Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 232 of 279
Found at i:76029748 original size:3 final size:3
Alignment explanation
Indices: 76029740--76029812 Score: 146
Period size: 3 Copynumber: 24.3 Consensus size: 3
76029730 TTCATAACCA
76029740 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
76029788 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
76029813 TCGTGTTTCT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:76036582 original size:6 final size:6
Alignment explanation
Indices: 76036563--76036660 Score: 106
Period size: 6 Copynumber: 16.3 Consensus size: 6
76036553 ATATGAAAAC
* * * **
76036563 AAAATA AACATA AAACTA AAAATA AAAATG AACCTA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* * * * *
76036611 AAGAGA AAAATA AAAATA AACATA AAAATA AAAATA AACATA AAGATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
76036659 AA
1 AA
76036661 TGGACTCAAT
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 74 1.00
ACGTcount: A:0.74, C:0.06, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:76036586 original size:18 final size:18
Alignment explanation
Indices: 76036563--76036660 Score: 126
Period size: 18 Copynumber: 5.4 Consensus size: 18
76036553 ATATGAAAAC
*
76036563 AAAATAAACATAAA-ACTA
1 AAAATAAAAATAAACA-TA
* *
76036581 AAAATAAAAATGAACCTA
1 AAAATAAAAATAAACATA
* *
76036599 AAAATAAAAATAAAGAGA
1 AAAATAAAAATAAACATA
76036617 AAAATAAAAATAAACATA
1 AAAATAAAAATAAACATA
76036635 AAAATAAAAATAAACATA
1 AAAATAAAAATAAACATA
*
76036653 AAGATAAA
1 AAAATAAA
76036661 TGGACTCAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
18 69 1.00
ACGTcount: A:0.74, C:0.06, G:0.04, T:0.15
Consensus pattern (18 bp):
AAAATAAAAATAAACATA
Found at i:76038241 original size:3 final size:3
Alignment explanation
Indices: 76038233--76038262 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
76038223 AGAACAAGGG
76038233 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
76038263 ATCTAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:76046872 original size:13 final size:13
Alignment explanation
Indices: 76046854--76046885 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
76046844 GCTCAGCAGG
76046854 GACATGCCCGTGT
1 GACATGCCCGTGT
*
76046867 GACATGGCCGTGT
1 GACATGCCCGTGT
76046880 GACATG
1 GACATG
76046886 ATTGCCAGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.25, G:0.34, T:0.22
Consensus pattern (13 bp):
GACATGCCCGTGT
Found at i:76048551 original size:27 final size:27
Alignment explanation
Indices: 76048521--76048576 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
76048511 AATAAGTAAA
*
76048521 AACAAAAAATTATACATAAATATTTCT
1 AACAAAAAATTATAAATAAATATTTCT
*
76048548 AACAGAAAATTATAAATAAATATTTCT
1 AACAAAAAATTATAAATAAATATTTCT
76048575 AA
1 AA
76048577 ACATCTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (27 bp):
AACAAAAAATTATAAATAAATATTTCT
Found at i:76051455 original size:224 final size:225
Alignment explanation
Indices: 76051064--76051517 Score: 901
Period size: 224 Copynumber: 2.0 Consensus size: 225
76051054 AAAGCAAAAA
76051064 CTAAAGCTAGCAACTCTTTTTTCGTAGTAGTATAGTTTTCTTGTACAGCCGTTAAGGTTTTGCTG
1 CTAAAGCTAGCAACTCTTTTTTCGTAGTAGTATAGTTTTCTTGTACAGCCGTTAAGGTTTTGCTG
76051129 GTGTAATAGATAGGTTGAAAATGCTTGTCTCTTCGCTGTCCCAGTACTGCACCTACTGCAAAATC
66 GTGTAATAGATAGGTTGAAAATGCTTGTCTCTTCGCTGTCCCAGTACTGCACCTACTGCAAAATC
76051194 ACTTGCATCACACATTAGTTCAAATTGAAAGTTCCAATCAGGTGCAATTATAATTGGAGCATTAA
131 ACTTGCATCACACATTAGTTCAAATTGAAAGTTCCAATCAGGTGCAATTATAATTGGAGCATTAA
76051259 TTAATTTATCCTTTAAAGTATTAAATGCTT
196 TTAATTTATCCTTTAAAGTATTAAATGCTT
76051289 -TAAAGCTAGCAACTCTTTTTTCGTAGTAGTATAGTTTTCTTGTACAGCCGTTAAGGTTTTGCTG
1 CTAAAGCTAGCAACTCTTTTTTCGTAGTAGTATAGTTTTCTTGTACAGCCGTTAAGGTTTTGCTG
76051353 GTGTAATAGATAGGTTGAAAATGCTTGTCTCTTCGCTGTCCCAGTACTGCACCTACTGCAAAATC
66 GTGTAATAGATAGGTTGAAAATGCTTGTCTCTTCGCTGTCCCAGTACTGCACCTACTGCAAAATC
76051418 ACTTGCATCACACATTAGTTCAAATTGAAAGTTCCAATCAGGTGCAATTATAATTGGAGCATTAA
131 ACTTGCATCACACATTAGTTCAAATTGAAAGTTCCAATCAGGTGCAATTATAATTGGAGCATTAA
76051483 TTAATTTATCCTTTAAAGTATTAAATGCTT
196 TTAATTTATCCTTTAAAGTATTAAATGCTT
76051513 CTAAA
1 CTAAA
76051518 CATTCCTGAT
Statistics
Matches: 228, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
224 224 0.98
225 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (225 bp):
CTAAAGCTAGCAACTCTTTTTTCGTAGTAGTATAGTTTTCTTGTACAGCCGTTAAGGTTTTGCTG
GTGTAATAGATAGGTTGAAAATGCTTGTCTCTTCGCTGTCCCAGTACTGCACCTACTGCAAAATC
ACTTGCATCACACATTAGTTCAAATTGAAAGTTCCAATCAGGTGCAATTATAATTGGAGCATTAA
TTAATTTATCCTTTAAAGTATTAAATGCTT
Found at i:76053744 original size:40 final size:39
Alignment explanation
Indices: 76053700--76053804 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
76053690 AGTGACCATA
*
76053700 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
76053740 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
76053778 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
76053805 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:76053761 original size:39 final size:40
Alignment explanation
Indices: 76053660--76053823 Score: 169
Period size: 40 Copynumber: 4.1 Consensus size: 40
76053650 TTGAATGATG
* *
76053660 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
76053700 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
76053739 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * **
76053779 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
76053819 TCCGG
1 TCCGG
76053824 TTAAATTCCG
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
39 36 0.34
40 59 0.56
41 10 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:76053823 original size:79 final size:80
Alignment explanation
Indices: 76053660--76053810 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
76053650 TTGAATGATG
*
76053660 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
76053725 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
76053740 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
76053802 TTGAACGAG
64 TTGAACGAG
76053811 TAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:76066875 original size:70 final size:70
Alignment explanation
Indices: 76066800--76066940 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
76066790 TATCATCTAT
76066800 AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACAGTTTATCACCACTCCACCCCAACC
1 AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACAGTTTATCACCACTCCACCCCAACC
76066865 ACAGC
66 ACAGC
*
76066870 AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACGGTTTATCACCACTCCACCCCAACC
1 AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACAGTTTATCACCACTCCACCCCAACC
76066935 ACAGC
66 ACAGC
76066940 A
1 A
76066941 GCCTATATTT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (70 bp):
AAAATGCATTAAACATGGGGTAAAAATATGTATAATTTACAGTTTATCACCACTCCACCCCAACC
ACAGC
Found at i:76069645 original size:24 final size:24
Alignment explanation
Indices: 76069630--76069741 Score: 161
Period size: 24 Copynumber: 4.7 Consensus size: 24
76069620 CGGATTTGAG
*
76069630 TGGCACTATGTGTGCGTATTGGTA
1 TGGCACTATGTGTGCGTATTTGTA
*
76069654 TGGAACTATGTGTGCGTATTTGTA
1 TGGCACTATGTGTGCGTATTTGTA
*
76069678 TGGCACTATGTGTGCGTATATGTA
1 TGGCACTATGTGTGCGTATTTGTA
* * * *
76069702 TGGCACTACGTGTGCGTAATTATT
1 TGGCACTATGTGTGCGTATTTGTA
76069726 TGGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
76069742 GAGTTGAATC
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 78 1.00
ACGTcount: A:0.19, C:0.13, G:0.30, T:0.38
Consensus pattern (24 bp):
TGGCACTATGTGTGCGTATTTGTA
Found at i:76071157 original size:28 final size:27
Alignment explanation
Indices: 76071121--76071213 Score: 109
Period size: 27 Copynumber: 3.4 Consensus size: 27
76071111 ATAATATGAT
*
76071121 AGAGTCACCAGATACAAATAATCGTGGC
1 AGAGCCACCAGATACAAATAAT-GTGGC
*
76071149 AGAGCCACCAGAATAGAAAT-ATGTGGC
1 AGAGCCACCAG-ATACAAATAATGTGGC
*
76071176 AGAGCCACCAGAT-CAGATAATTGTGGC
1 AGAGCCACCAGATACAAATAA-TGTGGC
*
76071203 ATAGCCACCAG
1 AGAGCCACCAG
76071214 GACGCTTCCT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
25 3 0.05
26 3 0.05
27 32 0.56
28 12 0.21
29 7 0.12
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.16
Consensus pattern (27 bp):
AGAGCCACCAGATACAAATAATGTGGC
Found at i:76078093 original size:15 final size:15
Alignment explanation
Indices: 76078073--76078104 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
76078063 ATTCTTGTCA
76078073 AAAGTGGTAAGTTTT
1 AAAGTGGTAAGTTTT
76078088 AAAGTGGTAAGTTTT
1 AAAGTGGTAAGTTTT
76078103 AA
1 AA
76078105 TTTTAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (15 bp):
AAAGTGGTAAGTTTT
Found at i:76083359 original size:24 final size:24
Alignment explanation
Indices: 76083330--76083377 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
76083320 CCCGAAAGGG
76083330 TTTCCACGTAAAAATCTATGTGTT
1 TTTCCACGTAAAAATCTATGTGTT
76083354 TTTCCACGTAAAAATCTATGTGTT
1 TTTCCACGTAAAAATCTATGTGTT
76083378 CTTTTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (24 bp):
TTTCCACGTAAAAATCTATGTGTT
Found at i:76087060 original size:18 final size:20
Alignment explanation
Indices: 76087024--76087070 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
76087014 AGTTGTAAGT
76087024 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
76087044 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
76087063 ATGATATA
1 AT-ATATA
76087071 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:76087630 original size:101 final size:100
Alignment explanation
Indices: 76087418--76087651 Score: 265
Period size: 101 Copynumber: 2.3 Consensus size: 100
76087408 ATTCATTGTG
* **
76087418 AGTCACGTGTGTAGTACTAAGTGCAGGCTAATACGTGTATCAGATGGTTAAGTCACGTGTGTAGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAACGTTAAGTCACGTGTGTAGT
* * * *
76087483 ACTAAGTACAGGCTACTACGTTTACCAGATTGATA
66 ACTAAGTACAAGCTACTACATGTACCAGATGGATA
* * * * * * *
76087518 GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGTGTACTC-GTTAACTTTGA-TCACGTGTGT
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAG--AACGTTAAGTCACGTGTGT
** *
76087581 AGTACTAAGTACAAGCTACTACATGTATTAGATGGTTA
63 AGTACTAAGTACAAGCTACTACATGTACCAGATGGATA
*
76087619 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
76087652 AATGTACTAG
Statistics
Matches: 109, Mismatches: 22, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
100 34 0.31
101 71 0.65
102 4 0.04
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (100 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAACGTTAAGTCACGTGTGTAGT
ACTAAGTACAAGCTACTACATGTACCAGATGGATA
Found at i:76087657 original size:50 final size:50
Alignment explanation
Indices: 76087418--76087701 Score: 257
Period size: 50 Copynumber: 5.7 Consensus size: 50
76087408 ATTCATTGTG
*
76087418 AGTCACGTGTGTAGTACTAAGTGCAGGCTAATACGTGTA-TCAGATGGTTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATGGTTA
* * * * *
76087468 AGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTTTACCAGATTGATA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGGTTA
* * * * * * * **
76087518 GGTCGCATGTGTAGTACTAAATGCAGGCTACTATGTGTACTCGTTAACTT-
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGAT-GGTTA
* * * * *
76087568 TGATCACGTGTGTAGTACTAAGTACAAGCTACTACATGTATTAGATGGTTA
1 AG-TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGGTTA
* ** * * *
76087619 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTAAATGTACTAGATTGATC
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGGTTA
* * * *
76087669 GGTCGCATGTGTAGAACTAAGTGCAGGCTACTA
1 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
76087702 TGCGTACCAG
Statistics
Matches: 184, Mismatches: 46, Indels: 8
0.77 0.19 0.03
Matches are distributed among these distances:
50 149 0.81
51 35 0.19
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (50 bp):
AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATGGTTA
Found at i:76087694 original size:151 final size:151
Alignment explanation
Indices: 76087420--76087708 Score: 443
Period size: 151 Copynumber: 1.9 Consensus size: 151
76087410 TCATTGTGAG
* * *
76087420 TCACGTGTGTAGTACTAAGTGCAGGCTAATACGTGTATCAGATGGTTAAGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTACAAGCTAATACATGTATCAGATGGTTAAGTCACGTGTGTAGTAC
** * *
76087485 TAAGTACAGGCTACTACGTTTACCAGATTGATAGGTCGCATGTGTAGTACTAAATGCAGGCTACT
66 TAAGTACAGGCTACTAAATGTACCAGATTGATAGGTCGCATGTGTAGAACTAAATGCAGGCTACT
*
76087550 ATGTGTACTCGTTAACTTTGA
131 ATGCGTACTCGTTAACTTTGA
* *
76087571 TCACGTGTGTAGTACTAAGTACAAGCTACTACATGTATTAGATGGTTAAGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTACAAGCTAATACATGTATCAGATGGTTAAGTCACGTGTGTAGTAC
** * * *
76087636 TAAGTGTAGGCTACTAAATGTACTAGATTGATCGGTCGCATGTGTAGAACTAAGTGCAGGCTACT
66 TAAGTACAGGCTACTAAATGTACCAGATTGATAGGTCGCATGTGTAGAACTAAATGCAGGCTACT
76087701 ATGCGTAC
131 ATGCGTAC
76087709 CAGAGAGCTT
Statistics
Matches: 123, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
151 123 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (151 bp):
TCACGTGTGTAGTACTAAGTACAAGCTAATACATGTATCAGATGGTTAAGTCACGTGTGTAGTAC
TAAGTACAGGCTACTAAATGTACCAGATTGATAGGTCGCATGTGTAGAACTAAATGCAGGCTACT
ATGCGTACTCGTTAACTTTGA
Found at i:76087933 original size:16 final size:16
Alignment explanation
Indices: 76087912--76087943 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76087902 AGAATGGAGT
76087912 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
76087928 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
76087944 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:76091394 original size:13 final size:13
Alignment explanation
Indices: 76091372--76091401 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
76091362 TTTAAACATA
76091372 ATTAAATATAATT
1 ATTAAATATAATT
*
76091385 ATTAATTATAATT
1 ATTAAATATAATT
76091398 ATTA
1 ATTA
76091402 GGGATAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTAAATATAATT
Found at i:76091781 original size:14 final size:14
Alignment explanation
Indices: 76091762--76091802 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
76091752 CTAGTTTCCA
*
76091762 GTTTAGAATTTATT
1 GTTTAGGATTTATT
*
76091776 GTTTAGGATTTAAT
1 GTTTAGGATTTATT
*
76091790 GCTTAGGATTTAT
1 GTTTAGGATTTAT
76091803 ATCTAATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (14 bp):
GTTTAGGATTTATT
Found at i:76101812 original size:46 final size:46
Alignment explanation
Indices: 76101756--76102037 Score: 352
Period size: 46 Copynumber: 6.0 Consensus size: 46
76101746 AGTGTGCTCT
76101756 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
76101802 CTGATGTGAAATGTGTAAGACAATGGTTGAAAG-TACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
76101847 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
76101893 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
**
76101939 CATGGCAGCGTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 C-T-G-A---T---ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
76101994 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
76102038 TCATGTCAAA
Statistics
Matches: 209, Mismatches: 16, Indels: 22
0.85 0.06 0.09
Matches are distributed among these distances:
45 44 0.21
46 120 0.57
47 1 0.00
48 1 0.00
49 1 0.00
52 2 0.01
53 1 0.00
54 1 0.00
55 38 0.18
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:76101911 original size:91 final size:92
Alignment explanation
Indices: 76101756--76102037 Score: 352
Period size: 91 Copynumber: 3.0 Consensus size: 92
76101746 AGTGTGCTCT
*
76101756 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATGTGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
76101821 ACAATGGTTGAAAG-TACCATGGCAAC
66 ACAATGGTTGAAAGATACCATGGCAAC
*
76101847 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
*
76101912 ACTATGGTTGAAAGATACCATGGCAAC
66 ACAATGGTTGAAAGATACCATGGCAAC
** * *
76101939 CATGGCAGCGTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAA
1 C-T-G-A---T---ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-A
* * * * *
76102003 AATGAGTAAGACCATAGTTGAAAGACACTATGGCA
56 AATGTGTAAGACAATGGTTGAAAGATACCATGGCA
76102038 TCATGTCAAA
Statistics
Matches: 167, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
91 76 0.46
92 13 0.08
93 1 0.01
94 1 0.01
95 1 0.01
98 1 0.01
100 1 0.01
101 73 0.44
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (92 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
ACAATGGTTGAAAGATACCATGGCAAC
Found at i:76101967 original size:55 final size:55
Alignment explanation
Indices: 76101882--76101993 Score: 170
Period size: 55 Copynumber: 2.0 Consensus size: 55
76101872 GTTGAAAGAT
* * ** *
76101882 ACCATGGCAGCCTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCA
1 ACCATGGCAGCCTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCA
*
76101937 ACCATGGCAGCGTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCA
1 ACCATGGCAGCCTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCA
76101992 AC
1 AC
76101994 ATGACAGAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.21
Consensus pattern (55 bp):
ACCATGGCAGCCTAACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCA
Found at i:76102012 original size:101 final size:101
Alignment explanation
Indices: 76101852--76102037 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 101
76101842 GCAACCTGAT
** * * * * *
76101852 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAATGTGTAAGACTAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCAT
* *
76101917 GGTTGAAAGATACCATGGCAACCATGGCAGCGTAAC
66 AGTTGAAAGACACCATGGCAACCATGGCAGCGTAAC
76101953 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCA
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAATGAGTAAGACCA
*
76102017 TAGTTGAAAGACACTATGGCA
65 TAGTTGAAAGACACCATGGCA
76102038 TCATGTCAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
100 1 0.01
101 73 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (101 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAGTAAGACCAT
AGTTGAAAGACACCATGGCAACCATGGCAGCGTAAC
Found at i:76105517 original size:43 final size:43
Alignment explanation
Indices: 76105465--76105590 Score: 173
Period size: 44 Copynumber: 2.9 Consensus size: 43
76105455 ATAAGATTCG
76105465 GATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATC
1 GATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATC
* * *
76105508 GATTTGTGATTTACGTGTAAGACCCTGTCTGGGACAG-TGGCATC
1 GATATGTGATTT-CATGTAAGACCATGTCTGGGAC-GTTGGCATC
* * *
76105552 GATATGTGATTACATGTAAGACCATGCCTAGGACGTTGG
1 GATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGG
76105591 TGTTGTACAA
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.01
43 32 0.45
44 37 0.52
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (43 bp):
GATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATC
Found at i:76105537 original size:44 final size:44
Alignment explanation
Indices: 76105465--76105590 Score: 177
Period size: 43 Copynumber: 2.9 Consensus size: 44
76105455 ATAAGATTCG
76105465 GATATGTGATTT-CATGTAAGACCATGTCTGGGACGTTGGCATC
1 GATATGTGATTTACATGTAAGACCATGTCTGGGACGTTGGCATC
* * *
76105508 GATTTGTGATTTACGTGTAAGACCCTGTCTGGGACAG-TGGCATC
1 GATATGTGATTTACATGTAAGACCATGTCTGGGAC-GTTGGCATC
* *
76105552 GATATGTGA-TTACATGTAAGACCATGCCTAGGACGTTGG
1 GATATGTGATTTACATGTAAGACCATGTCTGGGACGTTGG
76105591 TGTTGTACAA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 1 0.01
43 35 0.49
44 35 0.49
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (44 bp):
GATATGTGATTTACATGTAAGACCATGTCTGGGACGTTGGCATC
Found at i:76109262 original size:79 final size:82
Alignment explanation
Indices: 76109151--76109335 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
76109141 GCTACTCGTT
* *
76109151 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
76109214 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
76109231 CAAATGCCTTCGGG-TTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
76109294 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
76109311 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76109336 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:76109268 original size:39 final size:40
Alignment explanation
Indices: 76109151--76109335 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
76109141 GCTACTCGTT
*
76109151 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
76109191 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
76109231 CAAATGCCTTCGGG-TTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
76109270 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
76109311 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76109336 CATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:76110605 original size:71 final size:71
Alignment explanation
Indices: 76110518--76110661 Score: 279
Period size: 71 Copynumber: 2.0 Consensus size: 71
76110508 AAGCAAGAAC
*
76110518 TCCTTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAGATGAAAAAGGATGAACATAATTTTTCTT
1 TCCTTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAATTTTTCTT
76110583 TTCTTT
66 TTCTTT
76110589 TCCTTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAATTTTTCTT
1 TCCTTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAATTTTTCTT
76110654 TTCTTT
66 TTCTTT
76110660 TC
1 TC
76110662 TTTAACTCAC
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 72 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (71 bp):
TCCTTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAATTTTTCTT
TTCTTT
Found at i:76117313 original size:40 final size:40
Alignment explanation
Indices: 76117276--76117541 Score: 342
Period size: 40 Copynumber: 6.7 Consensus size: 40
76117266 GCTACTCGTT
* *
76117276 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
76117316 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
76117356 CAAATGCCTTCGGAACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
76117396 CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
76117436 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
76117476 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-AACTCGCA
*
76117517 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
76117542 CATCATTCAA
Statistics
Matches: 207, Mismatches: 15, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
39 3 0.01
40 190 0.92
41 14 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:76117402 original size:120 final size:119
Alignment explanation
Indices: 76117243--76117541 Score: 381
Period size: 120 Copynumber: 2.5 Consensus size: 119
76117233 AAATCACGTA
* **
76117243 CCTTCGGAATTTAACCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATA
1 CCTTCGGAACTTAACCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAGCCCGGATT-TA
76117306 GTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCACAAATG
64 GTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATTTAGTAACTCGCACAAATG
* * *
76117362 CCTTCGGAACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACGTAACCCGGATTTAG
1 CCTTCGGAACTTAA-CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGATTTAG
** *
76117427 TAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGTACAAATG
65 TAACTCGCACAAATGCCTTCGGATCTTAACCCGGATTTAGTAACTCGCACAAATG
* * * * * *
76117482 CCTTCGGATCTTAGTCCGGATATGGTCACCTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGAACTTA-ACCGGATATAGT-AACTCGCACAAATGCCTTCGGGACATAGCCCGGA
76117542 CATCATTCAA
Statistics
Matches: 157, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
119 17 0.11
120 128 0.82
121 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (119 bp):
CCTTCGGAACTTAACCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGATTTAGT
AACTCGCACAAATGCCTTCGGATCTTAACCCGGATTTAGTAACTCGCACAAATG
Found at i:76122483 original size:47 final size:47
Alignment explanation
Indices: 76122414--76122508 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
76122404 AATTCATCAA
*
76122414 ACGGCAAAAGCATCAAGTCCGCCGGAAAACAGGAACCTCGAATTTCT
1 ACGGCAAAAGCATCAAGTCCGCCGAAAAACAGGAACCTCGAATTTCT
76122461 ACGGCAAAAGCATCAAGTCCGCCGAAAAACAGGAACCTCGAATTTCT
1 ACGGCAAAAGCATCAAGTCCGCCGAAAAACAGGAACCTCGAATTTCT
76122508 A
1 A
76122509 GGGGACATTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.38, C:0.27, G:0.20, T:0.15
Consensus pattern (47 bp):
ACGGCAAAAGCATCAAGTCCGCCGAAAAACAGGAACCTCGAATTTCT
Found at i:76124147 original size:16 final size:16
Alignment explanation
Indices: 76124126--76124157 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
76124116 ACCAATCAAA
76124126 TGTAACACCCCAAACC
1 TGTAACACCCCAAACC
*
76124142 TGTAACACCCCGAACC
1 TGTAACACCCCAAACC
76124158 CGAAACTGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.44, G:0.09, T:0.12
Consensus pattern (16 bp):
TGTAACACCCCAAACC
Found at i:76125572 original size:2 final size:2
Alignment explanation
Indices: 76125567--76125600 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
76125557 TATATATATA
76125567 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
76125601 CATTCGGCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:76126466 original size:40 final size:40
Alignment explanation
Indices: 76126411--76126519 Score: 200
Period size: 40 Copynumber: 2.7 Consensus size: 40
76126401 CTTGATATAT
*
76126411 TATATATCCGCGTTAAATCCCGCAGGCTTCATGCTGGTAA
1 TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
*
76126451 TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
76126491 TATATATCCGGGTTAAATCCCGCAGGCTT
1 TATATATCCGGGTTAAATCCCGCAGGCTT
76126520 AGTACTGGTA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (40 bp):
TATATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAA
Found at i:76126528 original size:40 final size:40
Alignment explanation
Indices: 76126411--76126535 Score: 198
Period size: 40 Copynumber: 3.1 Consensus size: 40
76126401 CTTGATATAT
*
76126411 TATATATCCGCGTTAAATCCCGCAGGCTTCA-TGCTGGTAA
1 TATATATCCGGGTTAAATCCCGCAGGCTT-AGTGCTGGTAA
*
76126451 TATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
* *
76126491 TATATATCCGGGTTAAATCCCGCAGGCTTAGTACTGGTAC
1 TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
76126531 TATAT
1 TATAT
76126536 CCGGGCTTAA
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (40 bp):
TATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAA
Found at i:76132460 original size:48 final size:45
Alignment explanation
Indices: 76132306--76132619 Score: 174
Period size: 46 Copynumber: 6.7 Consensus size: 45
76132296 GTATAATGCT
*** *
76132306 GATGCCATGTCCCAGACATGGTCTTACACTGGTTCATC-CATCAAGTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGACACATCTCAT--AGCC
* * * * * *
76132353 GATGCCATATCCTAGACAATGTTTTACACTAGCTCTCACATATC-TATGTC
1 GATGCCATGTCCCAGAC-ATGTCTTACACT-G---ACACATCTCATA-GCC
* * *
76132403 GATGCCATGTCCCAGACATGGTCTTACATTGACACTTCT-ATACGTACT
1 GATGCCATGTCCCAGACAT-GTCTTACACTGACACATCTCATA-G--CC
* *
76132451 GATGCCATGTCCCAGACATTGTTTTACACTGGCACATCTCATAGCC
1 GATGCCATGTCCCAGACA-TGTCTTACACTGACACATCTCATAGCC
* *
76132497 GATG-CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGA-GGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGAC--ACATCTC-ATAGCC
* * * * *
76132543 GATG-CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCA-ATGCT
1 GATGCCATGTCCCAGACATGTCTTACACT-G-ACACATCTCATA-GCC
* *
76132589 GATGCCATGTCCAAGACACGGTCTTACACTG
1 GATGCCATGTCCCAGACA-TGTCTTACACTG
76132620 GCTCTCATAA
Statistics
Matches: 213, Mismatches: 33, Indels: 42
0.74 0.11 0.15
Matches are distributed among these distances:
44 13 0.06
45 14 0.07
46 61 0.29
47 38 0.18
48 48 0.23
49 8 0.04
50 26 0.12
51 4 0.02
52 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
GATGCCATGTCCCAGACATGTCTTACACTGACACATCTCATAGCC
Found at i:76132544 original size:46 final size:46
Alignment explanation
Indices: 76132451--76132664 Score: 195
Period size: 46 Copynumber: 4.6 Consensus size: 46
76132441 TATACGTACT
* * *
76132451 GATGCCATGTCCCAGACATTGTTTTACACTGG--CACATCTC-ATAGCC
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCTCTCATCTCGA-GGCC
76132497 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGCC
* * * * * *
76132543 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCC
* * * *
76132589 GATGCCATGTCCAAGACACGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCTCTCAT-CTCGAGGCC
* *
76132637 GATGCAAGTCCCAGACGTGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
76132665 AGCACACAAA
Statistics
Matches: 137, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
44 12 0.09
45 13 0.09
46 65 0.47
47 23 0.17
48 23 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCC
Found at i:76132637 original size:94 final size:92
Alignment explanation
Indices: 76132497--76132667 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 92
76132487 TCTCATAGCC
* * * *
76132497 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAAACATG
1 GATGCATGTCCAAGACAGGTCTTACACTGGCTTACATATCGAGGCCGATGCAAGTCCCAAACATG
76132562 TCTTACACTAGCTCTCGTCTCAATGCT
66 TCTTACACTAGCTCTCGTCTCAATGCT
* *
76132589 GATGCCATGTCCAAGACACGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCAAGTCCCAGA
1 GATG-CATGTCCAAGACA-GGTCTTACACTGGCT-TACAT-ATCGAGGCCGATGCAAGTCCCAAA
*
76132652 CGTGTCTTACACTAGC
62 CATGTCTTACACTAGC
76132668 ACACAAATAA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 4 0.06
93 12 0.18
94 50 0.74
95 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (92 bp):
GATGCATGTCCAAGACAGGTCTTACACTGGCTTACATATCGAGGCCGATGCAAGTCCCAAACATG
TCTTACACTAGCTCTCGTCTCAATGCT
Found at i:76151292 original size:40 final size:40
Alignment explanation
Indices: 76151208--76151392 Score: 214
Period size: 40 Copynumber: 4.7 Consensus size: 40
76151198 TTGAATGATG
* * * * *
76151208 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
76151248 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
76151288 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76151327 TCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
76151368 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
76151393 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76151344 original size:79 final size:81
Alignment explanation
Indices: 76151208--76151392 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
76151198 TTGAATGATG
* * *
76151208 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGACCCGAAGGCAAT
76151272 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
76151287 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAGACCCGAAGGCAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGACCCGAAGGCAA
*
76151350 TTGTGCGAGTTACTATA
65 TTGTGCGAGATACTATA
* *
76151367 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76151393 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
79 58 0.64
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGACCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:76151414 original size:79 final size:78
Alignment explanation
Indices: 76151209--76151415 Score: 204
Period size: 79 Copynumber: 2.6 Consensus size: 78
76151199 TGAATGATGT
** * * * * * *
76151209 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTTACTATATCCGG-TTAAGACCCGAAGGCAATT
*
76151273 GTGCGAGATACTAATT
63 GTGCGAGATACTAATA
** *
76151289 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGACCCGAAGGCAATTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCC-GGTTAAGACCCGAAGGCAATTGT
*
76151354 GCGAGTTACT-ATAA
65 GCGAGATACTAAT-A
*
76151368 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAA
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTATATCCGGTTAA
76151416 ATTCCGAAGG
Statistics
Matches: 109, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.02
79 63 0.58
80 44 0.40
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCCGGTTAAGACCCGAAGGCAATTGTG
CGAGATACTAATA
Found at i:76151423 original size:79 final size:79
Alignment explanation
Indices: 76151255--76151425 Score: 206
Period size: 79 Copynumber: 2.2 Consensus size: 79
76151245 ATATCCGGAC
* * **
76151255 TAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGT
1 TAAGATCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
76151320 TACTAAATCCGGGT
66 TACTAAATCCGGGT
* * *
76151334 TAAGACCCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGATCCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGA
*
76151398 G-TAGCTATATCC-GGT
64 GTTA-CTAAATCCGGGT
76151413 TAA-ATTCCGAAGG
1 TAAGA-TCCGAAGG
76151426 TACGTGATTT
Statistics
Matches: 79, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
78 3 0.04
79 51 0.65
80 25 0.32
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (79 bp):
TAAGATCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
TACTAAATCCGGGT
Found at i:76154889 original size:44 final size:42
Alignment explanation
Indices: 76154839--76154931 Score: 116
Period size: 44 Copynumber: 2.2 Consensus size: 42
76154829 TGTTTTCGTT
* *
76154839 TAAGACCACGTCTGGGACGTTGGCATCG-ACTTATGATTTACGTG
1 TAAGACCACGACTGGGACATTGGCATCGTA-TT-TGATTTA-GTG
* *
76154883 TAAGACCATGACTGGGACATTGGCATGGTATTTGATTTAGTG
1 TAAGACCACGACTGGGACATTGGCATCGTATTTGATTTAGTG
76154925 TAAGACC
1 TAAGACC
76154932 TTGTTTAGGA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
42 10 0.23
43 7 0.16
44 26 0.59
45 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (42 bp):
TAAGACCACGACTGGGACATTGGCATCGTATTTGATTTAGTG
Found at i:76156597 original size:15 final size:16
Alignment explanation
Indices: 76156561--76156590 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76156551 ACATATCATT
76156561 TATTTCATTATATCAA
1 TATTTCATTATATCAA
76156577 TATTTCA-TATATCA
1 TATTTCATTATATCA
76156591 TAGTTTCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:76157772 original size:64 final size:64
Alignment explanation
Indices: 76157590--76157838 Score: 299
Period size: 64 Copynumber: 3.9 Consensus size: 64
76157580 TCATATAGTT
* * * * *
76157590 TAGCTCTCTTGTAC-ACATGGTG-A-ACAGTCAGTACCACCTATGTGACCTAGCCA-ATTTATCT
1 TAGCTCTCTTGT-CTACATGGTGTACACA-T-AGTACCACCCATGCGACCTAGCTACATATATCC
76157651 CG
63 CG
* * * * * **
76157653 TAGCTCTCTCGTCTACATGGTGTCCTCACCTGGAACCATGCATGCGACCTAGCTACATATATCCC
1 TAGCTCTCTTGTCTACATGGTGT--ACACATAGTACCACCCATGCGACCTAGCTACATATATCCC
76157718 G
64 G
*
76157719 TAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATATATCCCG
1 TAGCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATCCCG
*
76157783 TAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 TAGCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACAT
76157839 CATAATGTCT
Statistics
Matches: 160, Mismatches: 20, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 90 0.56
65 17 0.11
66 31 0.19
67 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (64 bp):
TAGCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATCCCG
Found at i:76157898 original size:132 final size:128
Alignment explanation
Indices: 76157590--76157907 Score: 329
Period size: 132 Copynumber: 2.4 Consensus size: 128
76157580 TCATATAGTT
* * * * *
76157590 TAGCTCTCTTGTACACATGGTGAACAGTCAGTACCACCTATGTGACCTAGCCA-ATTTATCTCGT
1 TAGCTCTCTTGTACACATGGTGTACACTCAGTACCACC-ATGTGACCTAGCTACATATATCCCGT
* * * **
76157654 AGCTCTCTCGTCTACATGGTGTCCTCACCTGGAACCATGCATGCGACCTAGCTACATATATCCCG
65 AGCTCTCTCGTCTACATGGTGT-CACACATAGAACCACCCATGCGACCTAGCTACATATATCCCG
* *
76157719 TAGCTCTCTTGT-CTACATGGTGTACACAT-AGTATCACCCATGCGACCTAGCTACATATATCCC
1 TAGCTCTCTTGTAC-ACATGGTGTACAC-TCAGTACCA-CCATGTGACCTAGCTACATATATCCC
* * *
76157782 GTAGCTCTCTTGTCTACATGGTGT-ACACATAGTATCACCCATGCGACCTAGCTACATCATAATG
63 GTAGCTCTCTCGTCTACATGGTGTCACACATAGAACCACCCATGCGACCTAGCTACAT-AT-A--
**
76157846 TCTTG
124 TCCCG
* * * *
76157851 TAGCTCTCTTGTACACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACATA
1 TAGCTCTCTTGTACACATGGTGTACACTCAGTACCA-CCATGTGACCTAGCTACATA
76157908 CTATTTGTAT
Statistics
Matches: 155, Mismatches: 24, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
128 27 0.17
129 43 0.28
130 34 0.22
131 1 0.01
132 49 0.32
133 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.30
Consensus pattern (128 bp):
TAGCTCTCTTGTACACATGGTGTACACTCAGTACCACCATGTGACCTAGCTACATATATCCCGTA
GCTCTCTCGTCTACATGGTGTCACACATAGAACCACCCATGCGACCTAGCTACATATATCCCG
Found at i:76163851 original size:40 final size:40
Alignment explanation
Indices: 76163805--76163938 Score: 151
Period size: 40 Copynumber: 3.3 Consensus size: 40
76163795 TATAAGTGGT
* * *
76163805 ACTTAGTGTGCTAATCAACATAGCTTCGGCTATATATGGC
1 ACTTAGTGTGCGAATCGACATAGCTTCTGCTATATATGGC
* * * * *
76163845 ATTTAGTGTTCGATTCGACATAGCTACTGCTATAAATGGC
1 ACTTAGTGTGCGAATCGACATAGCTTCTGCTATATATGGC
* * * *
76163885 ACTTAGTGTGCGAGATCGAGATAGATTCTACTATATATTGC
1 ACTTAGTGTGCGA-ATCGACATAGCTTCTGCTATATATGGC
76163926 ACTTAGTGTGCGA
1 ACTTAGTGTGCGA
76163939 TTTGAGACAG
Statistics
Matches: 76, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
40 43 0.57
41 33 0.43
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.34
Consensus pattern (40 bp):
ACTTAGTGTGCGAATCGACATAGCTTCTGCTATATATGGC
Found at i:76167675 original size:27 final size:27
Alignment explanation
Indices: 76167645--76167867 Score: 293
Period size: 27 Copynumber: 8.3 Consensus size: 27
76167635 CGCTTTGTGA
* *
76167645 AATTACCGAAATATCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76167672 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
76167699 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76167726 AATAACCGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76167753 AATTACCAAAATACCCCTGGAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76167780 AATGACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76167807 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
76167834 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
76167861 AATTACC
1 AATTACC
76167868 ATTTTGCCCC
Statistics
Matches: 170, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 170 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:76167703 original size:81 final size:81
Alignment explanation
Indices: 76167618--76167867 Score: 222
Period size: 81 Copynumber: 3.1 Consensus size: 81
76167608 CAATTTATAA
* * * * *
76167618 AATTACCCAAATATCCTCGCT-TTGTGAAATTACCGAAATATCCTTGTAGGGTAGAATTACTGAA
1 AATTACCGAAATA-CCTCGCTATAGTGAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
76167682 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * * * * *
76167699 AATTACCGAAATACC-C-CTGTAGGGTAGAATAACCGAAATACCCCTATAAGGTAGAATTACCAA
1 AATTACCGAAATACCTCGCTATAGTG-A-AATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
* *
76167762 AATACCCCTGGAAGGTAG
64 AATACCCCTGTAGGGTAG
* * ** *
76167780 AATGACCGAAATACCCTTG-TAGGGTAGAAA-TACCAAAATACCCCTGTAGGGTAGAATTACCGA
1 AATTACCGAAATA-CCTCGCTATAGT-GAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
* * * *
76167843 GATACCCTTGTGGGGTAA
64 AATACCCCTGTAGGGTAG
76167861 AATTACC
1 AATTACC
76167868 ATTTTGCCCC
Statistics
Matches: 132, Mismatches: 30, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
78 2 0.02
79 4 0.03
80 3 0.02
81 115 0.87
82 4 0.03
83 3 0.02
84 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (81 bp):
AATTACCGAAATACCTCGCTATAGTGAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAG
Found at i:76168304 original size:25 final size:25
Alignment explanation
Indices: 76168274--76168369 Score: 93
Period size: 25 Copynumber: 3.6 Consensus size: 25
76168264 CATTCACATT
*
76168274 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
*
76168299 CCGATTCTGATTTTGATTCTGTTACCTGATA
1 -C-----TGATTCTGATTCTGTTACCTGATA
* * *
76168330 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTTACCTGATA
76168355 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
76168370 ATTCTAGTCT
Statistics
Matches: 61, Mismatches: 4, Indels: 11
0.80 0.05 0.14
Matches are distributed among these distances:
25 35 0.57
26 1 0.02
30 1 0.02
31 24 0.39
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:76168309 original size:31 final size:31
Alignment explanation
Indices: 76168271--76168341 Score: 133
Period size: 31 Copynumber: 2.3 Consensus size: 31
76168261 TTGCATTCAC
76168271 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
*
76168302 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
76168333 ATTCTGATT
1 ATTCTGATT
76168342 CTGTCACCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACCG
Found at i:76168315 original size:6 final size:6
Alignment explanation
Indices: 76168271--76168374 Score: 70
Period size: 6 Copynumber: 16.8 Consensus size: 6
76168261 TTGCATTCAC
* * * *
76168271 ATTCTG ATTTTG ATTCTG -TTACCTG ATACCG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
76168320 -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
76168370 ATTCT
1 ATTCT
76168375 AGTCTGATAA
Statistics
Matches: 75, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
5 5 0.07
6 59 0.79
7 8 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:76169317 original size:18 final size:17
Alignment explanation
Indices: 76169292--76169332 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
76169282 CTATTATCTC
* *
76169292 TTTATTTTTATTTTTAT
1 TTTATTTTCATTTTAAT
76169309 TTCTATTTTCATTTTAAT
1 TT-TATTTTCATTTTAAT
76169327 TTTATT
1 TTTATT
76169333 ATTTTCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTATTTTCATTTTAAT
Found at i:76171923 original size:40 final size:40
Alignment explanation
Indices: 76171868--76172056 Score: 263
Period size: 40 Copynumber: 4.7 Consensus size: 40
76171858 TAATTGAGGA
* *
76171868 TTATATCCAGGTTAAGTCCCGAAGGCTTTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
76171908 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTT
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * * *
76171948 TTATATCCAGGTTAAGTCCCGAAGGCATTCATCCTAGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
76171988 TTATATCTGGGCTAAG-CCCTGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCC-GAAGGCATTCGTGCTGGTTG
* *
76172028 TTACATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGTTAAGTCCCGAAGGCATT
76172057 TGTGTTTGGA
Statistics
Matches: 131, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
39 3 0.02
40 125 0.95
41 3 0.02
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (40 bp):
TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:76179180 original size:40 final size:40
Alignment explanation
Indices: 76179015--76179186 Score: 161
Period size: 40 Copynumber: 4.3 Consensus size: 40
76179005 CAACTATAGT
* * * * *
76179015 GGCACCTAGTGTGCGATTCGACATAGCTTCGGTTATATAT
1 GGCACTTAGTGTGCGATTCGAGATAGCTTCAGCTATATAC
* * *
76179055 GGCACTCAGTGTGCGATTCG-GCATAGCTTCGGCTATATAT
1 GGCACTTAGTGTGCGATTCGAG-ATAGCTTCAGCTATATAC
* * *
76179095 GGCACATAGTGTGCGAGATCGAGGTAGCTTCTA-CTA-ATAC
1 GGCACTTAGTGTGCGA-TTCGAGATAGCTTC-AGCTATATAC
* * *
76179135 GGCACTTAGTGTGCGATTTGAGATAGCTTCAGTTATGTAC
1 GGCACTTAGTGTGCGATTCGAGATAGCTTCAGCTATATAC
*
76179175 AGCACTTAGTGT
1 GGCACTTAGTGT
76179187 ACGAGACATC
Statistics
Matches: 109, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
38 1 0.01
39 13 0.12
40 81 0.74
41 13 0.12
42 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (40 bp):
GGCACTTAGTGTGCGATTCGAGATAGCTTCAGCTATATAC
Found at i:76182791 original size:27 final size:27
Alignment explanation
Indices: 76182761--76182983 Score: 293
Period size: 27 Copynumber: 8.3 Consensus size: 27
76182751 CGCTTTGTGA
* *
76182761 AATTACCGAAATATCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76182788 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
76182815 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76182842 AATAACCGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76182869 AATTACCAAAATACCCCTGGAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76182896 AATGACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76182923 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
76182950 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
76182977 AATTACC
1 AATTACC
76182984 ATTTTGCCCC
Statistics
Matches: 170, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 170 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:76182819 original size:81 final size:81
Alignment explanation
Indices: 76182734--76182983 Score: 222
Period size: 81 Copynumber: 3.1 Consensus size: 81
76182724 CAATTTATAA
* * * * *
76182734 AATTACCCAAATATCCTCGCT-TTGTGAAATTACCGAAATATCCTTGTAGGGTAGAATTACTGAA
1 AATTACCGAAATA-CCTCGCTATAGTGAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
76182798 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * * * * *
76182815 AATTACCGAAATACC-C-CTGTAGGGTAGAATAACCGAAATACCCCTATAAGGTAGAATTACCAA
1 AATTACCGAAATACCTCGCTATAGTG-A-AATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
* *
76182878 AATACCCCTGGAAGGTAG
64 AATACCCCTGTAGGGTAG
* * ** *
76182896 AATGACCGAAATACCCTTG-TAGGGTAGAAA-TACCAAAATACCCCTGTAGGGTAGAATTACCGA
1 AATTACCGAAATA-CCTCGCTATAGT-GAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
* * * *
76182959 GATACCCTTGTGGGGTAA
64 AATACCCCTGTAGGGTAG
76182977 AATTACC
1 AATTACC
76182984 ATTTTGCCCC
Statistics
Matches: 132, Mismatches: 30, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
78 2 0.02
79 4 0.03
80 3 0.02
81 115 0.87
82 4 0.03
83 3 0.02
84 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (81 bp):
AATTACCGAAATACCTCGCTATAGTGAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAG
Found at i:76183420 original size:25 final size:25
Alignment explanation
Indices: 76183390--76183485 Score: 93
Period size: 25 Copynumber: 3.6 Consensus size: 25
76183380 CATTCACATT
*
76183390 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
*
76183415 CCGATTCTGATTTTGATTCTGTTACCTGATA
1 -C-----TGATTCTGATTCTGTTACCTGATA
* * *
76183446 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTTACCTGATA
76183471 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
76183486 ATTCTAGTCT
Statistics
Matches: 61, Mismatches: 4, Indels: 11
0.80 0.05 0.14
Matches are distributed among these distances:
25 35 0.57
26 1 0.02
30 1 0.02
31 24 0.39
ACGTcount: A:0.19, C:0.20, G:0.16, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:76183425 original size:31 final size:31
Alignment explanation
Indices: 76183387--76183457 Score: 133
Period size: 31 Copynumber: 2.3 Consensus size: 31
76183377 TTGCATTCAC
76183387 ATTCTGATTTTGATTCTGTTACCTGATACCG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
*
76183418 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACCG
76183449 ATTCTGATT
1 ATTCTGATT
76183458 CTGTCACCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACCG
Found at i:76183431 original size:6 final size:6
Alignment explanation
Indices: 76183387--76183490 Score: 70
Period size: 6 Copynumber: 16.8 Consensus size: 6
76183377 TTGCATTCAC
* * * *
76183387 ATTCTG ATTTTG ATTCTG -TTACCTG ATACCG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
76183436 -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
76183486 ATTCT
1 ATTCT
76183491 AGTCTGATAA
Statistics
Matches: 75, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
5 5 0.07
6 59 0.79
7 8 0.11
8 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:76184433 original size:18 final size:17
Alignment explanation
Indices: 76184408--76184448 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
76184398 CTATTATCTC
* *
76184408 TTTATTTTTATTTTTAT
1 TTTATTTTCATTTTAAT
76184425 TTCTATTTTCATTTTAAT
1 TT-TATTTTCATTTTAAT
76184443 TTTATT
1 TTTATT
76184449 ATTTTCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTATTTTCATTTTAAT
Found at i:76187039 original size:40 final size:40
Alignment explanation
Indices: 76186984--76187172 Score: 263
Period size: 40 Copynumber: 4.7 Consensus size: 40
76186974 TAATTGAGGA
* *
76186984 TTATATCCAGGTTAAGTCCCGAAGGCTTTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
76187024 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTT
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * * *
76187064 TTATATCCAGGTTAAGTCCCGAAGGCATTCATCCTAGTTG
1 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
76187104 TTATATCTGGGCTAAG-CCCTGAAGGCATTCGTGCTGGTTG
1 TTATATCCGGGTTAAGTCCC-GAAGGCATTCGTGCTGGTTG
* *
76187144 TTACATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGTTAAGTCCCGAAGGCATT
76187173 TGTGTTTGGA
Statistics
Matches: 131, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
39 3 0.02
40 125 0.95
41 3 0.02
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (40 bp):
TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:76190231 original size:59 final size:59
Alignment explanation
Indices: 76190139--76190250 Score: 206
Period size: 59 Copynumber: 1.9 Consensus size: 59
76190129 AAATTTAACT
*
76190139 GGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGATTATAGTAACTTTAGCC
1 GGATATAGCTACTCGTTCAAATGCCTTCAGGACATAGCCCGATTATAGTAACTTTAGCC
*
76190198 GGATATAGCTACTCGTTCAAATGCCTTCAGGACATAGCCCGGTTATAGTAACT
1 GGATATAGCTACTCGTTCAAATGCCTTCAGGACATAGCCCGATTATAGTAACT
76190251 CGCACAAATG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
59 51 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (59 bp):
GGATATAGCTACTCGTTCAAATGCCTTCAGGACATAGCCCGATTATAGTAACTTTAGCC
Found at i:76190333 original size:79 final size:80
Alignment explanation
Indices: 76190217--76190399 Score: 212
Period size: 79 Copynumber: 2.3 Consensus size: 80
76190207 TACTCGTTCA
* * *
76190217 AATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTC-GGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
76190280 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
76190297 AATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
76190361 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
76190376 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGA
76190400 CATCATCCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 61 0.69
80 25 0.28
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:76190399 original size:40 final size:40
Alignment explanation
Indices: 76190192--76190399 Score: 230
Period size: 40 Copynumber: 5.2 Consensus size: 40
76190182 TATAGTAACT
** *
76190192 TTAG-CCGGATATAGCT-ACTCGTTCAAATGCCTTCAGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
* *
76190231 ATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
76190271 TTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
76190310 TTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-C
* * * *
76190350 TTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGAC
1 TTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGAC
76190390 TTAGCCCGGA
1 TTAGCCCGGA
76190400 CATCATCCGA
Statistics
Matches: 143, Mismatches: 18, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.01
39 36 0.25
40 93 0.65
41 12 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:76199035 original size:85 final size:85
Alignment explanation
Indices: 76198906--76199084 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
76198896 TTTTTTATTG
76198906 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
76198971 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
76198991 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
76199056 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
76199076 CCCATGCTC
1 CCCATGCTC
76199085 ATGGCCGGCC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.26, C:0.26, G:0.08, T:0.39
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:76207487 original size:116 final size:116
Alignment explanation
Indices: 76207283--76207514 Score: 464
Period size: 116 Copynumber: 2.0 Consensus size: 116
76207273 GAAACATACC
76207283 TCATTGTTGGGATTTTACAAGCGTATTAACTGAAATTTTTACAGCAAGATCGCTCATTCCCAAAT
1 TCATTGTTGGGATTTTACAAGCGTATTAACTGAAATTTTTACAGCAAGATCGCTCATTCCCAAAT
76207348 CACATACCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCG
66 CACATACCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCG
76207399 TCATTGTTGGGATTTTACAAGCGTATTAACTGAAATTTTTACAGCAAGATCGCTCATTCCCAAAT
1 TCATTGTTGGGATTTTACAAGCGTATTAACTGAAATTTTTACAGCAAGATCGCTCATTCCCAAAT
76207464 CACATACCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCG
66 CACATACCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCG
76207515 GGACATAGCC
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
116 116 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (116 bp):
TCATTGTTGGGATTTTACAAGCGTATTAACTGAAATTTTTACAGCAAGATCGCTCATTCCCAAAT
CACATACCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCG
Found at i:76207547 original size:40 final size:41
Alignment explanation
Indices: 76207503--76207612 Score: 136
Period size: 41 Copynumber: 2.7 Consensus size: 41
76207493 GCTACTCGTT
* *
76207503 CAAATGCCTTCGGGACATAGCCCGG-TATTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTAGCA
* *
76207543 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCA
*
76207584 CAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
76207613 CATTCGAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
39 3 0.05
40 25 0.42
41 29 0.48
42 3 0.05
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
Found at i:76209548 original size:40 final size:40
Alignment explanation
Indices: 76209490--76209693 Score: 252
Period size: 40 Copynumber: 5.1 Consensus size: 40
76209480 CGGATGATAA
* *
76209490 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
76209530 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTATA-T
*
76209570 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* * **
76209610 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* * * **
76209650 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
76209690 CCGG
1 CCGG
76209694 TTAAAGCCCG
Statistics
Matches: 148, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 146 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:76209623 original size:80 final size:80
Alignment explanation
Indices: 76209490--76209693 Score: 286
Period size: 80 Copynumber: 2.5 Consensus size: 80
76209480 CGGATGATAA
* *
76209490 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCCCGAAGGCATTT
* **
76209554 GTGTGAGTTACTA-ATT
65 GTGCGAACTACTATA-T
* *
76209570 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGTATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
76209635 TGCGAACTACTATAT
66 TGCGAACTACTATAT
* * *
76209650 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGTGGCTATATCCGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGG
76209694 TTAAAGCCCG
Statistics
Matches: 111, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 109 0.98
81 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAACTACTATAT
Found at i:76214575 original size:43 final size:46
Alignment explanation
Indices: 76214521--76214638 Score: 145
Period size: 45 Copynumber: 2.7 Consensus size: 46
76214511 CGGGCTTCGG
*
76214521 GCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-ACG-GGCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGATTATACGAGCCTTTGA
* * * * *
76214564 GCTTAGTAGGCTATGATGCCAGTGAAAT-ATTATTCGAGCCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGATTATACGAGCCTTTGA
*
76214609 GCCTAGCAGTCTATAATGCCGGTGAAATGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA
76214639 AATGTTATGT
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
42 1 0.02
43 26 0.43
44 2 0.03
45 30 0.50
46 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (46 bp):
GCCTAGCAGGCTATAATGCCGGTGAAATGATTATACGAGCCTTTGA
Found at i:76214969 original size:38 final size:38
Alignment explanation
Indices: 76214935--76215105 Score: 211
Period size: 38 Copynumber: 4.5 Consensus size: 38
76214925 GCAGGCTATA
* *
76214935 TGCTGGAATTATATCTGGGTTAAATCCCGTAGGCTTCG
1 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
76214973 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * * *
76215011 TGCT-GATAATATATCTGGGTTAATTCCTGCAGGCTTCG
1 TGCTGGA-ATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * *
76215049 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTAG
1 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
* *
76215087 TGCTGGTATTATATTCGGG
1 TGCTGGAATTATATCCGGG
76215106 CCTTTGAGCC
Statistics
Matches: 116, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
36 1 0.01
37 2 0.02
38 110 0.95
39 3 0.03
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.33
Consensus pattern (38 bp):
TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:76215045 original size:76 final size:76
Alignment explanation
Indices: 76214944--76215100 Score: 242
Period size: 76 Copynumber: 2.1 Consensus size: 76
76214934 ATGCTGGAAT
* *
76214944 TATATCTGGGTTAAATCCCGTAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
1 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCCT
*
76215009 CGTGCTGATAA
66 AGTGCTGATAA
* * *
76215020 TATATCTGGGTTAATTCCTGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCT
1 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCCT
* *
76215085 AGTGCTGGTAT
66 AGTGCTGATAA
76215096 TATAT
1 TATAT
76215101 TCGGGCCTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (76 bp):
TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCCT
AGTGCTGATAA
Found at i:76215240 original size:45 final size:45
Alignment explanation
Indices: 76215098--76215257 Score: 200
Period size: 45 Copynumber: 3.6 Consensus size: 45
76215088 GCTGGTATTA
* * *
76215098 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGATAC
* *
76215143 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGTCGATGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGATAC
*
76215188 TATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGATGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGATGAGAT-AC
* * *
76215233 TAATCGGGCC-TCGATCCTAGCAGGC
1 TATTCGGGCCTTTGAGCCTAGCAGGC
76215258 GAAATGCTGG
Statistics
Matches: 101, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
44 16 0.16
45 83 0.82
46 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGATAC
Found at i:76220916 original size:34 final size:35
Alignment explanation
Indices: 76220842--76220917 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 35
76220832 CTTTGTTCGC
*
76220842 ATACTG-TATTGAAATGGACTAAGGCCCAGACTGC
1 ATACTGTTATTGAAATGGACTAAGGCCCAGACTGA
* * *
76220876 CT-CTGTTATTGAAATGGGCTCAGGCCCAGACT-A
1 ATACTGTTATTGAAATGGACTAAGGCCCAGACTGA
76220909 ATACTGTTA
1 ATACTGTTA
76220918 CTAAAAAATG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
33 4 0.11
34 31 0.89
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (35 bp):
ATACTGTTATTGAAATGGACTAAGGCCCAGACTGA
Found at i:76256650 original size:18 final size:18
Alignment explanation
Indices: 76256623--76256666 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
76256613 CCCATTATAG
*
76256623 TAACAATAATCAGTGCAA
1 TAACAGTAATCAGTGCAA
* *
76256641 TAACAGTAATCAGTGTAG
1 TAACAGTAATCAGTGCAA
76256659 TAACAGTA
1 TAACAGTA
76256667 TACAAGTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.25
Consensus pattern (18 bp):
TAACAGTAATCAGTGCAA
Found at i:76256753 original size:38 final size:38
Alignment explanation
Indices: 76256711--76256798 Score: 158
Period size: 38 Copynumber: 2.3 Consensus size: 38
76256701 CTCCGTCCAA
* *
76256711 CCCTACACTCCATGTGGGGATATAATCAACTCACCCAT
1 CCCTACACTCCATGCGGGGATATAATCAACCCACCCAT
76256749 CCCTACACTCCATGCGGGGATATAATCAACCCACCCAT
1 CCCTACACTCCATGCGGGGATATAATCAACCCACCCAT
76256787 CCCTACACTCCA
1 CCCTACACTCCA
76256799 GAATTAGCAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.28, C:0.40, G:0.11, T:0.20
Consensus pattern (38 bp):
CCCTACACTCCATGCGGGGATATAATCAACCCACCCAT
Found at i:76257056 original size:27 final size:27
Alignment explanation
Indices: 76257018--76257308 Score: 374
Period size: 27 Copynumber: 10.9 Consensus size: 27
76257008 ATGTATGCAT
* * * *
76257018 CACAT-AGAGCAAAATAGTCATCTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
76257044 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
** *
76257071 CGTATAAGGGCAAAACAGTCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
*
76257098 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
76257125 CACATAAGGGCAAAACAATTATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
76257152 CACATAAGAGCAAAAATAGTCATTTTAC
1 CACATAAGGGC-AAAACAGTCATTTTAC
*
76257180 TACATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
76257207 CATATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
76257234 CAC-TAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
76257260 CAC-TAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
76257286 CAC-TAAAGGCAAAACAATCATTT
1 CACATAAGGGCAAAACAGTCATTT
76257309 ATCAATTTGG
Statistics
Matches: 237, Mismatches: 26, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 72 0.30
27 143 0.60
28 22 0.09
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:76262178 original size:66 final size:66
Alignment explanation
Indices: 76262102--76262232 Score: 244
Period size: 66 Copynumber: 2.0 Consensus size: 66
76262092 TTCGAGTCTT
76262102 TCTTTTGTTAAGGCTTGCTATTTTGTTTTAACCAAATCCTTACCCTTGAAGTATTAACTTAAGTT
1 TCTTTTGTTAAGGCTTGCTATTTTGTTTTAACCAAATCCTTACCCTTGAAGTATTAACTTAAGTT
76262167 C
66 C
* *
76262168 TCTTTTGTTAAGGCTTGCTATTTTGTTTTAACTAAATCCTTACCCTTGAAGTATTGACTTAAGTT
1 TCTTTTGTTAAGGCTTGCTATTTTGTTTTAACCAAATCCTTACCCTTGAAGTATTAACTTAAGTT
76262233 TAATTCAGTG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.24, C:0.17, G:0.13, T:0.47
Consensus pattern (66 bp):
TCTTTTGTTAAGGCTTGCTATTTTGTTTTAACCAAATCCTTACCCTTGAAGTATTAACTTAAGTT
C
Found at i:76262468 original size:13 final size:13
Alignment explanation
Indices: 76262452--76262486 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
76262442 TCTTCCATTT
76262452 TTCTTTTTCTTTA
1 TTCTTTTTCTTTA
* *
76262465 TTCTTTTACTTTT
1 TTCTTTTTCTTTA
76262478 TTCTTTTTC
1 TTCTTTTTC
76262487 ACTGCTTTGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.77
Consensus pattern (13 bp):
TTCTTTTTCTTTA
Found at i:76265112 original size:25 final size:25
Alignment explanation
Indices: 76265064--76265147 Score: 91
Period size: 25 Copynumber: 3.4 Consensus size: 25
76265054 CTGGAGGCCT
*
76265064 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAAATGGGGCAA
***
76265088 AGCCCTTTTTGGTAAAATGGGGCAA
1 AGCCCTTTTCAATAAAATGGGGCAA
*
76265113 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAAATGGGGCA-A
76265139 AGCCCTTTT
1 AGCCCTTTT
76265148 GCACTTCCTC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
23 5 0.10
24 5 0.10
25 30 0.60
26 10 0.20
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (25 bp):
AGCCCTTTTCAATAAAATGGGGCAA
Found at i:76265223 original size:20 final size:20
Alignment explanation
Indices: 76265198--76265283 Score: 129
Period size: 20 Copynumber: 4.3 Consensus size: 20
76265188 TATGAATACG
*
76265198 TCATGTGCATTTCATTCATA
1 TCATGTGCATTTCATACATA
76265218 TCATGTGCATTTCATACATA
1 TCATGTGCATTTCATACATA
*
76265238 TCATGTGCATTTTATACATA
1 TCATGTGCATTTCATACATA
*
76265258 TCATGTGCATATCATATCA-A
1 TCATGTGCATTTCATA-CATA
76265278 TCATGT
1 TCATGT
76265284 ATATCATATC
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 59 0.97
21 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (20 bp):
TCATGTGCATTTCATACATA
Found at i:76265270 original size:11 final size:11
Alignment explanation
Indices: 76265198--76265272 Score: 54
Period size: 11 Copynumber: 7.4 Consensus size: 11
76265188 TATGAATACG
*
76265198 TCATGTGCATT
1 TCATGTGCATA
76265209 TCAT-T-CATA
1 TCATGTGCATA
*
76265218 TCATGTGCATT
1 TCATGTGCATA
*
76265229 TCA--TACATA
1 TCATGTGCATA
76265238 TCATGTGCAT-
1 TCATGTGCATA
* * *
76265248 T-TTATACATA
1 TCATGTGCATA
76265258 TCATGTGCATA
1 TCATGTGCATA
76265269 TCAT
1 TCAT
76265273 ATCAATCATG
Statistics
Matches: 47, Mismatches: 11, Indels: 12
0.67 0.16 0.17
Matches are distributed among these distances:
9 19 0.40
10 4 0.09
11 24 0.51
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.43
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:76265289 original size:9 final size:10
Alignment explanation
Indices: 76265198--76265290 Score: 52
Period size: 9 Copynumber: 9.4 Consensus size: 10
76265188 TATGAATACG
*
76265198 TCATGTGCATT
1 TCATGT-CATA
76265209 TCAT-TCATA
1 TCATGTCATA
*
76265218 TCATGTGCATT
1 TCATGT-CATA
*
76265229 TCAT-ACATA
1 TCATGTCATA
*
76265238 TCATGTGCATT
1 TCATGT-CATA
* *
76265249 TTAT-ACATA
1 TCATGTCATA
76265258 TCATGTGCATA
1 TCATGT-CATA
*
76265269 TCATATCA-A
1 TCATGTCATA
76265278 TCATGT-ATA
1 TCATGTCATA
76265287 TCAT
1 TCAT
76265291 ATCCCACGTA
Statistics
Matches: 62, Mismatches: 13, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
8 1 0.02
9 31 0.50
10 4 0.06
11 26 0.42
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (10 bp):
TCATGTCATA
Found at i:76265962 original size:27 final size:27
Alignment explanation
Indices: 76265932--76266214 Score: 165
Period size: 27 Copynumber: 10.4 Consensus size: 27
76265922 GTAATTTCAC
* * *
76265932 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
* *
76265959 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
76265986 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
***** *
76266013 AATCGAGGGTACTTTGGTAATT-TTTA
1 AATCGAGGGTAAAACAGTAATTCTATA
*** * *
76266039 CAAGTCGAGGGTATTTCAGTAATTTTACA
1 -AA-TCGAGGGTAAAACAGTAATTCTATA
* * **** * *
76266068 AATTAGGGGGTACTTTAGTAATTTTACA
1 AA-TCGAGGGTAAAACAGTAATTCTATA
* **** *
76266096 AA-CCAGGAGTATTTTAGTAATTTTATA
1 AATCGAGG-GTAAAACAGTAATTCTATA
* *
76266123 AATCGAGGGTAAAACGGTAATTCTATG
1 AATCGAGGGTAAAACAGTAATTCTATA
**
76266150 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
* * *
76266177 AATCGAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
* *
76266204 AACCGGGGGTA
1 AATCGAGGGTA
76266215 CTTTGGTAAT
Statistics
Matches: 210, Mismatches: 41, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
26 5 0.02
27 157 0.75
28 46 0.22
29 2 0.01
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:76266033 original size:54 final size:54
Alignment explanation
Indices: 76265932--76266214 Score: 185
Period size: 54 Copynumber: 5.2 Consensus size: 54
76265922 GTAATTTCAC
* * * *
76265932 AATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTA
* **** *
76265986 AATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTACTTTGGTAATT-TTTA
1 AATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTA
*** * * * *****
76266039 CAAGTCGAGGGTATTTCAGTAATTTTACAAATTAGGGGGTACTTTAGTAATT-T-TA
1 -AA-TCGAGGGTAAAACAGTAATTTTATAAA-TCGAGGGTAAAACGGTAATTCTGTA
* * **** * *
76266094 CAAACCAGGAGTATTTTAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATG
1 -AATCGAGG-GTAAAACAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTA
** * *
76266150 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTA
* *
76266204 AACCGGGGGTA
1 AATCGAGGGTA
76266215 CTTTGGTAAT
Statistics
Matches: 181, Mismatches: 42, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
53 3 0.02
54 106 0.59
55 53 0.29
56 19 0.10
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (54 bp):
AATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTA
Found at i:76266050 original size:28 final size:27
Alignment explanation
Indices: 76266001--76266133 Score: 108
Period size: 28 Copynumber: 4.9 Consensus size: 27
76265991 AGGGTAAAAC
* * *
76266001 AGTAATTCTATAAATCGAGGGTACTTT
1 AGTAATTTTACAAGTCGAGGGTACTTT
*
76266028 GGTAATTTTTACAAGTCGAGGGTA-TTT
1 AGTAA-TTTTACAAGTCGAGGGTACTTT
* * *
76266055 CAGTAATTTTACAAATTAGGGGGTACTTT
1 -AGTAATTTTAC-AAGTCGAGGGTACTTT
* * *
76266084 AGTAATTTTACAA-ACCAGGAGTATTTT
1 AGTAATTTTACAAGTCGAGG-GTACTTT
* *
76266111 AGTAATTTTATAAATCGAGGGTA
1 AGTAATTTTACAAGTCGAGGGTA
76266134 AAACGGTAAT
Statistics
Matches: 84, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
26 2 0.02
27 36 0.43
28 43 0.51
29 3 0.04
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
AGTAATTTTACAAGTCGAGGGTACTTT
Found at i:76266079 original size:137 final size:135
Alignment explanation
Indices: 76265912--76266160 Score: 293
Period size: 137 Copynumber: 1.8 Consensus size: 135
76265902 TACCCTATAG
* * **
76265912 GGGTATTTCAGTAATTTCACAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGG-GTAAAACAG
1 GGGTATTTCAGTAATTTCACAATAGAGGGTAAAACAGTAATTTTACAAA-CAAGGAGTAAAACAG
*
76265976 TAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACA
65 TAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACA
76266041 AGTCGA
130 AGTCGA
* * **** * ****
76266047 GGGTATTTCAGTAATTTTACAAATTAGGGGGTACTTTAGTAATTTTACAAACCAGGAGTATTTTA
1 GGGTATTTCAGTAATTTCAC-AA-TAGAGGGTAAAACAGTAATTTTACAAACAAGGAGTAAAACA
* * *
76266112 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATGAATCGAGGGTA
64 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTA
76266161 AAATGGTAAT
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
135 19 0.21
136 6 0.07
137 67 0.73
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.33
Consensus pattern (135 bp):
GGGTATTTCAGTAATTTCACAATAGAGGGTAAAACAGTAATTTTACAAACAAGGAGTAAAACAGT
AATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTTACAA
GTCGA
Found at i:76266093 original size:55 final size:56
Alignment explanation
Indices: 76266019--76266125 Score: 146
Period size: 55 Copynumber: 1.9 Consensus size: 56
76266009 TATAAATCGA
* * *
76266019 GGGTACTTTGGTAATTTTTACAAGTCGAGG-GTATTTCAGTAATTTTACAAATTAGG
1 GGGTACTTTAGTAATTTTTACAA-ACCAGGAGTATTTCAGTAATTTTACAAATTAGG
* *
76266075 GGGTACTTTAGTAA-TTTTACAAACCAGGAGTATTTTAGTAATTTTATAAAT
1 GGGTACTTTAGTAATTTTTACAAACCAGGAGTATTTCAGTAATTTTACAAAT
76266126 CGAGGGTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 4 0.09
55 28 0.62
56 13 0.29
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (56 bp):
GGGTACTTTAGTAATTTTTACAAACCAGGAGTATTTCAGTAATTTTACAAATTAGG
Found at i:76269195 original size:30 final size:32
Alignment explanation
Indices: 76269159--76269225 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
76269149 GGCCCAGATA
* * *
76269159 CCACACGCCT-GTGTGGCGT-GCTCATGTGGC
1 CCACACGCCTAATGTGGCATAGCCCATGTGGC
*
76269189 CCACACGCCTAATTTGGCATAGCCCATGTGGC
1 CCACACGCCTAATGTGGCATAGCCCATGTGGC
76269221 CCACA
1 CCACA
76269226 TGGCCACACC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 10 0.32
31 6 0.19
32 15 0.48
ACGTcount: A:0.18, C:0.36, G:0.25, T:0.21
Consensus pattern (32 bp):
CCACACGCCTAATGTGGCATAGCCCATGTGGC
Found at i:76274623 original size:20 final size:21
Alignment explanation
Indices: 76274583--76274623 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
76274573 GTCTCTTGTA
*
76274583 TTTTGTAAAATTTTCTAAGTT
1 TTTTGTAAAATTTCCTAAGTT
*
76274604 TTTTG-AAAATTTCCTGAGTT
1 TTTTGTAAAATTTCCTAAGTT
76274624 ACTAGTTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.27, C:0.07, G:0.12, T:0.54
Consensus pattern (21 bp):
TTTTGTAAAATTTCCTAAGTT
Found at i:76279908 original size:94 final size:94
Alignment explanation
Indices: 76279808--76280314 Score: 978
Period size: 94 Copynumber: 5.4 Consensus size: 94
76279798 TACGTCCCGA
* ** *
76279808 GGCCGATGCAAGTTTCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCGATGCCATGTCCCCG
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCGATACCATGTCCCCG
76279873 ACATGGTCTTACATTTGCTCTCATAATGT
66 ACATGGTCTTACATTTGCTCTCATAATGT
76279902 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCGATACCATGTCCCCG
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCGATACCATGTCCCCG
76279967 ACATGGTCTTACATTTGCTCTCATAATGT
66 ACATGGTCTTACATTTGCTCTCATAATGT
76279996 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCGATACCATGTCCCCG
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCGATACCATGTCCCCG
76280061 ACATGGTCTTACATTTGCTCTCATAATGT
66 ACATGGTCTTACATTTGCTCTCATAATGT
76280090 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCGATACCATGTCCCCG
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCGATACCATGTCCCCG
76280155 ACATGGTCTTACATTTGCTCTCATAATGT
66 ACATGGTCTTACATTTGCTCTCATAATGT
76280184 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCGATACCATGTCCCCG
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCGATACCATGTCCCCG
76280249 ACATGGTCTTACATTTGCTCTCATAATGT
66 ACATGGTCTTACATTTGCTCTCATAATGT
76280278 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
76280315 ACATGCATGA
Statistics
Matches: 409, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 409 1.00
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.31
Consensus pattern (94 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCGATACCATGTCCCCG
ACATGGTCTTACATTTGCTCTCATAATGT
Found at i:76280692 original size:30 final size:30
Alignment explanation
Indices: 76280651--76280708 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
76280641 AAATTCACAT
* * *
76280651 CTTTGGTAAAATAACCATTTTGCCCCTAGA
1 CTTTGGCAAAATAACCATTCTACCCCTAGA
*
76280681 CTTTGGCAAAATGACCATTCTACCCCTA
1 CTTTGGCAAAATAACCATTCTACCCCTA
76280709 TATTTGAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (30 bp):
CTTTGGCAAAATAACCATTCTACCCCTAGA
Found at i:76285174 original size:27 final size:26
Alignment explanation
Indices: 76285126--76285177 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
76285116 GCGAAGCTGC
*
76285126 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGACACCAGAA
* *
76285152 CAGATATATGTGGCGAGGACACCAGA
1 CAGATAT-TGTGACGAAGACACCAGA
76285178 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGACACCAGAA
Found at i:76312045 original size:39 final size:39
Alignment explanation
Indices: 76312001--76312323 Score: 585
Period size: 39 Copynumber: 8.3 Consensus size: 39
76311991 ATGCAAGACA
*
76312001 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
76312040 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
76312079 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
76312118 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
76312157 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
76312196 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
76312235 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
76312274 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
76312313 CT-GATAATATA
1 CTGGA-AATATA
76312324 ATTTCGGGTT
Statistics
Matches: 277, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
38 2 0.01
39 275 0.99
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
CTGGAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:76325059 original size:27 final size:27
Alignment explanation
Indices: 76325013--76325064 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
76325003 CAGTAATAGT
*
76325013 TGGGCCTAGCCCATTAACAGAATCAGG
1 TGGGCCTAGCCCAATAACAGAATCAGG
76325040 TGGGCCTAAGCCCAAT-ACAGAATCA
1 TGGGCCT-AGCCCAATAACAGAATCA
76325065 ATATCAGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.33, C:0.27, G:0.23, T:0.17
Consensus pattern (27 bp):
TGGGCCTAGCCCAATAACAGAATCAGG
Found at i:76334372 original size:40 final size:40
Alignment explanation
Indices: 76334267--76334412 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
76334257 GCTACTCGTT
*
76334267 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
76334307 CAAATGCCTTCGGGACTGAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
76334347 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AACTCGCA
76334388 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76334413 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 3 0.03
40 73 0.80
41 15 0.16
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:76346078 original size:27 final size:26
Alignment explanation
Indices: 76346061--76346130 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 26
76346051 ATATTAAGTC
76346061 CGCAAACTCAGTGCTATATAATCAACT
1 CGCAAACTCAGTGCTATAT-ATCAACT
* *
76346088 CGCACACTTAGTGCTATATAATCAAACT
1 CGCAAACTCAGTGCTATAT-ATC-AACT
* *
76346116 CGCACACTTAGTGCT
1 CGCAAACTCAGTGCT
76346131 GTACAATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCAAACTCAGTGCTATATATCAACT
Found at i:76346124 original size:28 final size:28
Alignment explanation
Indices: 76346061--76346158 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
76346051 ATATTAAGTC
* *
76346061 CGCAAACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
76346088 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
76346116 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
76346145 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76346159 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 21 0.33
28 23 0.37
29 19 0.30
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:76346622 original size:12 final size:12
Alignment explanation
Indices: 76346605--76346630 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76346595 TGGGCATACT
76346605 TATGTATATATA
1 TATGTATATATA
76346617 TATGTATATATA
1 TATGTATATATA
76346629 TA
1 TA
76346631 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:76350168 original size:20 final size:21
Alignment explanation
Indices: 76350127--76350172 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
76350117 AGCACATGTA
* *
76350127 TTCA-TAAAATTTAAGAATTT
1 TTCATTAAAATTTAACAACTT
76350147 TTCATTAAAATTT-ACAACTT
1 TTCATTAAAATTTAACAACTT
76350167 TTCATT
1 TTCATT
76350173 TTAGTCCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.39, C:0.11, G:0.02, T:0.48
Consensus pattern (21 bp):
TTCATTAAAATTTAACAACTT
Found at i:76361042 original size:36 final size:37
Alignment explanation
Indices: 76361002--76361074 Score: 139
Period size: 36 Copynumber: 2.0 Consensus size: 37
76360992 GTTGTAATAA
76361002 GGCCGCTATTTAAATTTCT-TTTTCCGCTATGGTTTT
1 GGCCGCTATTTAAATTTCTGTTTTCCGCTATGGTTTT
76361038 GGCCGCTATTTAAATTTCTGTTTTCCGCTATGGTTTT
1 GGCCGCTATTTAAATTTCTGTTTTCCGCTATGGTTTT
76361075 ATTTTCTGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 19 0.53
37 17 0.47
ACGTcount: A:0.14, C:0.19, G:0.18, T:0.49
Consensus pattern (37 bp):
GGCCGCTATTTAAATTTCTGTTTTCCGCTATGGTTTT
Found at i:76372123 original size:27 final size:26
Alignment explanation
Indices: 76372085--76372235 Score: 131
Period size: 27 Copynumber: 5.6 Consensus size: 26
76372075 GTAAGCTAGT
* *
76372085 ATTACTAAAATACCCTTTGTTTGTAAA
1 ATTACCAAAATACCC-TAGTTTGTAAA
*
76372112 ATTACCAAAATACCCCAAGTTTGTAAA
1 ATTACCAAAATA-CCCTAGTTTGTAAA
* *
76372139 ATTACCAAAATACCCCTAATTTGTGAA
1 ATTACCAAAATA-CCCTAGTTTGTAAA
* * **
76372166 ATTACTAAAATACCCTCGACCTGTAAA
1 ATTACCAAAATACCCTAG-TTTGTAAA
** * *
76372193 ATTACTGAAATACCCTCGACTTGTAAA
1 ATTACCAAAATACCCTAG-TTTGTAAA
*
76372220 ATTACCAAATTACCCT
1 ATTACCAAAATACCCT
76372236 CAATTTACAG
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
26 4 0.04
27 98 0.93
28 3 0.03
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (26 bp):
ATTACCAAAATACCCTAGTTTGTAAA
Found at i:76372162 original size:54 final size:54
Alignment explanation
Indices: 76372085--76372238 Score: 159
Period size: 54 Copynumber: 2.9 Consensus size: 54
76372075 GTAAGCTAGT
* ** **
76372085 ATTACTAAAATACCCTTTGTTTGTAAAATTACCAAAATACCC-CAAGTTTGTAAA
1 ATTACTAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTCAA-CCTGTAAA
* * * *
76372139 ATTACCAAAATACCCCTAATTTGTGAAATTACTAAAATACCCTCGACCTGTAAA
1 ATTACTAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTCAACCTGTAAA
* * * *
76372193 ATTACTGAAATA-CCCTCGACTTGTAAAATTACCAAATTACCCTCAA
1 ATTACTAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCTCAA
76372239 TTTACAGAAT
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
53 4 0.05
54 75 0.93
55 2 0.02
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (54 bp):
ATTACTAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTCAACCTGTAAA
Found at i:76372236 original size:27 final size:27
Alignment explanation
Indices: 76372105--76372238 Score: 146
Period size: 27 Copynumber: 5.0 Consensus size: 27
76372095 TACCCTTTGT
*
76372105 TTGTAAAATTACCAAAATACCC-CAAGT
1 TTGTAAAATTACCAAAATACCCTCAA-C
*
76372132 TTGTAAAATTACCAAAATACCC-CTAAT
1 TTGTAAAATTACCAAAATACCCTC-AAC
* * *
76372159 TTGTGAAATTACTAAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCCTCAAC
* ** *
76372186 CTGTAAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTACCAAAATACCCTCAAC
*
76372213 TTGTAAAATTACCAAATTACCCTCAA
1 TTGTAAAATTACCAAAATACCCTCAA
76372239 TTTACAGAAT
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
27 90 0.97
28 3 0.03
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.28
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTCAAC
Found at i:76372287 original size:27 final size:26
Alignment explanation
Indices: 76372164--76372289 Score: 96
Period size: 27 Copynumber: 4.7 Consensus size: 26
76372154 CTAATTTGTG
** *
76372164 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACCGAAATACCCTCGA-CTTTA
*
76372191 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCGAAATACCCTCGACTT-TA
*
76372218 AAATTACC-AAATTACCCTC-AATTTA
1 AAATTACCGAAA-TACCCTCGACTTTA
***
76372243 CAGAATTACCGTTGTACCCTCGA-TTTAA
1 -A-AATTACCGAAATACCCTCGACTTT-A
76372271 AAATATACCGAAATACCCT
1 AAAT-TACCGAAATACCCT
76372290 TGTAGGGTAG
Statistics
Matches: 81, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
25 2 0.02
26 12 0.15
27 65 0.80
28 2 0.02
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.29
Consensus pattern (26 bp):
AAATTACCGAAATACCCTCGACTTTA
Found at i:76372306 original size:27 final size:27
Alignment explanation
Indices: 76372276--76372406 Score: 199
Period size: 27 Copynumber: 4.9 Consensus size: 27
76372266 TTTAAAAATA
76372276 TACCGAAATACCCTTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
* *
76372303 TACCGAAATACCCCTGTAGGGAAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
*
76372330 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAT
* *
76372357 CACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAT
* *
76372384 TACCGAGATACCCTTGTGGGGTA
1 TACCGAAATACCCTTGTAGGGTA
76372407 AAACTACCAT
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAT
Found at i:76373157 original size:27 final size:26
Alignment explanation
Indices: 76373119--76373178 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
76373109 ACAATATTAT
* *
76373119 ATATATGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
76373145 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
76373172 ATATCTG
1 ATATCTG
76373179 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:76375074 original size:52 final size:52
Alignment explanation
Indices: 76374997--76375095 Score: 180
Period size: 52 Copynumber: 1.9 Consensus size: 52
76374987 AAACGGGTTG
*
76374997 TGTGACAGCCCTAATTCGACCCTAGTCGGAATGTGGTTTCGAGACCAAGAGT
1 TGTGACAGCCCTAATTCGACACTAGTCGGAATGTGGTTTCGAGACCAAGAGT
*
76375049 TGTGACAGCCCTAATTCGACACTAGTCGGAATGTGGTTTCGGGACCA
1 TGTGACAGCCCTAATTCGACACTAGTCGGAATGTGGTTTCGAGACCA
76375096 CAAAACCGGG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (52 bp):
TGTGACAGCCCTAATTCGACACTAGTCGGAATGTGGTTTCGAGACCAAGAGT
Found at i:76376730 original size:27 final size:27
Alignment explanation
Indices: 76376699--76376875 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
76376689 TAAATTGTAC
76376699 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
76376726 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76376752 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* * *
76376780 GGCACTAAGAGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
76376808 AGCACTAATTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
76376835 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
76376862 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
76376876 NNNNNNNNNN
Statistics
Matches: 120, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
27 100 0.83
28 20 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:76376813 original size:82 final size:81
Alignment explanation
Indices: 76376700--76376855 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
76376690 AAATTGTACA
* * * *
76376700 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
76376764 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
76376781 GCACTAAGAGTGCGAGTCTGACTATGTAGCACTAATTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGAGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
76376846 TGCGAGTTGA
65 TGCGAATTGA
76376856 TTATATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.77
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGAGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:76384253 original size:27 final size:27
Alignment explanation
Indices: 76384223--76384312 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
76384213 AAATTGTACA
* *
76384223 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGAT
* *
76384250 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGAT
* **
76384277 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGAT
76384304 GCACTAAGT
1 GCACTAAGT
76384313 NNNNNNNNNN
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGAT
Found at i:76391138 original size:47 final size:44
Alignment explanation
Indices: 76391033--76391161 Score: 136
Period size: 47 Copynumber: 2.8 Consensus size: 44
76391023 ATGTTTCGAG
*
76391033 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTCGTCTCAAT
* *
76391079 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC-TCTTAATGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCGTCTCAA--T
* *
76391126 GGCTGATGCATGT-CCAGACATGTCTTACACTAGCTC
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
76391162 ACAATAACCC
Statistics
Matches: 72, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
45 19 0.26
46 17 0.24
47 20 0.28
48 16 0.22
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCGTCTCAAT
Found at i:76393823 original size:28 final size:28
Alignment explanation
Indices: 76393766--76393826 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
76393756 TAGGAAGTAG
*
76393766 TTGGGCCTGATGGGCCATGTGAATATGA
1 TTGGGCCTGATGGGCCATGTGAAGATGA
76393794 TTGGGCCTGATGGGCCATGTGAACGA-GA
1 TTGGGCCTGATGGGCCATGTGAA-GATGA
76393822 TTGGG
1 TTGGG
76393827 ATTGCGACAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 30 0.97
29 1 0.03
ACGTcount: A:0.20, C:0.15, G:0.39, T:0.26
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATGTGAAGATGA
Found at i:76394136 original size:100 final size:100
Alignment explanation
Indices: 76393963--76394162 Score: 391
Period size: 100 Copynumber: 2.0 Consensus size: 100
76393953 AGCTCTGATT
76393963 TAGTTAATTGCATGTGAATTTAGTTAATAGGACTTATGTGTGACACTTTTGAAATGTGATAGGTT
1 TAGTTAATTGCATGTGAATTTAGTTAATAGGACTTATGTGTGACACTTTTGAAATGTGATAGGTT
76394028 AATCTATAAGGATCTATTAGTGCATGTAATCAAAG
66 AATCTATAAGGATCTATTAGTGCATGTAATCAAAG
*
76394063 TAGTTAATTGCATGTGAATTTATTTAATAGGACTTATGTGTGACACTTTTGAAATGTGATAGGTT
1 TAGTTAATTGCATGTGAATTTAGTTAATAGGACTTATGTGTGACACTTTTGAAATGTGATAGGTT
76394128 AATCTATAAGGATCTATTAGTGCATGTAATCAAAG
66 AATCTATAAGGATCTATTAGTGCATGTAATCAAAG
76394163 GGGTGGACTT
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 99 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (100 bp):
TAGTTAATTGCATGTGAATTTAGTTAATAGGACTTATGTGTGACACTTTTGAAATGTGATAGGTT
AATCTATAAGGATCTATTAGTGCATGTAATCAAAG
Found at i:76397087 original size:40 final size:40
Alignment explanation
Indices: 76397003--76397227 Score: 237
Period size: 40 Copynumber: 5.7 Consensus size: 40
76396993 TTGAATGATG
* * * * *
76397003 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
76397043 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76397083 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76397122 TCCAGG-TTAATTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCC-GGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76397162 TCC-GAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGA-CTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
76397203 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
76397228 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 18, Indels: 18
0.81 0.09 0.09
Matches are distributed among these distances:
38 1 0.01
39 30 0.19
40 116 0.73
41 11 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76397245 original size:80 final size:79
Alignment explanation
Indices: 76397056--76397260 Score: 204
Period size: 80 Copynumber: 2.6 Consensus size: 79
76397046 GGACTAAGAT
** * *
76397056 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCC-GGTTAAGTCCCGAAGGCATTGGTGCGAGTTACT
*
76397119 AAATCCAGGTTAATTC
64 AAATCCAGGCTAATTC
** * *
76397135 CCGAAGGCATTTGTGCGAGTTACTAAATCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGAACGAGTGACTAAATCCG-GTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA
*
76397200 TAA-CCGGGCT-ATGTC
65 -AATCCAGGCTAAT-TC
* * *
76397215 CCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAGTCCCGAAGG
76397261 TAGGTGATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
78 2 0.02
79 48 0.44
80 57 0.52
81 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAA
ATCCAGGCTAATTC
Done.