAACAGCAGA
Found at i:75755642 original size:183 final size:183
Alignment explanation
Indices: 75755334--75755701 Score: 646
Period size: 183 Copynumber: 2.0 Consensus size: 183
75755324 TCATTCAATT
75755334 TTGTAATTTAAATAATAAAATAAATCCATTTCATGCAATTTGGTCATTTCTAACATTTTTACAAA
1 TTGTAATTTAAATAATAAAATAAATCCATTTCATGCAATTTGGTCATTTCTAACATTTTTACAAA
* *
75755399 ATTACCCATAAAGTTTTACTTTTATTCAATTTAGTCCCTAAGCCTAAAATATGCAAATTAGCCAT
66 ATTACCCATAAAGTTTTACTTTTATTCAATTTAATCCCTAAGCCCAAAATATGCAAATTAGCCAT
* *
75755464 GCTTAATGAATATTCATATATGTTTTCCTCCTCCTCCTCTCCATTCCACATCC
131 GCTAAATGAATATTCATATATGTTTTCCTCCTCCTCCACTCCATTCCACATCC
*
75755517 TTGTAATTTAAATAATAAAATTAATCCATTTCATGCAATTTGGTCATTTCTAACATTTTTACAAA
1 TTGTAATTTAAATAATAAAATAAATCCATTTCATGCAATTTGGTCATTTCTAACATTTTTACAAA
* * * *
75755582 ATTGCCCATAAAGTTTTCCTTTTATTCAATTTAATCCCTGAGCCCAAACTATGCAAATTAGCCAT
66 ATTACCCATAAAGTTTTACTTTTATTCAATTTAATCCCTAAGCCCAAAATATGCAAATTAGCCAT
*
75755647 GCTAAATGAATATTCATATATGTTTTCCTCCTCCTCCACTCCATTCCATATCC
131 GCTAAATGAATATTCATATATGTTTTCCTCCTCCTCCACTCCATTCCACATCC
75755700 TT
1 TT
75755702 AATGTATCTA
Statistics
Matches: 175, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
183 175 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (183 bp):
TTGTAATTTAAATAATAAAATAAATCCATTTCATGCAATTTGGTCATTTCTAACATTTTTACAAA
ATTACCCATAAAGTTTTACTTTTATTCAATTTAATCCCTAAGCCCAAAATATGCAAATTAGCCAT
GCTAAATGAATATTCATATATGTTTTCCTCCTCCTCCACTCCATTCCACATCC
Found at i:75756125 original size:11 final size:11
Alignment explanation
Indices: 75756109--75756167 Score: 82
Period size: 11 Copynumber: 5.2 Consensus size: 11
75756099 GATTATATAC
75756109 TAATAAAATAA
1 TAATAAAATAA
75756120 TAATAAAATAA
1 TAATAAAATAA
75756131 TAATAAAATATA
1 TAATAAAATA-A
* *
75756143 TTATTAAAATAT
1 -TAATAAAATAA
75756155 TAATAAAATAA
1 TAATAAAATAA
75756166 TA
1 TA
75756168 TTTATCTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
11 32 0.76
12 1 0.02
13 9 0.21
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:75756715 original size:30 final size:30
Alignment explanation
Indices: 75756681--75756742 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
75756671 TTTGTAAGTA
*
75756681 AAACAAGTGAGTCACTTGGTTTTACAAACT
1 AAACAAGTGAGTCACTTGGTCTTACAAACT
75756711 AAACAAGTGAGTCACTTGGTCTTACAAACT
1 AAACAAGTGAGTCACTTGGTCTTACAAACT
75756741 AA
1 AA
75756743 GTTTTCAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (30 bp):
AAACAAGTGAGTCACTTGGTCTTACAAACT
Found at i:75760468 original size:20 final size:20
Alignment explanation
Indices: 75760445--75760498 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
75760435 TTGTTATATT
*
75760445 TTATAGTTTT-TTTGGATTAA
1 TTATA-TTTTATTTGAATTAA
75760465 TTATATTTTATTTGAATTATA
1 TTATATTTTATTTGAATTA-A
*
75760486 TTTTTATTTTATT
1 -TTATATTTTATT
75760499 ATTTTTAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 13 0.45
21 1 0.03
22 11 0.38
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (20 bp):
TTATATTTTATTTGAATTAA
Found at i:75760500 original size:16 final size:17
Alignment explanation
Indices: 75760463--75760494 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75760453 TTTTTGGATT
75760463 AATTATA-TTTTATTTG
1 AATTATATTTTTATTTG
75760479 AATTATATTTTTATTT
1 AATTATATTTTTATTT
75760495 TATTATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (17 bp):
AATTATATTTTTATTTG
Found at i:75769073 original size:17 final size:19
Alignment explanation
Indices: 75769037--75769093 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
75769027 AATTATAAAT
* *
75769037 TTAAAATATAAATATTTAA
1 TTAAAAGATAAATATATAA
75769056 TTAAAA-AT-AATATATAA
1 TTAAAAGATAAATATATAA
75769073 -TAAAAGATAAAATATATAA
1 TTAAAAGAT-AAATATATAA
75769092 TT
1 TT
75769094 TAAGTTAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
16 5 0.15
17 10 0.30
18 2 0.06
19 15 0.45
20 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
TTAAAAGATAAATATATAA
Found at i:75775136 original size:28 final size:28
Alignment explanation
Indices: 75775091--75775149 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
75775081 AACTTCAACA
*
75775091 TTTTCTCTTTCATCTTCTCTGCCATCTC
1 TTTTCTCTTTCATCTTCTCTGCCATATC
* * *
75775119 TTTTCTCTTTCGTTTTCTCTGCTATATC
1 TTTTCTCTTTCATCTTCTCTGCCATATC
75775147 TTT
1 TTT
75775150 CATTTTCCCC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.07, C:0.29, G:0.05, T:0.59
Consensus pattern (28 bp):
TTTTCTCTTTCATCTTCTCTGCCATATC
Found at i:75775732 original size:14 final size:16
Alignment explanation
Indices: 75775701--75775732 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
75775691 TGGAAGAGAA
75775701 GATAAAATTGTACAAG
1 GATAAAATTGTACAAG
75775717 GATAAAA-TGT-CAAG
1 GATAAAATTGTACAAG
75775731 GA
1 GA
75775733 ACAAAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 3 0.19
16 7 0.44
ACGTcount: A:0.50, C:0.06, G:0.22, T:0.22
Consensus pattern (16 bp):
GATAAAATTGTACAAG
Found at i:75776038 original size:45 final size:45
Alignment explanation
Indices: 75775989--75776075 Score: 131
Period size: 45 Copynumber: 1.9 Consensus size: 45
75775979 AATATAAATT
*
75775989 GTCCATCAAAATACAACCAT-TAGAATGATTCAACAAAATAAATAC
1 GTCCATCAAAATACAACCATCTA-AATGATCCAACAAAATAAATAC
* *
75776034 GTCCATCAAAATACATCTATCTAAATGATCCAACAAAATAAA
1 GTCCATCAAAATACAACCATCTAAATGATCCAACAAAATAAA
75776076 ACCATCCATC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
45 36 0.95
46 2 0.05
ACGTcount: A:0.51, C:0.21, G:0.06, T:0.23
Consensus pattern (45 bp):
GTCCATCAAAATACAACCATCTAAATGATCCAACAAAATAAATAC
Found at i:75776084 original size:45 final size:45
Alignment explanation
Indices: 75775990--75776085 Score: 124
Period size: 45 Copynumber: 2.1 Consensus size: 45
75775980 ATATAAATTG
* *
75775990 TCCATCAAAATACAACCATTAGAATGATTCAACAAAATAAATACG
1 TCCATCAAAATACAACCATTAGAATGATCCAACAAAATAAATACA
* *
75776035 TCCATCAAAATACATCTATCTA-AATGATCCAACAAAATAAA-ACCA
1 TCCATCAAAATACAACCAT-TAGAATGATCCAACAAAATAAATA-CA
75776080 TCCATC
1 TCCATC
75776086 TTATGATAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
44 1 0.02
45 42 0.93
46 2 0.04
ACGTcount: A:0.49, C:0.24, G:0.04, T:0.23
Consensus pattern (45 bp):
TCCATCAAAATACAACCATTAGAATGATCCAACAAAATAAATACA
Found at i:75780511 original size:48 final size:47
Alignment explanation
Indices: 75780450--75780663 Score: 209
Period size: 48 Copynumber: 4.5 Consensus size: 47
75780440 TATGAGAGTC
* *
75780450 AGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGAGATATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGAGATA-AAGCT
* * * * * *
75780498 AATGTAAGACATGTCTGGGACATGCATCGGCATTGAGACA-AGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGAGATAAAGCT
* * *
75780544 AGTGTAAGACATGTCTGGAACATGCATAGGCCTCGAGAGATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGAGATA-AAGCT
* * * * * *
75780592 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGATGTGCT--AGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGA-GAGATAAAGCT
75780639 AGTGTAAGACTATGTCTGGGACATG
1 AGTGTAAGAC-ATGTCTGGGACATG
75780664 ACGTTGGCAT
Statistics
Matches: 136, Mismatches: 25, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
46 37 0.27
47 16 0.12
48 71 0.52
49 9 0.07
50 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGAGATAAAGCT
Found at i:75780548 original size:94 final size:95
Alignment explanation
Indices: 75780450--75780621 Score: 267
Period size: 94 Copynumber: 1.8 Consensus size: 95
75780440 TATGAGAGTC
* *
75780450 AGTGTAAGACATGTCTAGG-ACATGCATCGACCTCGAGAGATATAAGCCAATGTAAGACATGTCT
1 AGTGTAAGACATGTCT-GGAACATGCATAGACCTCGAGAGATACAAGCCAATGTAAGACATGTCT
75780514 GGGACAT-GCATCGGCATTGAGACAAGAGCT
65 GGGACATGGCATCGGCATTGAGACAAGAGCT
* * * *
75780544 AGTGTAAGACATGTCTGGAACATGCATAGGCCTCGAGAGATACAAGCTAGTGTAAGACCTGTCTG
1 AGTGTAAGACATGTCTGGAACATGCATAGACCTCGAGAGATACAAGCCAATGTAAGACATGTCTG
75780609 GGACATGGCATCG
66 GGACATGGCATCG
75780622 ACTTTGATGT
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
93 2 0.03
94 62 0.89
95 6 0.09
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (95 bp):
AGTGTAAGACATGTCTGGAACATGCATAGACCTCGAGAGATACAAGCCAATGTAAGACATGTCTG
GGACATGGCATCGGCATTGAGACAAGAGCT
Found at i:75780561 original size:46 final size:48
Alignment explanation
Indices: 75780450--75780621 Score: 213
Period size: 48 Copynumber: 3.6 Consensus size: 48
75780440 TATGAGAGTC
* * * *
75780450 AGTGTAAGACATGTCTAGGACATGCATCGACCTCGAGAGATATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGATACAAGCT
* * * * *
75780498 AATGTAAGACATGTCTGGGACATGCATCGGCATTGAGACA-A-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGATACAAGCT
* *
75780544 AGTGTAAGACATGTCTGGAACATGCATAGGCCTCGAGAGATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGATACAAGCT
*
75780592 AGTGTAAGACCTGTCTGGGACATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
75780622 ACTTTGATGT
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
46 37 0.36
47 2 0.02
48 59 0.57
49 5 0.05
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAGATACAAGCT
Found at i:75788282 original size:13 final size:13
Alignment explanation
Indices: 75788243--75788289 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
75788233 TGGACACTGC
75788243 ACATACATAATAT
1 ACATACATAATAT
75788256 A-A-ACTATAATAT
1 ACATAC-ATAATAT
*
75788268 ACATACATGATAT
1 ACATACATAATAT
75788281 ACATACATA
1 ACATACATA
75788290 TTTTAAACAG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
11 2 0.07
12 9 0.31
13 16 0.55
14 2 0.07
ACGTcount: A:0.53, C:0.15, G:0.02, T:0.30
Consensus pattern (13 bp):
ACATACATAATAT
Found at i:75788328 original size:29 final size:30
Alignment explanation
Indices: 75788293--75788349 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
75788283 ATACATATTT
**
75788293 TAAACAGTGCTAAAC-ATAAGATACATACA
1 TAAACAGTAATAAACAATAAGATACATACA
*
75788322 TAAACAGTAATAAACAATAATATACATA
1 TAAACAGTAATAAACAATAAGATACATA
75788350 AAAGTAGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.56, C:0.14, G:0.07, T:0.23
Consensus pattern (30 bp):
TAAACAGTAATAAACAATAAGATACATACA
Found at i:75788374 original size:27 final size:26
Alignment explanation
Indices: 75788315--75788429 Score: 80
Period size: 26 Copynumber: 4.4 Consensus size: 26
75788305 AACATAAGAT
75788315 ACATACATAAACAGTAATAAACAATA
1 ACATACATAAACAGTAATAAACAATA
* * *
75788341 ATATACATAAA-AGTAGTATACCATATA
1 ACATACATAAACAGTAATA-AACA-ATA
75788368 ACATACATACATACA-TACATACATAC-AT-
1 ACATACATA-A-ACAGTA-ATA-A-ACAATA
* *
75788396 ACATACAT-AATAGTAATATAC-ATA
1 ACATACATAAACAGTAATAAACAATA
75788420 ACATACATAA
1 ACATACATAA
75788430 TATACATACA
Statistics
Matches: 70, Mismatches: 9, Indels: 21
0.70 0.09 0.21
Matches are distributed among these distances:
23 4 0.06
24 8 0.11
25 12 0.17
26 16 0.23
27 11 0.16
28 9 0.13
29 5 0.07
30 4 0.06
31 1 0.01
ACGTcount: A:0.55, C:0.17, G:0.03, T:0.25
Consensus pattern (26 bp):
ACATACATAAACAGTAATAAACAATA
Found at i:75788377 original size:4 final size:4
Alignment explanation
Indices: 75788368--75788542 Score: 90
Period size: 4 Copynumber: 45.2 Consensus size: 4
75788358 ATACCATATA
* *
75788368 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A-AT A-GT AATAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT -ACAT
*
75788415 ACAT AACAT ACAT AATAT ACAT ACATT A-A- ACAT AACAT ACAT ACAT
1 ACAT -ACAT ACAT -ACAT ACAT ACA-T ACAT ACAT -ACAT ACAT ACAT
* * * *
75788461 ATAT A-A- ACAGT A-AT AAAT ATA- ACAT ACAT A-AT A-A- AAAT ACAT
1 ACAT ACAT ACA-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
75788503 A-AG A-AT A-AT ATACC ACAT AACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACA-T ACAT -ACAT ACAT ACAT ACAT ACAT A
75788543 ATAATAATAT
Statistics
Matches: 139, Mismatches: 14, Indels: 36
0.74 0.07 0.19
Matches are distributed among these distances:
2 3 0.02
3 23 0.17
4 92 0.66
5 21 0.15
ACGTcount: A:0.55, C:0.17, G:0.02, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:75788394 original size:77 final size:75
Alignment explanation
Indices: 75788313--75788553 Score: 207
Period size: 77 Copynumber: 3.2 Consensus size: 75
75788303 TAAACATAAG
75788313 ATACATACATA-AACAGTAATAAACAATAATATACATAAAAGTAGTATACCATATAACATACATA
1 ATACATACATATAACAGTAATAAACAATAA-ATACATAAAA-TA-TATACCATATAACATACATA
75788377 CATACATACATAC
63 CATACATACATAC
* * * *
75788390 ATACATACATACATAATAGTAATATAC-ATAACATACATAATATACATA-CAT-TAAACATAACA
1 ATACATACAT--ATAACAGTAATAAACAATAA-ATACATAAAATATATACCATAT-AACAT-ACA
*
75788452 TACATACATATATAAAC
61 TACATACATACAT--AC
* * *
75788469 AGTA-ATAAATATAACA-TACAT-AATAA-AAATACATAAGAATAATATACCACATAACATACAT
1 A-TACATACATATAACAGTA-ATAAACAATAAATACATAA-AAT-ATATACCATATAACATACAT
75788530 ACATACATACATA-
62 ACATACATACATAC
75788543 ATA-ATA-ATATA
1 ATACATACATATA
75788554 CATAACATGC
Statistics
Matches: 136, Mismatches: 14, Indels: 33
0.74 0.08 0.18
Matches are distributed among these distances:
72 5 0.04
73 5 0.04
74 1 0.01
75 10 0.07
76 15 0.11
77 55 0.40
78 9 0.07
79 23 0.17
80 13 0.10
ACGTcount: A:0.56, C:0.15, G:0.02, T:0.26
Consensus pattern (75 bp):
ATACATACATATAACAGTAATAAACAATAAATACATAAAATATATACCATATAACATACATACAT
ACATACATAC
Found at i:75788460 original size:138 final size:135
Alignment explanation
Indices: 75788303--75788578 Score: 337
Period size: 138 Copynumber: 2.0 Consensus size: 135
75788293 TAAACAGTGC
* * *
75788303 TAAACATAAGATACATAC-ATAAACAGTAATAAACAATAATATACATAA-AAGTAGTATACCATA
1 TAAACATAACATACATACAATAAACAGTAATAAA-AATAACATACATAATAA--A-AATA-CATA
* *
75788366 TA-ACATACATACA-TACAT-ACATACATACATACATACATAATAGTAATATACATAACATACAT
61 -AGA-ATA-ATACACCACATAACATACATACATACATACATAATAATAATATACATAACATACAT
75788428 AATATACATACAT
123 AATATACATACAT
*
75788441 TAAACATAACATACATACATATATAAACAGTAATAAATATAACATACATAATAAAAATACATAAG
1 TAAACATAACATACATAC--A-ATAAACAGTAATAAAAATAACATACATAATAAAAATACATAAG
* * *
75788506 AATAATATACCACATAACATACATACATACATACATAATAATAATATACATAACATGCATAATGT
63 AATAATACACCACATAACATACATACATACATACATAATAATAATATACATAACATACATAATAT
75788571 ACATACAT
128 ACATACAT
75788579 AACAGAATAC
Statistics
Matches: 121, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
136 4 0.03
137 8 0.07
138 76 0.63
139 3 0.02
140 1 0.01
141 12 0.10
142 17 0.14
ACGTcount: A:0.55, C:0.16, G:0.03, T:0.26
Consensus pattern (135 bp):
TAAACATAACATACATACAATAAACAGTAATAAAAATAACATACATAATAAAAATACATAAGAAT
AATACACCACATAACATACATACATACATACATAATAATAATATACATAACATACATAATATACA
TACAT
Found at i:75788488 original size:53 final size:53
Alignment explanation
Indices: 75788365--75788558 Score: 135
Period size: 53 Copynumber: 3.8 Consensus size: 53
75788355 AGTATACCAT
* *
75788365 ATAACATACAT-ACATACATACATACATACATACATACATAATAGTAATATAC
1 ATAACAAACATAACATACATACATACATACATACATACATAATAGTAATAAAC
* *
75788417 ATAACATACATAATATACATACATTA-A-ACATAACATACATACATA-T-ATAAAC
1 ATAACAAACATAACATACATACA-TACATACAT-ACATACATA-ATAGTAATAAAC
* * * * * *
75788469 AGTAATAAATATAACATACATA-ATA-A-AAATACATA-AGAATAAT-ATACCAC
1 A-TAACAAACATAACATACATACATACATACATACATACATAATAGTAATA-AAC
* *
75788519 ATAACATACAT-ACATACATACATA-ATA-ATAATATACATAA
1 ATAACAAACATAACATACATACATACATACAT-ACATACATAA
75788559 CATGCATAAT
Statistics
Matches: 117, Mismatches: 14, Indels: 23
0.76 0.09 0.15
Matches are distributed among these distances:
48 12 0.10
49 19 0.16
50 13 0.11
51 9 0.08
52 22 0.19
53 37 0.32
54 5 0.04
ACGTcount: A:0.56, C:0.16, G:0.02, T:0.26
Consensus pattern (53 bp):
ATAACAAACATAACATACATACATACATACATACATACATAATAGTAATAAAC
Found at i:75788501 original size:62 final size:60
Alignment explanation
Indices: 75788384--75788587 Score: 166
Period size: 62 Copynumber: 3.5 Consensus size: 60
75788374 ATACATACAT
* * * *
75788384 ACATACATACATACATACATAATAGTAATATACATAACATACATAATATACATACATTAA
1 ACATACATACATACATACATAACAGTAATAAACATAACATACATAATAAAAATACATTAA
* *
75788444 ACATAACATACATACATATATAAACAGTAATAAATATAACATACATAATAAAAATACA-TAA
1 ACAT-ACATACATACATACAT-AACAGTAATAAACATAACATACATAATAAAAATACATTAA
*
75788505 GA-ATA-AT--ATAC-CACATAACA-TACAT--ACAT-ACATACATAATAATAATATACA-T-A
1 -ACATACATACATACATACATAACAGTA-ATAAACATAACATACATAATAA-AA-ATACATTAA
*
75788558 ACATGCATA-ATGTACATACATAACAG-AATA
1 ACATACATACA--TACATACATAACAGTAATA
75788588 CATAAAGATA
Statistics
Matches: 119, Mismatches: 11, Indels: 30
0.74 0.07 0.19
Matches are distributed among these distances:
52 14 0.12
53 8 0.07
54 10 0.08
55 7 0.06
56 3 0.03
57 9 0.08
58 9 0.08
59 2 0.02
60 5 0.04
61 20 0.17
62 32 0.27
ACGTcount: A:0.55, C:0.16, G:0.03, T:0.26
Consensus pattern (60 bp):
ACATACATACATACATACATAACAGTAATAAACATAACATACATAATAAAAATACATTAA
Found at i:75788546 original size:24 final size:26
Alignment explanation
Indices: 75788365--75788461 Score: 101
Period size: 29 Copynumber: 3.6 Consensus size: 26
75788355 AGTATACCAT
75788365 ATAACATACATACATACATACAT-AC
1 ATAACATACATACATACATACATAAC
*
75788390 AT-ACATACATACATA-ATAGTAATATAC
1 ATAACATACATACATACATA--CATA-AC
*
75788417 ATAACATACATAATATACATACATTAAAC
1 ATAACATACAT-ACATACATACA-T-AAC
75788446 ATAACATACATACATA
1 ATAACATACATACATA
75788462 TATAAACAGT
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
23 3 0.05
24 13 0.22
25 4 0.07
27 4 0.07
28 13 0.22
29 18 0.31
30 4 0.07
ACGTcount: A:0.54, C:0.19, G:0.01, T:0.27
Consensus pattern (26 bp):
ATAACATACATACATACATACATAAC
Found at i:75794338 original size:32 final size:32
Alignment explanation
Indices: 75794302--75794406 Score: 174
Period size: 32 Copynumber: 3.3 Consensus size: 32
75794292 AACTTACCTG
* * * *
75794302 AAATCATGCCACAAACATTTAACTAACTTCTA
1 AAATCATGTCACAAACACTTAACTTACTCCTA
75794334 AAATCATGTCACAAACACTTAACTTACTCCTA
1 AAATCATGTCACAAACACTTAACTTACTCCTA
75794366 AAATCATGTCACAAACACTTAACTTACTCCTA
1 AAATCATGTCACAAACACTTAACTTACTCCTA
75794398 AAATCATGT
1 AAATCATGT
75794407 GAAAAAAATC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 69 1.00
ACGTcount: A:0.42, C:0.26, G:0.04, T:0.29
Consensus pattern (32 bp):
AAATCATGTCACAAACACTTAACTTACTCCTA
Found at i:75796287 original size:67 final size:68
Alignment explanation
Indices: 75796203--75796356 Score: 204
Period size: 67 Copynumber: 2.3 Consensus size: 68
75796193 GCAGTTAGTA
* * * * *
75796203 GACCTACACTCCTAGCTGACATTATAAGAGCTCGTAGAGCTAA-CTCGCAGCT-CTACTACAACT
1 GACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGCTAAGCTCGCAGCTCCAAC-ACAACT
75796266 AGCG
65 AGCG
* * *
75796270 GACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTTGCAGCTCCAACACAGCTA
1 GACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGCTAAGCTCGCAGCTCCAACACAACTA
*
75796335 GTG
66 GCG
75796338 GACCTACGCTCCCAGCTGA
1 GACCTACGCTCCCAGCTGA
75796357 TGACATAAAG
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
67 38 0.50
68 35 0.46
69 3 0.04
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (68 bp):
GACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGCTAAGCTCGCAGCTCCAACACAACTA
GCG
Found at i:75796353 original size:68 final size:68
Alignment explanation
Indices: 75796053--75796356 Score: 237
Period size: 68 Copynumber: 4.5 Consensus size: 68
75796043 GCAATGATGG
* * * *
75796053 AACACAACTAGCAGACCTAAGCTCTCAGCTGACATTATAAGAGCTCATAGAGTTAAG-TTCGCAG
1 AACACAACTAGTAGACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTT-GCAG
75796117 CTCC
65 CTCC
* ** * * * *
75796121 AACACAACTAGTAGACCTACACTCTTAGCTGATC-TCATAAAGGTTTTC-T-G-GTTTAAGATTG
1 AACACAACTAGTAGACCTACGCTCCCAGCTGA-CATTATAAAAG--CTCATAGAG-TTAAGCTTG
* * *
75796182 TAACCTCT
62 -CAGCTCC
** * * * * * *
75796190 AA-AGCAGTTAGTAGACCTACACTCCTAGCTGACATTATAAGAGCTCGTAGAGCTAA-CTCGCAG
1 AACA-CAACTAGTAGACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTTGCAG
75796253 CT-C
65 CTCC
* **
75796256 TACTACAACTAGCGGACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTTGCAG
1 AAC-ACAACTAGTAGACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTTGCAG
75796321 CTCC
65 CTCC
* *
75796325 AACACAGCTAGTGGACCTACGCTCCCAGCTGA
1 AACACAACTAGTAGACCTACGCTCCCAGCTGA
75796357 TGACATAAAG
Statistics
Matches: 183, Mismatches: 38, Indels: 30
0.73 0.15 0.12
Matches are distributed among these distances:
66 1 0.01
67 49 0.27
68 82 0.45
69 48 0.26
70 3 0.02
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (68 bp):
AACACAACTAGTAGACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTTGCAGC
TCC
Found at i:75796413 original size:204 final size:204
Alignment explanation
Indices: 75796056--75796439 Score: 536
Period size: 204 Copynumber: 1.9 Consensus size: 204
75796046 ATGATGGAAC
* *
75796056 ACAACTAGCAGACCTAAGCTCTCAGCTGACATTATAAGAGCTCATAGAGTTAAGTTCGCAGCTCC
1 ACAACTAGCAGACCTAAGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGTTCGCAGCTCC
** * * * * * *
75796121 AACACAACTAGTAGACCTACACTCTTAGCTGATCTCATAAAGGTTTTCTGGTTTAAGATTGTAAC
66 AACACAACTAGTAGACCTACACTCCCAGCTGATCACATAAAGGGTTACCGATTTAAGATCGTAAC
* ** * *
75796186 CTCTAAAGCAGTTAGTAGACCTACACTCCTAGCTGACATTATAAGAGCTCGTAGAGCTAACTCGC
131 CTCCAAAGCAGCCAGCAGACCTACACTCCTAGCTGACATTATAAAAGCTCGTAGAGCTAACTCGC
75796251 AGCTCTACT
196 AGCTCTACT
* *
75796260 ACAACTAGCGGACCTACGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGCTT-GCAGCTC
1 ACAACTAGCAGACCTAAGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAG-TTCGCAGCTC
* * * * *
75796324 CAACACAGCTAGTGGACCTACGCTCCCAGCTGATGACATAAAGGGTTACCGATTTAGGATCGTAA
65 CAACACAACTAGTAGACCTACACTCCCAGCTGATCACATAAAGGGTTACCGATTTAAGATCGTAA
* *
75796389 CCTCCAAAGCAGCCAGCGGACCTACACTCCTAGCTGATATTATAAAAGCTC
130 CCTCCAAAGCAGCCAGCAGACCTACACTCCTAGCTGACATTATAAAAGCTC
75796440 ACAGAGTTAA
Statistics
Matches: 155, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
204 153 0.99
205 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (204 bp):
ACAACTAGCAGACCTAAGCTCCCAGCTGACATTATAAAAGCTCATAGAGTTAAGTTCGCAGCTCC
AACACAACTAGTAGACCTACACTCCCAGCTGATCACATAAAGGGTTACCGATTTAAGATCGTAAC
CTCCAAAGCAGCCAGCAGACCTACACTCCTAGCTGACATTATAAAAGCTCGTAGAGCTAACTCGC
AGCTCTACT
Found at i:75799867 original size:29 final size:28
Alignment explanation
Indices: 75799835--75799892 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
75799825 AATTTTTTTT
*
75799835 AATAATTTAAATTGATTTTAATTATTAAA
1 AATAATTTAAATTAATTTTAATTA-TAAA
* * *
75799864 AATATTTTTATTTAATTTTAATTATAAA
1 AATAATTTAAATTAATTTTAATTATAAA
75799892 A
1 A
75799893 TATATTAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (28 bp):
AATAATTTAAATTAATTTTAATTATAAA
Found at i:75799904 original size:29 final size:29
Alignment explanation
Indices: 75799849--75799904 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
75799839 ATTTAAATTG
**
75799849 ATTTTAATTATTAAAAATATTTTTATTTA
1 ATTTTAATTATTAAAAATATTAATATTTA
75799878 ATTTTAATTA-TAAAATATATTAATATT
1 ATTTTAATTATTAAAA-ATATTAATATT
75799905 AATATAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (29 bp):
ATTTTAATTATTAAAAATATTAATATTTA
Found at i:75804009 original size:13 final size:13
Alignment explanation
Indices: 75803991--75804017 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75803981 TAAGGATAAT
75803991 TCATCCAAAAATA
1 TCATCCAAAAATA
75804004 TCATCCAAAAATA
1 TCATCCAAAAATA
75804017 T
1 T
75804018 GCTAAGCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (13 bp):
TCATCCAAAAATA
Found at i:75804361 original size:17 final size:18
Alignment explanation
Indices: 75804330--75804371 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
75804320 TAATTTAACC
*
75804330 ATTTTTATTTCTATTAT-
1 ATTTTTGTTTCTATTATA
* *
75804347 ATTTTTGTTTTTATTTTA
1 ATTTTTGTTTCTATTATA
75804365 ATTTTTG
1 ATTTTTG
75804372 CATTCTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.19, C:0.02, G:0.05, T:0.74
Consensus pattern (18 bp):
ATTTTTGTTTCTATTATA
Found at i:75807883 original size:5 final size:5
Alignment explanation
Indices: 75807873--75807922 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
75807863 CTTTTCTTAG
* *
75807873 TTTTA TTTTA TTTTA TTTTA TTATT- TGTTA TATTA -TTTA TTTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA TTTTA -TTTTA TTTTA
75807923 CTAATCTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
4 5 0.13
5 27 0.71
6 6 0.16
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:75812088 original size:25 final size:24
Alignment explanation
Indices: 75812060--75812109 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
75812050 AATTCCCGCG
75812060 ACTT-CTTGAAGAAAATCGACAAGAA
1 ACTTGCTTGAA-AAAATC-ACAAGAA
**
75812085 ACTTGCTTTTAAAAATCACAAGAA
1 ACTTGCTTGAAAAAATCACAAGAA
75812109 A
1 A
75812110 GCAATCTTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 8 0.36
25 10 0.45
26 4 0.18
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.24
Consensus pattern (24 bp):
ACTTGCTTGAAAAAATCACAAGAA
Found at i:75816843 original size:22 final size:23
Alignment explanation
Indices: 75816794--75816844 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
75816784 TTATTATTTG
*
75816794 TTTTATAATATTTTATATTTATA
1 TTTTATAATATTTTATATATATA
*
75816817 TTTTA-AATGTTTTATA-ATATA
1 TTTTATAATATTTTATATATATA
75816838 TGTTTAT
1 T-TTTAT
75816845 TGAAAAGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 5 0.21
22 14 0.58
23 5 0.21
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATAATATTTTATATATATA
Found at i:75816897 original size:83 final size:82
Alignment explanation
Indices: 75816780--75816939 Score: 230
Period size: 83 Copynumber: 1.9 Consensus size: 82
75816770 TATTTTTTAT
* * * * * *
75816780 TTGTTTATTATTTGTTTTATAATATTTTATATTTATATTTTAAATGTTTTATAATATATGTTTAT
1 TTGTTTACTATTTCTTTTATAATAATTTAAATTTAAATTTTAAATATTTTATAATATATGTTTAT
75816845 TGAAAAGTTTTTTTAAAA
66 T-AAAAGTTTTTTTAAAA
* *
75816863 TTGTTTACTATTTCTTTTATAATAATTTAAATTTAAATTTTAAATATTTTATAATATTTTTTTAT
1 TTGTTTACTATTTCTTTTATAATAATTTAAATTTAAATTTTAAATATTTTATAATATATGTTTAT
*
75816928 TCAAAGTTTTTT
66 TAAAAGTTTTTT
75816940 AATTATATTT
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
82 10 0.15
83 58 0.85
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.61
Consensus pattern (82 bp):
TTGTTTACTATTTCTTTTATAATAATTTAAATTTAAATTTTAAATATTTTATAATATATGTTTAT
TAAAAGTTTTTTTAAAA
Found at i:75817087 original size:18 final size:18
Alignment explanation
Indices: 75817050--75817166 Score: 58
Period size: 18 Copynumber: 6.9 Consensus size: 18
75817040 TTGAATAAAT
*
75817050 AAATATTATAAACAT-TTA
1 AAATATTATAAA-ATAATA
75817068 AAATATTATAAAATAAT-
1 AAATATTATAAAATAATA
*
75817085 AAATA--ATAAAAAAATTTA
1 AAATATTATAAAATAA--TA
* *
75817103 AAATGTT-T-GAATAA-A
1 AAATATTATAAAATAATA
* *
75817118 TAAATATTATAAAATATTT
1 -AAATATTATAAAATAATA
*
75817137 AAA-A-TAT-AAAT-TTA
1 AAATATTATAAAATAATA
75817151 AAATATTATAAAATAA
1 AAATATTATAAAATAA
75817167 ATGAGAAACA
Statistics
Matches: 74, Mismatches: 11, Indels: 28
0.65 0.10 0.25
Matches are distributed among these distances:
14 5 0.07
15 14 0.19
16 12 0.16
17 14 0.19
18 28 0.38
19 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.36
Consensus pattern (18 bp):
AAATATTATAAAATAATA
Found at i:75817102 original size:35 final size:34
Alignment explanation
Indices: 75817043--75817143 Score: 114
Period size: 35 Copynumber: 2.9 Consensus size: 34
75817033 AAAACGTTTG
* *
75817043 AATAAATAAATATTATAAACATTTAAAATATTATA
1 AATAAATAAATATTAAAAAAATTTAAAATATT-TA
* * *
75817078 AA-ATAATAAATAATAAAAAAATTTAAAATGTTTG
1 AATA-AATAAATATTAAAAAAATTTAAAATATTTA
*
75817112 AATAAATAAATATTATAAAATATTTAAAATAT
1 AATAAATAAATATTA-AAAAAATTTAAAATAT
75817144 AAATTTAAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
34 14 0.25
35 41 0.75
ACGTcount: A:0.61, C:0.01, G:0.02, T:0.36
Consensus pattern (34 bp):
AATAAATAAATATTAAAAAAATTTAAAATATTTA
Found at i:75817122 original size:23 final size:22
Alignment explanation
Indices: 75817088--75817157 Score: 70
Period size: 22 Copynumber: 3.0 Consensus size: 22
75817078 AAATAATAAA
* *
75817088 TAATAAAAAAATTTAAAATGTT
1 TAATAAATAAATTTAAAATATT
75817110 TGAATAAATAAATATTATAAAATATT
1 T-AATAAAT-AA-ATT-TAAAATATT
75817136 TAA-AATATAAATTTAAAATATT
1 TAATAA-ATAAATTTAAAATATT
75817158 ATAAAATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
22 10 0.24
23 9 0.22
24 6 0.15
25 7 0.17
26 9 0.22
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.39
Consensus pattern (22 bp):
TAATAAATAAATTTAAAATATT
Found at i:75817889 original size:27 final size:27
Alignment explanation
Indices: 75817846--75817897 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
75817836 AATTTAAAAA
*
75817846 AAAATTCAAAAAGTTTA-AAATAATTTT
1 AAAATCCAAAAAGTTTATAAA-AATTTT
75817873 AAAATCCAAAATA-TTTATAAAAATT
1 AAAATCCAAAA-AGTTTATAAAAATT
75817898 CAAAACTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.35
Consensus pattern (27 bp):
AAAATCCAAAAAGTTTATAAAAATTTT
Found at i:75826891 original size:21 final size:21
Alignment explanation
Indices: 75826867--75826911 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
75826857 GAAATCTCAC
*
75826867 ACAAAGAGTAAAATAATGCAT
1 ACAAAGAGTAAAACAATGCAT
* * *
75826888 ACAAAGTGTACACCAATGCAT
1 ACAAAGAGTAAAACAATGCAT
75826909 ACA
1 ACA
75826912 TAATAATTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.51, C:0.18, G:0.13, T:0.18
Consensus pattern (21 bp):
ACAAAGAGTAAAACAATGCAT
Found at i:75828216 original size:14 final size:15
Alignment explanation
Indices: 75828187--75828227 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
75828177 TTTAGGTTTG
75828187 AAAATTTTAATTAATT
1 AAAATTTT-ATTAATT
75828203 AAAATTTT-TTAATT
1 AAAATTTTATTAATT
*
75828217 AAAAATTTATT
1 AAAATTTTATT
75828228 TTCATCCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 13 0.57
15 2 0.09
16 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
AAAATTTTATTAATT
Found at i:75829743 original size:17 final size:17
Alignment explanation
Indices: 75829724--75829756 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
75829714 TACAAATAAT
75829724 TTTTAATA-TTTTAAAA
1 TTTTAATAGTTTTAAAA
75829740 TTTTAATAGTTTTAAAA
1 TTTTAATAGTTTTAAAA
75829757 AAATCATCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
TTTTAATAGTTTTAAAA
Found at i:75833807 original size:46 final size:46
Alignment explanation
Indices: 75833755--75833944 Score: 247
Period size: 46 Copynumber: 4.0 Consensus size: 46
75833745 GTGTACTCTC
75833755 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
*
75833801 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
***
75833847 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * *
75833893 TGACA-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATG--T--GTAAGACCATGGTTGAAAGATACCATGGCAACA
75833943 TG
1 TG
75833945 TCAAAGATAA
Statistics
Matches: 126, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
45 1 0.01
46 96 0.76
50 29 0.23
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:75835357 original size:29 final size:29
Alignment explanation
Indices: 75835284--75835366 Score: 78
Period size: 30 Copynumber: 2.8 Consensus size: 29
75835274 ATAAATAGTA
* *
75835284 AATTTATACATGAACTTTAGTCTAATGTGT
1 AATTTATACATGAACTTTAAT-TAATGTGC
* *
75835314 AATTTGATAAATGAACTTTAATTTA-GTGC
1 AATTT-ATACATGAACTTTAATTAATGTGC
*
75835343 AATTATATACATGAAACTTGAATT
1 AATT-TATACATG-AACTTTAATT
75835367 GTGTTTCATA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
29 13 0.30
30 17 0.39
31 14 0.32
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (29 bp):
AATTTATACATGAACTTTAATTAATGTGC
Found at i:75840885 original size:20 final size:20
Alignment explanation
Indices: 75840836--75840887 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
75840826 CCCACCCAAC
* * *
75840836 TTCACCAATTCCTTCCCATA
1 TTCATCAATTACTTCCCACA
75840856 TTCATCAATTACTTCCCTACA
1 TTCATCAATTACTTCCC-ACA
75840877 TTCAT-AATTAC
1 TTCATCAATTAC
75840888 AATAACCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.29, C:0.33, G:0.00, T:0.38
Consensus pattern (20 bp):
TTCATCAATTACTTCCCACA
Found at i:75842019 original size:20 final size:20
Alignment explanation
Indices: 75841970--75842021 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
75841960 CCCACCCAAC
* * *
75841970 TTCACCAATTCCTTCCCATA
1 TTCATCAATTACTTCCCACA
75841990 TTCATCAATTACTTCCCTACA
1 TTCATCAATTACTTCCC-ACA
75842011 TTCAT-AATTAC
1 TTCATCAATTAC
75842022 AATAACCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.29, C:0.33, G:0.00, T:0.38
Consensus pattern (20 bp):
TTCATCAATTACTTCCCACA
Found at i:75844295 original size:37 final size:37
Alignment explanation
Indices: 75844254--75844325 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
75844244 AACTTAATTA
75844254 ATTAATTTGAATATTTAGTTTAAAGTTAAAATTTTTC
1 ATTAATTTGAATATTTAGTTTAAAGTTAAAATTTTTC
*
75844291 ATTAATTTGAATATTTGGTTTAAAGTTAAAATTTT
1 ATTAATTTGAATATTTAGTTTAAAGTTAAAATTTT
75844326 CATAGAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.38, C:0.01, G:0.10, T:0.51
Consensus pattern (37 bp):
ATTAATTTGAATATTTAGTTTAAAGTTAAAATTTTTC
Found at i:75844449 original size:23 final size:23
Alignment explanation
Indices: 75844398--75844450 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
75844388 AATTCAAAAG
*
75844398 TAAAAT-ATAATATAATATTTAT
1 TAAAATGATAATATAACATTTAT
* *
75844420 CATAATGATAA-ATAACATTTAAT
1 TAAAATGATAATATAACATTT-AT
75844443 TAAAATGA
1 TAAAATGA
75844451 AATTAATCTT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (23 bp):
TAAAATGATAATATAACATTTAT
Found at i:75846819 original size:20 final size:18
Alignment explanation
Indices: 75846772--75846820 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 18
75846762 CAAGATAGAC
75846772 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
* *
75846789 ATCAAAATAATCACTTTAAT
1 ATTAAATTAAT-A-TTTAAT
75846809 ATTAAATTAATA
1 ATTAAATTAATA
75846821 AAATACTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 8 0.32
19 2 0.08
20 15 0.60
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:75856664 original size:11 final size:11
Alignment explanation
Indices: 75856648--75856673 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
75856638 AAACCACCAG
75856648 TACTCTAACAA
1 TACTCTAACAA
75856659 TACTCTAACAA
1 TACTCTAACAA
75856670 TACT
1 TACT
75856674 TCGTGGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.27, G:0.00, T:0.31
Consensus pattern (11 bp):
TACTCTAACAA
Found at i:75864625 original size:24 final size:24
Alignment explanation
Indices: 75864598--75864649 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
75864588 TTAGTAAGTC
*
75864598 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
75864622 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
75864646 AAAT
1 AAAT
75864650 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:75866436 original size:24 final size:24
Alignment explanation
Indices: 75866408--75866459 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
75866398 TTAGTAAATC
*
75866408 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
75866432 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
75866456 AAAT
1 AAAT
75866460 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:75868720 original size:5 final size:5
Alignment explanation
Indices: 75868710--75868747 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
75868700 AGTTTTTGTG
*
75868710 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAC AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
75868748 GAACATACAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:75869538 original size:16 final size:18
Alignment explanation
Indices: 75869517--75869557 Score: 59
Period size: 16 Copynumber: 2.3 Consensus size: 18
75869507 AAAATAAGGT
75869517 ATATTTTAA-TTAA-ATA
1 ATATTTTAACTTAATATA
75869533 ATATTTTAATCTTAATATA
1 ATATTTTAA-CTTAATATA
75869552 ATATTT
1 ATATTT
75869558 GGTACATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 9 0.41
18 4 0.18
19 9 0.41
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
ATATTTTAACTTAATATA
Found at i:75870783 original size:9 final size:9
Alignment explanation
Indices: 75870769--75870801 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
75870759 TCATATCTCC
75870769 ATATATCAA
1 ATATATCAA
75870778 ATATATCAA
1 ATATATCAA
75870787 ATATATCAA
1 ATATATCAA
75870796 ATATAT
1 ATATAT
75870802 AACCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (9 bp):
ATATATCAA
Found at i:75879761 original size:42 final size:42
Alignment explanation
Indices: 75879714--75879825 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 42
75879704 ATATGTGTTA
*
75879714 TCGTGTAGGACCACGTTTGGGACGTTGGCATC-ATATTTGATT
1 TCGTGTAAGACCAC-TTTGGGACGTTGGCATCGATATTTGATT
**
75879756 TCGTGTAAGACC-CTATCTGGGACACTGGCATCGATATTTGATT
1 TCGTGTAAGACCACT-T-TGGGACGTTGGCATCGATATTTGATT
* * *
75879799 ACATGTAAGACCACATCTGGGACGTTG
1 TCGTGTAAGACCAC-TTTGGGACGTTG
75879826 ACATTGTACG
Statistics
Matches: 57, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
40 1 0.02
41 2 0.04
42 24 0.42
43 28 0.49
44 1 0.02
45 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCACTTTGGGACGTTGGCATCGATATTTGATT
Found at i:75879806 original size:43 final size:42
Alignment explanation
Indices: 75879739--75879821 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 42
75879729 TTTGGGACGT
* *
75879739 TGGCATCATATTTGATTTCGTGTAAGACC-CTATCTGGGACAC
1 TGGCATCATATTTGATTACATGTAAGACCAC-ATCTGGGACAC
75879781 TGGCATCGATATTTGATTACATGTAAGACCACATCTGGGAC
1 TGGCATC-ATATTTGATTACATGTAAGACCACATCTGGGAC
75879822 GTTGACATTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 7 0.19
43 29 0.78
44 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (42 bp):
TGGCATCATATTTGATTACATGTAAGACCACATCTGGGACAC
Found at i:75889805 original size:23 final size:23
Alignment explanation
Indices: 75889757--75889829 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
75889747 CCACAAATTA
* * *
75889757 TTTATAAAATACGCAACATAGAC
1 TTTATAGAATACGCCACATAGGC
*
75889780 TTTATAGAATACGCCACACAGGC
1 TTTATAGAATACGCCACATAGGC
* * *
75889803 TTTACAGAATATGTCACATAGGC
1 TTTATAGAATACGCCACATAGGC
75889826 TTTA
1 TTTA
75889830 CAAAATATGA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (23 bp):
TTTATAGAATACGCCACATAGGC
Found at i:75889830 original size:23 final size:23
Alignment explanation
Indices: 75889772--75889856 Score: 89
Period size: 23 Copynumber: 3.7 Consensus size: 23
75889762 AAAATACGCA
* * * *
75889772 ACATAGACTTTATAGAATACGCC
1 ACATAGGCTTTACAGAATATGAC
* *
75889795 ACACAGGCTTTACAGAATATGTC
1 ACATAGGCTTTACAGAATATGAC
*
75889818 ACATAGGCTTTACAAAATATGAC
1 ACATAGGCTTTACAGAATATGAC
* *
75889841 ATAAAGGCTTTACAGA
1 ACATAGGCTTTACAGA
75889857 GAATTATGTC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (23 bp):
ACATAGGCTTTACAGAATATGAC
Found at i:75890295 original size:12 final size:12
Alignment explanation
Indices: 75890278--75890302 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
75890268 GATACTTCAT
75890278 ACACACACATAC
1 ACACACACATAC
75890290 ACACACACATAC
1 ACACACACATAC
75890302 A
1 A
75890303 TTCACTAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.40, G:0.00, T:0.08
Consensus pattern (12 bp):
ACACACACATAC
Found at i:75892166 original size:18 final size:17
Alignment explanation
Indices: 75892145--75892200 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
75892135 AAAAATTGAA
*
75892145 ATAACTTTTAAAATATTT
1 ATAACTTTTAAAAT-TTC
** *
75892163 ATAAAAATTTCAAATTTC
1 AT-AACTTTTAAAATTTC
75892181 ATAACTTTTAAAATTT-
1 ATAACTTTTAAAATTTC
75892197 ATAA
1 ATAA
75892201 AAAATTAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
16 4 0.13
17 11 0.37
18 6 0.20
19 9 0.30
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (17 bp):
ATAACTTTTAAAATTTC
Found at i:75894456 original size:164 final size:164
Alignment explanation
Indices: 75894185--75894511 Score: 645
Period size: 164 Copynumber: 2.0 Consensus size: 164
75894175 TGTGTTATGT
75894185 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGCCCTT
1 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGCCCTT
75894250 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
66 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
75894315 TGATATGTGAGTAATATATATATGCCTCTTGCAA
131 TGATATGTGAGTAATATATATATGCCTCTTGCAA
*
75894349 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGTCCTT
1 GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGCCCTT
75894414 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
66 GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
75894479 TGATATGTGAGTAATATATATATGCCTCTTGCA
131 TGATATGTGAGTAATATATATATGCCTCTTGCA
75894512 TCTGTATTTC
Statistics
Matches: 162, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
164 162 1.00
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (164 bp):
GCAATTTAATCCTTGGATATTCCCAGAACTGTTTTTAGTATTTTATTTTATTTAATTATGCCCTT
GATAATATGAATAATGTTAAAATCAATGATTTGATTGACTGATTTATTAATATTATATATATGCA
TGATATGTGAGTAATATATATATGCCTCTTGCAA
Found at i:75902854 original size:48 final size:47
Alignment explanation
Indices: 75902767--75903191 Score: 334
Period size: 48 Copynumber: 8.8 Consensus size: 47
75902757 ATACTAGGGT
* * * * *
75902767 TATGTGAGCCAGTGTAAGCCCATGTCTGGAACATAGCATCGACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTCTGG-ACATGGCATCGACCTTTA
* **
75902815 TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTCT-GGACATGGCATCGACCTTTA
**
75902863 TAT-ATGAGCTAGTGTAAGACCATGTCTGAGACATGGCATCGACCTCAA
1 TATGA-GAGCTAGTGTAAGACCATGTCTG-GACATGGCATCGACCTTTA
* * * * *
75902911 CATGGGAGCCAGTGTAAGACCATGTTTGGGAACATGGCATCGACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTCT-GG-ACATGGCATCGACCTTTA
* * * *
75902960 TATGAGAGCTAGTGTAAGACTATTTCTGGGACATGGCATCGGCCTTGA
1 TATGAGAGCTAGTGTAAGACCATGTCT-GGACATGGCATCGACCTTTA
* * * * * * *
75903008 TATGTGAGCCAGTATAAGACTATGTATGGAACATGGCATCGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTCTGG-ACATGGCATCGACCTTTA
* * * * * * *
75903056 TATGATAGGTAGTGTAAGATCATGTTTGAGACATGGCATCGGTCTCGTCA
1 TATGAGAGCTAGTGTAAGACCATGTCTG-GACATGGCATC-GAC-CTTTA
* * **
75903106 TGTG-G-GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCACCGATA
1 TATGAGAGCTAGTGTAAGACCATGTCTGG-ACATGGCATC-G-ACCTTTA
* * *
75903154 TATGAGAGCTAATATAAGACCATGTGTAGGACATGGCA
1 TATGAGAGCTAGTGTAAGACCATGTCT-GGACATGGCA
75903192 ACGGCATCTT
Statistics
Matches: 306, Mismatches: 56, Indels: 28
0.78 0.14 0.07
Matches are distributed among these distances:
47 5 0.02
48 222 0.73
49 47 0.15
50 30 0.10
51 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (47 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGACATGGCATCGACCTTTA
Found at i:75903070 original size:145 final size:145
Alignment explanation
Indices: 75902772--75903191 Score: 426
Period size: 145 Copynumber: 2.9 Consensus size: 145
75902762 AGGGTTATGT
* * *
75902772 GAGCCAGTGTAAGCCCATGTCT-GGAACATAGCATCGACATTTATATGAGAGCTAGTGTAAGACC
1 GAGCCAGTGTAAGACCATGTTTGGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACC
* * *
75902836 ATGTCTAGGACATGGCATCGGCCTCGATATATGAGCTAGTGTAAGACCATGTCTGAGACATGGCA
66 ATGTCTAGGACATGGCATCGGCCTCGATATATGAGCCAGTATAAGACCATGTATGAGACATGGCA
* *
75902901 TCGACCTCAACATGG
131 TCGACATCAACATGA
*
75902916 GAGCCAGTGTAAGACCATGTTTGGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACT
1 GAGCCAGTGTAAGACCATGTTTGGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACC
* * * * *
75902981 ATTTCTGGGACATGGCATCGGCCTTGATATGTGAGCCAGTATAAGACTATGTATG-GAACATGGC
66 ATGTCTAGGACATGGCATCGGCCTCGATATATGAGCCAGTATAAGACCATGTATGAG-ACATGGC
* ** *
75903045 ATCGGCATTTATATGA
130 ATCGACATCAACATGA
* ** * * * * *
75903061 TAGGTAGTGTAAGATCATGTTTGAG-ACATGGCATCGGTC-TCGTCATGTG-G-GCTAGTGTAAG
1 GAGCCAGTGTAAGACCATGTTTGGGAACATGGCATC-GACAT--TTATATGAGAGCTAGTGTAAG
* * * *
75903122 ACCATGT-TTGGAACATGGCATCGGCAC-CGATATATGAGAGCTAATATAAGACCATGTGT-AGG
63 ACCATGTCTAGG-ACATGGCATCGGC-CTCGATATAT--GAGCCAGTATAAGACCATGTATGA-G
75903184 ACATGGCA
123 ACATGGCA
75903192 ACGGCATCTT
Statistics
Matches: 230, Mismatches: 35, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
143 3 0.01
144 67 0.29
145 128 0.56
146 31 0.13
147 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (145 bp):
GAGCCAGTGTAAGACCATGTTTGGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAAGACC
ATGTCTAGGACATGGCATCGGCCTCGATATATGAGCCAGTATAAGACCATGTATGAGACATGGCA
TCGACATCAACATGA
Found at i:75903120 original size:193 final size:192
Alignment explanation
Indices: 75902767--75903144 Score: 465
Period size: 193 Copynumber: 2.0 Consensus size: 192
75902757 ATACTAGGGT
* * * * *
75902767 TATGTGAGCCAGTGTAAGCCCATGTCTGGAACATAGCATCGACATTTATATGAGAGCTAGTGTAA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATAGCATCGACATTGATATGAGAGCCAGTATAA
* *
75902832 GACCATGTCTAGGACATGGCATCGGCCTCGATATATGAGCTAGTGTAAGACCATGTCTGAGACAT
66 GACCATGTATAGGACATGGCATCGGCATCGATATATGAGCTAGTGTAAGACCATGTCTGAGACAT
75902897 GGCATCGACCTCAACATGGGAGCCAGTGTAAGACCATGTTTGGGAACATGGCATCGACATTTA
131 GGCATCGACCTCAACATGGGAGCCAGTGTAAGACCATGTTT-GGAACATGGCATCGACATTTA
* * * * * * * *
75902960 TATGAGAGCTAGTGTAAGACTATTTCTGGGACATGGCATCGGCCTTGATATGTGAGCCAGTATAA
1 TATGAGAGCCAGTGTAAGACCATGTCTGGAACATAGCATCGACATTGATATGAGAGCCAGTATAA
* ** * * *
75903025 GACTATGTAT-GGAACATGGCATCGGCATTTATATGAT-AGGTAGTGTAAGATCATGTTTGAGAC
66 GACCATGTATAGG-ACATGGCATCGGCATCGATAT-ATGAGCTAGTGTAAGACCATGTCTGAGAC
** ** *
75903088 ATGGCATCGGTCTCGTCATGTGG-GCTAGTGTAAGACCATGTTTGGAACATGGCATCG
129 ATGGCATCGACCTCAACATG-GGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG
75903145 GCACCGATAT
Statistics
Matches: 156, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
192 16 0.10
193 136 0.87
194 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (192 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGAACATAGCATCGACATTGATATGAGAGCCAGTATAA
GACCATGTATAGGACATGGCATCGGCATCGATATATGAGCTAGTGTAAGACCATGTCTGAGACAT
GGCATCGACCTCAACATGGGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
Found at i:75905420 original size:43 final size:43
Alignment explanation
Indices: 75905368--75905453 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
75905358 CTCACATGAC
*
75905368 CCAGAACTTTTCACATGGCTTGCCACACTGCAGTATCTCCCTT
1 CCAGAACTTTTCACATGGCTTGCCACACTACAGTATCTCCCTT
75905411 CCAGAACTTTTCACATGGCTTGCCACACTACAGTATCTCCCTT
1 CCAGAACTTTTCACATGGCTTGCCACACTACAGTATCTCCCTT
75905454 ACAGCTTAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.22, C:0.35, G:0.13, T:0.30
Consensus pattern (43 bp):
CCAGAACTTTTCACATGGCTTGCCACACTACAGTATCTCCCTT
Found at i:75908605 original size:44 final size:44
Alignment explanation
Indices: 75908555--75908640 Score: 163
Period size: 44 Copynumber: 2.0 Consensus size: 44
75908545 CAACAATCGG
75908555 TCTACTAGTGGAATCTGAATCTTGCATTGAATTATATTTTGCAT
1 TCTACTAGTGGAATCTGAATCTTGCATTGAATTATATTTTGCAT
*
75908599 TCTACTAGTGGAATCTGAATCTTGCATTGAGTTATATTTTGC
1 TCTACTAGTGGAATCTGAATCTTGCATTGAATTATATTTTGC
75908641 CAGGGCTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (44 bp):
TCTACTAGTGGAATCTGAATCTTGCATTGAATTATATTTTGCAT
Found at i:75908930 original size:18 final size:18
Alignment explanation
Indices: 75908898--75908933 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
75908888 ATAAAAACTA
75908898 AAACTGAAAACAAGAAAT
1 AAACTGAAAACAAGAAAT
75908916 AAACATGAAAA-AAGAAAT
1 AAAC-TGAAAACAAGAAAT
75908934 GTACTTGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.69, C:0.08, G:0.11, T:0.11
Consensus pattern (18 bp):
AAACTGAAAACAAGAAAT
Found at i:75914009 original size:46 final size:48
Alignment explanation
Indices: 75913814--75914079 Score: 189
Period size: 46 Copynumber: 5.6 Consensus size: 48
75913804 TGTATAATGT
* * *
75913814 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACA-CGTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTTACATCGTCAAGC
* * * *
75913861 CGATGTCATGTCCCAGACATGGTCTTACACTGAATTTAACAT-ATCCATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTG-ACTT-ACATCGT-CAAGC
* * * * **
75913911 CGATGCCACGTCCTAGACATGGTTTTACACTGAC--ACATCTTGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTTACATCGTCAAGC
* * *
75913957 CAATG-CATGTCCCAGACAT-GTCTTACATTGGCTTACATC-TCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTTACATCGTCAA-GC
* **
75914003 CGATG-CATGTCCTAGACAT-GTCTTACACT-AGC-T-C-TCGTTTCAATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTTACATCG--TCAA-GC
*
75914049 CGATGCCATGTCCCAGACATGGACTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
75914080 AGCTCTCGTA
Statistics
Matches: 172, Mismatches: 33, Indels: 27
0.74 0.14 0.12
Matches are distributed among these distances:
43 2 0.01
44 11 0.06
45 15 0.09
46 53 0.31
47 45 0.26
48 10 0.06
49 5 0.03
50 31 0.18
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTTACATCGTCAAGC
Found at i:75931931 original size:20 final size:19
Alignment explanation
Indices: 75931905--75931954 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
75931895 AGAAAACTGT
75931905 TGTACTTCGGTACCCCTGA
1 TGTACTTCGGTACCCCTGA
*
75931924 TCGTACTTAC-GTGCCCCTGA
1 T-GTACTT-CGGTACCCCTGA
*
75931944 TGTATTTCGGT
1 TGTACTTCGGT
75931955 TCTCTTGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 1 0.04
19 8 0.31
20 16 0.62
21 1 0.04
ACGTcount: A:0.14, C:0.28, G:0.22, T:0.36
Consensus pattern (19 bp):
TGTACTTCGGTACCCCTGA
Found at i:75950257 original size:36 final size:36
Alignment explanation
Indices: 75950215--75950287 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
75950205 ACTCGCTTCA
*
75950215 GGATTTGTAACTAACTTTGAATTAGGGTTTTAGGAT
1 GGATTTGTAACTAACTTCGAATTAGGGTTTTAGGAT
* * *
75950251 GGATTTGTAGCTAACTTCGGATTATGGTTTTAGGAT
1 GGATTTGTAACTAACTTCGAATTAGGGTTTTAGGAT
75950287 G
1 G
75950288 AAACAAAACA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.25, C:0.07, G:0.27, T:0.41
Consensus pattern (36 bp):
GGATTTGTAACTAACTTCGAATTAGGGTTTTAGGAT
Found at i:75956441 original size:29 final size:29
Alignment explanation
Indices: 75956399--75956460 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
75956389 GAATGTTGAG
75956399 GCTAAGATTGACGATGAAGATTAAGTTAT
1 GCTAAGATTGACGATGAAGATTAAGTTAT
75956428 GCTAAGATTGACGATGAAGATTAAGTTAT
1 GCTAAGATTGACGATGAAGATTAAGTTAT
75956457 GCTA
1 GCTA
75956461 TTATTATGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (29 bp):
GCTAAGATTGACGATGAAGATTAAGTTAT
Found at i:75958583 original size:21 final size:21
Alignment explanation
Indices: 75958559--75958606 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
75958549 GACATGCCCG
75958559 TGTGACCCTACGACACACCCA
1 TGTGACCCTACGACACACCCA
*
75958580 TGTGACCCTACGACACACCCG
1 TGTGACCCTACGACACACCCA
75958601 TGTGAC
1 TGTGAC
75958607 AAGCCGTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.25, C:0.40, G:0.19, T:0.17
Consensus pattern (21 bp):
TGTGACCCTACGACACACCCA
Found at i:75962348 original size:17 final size:17
Alignment explanation
Indices: 75962312--75962349 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
75962302 ACCACCCTAT
*
75962312 TTTATTTTATGTTTGAA
1 TTTATTTTATGTTAGAA
75962329 TTTATTTATATGTTAG-A
1 TTTATTT-TATGTTAGAA
75962346 TTTA
1 TTTA
75962350 AGTAGAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (17 bp):
TTTATTTTATGTTAGAA
Found at i:75966075 original size:40 final size:39
Alignment explanation
Indices: 75966044--75966613 Score: 820
Period size: 40 Copynumber: 14.3 Consensus size: 39
75966034 GGACTAAGAT
* * *
75966044 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAG-C
1 CCGAAGGCATTCGTGCGAGTTATAAA-TCCGGGTTAAGTC
* * * *
75966083 CAAGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 C-CGAAGGCATTCGTGCGAGTTA-TAAATCCGGGTTAAGTC
75966124 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTA-TAAATCCGGGTTAAGTC
*
75966164 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-ATAAATCCGGGTTAAGTC
*
75966204 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-ATAAATCCGGGTTAAGTC
*
75966244 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-ATAAATCCGGGTTAAGTC
*
75966284 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-ATAAATCCGGGTTAAGTC
*
75966324 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-ATAAATCCGGGTTAAGTC
75966364 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTA-TAAATCCGGGTTAAGTC
75966404 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTA-TAAATCCGGGTTAAGTC
*
75966444 CCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTA-TAAATCCGGGTTAAGTC
*
75966484 CCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTA-TAAATCCGGGTTAAGTC
*
75966524 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTA-TAAATCCGGGTTAAGTC
* * * *
75966564 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTA-TAAATCCGGGTTAAGTC
75966603 CCGAAGGCATT
1 CCGAAGGCATT
75966614 TGAACGAGGA
Statistics
Matches: 509, Mismatches: 17, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
39 36 0.07
40 468 0.92
41 5 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTATAAATCCGGGTTAAGTC
Found at i:75966128 original size:80 final size:80
Alignment explanation
Indices: 75965991--75966613 Score: 914
Period size: 80 Copynumber: 7.8 Consensus size: 80
75965981 TTGAATGCTG
* * * * * * **
75965991 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * *
75966054 TTGTGCGAGATA-CAAA
64 TCGTGCGAGTTATTAAA
* * * * *
75966070 TTCCGGGTTAAG-CCAAGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 -TCCGGGTTAAGTCC-CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAT
75966134 TCGTGCGAGTTATTAAA
64 TCGTGCGAGTTATTAAA
*
75966151 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
75966216 GTGCGAGTTGTTAAA
66 GTGCGAGTTATTAAA
*
75966231 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
75966296 GTGCGAGTTGTTAAA
66 GTGCGAGTTATTAAA
*
75966311 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
75966376 GTGCGAGTTATTAAA
66 GTGCGAGTTATTAAA
*
75966391 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
75966456 GTGCGAGTTATTAAA
66 GTGCGAGTTATTAAA
*
75966471 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
75966536 GTGCGAGTTATTAAA
66 GTGCGAGTTATTAAA
* * * * * *
75966551 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
75966614 TGAACGAGGA
Statistics
Matches: 508, Mismatches: 30, Indels: 11
0.93 0.05 0.02
Matches are distributed among these distances:
79 37 0.07
80 459 0.90
81 12 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTATTAAA
Found at i:75966210 original size:120 final size:120
Alignment explanation
Indices: 75965991--75966613 Score: 914
Period size: 120 Copynumber: 5.2 Consensus size: 120
75965981 TTGAATGCTG
* * * * * * **
75965991 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * * * * * *
75966054 TTGTGCGAGATA-CAAATTCCGGGTTAAG-CCAAGAAGGCCTTTGTGCGAGATACTAAA
64 TCGTGCGAGTTATTAAA-TCCGGGTTAAGTCC-CGAAGGCATTTGTGCGAGTTATTAAA
75966111 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
* * *
75966176 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
*
75966231 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
* * *
75966296 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
75966351 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
75966416 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
66 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
*
75966471 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
* * *
75966536 GTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
66 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
* * *
75966590 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
75966614 TGAACGAGGA
Statistics
Matches: 469, Mismatches: 30, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
119 37 0.08
120 421 0.90
121 11 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAA
Found at i:75973723 original size:40 final size:39
Alignment explanation
Indices: 75973692--75973901 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
75973682 GGACTAAGAT
* *
75973692 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
75973732 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
75973772 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
75973812 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
75973852 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
75973891 CCGAAGGCATT
1 CCGAAGGCATT
75973902 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:75973855 original size:120 final size:120
Alignment explanation
Indices: 75973639--75973901 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
75973629 TTGAATGCTG
* *
75973639 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
75973703 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
75973759 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
75973822 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
75973878 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
75973902 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:75973921 original size:79 final size:80
Alignment explanation
Indices: 75973640--75973936 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
75973630 TGAATGCTGT
* ** * * * **
75973640 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
75973703 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
75973720 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
75973784 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
75973800 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
75973864 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
75973879 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
75973937 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:75976066 original size:21 final size:21
Alignment explanation
Indices: 75976040--75976082 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
75976030 CCAGTCCAGG
75976040 TTAAATTCTAATTGTAACATA
1 TTAAATTCTAATTGTAACATA
75976061 TTAAATTCTAATTGTAACATA
1 TTAAATTCTAATTGTAACATA
75976082 T
1 T
75976083 GCTCGAGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (21 bp):
TTAAATTCTAATTGTAACATA
Found at i:75980459 original size:23 final size:23
Alignment explanation
Indices: 75980433--75980481 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
75980423 AATTAAAAAG
75980433 ATGAAAGCATATTAGCTATCATT
1 ATGAAAGCATATTAGCTATCATT
75980456 ATGAAAGCATATTAGCTATCATT
1 ATGAAAGCATATTAGCTATCATT
75980479 ATG
1 ATG
75980482 TTGTTTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (23 bp):
ATGAAAGCATATTAGCTATCATT
Found at i:75980525 original size:9 final size:9
Alignment explanation
Indices: 75980513--75980544 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
75980503 ACAAATATTA
75980513 AAAATAAAC
1 AAAATAAAC
75980522 AAAATAAAC
1 AAAATAAAC
75980531 AAAATAAAC
1 AAAATAAAC
75980540 AAAAT
1 AAAAT
75980545 GCACCAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAATAAAC
Found at i:75991428 original size:14 final size:14
Alignment explanation
Indices: 75991409--75991443 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
75991399 TGTTTGTCGG
*
75991409 TAAAATATTTTTTA
1 TAAAATAATTTTTA
75991423 TAAAATAATTTTTA
1 TAAAATAATTTTTA
*
75991437 AAAAATA
1 TAAAATA
75991444 GCTTATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TAAAATAATTTTTA
Found at i:75991453 original size:18 final size:18
Alignment explanation
Indices: 75991430--75991472 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
75991420 TTATAAAATA
*
75991430 ATTTTTAAAAAATAGCTT
1 ATTTTTAAAAAATAACTT
* * *
75991448 ATTTTTTAAAAGTAATTT
1 ATTTTTAAAAAATAACTT
75991466 ATTTTTA
1 ATTTTTA
75991473 TGATGTTTGA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (18 bp):
ATTTTTAAAAAATAACTT
Found at i:75998979 original size:43 final size:43
Alignment explanation
Indices: 75998859--75999012 Score: 136
Period size: 43 Copynumber: 3.6 Consensus size: 43
75998849 AGCTCATACA
* * **
75998859 ATGCC-ATATCCCAGATATGGTCTTACATC-TTATCATATATTG
1 ATGCCAATATCCCAGACATGGTCTTACA-CATAATCATATAACG
* * *
75998901 ATGCCACTATCCTAGACAGGGTCTTACACGA-AATCATATAACG
1 ATGCCAATATCCCAGACATGGTCTTACAC-ATAATCATATAACG
* * *
75998944 ATGCCAATATCCCATACATGGTCTTACACATAATCACA-ATACA
1 ATGCCAATATCCCAGACATGGTCTTACACATAATCATATA-ACG
* * *
75998987 ATACCAATGTCCCAGACATAGTCTTA
1 ATGCCAATATCCCAGACATGGTCTTA
75999013 TATGTAATCA
Statistics
Matches: 90, Mismatches: 17, Indels: 9
0.78 0.15 0.08
Matches are distributed among these distances:
42 8 0.09
43 82 0.91
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACACATAATCATATAACG
Found at i:76001947 original size:79 final size:82
Alignment explanation
Indices: 76001836--76002020 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
76001826 GCTACTCGTT
* *
76001836 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
76001899 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
76001916 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
76001979 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
76001996 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76002021 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:76002020 original size:40 final size:40
Alignment explanation
Indices: 76001817--76002020 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
76001807 CGGAATTTAA
** *
76001817 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
76001857 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
76001897 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
76001936 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
76001976 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
76002016 CCGGA
1 CCGGA
76002021 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:76007897 original size:66 final size:66
Alignment explanation
Indices: 76007817--76007952 Score: 227
Period size: 66 Copynumber: 2.1 Consensus size: 66
76007807 GACGCTCGTA
* * *
76007817 TGCCTTGGTCGTGGGAAATCTGGAGGGGTTACTGACTTGGGTCACATGGCCGGCCACACGCCTAT
1 TGCCTTGGTCGTGGGAAATCTGGAAGGGTTACTGACTTGGGTCACATGGCCAGCCACACGCCCAT
76007882 G
66 G
* *
76007883 TGCCTTGGTTGTGGGAAATCTGGAAGGGTTACTGACTTGGGTCACATGGCCAGCCACATGCCCAT
1 TGCCTTGGTCGTGGGAAATCTGGAAGGGTTACTGACTTGGGTCACATGGCCAGCCACACGCCCAT
76007948 G
66 G
76007949 TGCC
1 TGCC
76007953 AACCCTATGT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.18, C:0.24, G:0.33, T:0.25
Consensus pattern (66 bp):
TGCCTTGGTCGTGGGAAATCTGGAAGGGTTACTGACTTGGGTCACATGGCCAGCCACACGCCCAT
G
Found at i:76008801 original size:17 final size:17
Alignment explanation
Indices: 76008779--76008811 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
76008769 ACTATAAAAC
76008779 ATAGAAAAATAACACAA
1 ATAGAAAAATAACACAA
76008796 ATAGAAAAATAACACA
1 ATAGAAAAATAACACA
76008812 GAGTAAGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.12, G:0.06, T:0.12
Consensus pattern (17 bp):
ATAGAAAAATAACACAA
Found at i:76009495 original size:43 final size:43
Alignment explanation
Indices: 76009447--76009604 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 43
76009437 AATGCCATAG
* * * *
76009447 CCCAGATATGGTTTTACATGTTATCACATATCGATGCCACTGT
1 CCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATGT
* * * * *
76009490 CCCAGACAGGGTCTTACACGAAATCATATAACGATGCCAATGT
1 CCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATGT
** * **
76009533 CTAAAACATGGTCTTACATGTAATCACA-ATAAAATGCCAATGT
1 CCCAGACATGGTCTTACATGTAATCACATAT-CGATGCCAATGT
*
76009576 CCCAGACATGGTTTTACATGTAATCACAT
1 CCCAGACATGGTCTTACATGTAATCACAT
76009605 CTCAGTAATC
Statistics
Matches: 90, Mismatches: 23, Indels: 3
0.78 0.20 0.03
Matches are distributed among these distances:
42 1 0.01
43 89 0.99
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (43 bp):
CCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATGT
Found at i:76009793 original size:35 final size:35
Alignment explanation
Indices: 76009724--76009793 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
76009714 ACATTCGTAG
**
76009724 CAATTCAATGATAATGAAACATATATAATTCAATT
1 CAATTCAATGATAATGAAACATATATAACACAATT
* *
76009759 CAATTCAATGATAAAT-AAGCATTTATAACACAATT
1 CAATTCAATGAT-AATGAAACATATATAACACAATT
76009794 TAAATATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 27 0.90
36 3 0.10
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.33
Consensus pattern (35 bp):
CAATTCAATGATAATGAAACATATATAACACAATT
Found at i:76011794 original size:17 final size:18
Alignment explanation
Indices: 76011769--76011807 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
76011759 AAAGCTTGTG
*
76011769 AACTTTTTATTTTA-GAA
1 AACTATTTATTTTAGGAA
76011786 AACTATTTATTTTAGGAA
1 AACTATTTATTTTAGGAA
76011804 AACT
1 AACT
76011808 TAAATTTCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (18 bp):
AACTATTTATTTTAGGAA
Found at i:76021607 original size:23 final size:23
Alignment explanation
Indices: 76021564--76021607 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
76021554 TTTTTATTCA
*
76021564 TATTAATTTCATTATGCATATTT
1 TATTAATTTCATAATGCATATTT
*
76021587 TATTACTTTCATCAATG-ATAT
1 TATTAATTTCAT-AATGCATAT
76021608 ACCTATACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 15 0.83
24 3 0.17
ACGTcount: A:0.32, C:0.11, G:0.05, T:0.52
Consensus pattern (23 bp):
TATTAATTTCATAATGCATATTT
Done.