Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 233 of 279
Found at i:76397880 original size:22 final size:22
Alignment explanation
Indices: 76397850--76397894 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
76397840 GTGTGGATAT
76397850 GCTTAACAAGGATGGGCCATGG
1 GCTTAACAAGGATGGGCCATGG
* *
76397872 GCTTGACAAGGATTGGCCATGG
1 GCTTAACAAGGATGGGCCATGG
76397894 G
1 G
76397895 AATGGTTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.24, C:0.18, G:0.38, T:0.20
Consensus pattern (22 bp):
GCTTAACAAGGATGGGCCATGG
Found at i:76402641 original size:285 final size:285
Alignment explanation
Indices: 76402131--76402700 Score: 1086
Period size: 285 Copynumber: 2.0 Consensus size: 285
76402121 GTGTTCCAAG
76402131 GAATTCAGAACTCATTTCGATGATTCTGAACGAAGCCCATTGTAGCCGAATGTCAATTCACCCGG
1 GAATTCAGAACTCATTTCGATGATTCTGAACGAAGCCCATTGTAGCCGAATGTCAATTCACCCGG
* *
76402196 GGAGTACGAAAATGTACAACGATTTGAAACGTCGATTTTGGTGGCATGGTATGAAACGGGACATC
66 GGAGTACGAAAATGTACAACGATTTGAAACGTCGATTTTAGTGGCATGGTATGAAACGAGACATC
76402261 TCCGACTTTGTTTCGAGATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCTTCAGG
131 TCCGACTTTGTTTCGAGATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCTTCAGG
76402326 ATTACTTCAGCCGATCATGATACCTGAGTGGAAATGGGATCGAGTCACAATGGACTTTGTGTCCG
196 ATTACTTCAGCCGATCATGATACCTGAGTGGAAATGGGATCGAGTCACAATGGACTTTGTGTCCG
76402391 GACTGCCATTGTCAGCAAGTAAGAA
261 GACTGCCATTGTCAGCAAGTAAGAA
76402416 GAATTCAGAACTCATTTCGATGATTCTGAACGAAGCCCATTGTAGCCGAATGTCAATTCACCCGG
1 GAATTCAGAACTCATTTCGATGATTCTGAACGAAGCCCATTGTAGCCGAATGTCAATTCACCCGG
* *
76402481 GGAGTACGAAAATGTACAACGATTTGAAACGTTGGTTTTAGTGGCATGGTATGAAACGAGACATC
66 GGAGTACGAAAATGTACAACGATTTGAAACGTCGATTTTAGTGGCATGGTATGAAACGAGACATC
* *
76402546 TCCGACTTTGTTTCGAGATGTTTAATATGTCAACAGGTGAAAGTGGAACATCAAGTGCCTTCAGG
131 TCCGACTTTGTTTCGAGATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCTTCAGG
76402611 ATTACTTCAGCCGATCATGATACCTGAGTGGAAATGGGATCGAGTCACAATGGACTTTGTGTCCG
196 ATTACTTCAGCCGATCATGATACCTGAGTGGAAATGGGATCGAGTCACAATGGACTTTGTGTCCG
76402676 GACTGCCATTGTCAGCAAGTAAGAA
261 GACTGCCATTGTCAGCAAGTAAGAA
76402701 AGATGCGATT
Statistics
Matches: 279, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
285 279 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (285 bp):
GAATTCAGAACTCATTTCGATGATTCTGAACGAAGCCCATTGTAGCCGAATGTCAATTCACCCGG
GGAGTACGAAAATGTACAACGATTTGAAACGTCGATTTTAGTGGCATGGTATGAAACGAGACATC
TCCGACTTTGTTTCGAGATGTTTAATATGTCAACAAGTGAAAGCGGAACATCAAGTGCCTTCAGG
ATTACTTCAGCCGATCATGATACCTGAGTGGAAATGGGATCGAGTCACAATGGACTTTGTGTCCG
GACTGCCATTGTCAGCAAGTAAGAA
Found at i:76405356 original size:39 final size:40
Alignment explanation
Indices: 76405261--76405522 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
76405251 TTGAATGATG
*
76405261 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
76405299 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
76405340 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
76405379 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
76405418 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
76405457 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
76405496 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
76405523 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:76406880 original size:65 final size:66
Alignment explanation
Indices: 76406776--76406904 Score: 199
Period size: 65 Copynumber: 2.0 Consensus size: 66
76406766 CGACAAGTAC
*
76406776 GCAGATTAGGCAGTGTCTGGAAAATATCTTTATAAGGGG-TTATAGTCTGTTAACACCTCGTGTA
1 GCAGATTAGGCAGTGTCTGGAAAATATCTTTATAAGGGGTTTAAAGTCTGTTAACACCTCGTGTA
76406840 T
66 T
* * *
76406841 GCAGATT-GGCAGTGTCTGGGAAATTTTTTTTATAAGGGGTTTAAAGTCTGTTAACACCTCGTGT
1 GCAGATTAGGCAGTGTCT-GGAAAATATCTTTATAAGGGGTTTAAAGTCTGTTAACACCTCGTGT
76406905 CCGACTCCGG
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
64 10 0.17
65 25 0.43
66 23 0.40
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (66 bp):
GCAGATTAGGCAGTGTCTGGAAAATATCTTTATAAGGGGTTTAAAGTCTGTTAACACCTCGTGTA
T
Found at i:76407357 original size:40 final size:40
Alignment explanation
Indices: 76407295--76407514 Score: 236
Period size: 40 Copynumber: 5.5 Consensus size: 40
76407285 TATTCGAATG
* *
76407295 ATATCCGGGCTAAG-TCCTGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTAGTGACT
* * *
76407335 ATATCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
76407375 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
*
76407415 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * * **
76407455 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
76407494 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGAT-CCGAAG
76407515 ATACTTGGGT
Statistics
Matches: 152, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
37 1 0.01
38 12 0.08
39 17 0.11
40 117 0.77
41 5 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:76407428 original size:80 final size:79
Alignment explanation
Indices: 76407295--76407514 Score: 268
Period size: 80 Copynumber: 2.8 Consensus size: 79
76407285 TATTCGAATG
* * * * *
76407295 ATATCCGGGCTAAGTCCTGAAGGCTTTTATGCTAGTGACTATATCCAGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCC-GGCTAAGATCCCGAAGGC
*
76407359 ATTTGTGCGAGTTG-CT
64 ATTTGTGCGAG-TGACC
*
76407375 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCC-GGCTAAGATCCCGAAGGC
*
76407439 ATTTGTGCTAGTGACC
64 ATTTGTGCGAGTGACC
* * *
76407455 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCCGGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGCTAAGATCCCGAAG
76407515 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
78 14 0.11
79 20 0.16
80 89 0.72
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGCTAAGATCCCGAAGGCAT
TTGTGCGAGTGACC
Found at i:76409802 original size:40 final size:40
Alignment explanation
Indices: 76409515--76409781 Score: 473
Period size: 40 Copynumber: 6.7 Consensus size: 40
76409505 ATTTGAATGA
76409515 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
76409555 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
76409595 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
76409635 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
76409675 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
* * * *
76409715 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTT
*
76409755 TATCCGGGCTAAGACCCGAAGGCATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTT
76409782 GTGTGAGTTG
Statistics
Matches: 222, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
40 219 0.99
41 3 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
Found at i:76409802 original size:80 final size:80
Alignment explanation
Indices: 76409514--76409845 Score: 465
Period size: 80 Copynumber: 4.2 Consensus size: 80
76409504 CATTTGAATG
*
76409514 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
76409579 TTTATGCTAGTGATT
66 TTTATGCTAGTGATT
* *
76409594 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
76409659 TTTATGCTAGTGATT
66 TTTATGCTAGTGATT
*
76409674 TTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
* *
76409739 TTTGTGCGAGTTGA-T
66 TTTATGCTAG-TGATT
* * * * * *
76409754 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CTATACCCGGGTTAAGACCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AG-TGATTTTATCCGGGCTAAGACCCGAAGG
* * * *
76409817 CAATTGTGCTTGTGGTT
64 CATTTATGCTAGTGATT
76409834 ATATCC-GGCTAA
1 ATATCCGGGCTAA
76409846 ATTCTGAAGA
Statistics
Matches: 233, Mismatches: 15, Indels: 9
0.91 0.06 0.04
Matches are distributed among these distances:
79 9 0.04
80 219 0.94
81 5 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
TTTATGCTAGTGATT
Found at i:76409808 original size:40 final size:40
Alignment explanation
Indices: 76409518--76409825 Score: 266
Period size: 40 Copynumber: 7.7 Consensus size: 40
76409508 TGAATGATAT
* * * * *
76409518 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAC
* * * * *
76409558 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAC
* * * * *
76409598 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAC
* * * * *
76409638 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAC
* * * * *
76409678 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATAC
*
76409718 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAC
* *
76409758 CCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAC
* *
76409798 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
76409826 TTGTGGTTAT
Statistics
Matches: 257, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
40 254 0.99
41 3 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATAC
Found at i:76416536 original size:38 final size:38
Alignment explanation
Indices: 76416485--76416560 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
76416475 TTCATCCTTT
*
76416485 TTCATTTCTTTTGGCCGACAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76416523 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
76416561 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:76417823 original size:40 final size:40
Alignment explanation
Indices: 76417768--76417963 Score: 218
Period size: 40 Copynumber: 4.9 Consensus size: 40
76417758 ATTATTGATA
*
76417768 CCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTC
1 CCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGAC
76417808 CCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGAC
1 CCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGAC
* * *
76417848 CCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGAC
1 CCGAAGGCATTTATGCTAG-TGATTTTATCCGGGCTAAGAC
* * * * * *
76417888 CCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGAC
1 CCGAAGGCATTTATGCTAG-TGATTTTATCCGGGCTAAGAC
* * * * *
76417928 CCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAA
76417964 ATTCCGAAGA
Statistics
Matches: 141, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 7 0.05
40 131 0.93
41 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGAC
Found at i:76419469 original size:62 final size:62
Alignment explanation
Indices: 76419372--76419496 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
76419362 CTGTGAGCTG
76419372 ATCTATTAACGGTTGTTTATAGGAGAAATCATGTAGGAGATCTCGTCGGGGAGTATTGCAAA
1 ATCTATTAACGGTTGTTTATAGGAGAAATCATGTAGGAGATCTCGTCGGGGAGTATTGCAAA
76419434 ATCTATTAACGGTTGTTTATAGGAGAAATCATGTAGGAGATCTCGTCGGGGAGTATTGCAAA
1 ATCTATTAACGGTTGTTTATAGGAGAAATCATGTAGGAGATCTCGTCGGGGAGTATTGCAAA
76419496 A
1 A
76419497 CAGGTGTGTA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.31, C:0.11, G:0.27, T:0.30
Consensus pattern (62 bp):
ATCTATTAACGGTTGTTTATAGGAGAAATCATGTAGGAGATCTCGTCGGGGAGTATTGCAAA
Found at i:76420238 original size:25 final size:26
Alignment explanation
Indices: 76420167--76420263 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
76420157 GAGGAAGTGC
76420167 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
76420193 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
76420219 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
76420244 AAAAGGG-TTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
76420264 ATTAAAAGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
24 2 0.03
25 30 0.45
26 34 0.52
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:76420244 original size:51 final size:49
Alignment explanation
Indices: 76420167--76420276 Score: 168
Period size: 51 Copynumber: 2.2 Consensus size: 49
76420157 GAGGAAGTGC
76420167 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGG-TTATGCCCCAG-TTATT
*
76420218 GAAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGTTATGCCCCAGTTATT
76420267 AAAAGAGGCT
1 AAAAG-GGCT
76420277 AGGCCTCCAG
Statistics
Matches: 56, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
48 5 0.09
49 9 0.16
50 10 0.18
51 22 0.39
52 10 0.18
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGTTATGCCCCAGTTATT
Found at i:76429241 original size:30 final size:30
Alignment explanation
Indices: 76429156--76429252 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
76429146 TAAACTAAAA
* *
76429156 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
76429186 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
76429216 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
76429245 ATGAGCTA
1 -TGAGCTA
76429253 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:76431523 original size:30 final size:29
Alignment explanation
Indices: 76431478--76431562 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 29
76431468 TTCTTTTGTT
*
76431478 TCAATTTCTTTTTCATCTTCTTTTTCACTC
1 TCAATTTCTTTTTCAT-TTCTTTTTCAATC
76431508 TCAAATTTC-TTTTCATTCTCTTTTTCAATC
1 TC-AATTTCTTTTTCATT-TCTTTTTCAATC
*
76431538 TCATTTTCTTTTTCATTTTCTTTTT
1 TCAATTTCTTTTTCA-TTTCTTTTT
76431563 GCTTTTCAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
29 6 0.12
30 35 0.71
31 8 0.16
ACGTcount: A:0.14, C:0.22, G:0.00, T:0.64
Consensus pattern (29 bp):
TCAATTTCTTTTTCATTTCTTTTTCAATC
Found at i:76431562 original size:18 final size:18
Alignment explanation
Indices: 76431513--76431568 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
76431503 CACTCTCAAA
*
76431513 TTTC-TTTTCATTCTCTT
1 TTTCATTTTCATTTTCTT
* *
76431530 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
76431548 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
76431567 TT
1 TT
76431569 CAAAGGCTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
17 4 0.13
18 22 0.71
19 5 0.16
ACGTcount: A:0.09, C:0.20, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:76431569 original size:12 final size:12
Alignment explanation
Indices: 76431538--76431562 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76431528 TTTTTCAATC
76431538 TCATTTTCTTTT
1 TCATTTTCTTTT
76431550 TCATTTTCTTTT
1 TCATTTTCTTTT
76431562 T
1 T
76431563 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:76431580 original size:12 final size:12
Alignment explanation
Indices: 76431565--76431595 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
76431555 TTCTTTTTGC
76431565 TTTTCAAAGGCT
1 TTTTCAAAGGCT
76431577 TTTTCAAAGGCT
1 TTTTCAAAGGCT
76431589 TTTTCAA
1 TTTTCAA
76431596 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:76431653 original size:5 final size:5
Alignment explanation
Indices: 76431643--76431699 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
76431633 CTCTTGCCTC
*
76431643 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
76431690 TCTTT TCTTT
1 TCTTT TCTTT
76431700 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:76431683 original size:15 final size:14
Alignment explanation
Indices: 76431643--76431699 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
76431633 CTCTTGCCTC
*
76431643 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
76431658 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
76431673 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
76431690 TCTTTTCTTT
1 TCTTTTCTTT
76431700 GTTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:76431700 original size:21 final size:21
Alignment explanation
Indices: 76431643--76431710 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
76431633 CTCTTGCCTC
* *
76431643 TCTTTTCTTTT-TATTTCATTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
76431664 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
76431685 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
76431705 CTCTTT
1 -TCTTT
76431711 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.18
21 27 0.69
22 5 0.13
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:76434321 original size:30 final size:30
Alignment explanation
Indices: 76434236--76434332 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
76434226 TAAACTAAAA
* *
76434236 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
76434266 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
*
76434296 TGAGCTAAGGTTTAGCTTGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
76434325 ATGAGCTA
1 -TGAGCTA
76434333 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:76443562 original size:28 final size:27
Alignment explanation
Indices: 76443526--76443612 Score: 68
Period size: 28 Copynumber: 3.0 Consensus size: 27
76443516 AAGTTAACTG
*
76443526 GGCCTTAGCCCATATCAGTATTAATCTA
1 GGCC-TAGCCCATATCAGTATAAATCTA
*
76443554 GGCCATAGCCCCT-TACAGTATCAGAATATACTA
1 GGCC-TAGCCCATAT-CAGTAT---AA-AT-CTA
*
76443587 GGCCTAGCCCATATCAGTATCAATCT
1 GGCCTAGCCCATATCAGTATAAATCT
76443613 GGGCTGTAGC
Statistics
Matches: 47, Mismatches: 5, Indels: 15
0.70 0.07 0.22
Matches are distributed among these distances:
27 3 0.06
28 19 0.40
29 1 0.02
31 1 0.02
32 15 0.32
33 8 0.17
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
GGCCTAGCCCATATCAGTATAAATCTA
Found at i:76445166 original size:25 final size:22
Alignment explanation
Indices: 76445112--76445166 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
76445102 TTTCGGCTAG
76445112 AGAAGAAAAGAAGGAGAAAAGA
1 AGAAGAAAAGAAGGAGAAAAGA
* *
76445134 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
76445159 AGGAAGAA
1 A-GAAGAA
76445167 TTCGACACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:76445799 original size:3 final size:3
Alignment explanation
Indices: 76445791--76445825 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
76445781 AAACATACGA
* *
76445791 AAT AAT AAT AAT AAA AAT AAT AAT AAT AAT GAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
76445826 ATCCAAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:76445810 original size:15 final size:15
Alignment explanation
Indices: 76445790--76445819 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
76445780 CAAACATACG
76445790 AAATAATAATAATAA
1 AAATAATAATAATAA
76445805 AAATAATAATAATAA
1 AAATAATAATAATAA
76445820 TGATAAATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AAATAATAATAATAA
Found at i:76447263 original size:55 final size:53
Alignment explanation
Indices: 76447199--76447327 Score: 150
Period size: 53 Copynumber: 2.4 Consensus size: 53
76447189 AGGAAATCAT
* * *
76447199 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAGGATCCCAC
1 GTAAGACCATGTCAAGACATGGCAATGAT-AACT-CTATAAGGCAAGCATACCAC
* * * * * *
76447254 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTTATAAGGCAAGCATACCAC
1 GTAAGACCATGTCAAGACATGGCAATGATAACTCTATAAGGCAAGCATACCAC
*
76447307 ATAAGACCATGTCAAGACATG
1 GTAAGACCATGTCAAGACATG
76447328 AAAATGGTAA
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
53 35 0.56
54 2 0.03
55 25 0.40
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (53 bp):
GTAAGACCATGTCAAGACATGGCAATGATAACTCTATAAGGCAAGCATACCAC
Found at i:76447314 original size:53 final size:53
Alignment explanation
Indices: 76447235--76447342 Score: 144
Period size: 53 Copynumber: 2.0 Consensus size: 53
76447225 GATAAACTAC
* * * * ** *
76447235 TATAAGGCAAGGATCCCACGTAAGACCATGCCAAGGCATGGCAATGGTGAGTT
1 TATAAGGCAAGCATACCACATAAGACCATGCCAAGACATGAAAATGGTAAGTT
*
76447288 TATAAGGCAAGCATACCACATAAGACCATGTCAAGACATGAAAATGGTAAGTT
1 TATAAGGCAAGCATACCACATAAGACCATGCCAAGACATGAAAATGGTAAGTT
76447341 TA
1 TA
76447343 GAAAGGAAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (53 bp):
TATAAGGCAAGCATACCACATAAGACCATGCCAAGACATGAAAATGGTAAGTT
Found at i:76454485 original size:12 final size:12
Alignment explanation
Indices: 76454470--76454512 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
76454460 TTATTTTTTT
*
76454470 ATTTTTTTTCAA
1 ATTTTTTTTCGA
76454482 ATTTTTTTTCGA
1 ATTTTTTTTCGA
76454494 ATTTTTTTT-GA
1 ATTTTTTTTCGA
76454505 ATTTTTTT
1 ATTTTTTT
76454513 AACTTGTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 10 0.33
12 20 0.67
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.72
Consensus pattern (12 bp):
ATTTTTTTTCGA
Found at i:76454498 original size:10 final size:11
Alignment explanation
Indices: 76454472--76454512 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
76454462 ATTTTTTTAT
*
76454472 TTTTTTTCAAA
1 TTTTTTTCGAA
76454483 TTTTTTTTCGAA
1 -TTTTTTTCGAA
*
76454495 TTTTTTTTGAA
1 TTTTTTTCGAA
76454506 TTTTTTT
1 TTTTTTT
76454513 AACTTGTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.73
Consensus pattern (11 bp):
TTTTTTTCGAA
Found at i:76458792 original size:39 final size:39
Alignment explanation
Indices: 76458741--76458933 Score: 246
Period size: 39 Copynumber: 4.9 Consensus size: 39
76458731 TGAGGTCCGT
76458741 AGGC-TTTATGCTGGTATTATATCCGGGCAAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCAAAGTCCCGA
* * *
76458779 AGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCAAAGTCCCGA
* * * *
76458818 AGGCATTTGTGCTGGTGTTATATCCAGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCAAAGTCCCGA
* * *
76458857 AGGCATTTATGCTGGTATTATATCTGGGCTAGAGTCCCGC
1 AGGCATTTATGCTGGTATTATATCCGGGC-AAAGTCCCGA
*
76458897 AGGC-TTTATGTTGGTATTATATCCGGGCTTAAAGTCC
1 AGGCATTTATGCTGGTATTATATCCGGGC--AAAGTCC
76458934 TGCATGCTTT
Statistics
Matches: 138, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
38 4 0.03
39 116 0.84
40 18 0.13
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (39 bp):
AGGCATTTATGCTGGTATTATATCCGGGCAAAGTCCCGA
Found at i:76458852 original size:78 final size:78
Alignment explanation
Indices: 76458741--76458925 Score: 273
Period size: 78 Copynumber: 2.4 Consensus size: 78
76458731 TGAGGTCCGT
* * *
76458741 AGGCTTTATGCTGGTATTATATCCGGGCAAAGTCCCGAAGGCATTTGTGCTGGTGTTATATCCGG
1 AGGCTTTATGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTGGTATTATATCCGG
76458806 GCTA-AGTCCCGA
66 GCTAGAGTCCCGA
* * * *
76458818 AGGCATTTGTGCTGGTGTTATATCCAGGCTAAGTCCCGAAGGCATTTATGCTGGTATTATATCTG
1 AGGC-TTTATGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTGGTATTATATCCG
*
76458883 GGCTAGAGTCCCGC
65 GGCTAGAGTCCCGA
*
76458897 AGGCTTTATGTTGGTATTATATCCGGGCT
1 AGGCTTTATGCTGGTATTATATCCGGGCT
76458926 TAAAGTCCTG
Statistics
Matches: 94, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
77 4 0.04
78 79 0.84
79 11 0.12
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.32
Consensus pattern (78 bp):
AGGCTTTATGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTGGTATTATATCCGG
GCTAGAGTCCCGA
Found at i:76459088 original size:18 final size:18
Alignment explanation
Indices: 76459065--76459100 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
76459055 AAGTTGGTCA
76459065 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
76459083 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
76459101 TTATATGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.50
Consensus pattern (18 bp):
GGTATGTATTATATACTT
Found at i:76462577 original size:16 final size:16
Alignment explanation
Indices: 76462556--76462587 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
76462546 CAAAAAGTGG
76462556 TTTCGGGACCACAAAA
1 TTTCGGGACCACAAAA
76462572 TTTCGGGACCACAAAA
1 TTTCGGGACCACAAAA
76462588 CCGAATCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (16 bp):
TTTCGGGACCACAAAA
Found at i:76464884 original size:39 final size:39
Alignment explanation
Indices: 76464825--76465009 Score: 284
Period size: 39 Copynumber: 4.8 Consensus size: 39
76464815 TGAGGTCCGC
76464825 AGGC-TTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
* * *
76464863 AGGCATTTGTGTTGGTGTTATATCCGGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
* * *
76464902 AGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCTA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
*
76464941 AGGCATTTATGCTGGTATTATATCCGGGCTAGAGTCCCGC
1 AGGCATTTATGCTGGTATTATATCCGGGCTA-AGTCCCGA
76464981 AGGC-TTTATGCTGGTATTATATCCGGGCT
1 AGGCATTTATGCTGGTATTATATCCGGGCT
76465010 TAAAGTCCTG
Statistics
Matches: 136, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 4 0.03
39 122 0.90
40 10 0.07
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.33
Consensus pattern (39 bp):
AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
Found at i:76465176 original size:18 final size:18
Alignment explanation
Indices: 76465153--76465187 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
76465143 AGTTGGTCAA
76465153 GTATGTATTATATACTTG
1 GTATGTATTATATACTTG
76465171 GTATGTATTATATACTT
1 GTATGTATTATATACTT
76465188 TTATATGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.14, T:0.51
Consensus pattern (18 bp):
GTATGTATTATATACTTG
Found at i:76467365 original size:14 final size:14
Alignment explanation
Indices: 76467333--76467370 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
76467323 CATCTTAGTC
* *
76467333 TAATTAAATGAGTT
1 TAATTTAATGAATT
76467347 T-ATTTAATGAATT
1 TAATTTAATGAATT
76467360 TAATTTAATGA
1 TAATTTAATGA
76467371 GTTGCTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (14 bp):
TAATTTAATGAATT
Found at i:76468384 original size:29 final size:29
Alignment explanation
Indices: 76468351--76468410 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
76468341 ATAACCAAAC
* * *
76468351 CTACAAAAACTTTATATCCATAAATCCAT
1 CTACAAAAACATCATATCCATAAACCCAT
*
76468380 CTACATAAACATCATATCCATAAACCCAT
1 CTACAAAAACATCATATCCATAAACCCAT
76468409 CT
1 CT
76468411 TTGAATCCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.43, C:0.28, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACATCATATCCATAAACCCAT
Found at i:76470537 original size:61 final size:62
Alignment explanation
Indices: 76470462--76470587 Score: 218
Period size: 61 Copynumber: 2.0 Consensus size: 62
76470452 ACTGAAACCG
* *
76470462 ACCTGTTACATCACTCTCAATTCTTTATCAAAAAAAT-TCTCTTTCAATTCTCTCTCAATAT
1 ACCTGTTACATCACTCTCAATTCTTTATCAAAAAAATATCACTTTCAATTCTCTCTCAACAT
*
76470523 ACCTGTTACATCACTCTCAATTCTTTATGAAAAAAATATCACTTTCAATTCTCTCTCAACAT
1 ACCTGTTACATCACTCTCAATTCTTTATCAAAAAAATATCACTTTCAATTCTCTCTCAACAT
76470585 ACC
1 ACC
76470588 GGTATAGTAA
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
61 36 0.59
62 25 0.41
ACGTcount: A:0.33, C:0.27, G:0.02, T:0.38
Consensus pattern (62 bp):
ACCTGTTACATCACTCTCAATTCTTTATCAAAAAAATATCACTTTCAATTCTCTCTCAACAT
Found at i:76471348 original size:325 final size:322
Alignment explanation
Indices: 76470523--76472207 Score: 2157
Period size: 325 Copynumber: 5.2 Consensus size: 322
76470513 CTCTCAATAT
* *
76470523 ACCTGTTACATCACTCTCAATTCTTTATGAAAAAAATATCACTTTCAATTCTCTCTCAACATACC
1 ACCTGTTACATCACTCTCAATTCTTTAT-AAAAAAAAATCACTTTCAATTCTCTCTCAATATACC
*
76470588 GGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTGCTCAGTTTACAGAAATGAGGTCCC
65 TGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTGCTCAGTTTACAGAAATGAGGTCCC
* * * * *
76470653 GATATCTCATTTCCCGAAATGACTTAACTTCCCGGACGAACCTCTTGTACTTAATTATTTGTTCA
130 GATATCTCATTT-CCGAAACGACTTGACTTTCCGGATGAACCTCTTGTACTTAACTATTTGTTCA
76470718 ATTAGCAAATAAA-TATCAAATCAAAA-TTTACTAGAAACTATATCTAACTCGTATAAAATAAAT
194 ATTAGCAAA-AAATTATCAAAT-AAAAGTTTACTAGAAACTATATCTAACTCGTATAAAAT--A-
* * * *
76470781 AATAATAATTACAGAATCATTGCTAGAATTGTGATCCTGAAAGCACTGTTTTCAGCTGCGCA--G
254 AATAATAATTACAGAATCATTGTTAGAATTGTGGTCCTGAAACCACTGTTTTCAACT-C-CATTG
76470844 --AA--
317 AAAATG
* * *
76470846 A------ACATCACTCTCAATTATTTATATAAAAAAAACCACTTTCAATTCTCTCTCAATATACT
1 ACCTGTTACATCACTCTCAATTCTTTATA-AAAAAAAATCACTTTCAATTCTCTCTCAATATACC
* * ** *
76470905 TGTATAGTAAATTCGTAAATATTTAATAAAAATATTTTTTTTGCTTAGTTTACAGAAACAAGGTT
65 TGTATAGTAAATCCGTAAATATTTAATAAAAATA--TTTTTTGCTCAGTTTACAGAAATGAGGTC
* *
76470970 CCGATATCTCATTTCTCGAAACCACTTGACTTTCGGGATGAACCTCTTGTACTTAACTATTTGTT
128 CCGATATCTCATTTC-CGAAACGACTTGACTTTCCGGATGAACCTCTTGTACTTAACTATTTGTT
* *
76471035 CAATTAGCAAAAAATTATCAAATAAAAGATTACTAGAAACTATATTTAACTCGTATAAAATAAAT
192 CAATTAGCAAAAAATTATCAAATAAAAGTTTACTAGAAACTATATCTAACTCGTATAAAATAAAT
* * * * * * *
76471100 AATAATTACGGAATCATTATTAGAATTGTGGTTCTGAAACCATTATTTTCAACTCTATTGAAAAC
257 AATAATTACAGAATCATTGTTAGAATTGTGGTCCTGAAACCACTGTTTTCAACTCCATTGAAAAT
76471165 G
322 G
* *
76471166 ACCTGTTACATCACTCTCAATTCTTTATGAAAAAAATATCACTTTCAATTCTCTCTCAACATACC
1 ACCTGTTACATCACTCTCAATTCTTTAT-AAAAAAAAATCACTTTCAATTCTCTCTCAATATACC
* * *
76471231 GGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTTGCTTAGTTTACAGAAATGATGTCC
65 TGTATAGTAAATCCGTAAATATTTAATAAAAATA-TTTTTTGCTCAGTTTACAGAAATGAGGTCC
* * ** * *
76471296 CGAAATCTCATTTGCCGAAACCACTTGACTTTCAAGATGAACCTCATGTACTTAACAATTTGTTC
129 CGATATCTCATTT-CCGAAACGACTTGACTTTCCGGATGAACCTCTTGTACTTAACTATTTGTTC
* * * *
76471361 AATTAGCAAAAAGTTATAAAATAAAAGTTTACTAGAAACTATATATAACTCGTATAAATTAAATA
193 AATTAGCAAAAAATTATCAAATAAAAGTTTACTAGAAACTATATCTAACTCGTATAAAATAAATA
* * *
76471426 ATAATTATAGAATTATTGTCAGAATTGTGGTCCTGAAACCACTGTTTTCAACTCCATT-AAAATG
258 ATAATTACAGAATCATTGTTAGAATTGTGGTCCTGAAACCACTGTTTTCAACTCCATTGAAAATG
* * * *
76471490 ACATGGTAGATCACTCTCAATTCTTTATCAAAAAAAAAAGAATCTCTTTCAATTCTCTCTCAATA
1 ACCTGTTACATCACTCTCAATTCTTTAT----AAAAAAA-AATCACTTTCAATTCTCTCTCAATA
* *
76471555 TACTTGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTGCTCAGTTTACAGAAACGAGG
61 TACCTGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTGCTCAGTTTACAGAAATGAGG
* * * * ** *
76471620 TCCCAATATCTCATTTCACAAAACGACATGAGTTTTGGGATGACCCTCTTGTACTTAACTATTTG
126 TCCCGATATCTCATTTC-CGAAACGACTTGACTTTCCGGATGAACCTCTTGTACTTAACTATTTG
* * * * *
76471685 TTCAATTAGCAAAAAAAATTATGAAATCAAAA-TTTACTAAAAACCATATCTAGCTCATATAAAA
190 TTCAATTAGC--AAAAAATTATCAAAT-AAAAGTTTACTAGAAACTATATCTAACTCGTATAAAA
* * * *
76471749 TAACTAATAATTACGGAATCATTGTTAGAATTGTGGTCCTAAAACTACTGTTTTCAACTCCATTG
252 TAAATAATAATTACAGAATCATTGTTAGAATTGTGGTCCTGAAACCACTGTTTTCAACTCCATTG
*
76471814 -ACATG
317 AAAATG
* * * *
76471819 ACCTGTTAGATCACTCTCAATTTTTTATAAAAAAATAATCTCTTTCAATTCTATCTCAATATACC
1 ACCTGTTACATCACTCTCAATTCTTTATAAAAAAA-AATCACTTTCAATTCTCTCTCAATATACC
76471884 TGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTGCTCAGTTTACAGAAATGAGGTCCC
65 TGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTGCTCAGTTTACAGAAATGAGGTCCC
* * * * *
76471949 GATATCTCATTTCCCGAAATGACTTAACTTCCCGGACGAACCTCTTGTACTTAATTATTTGTTCA
130 GATATCTCATTT-CCGAAACGACTTGACTTTCCGGATGAACCTCTTGTACTTAACTATTTGTTCA
*
76472014 ATTAGCAAATAAA-TATCAAATCAAAGTTTACTAGAAACTATATCTAACTCGTATAAAATAAATA
194 ATTAGCAAA-AAATTATCAAATAAAAGTTTACTAGAAACTATATCTAACTCGTATAAAATAAATA
* * * *
76472078 ATAACTATAGAATCATTGTTAGAATTGTGGTCCTAAAACCACTGTTTTCAACTCCACT-AAAATG
258 ATAATTACAGAATCATTGTTAGAATTGTGGTCCTGAAACCACTGTTTTCAACTCCATTGAAAATG
* *
76472142 ACCTGTTAGATCACTCTCAATTCTTTATCAACAAAAAAAAATCTCTTTCAATTCTCTCTCAATAT
1 ACCTGTTACATCACTCTCAATTCTTTAT----AAAAAAAAATCACTTTCAATTCTCTCTCAATAT
76472207 A
62 A
76472208 TCCGTAATGT
Statistics
Matches: 1190, Mismatches: 135, Indels: 71
0.85 0.10 0.05
Matches are distributed among these distances:
314 1 0.00
315 1 0.00
316 50 0.04
317 84 0.07
318 10 0.01
319 131 0.11
320 1 0.00
322 3 0.00
323 128 0.11
324 33 0.03
325 349 0.29
326 112 0.09
327 100 0.08
328 58 0.05
329 125 0.11
330 4 0.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.35
Consensus pattern (322 bp):
ACCTGTTACATCACTCTCAATTCTTTATAAAAAAAAATCACTTTCAATTCTCTCTCAATATACCT
GTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTGCTCAGTTTACAGAAATGAGGTCCCG
ATATCTCATTTCCGAAACGACTTGACTTTCCGGATGAACCTCTTGTACTTAACTATTTGTTCAAT
TAGCAAAAAATTATCAAATAAAAGTTTACTAGAAACTATATCTAACTCGTATAAAATAAATAATA
ATTACAGAATCATTGTTAGAATTGTGGTCCTGAAACCACTGTTTTCAACTCCATTGAAAATG
Found at i:76471950 original size:652 final size:648
Alignment explanation
Indices: 76470523--76472207 Score: 2434
Period size: 652 Copynumber: 2.6 Consensus size: 648
76470513 CTCTCAATAT
76470523 ACCTGTTACATCACTCTCAATTCTTTATGAAAAAAATATCACTTTCAATTCTCTCTCAACATACC
1 ACCTGTTACATCACTCTCAATTCTTTATGAAAAAAATATCACTTTCAATTCTCTCTCAACATACC
76470588 GGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTGCTCAGTTTACAGAAATGAGGTCCC
66 GGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTGCTCAGTTTACAGAAATGAGGTCCC
76470653 GATATCTCATTTCCCGAAATGACTTAACTTCCCGGACGAACCTCTTGTACTTAATTATTTGTTCA
131 GATATCTCATTTCCCGAAATGACTTAACTTCCCGGACGAACCTCTTGTACTTAATTATTTGTTCA
*
76470718 ATTAGCAAATAAATATCAAATCAAAA-TTTACTAGAAACTATATCTAACTCGTATAAAATAAATA
196 ATTAGCAAATAAATATCAAAT-AAAAGTTTACTAGAAACTATATCTAACTCGTAT-AAAT-TA-A
* * * * *
76470782 ATAATAATTACAGAATCATTG-CTAGAATTGTGATCCTGAAAGCACTGTTTTCAGCTGCGCA-GA
257 ATAATAATTATAGAATCATTGTC-AGAATTGTGGTCCTGAAACCACTGTTTTCAACT-C-CATAA
* * * *
76470845 AA--AC-----ATCACTCTCAATTATTTAT---ATAAAAAAAACCACTTTCAATTCTCTCTCAAT
319 AATGACTGTAGATCACTCTCAATTCTTTATCAAAAAAAAAAAATCTCTTTCAATTCTCTCTCAAT
* *
76470900 ATACTTGTATAGTAAATTCGTAAATATTTAATAAAAATATTTTTTTTGCTTAGTTTACAGAAACA
384 ATACTTGTATAGTAAATCCGTAAATATTTAATAAAAATA-TTTTTTTGCTCAGTTTACAGAAACA
* * * * *
76470965 AGGTTCCGATATCTCATTTCTCGAAACCACTTGACTTTCGGGATGAACCTCTTGTACTTAACTAT
448 AGGTCCCAATATCTCATTTCACAAAACCACATGACTTTCGGGATGAACCTCTTGTACTTAACTAT
* * * *
76471030 TTGTTCAATTAGCAAAAAATTATCAAATAAAAGATTACTAGAAACTATATTTAACTCGTATAAAA
513 TTGTTCAATTAGCAAAAAATTATCAAATAAAAGATTACTAAAAACCATATCTAACTCATATAAAA
* * * *
76471095 TAAATAATAATTACGGAATCATTATTAGAATTGTGGTTCTGAAACCATTATTTTCAACTCTATTG
578 TAAATAATAATTACGGAATCATTATTAGAATTGTGGTCCTAAAACCACTATTTTCAACTCCATTG
76471160 AAAACG
643 AAAACG
76471166 ACCTGTTACATCACTCTCAATTCTTTATGAAAAAAATATCACTTTCAATTCTCTCTCAACATACC
1 ACCTGTTACATCACTCTCAATTCTTTATGAAAAAAATATCACTTTCAATTCTCTCTCAACATACC
* *
76471231 GGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTTGCTTAGTTTACAGAAATGATGTCC
66 GGTATAGTAAATCCGTAAATATTTAATAAAAATA-TTTTTTGCTCAGTTTACAGAAATGAGGTCC
* * ** * * ** * * **
76471296 CGAAATCTCATTTGCCGAAACCACTTGACTTTCAAGATGAACCTCATGTACTTAACAATTTGTTC
130 CGATATCTCATTTCCCGAAATGACTTAACTTCCCGGACGAACCTCTTGTACTTAATTATTTGTTC
* * *
76471361 AATTAGCAAA-AAGTTATAAAATAAAAGTTTACTAGAAACTATATATAACTCGTATAAATTAAAT
195 AATTAGCAAATAA-ATATCAAATAAAAGTTTACTAGAAACTATATCTAACTCGTATAAATTAAAT
*
76471425 AATAATTATAGAATTATTGTCAGAATTGTGGTCCTGAAACCACTGTTTTCAACTCCATTAAAATG
259 AATAATTATAGAATCATTGTCAGAATTGTGGTCCTGAAACCACTGTTTTCAACTCCA-TAAAATG
76471490 ACATGGTAGATCACTCTCAATTCTTTATCAAAAAAAAAAGAATCTCTTTCAATTCTCTCTCAATA
323 AC-T-GTAGATCACTCTCAATTCTTTATCAAAAAAAAAA-AATCTCTTTCAATTCTCTCTCAATA
*
76471555 TACTTGTATAGTAAATCCGTAAATATTTAATAAAAATA-TTTTTTGCTCAGTTTACAGAAACGAG
385 TACTTGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTTGCTCAGTTTACAGAAACAAG
* * * *
76471619 GTCCCAATATCTCATTTCACAAAACGACATGAGTTTTGGGATGACCCTCTTGTACTTAACTATTT
450 GTCCCAATATCTCATTTCACAAAACCACATGACTTTCGGGATGAACCTCTTGTACTTAACTATTT
* * *
76471684 GTTCAATTAGCAAAAAAAATTATGAAATCAAAA-TTTACTAAAAACCATATCTAGCTCATATAAA
515 GTTCAATTAGC--AAAAAATTATCAAAT-AAAAGATTACTAAAAACCATATCTAACTCATATAAA
* * * *
76471748 ATAACTAATAATTACGGAATCATTGTTAGAATTGTGGTCCTAAAACTACTGTTTTCAACTCCATT
577 ATAAATAATAATTACGGAATCATTATTAGAATTGTGGTCCTAAAACCACTATTTTCAACTCCATT
* *
76471813 G-ACATG
642 GAAAACG
* * * * *
76471819 ACCTGTTAGATCACTCTCAATTTTTTAT-AAAAAAATAATCTCTTTCAATTCTATCTCAATATAC
1 ACCTGTTACATCACTCTCAATTCTTTATGAAAAAAAT-ATCACTTTCAATTCTCTCTCAACATAC
*
76471883 CTGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTGCTCAGTTTACAGAAATGAGGTCC
65 CGGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTGCTCAGTTTACAGAAATGAGGTCC
76471948 CGATATCTCATTTCCCGAAATGACTTAACTTCCCGGACGAACCTCTTGTACTTAATTATTTGTTC
130 CGATATCTCATTTCCCGAAATGACTTAACTTCCCGGACGAACCTCTTGTACTTAATTATTTGTTC
* *
76472013 AATTAGCAAATAAATATCAAATCAAAGTTTACTAGAAACTATATCTAACTCGTATAAAATAAATA
195 AATTAGCAAATAAATATCAAATAAAAGTTTACTAGAAACTATATCTAACTCGTATAAATTAAATA
* * *
76472078 ATAACTATAGAATCATTGTTAGAATTGTGGTCCTAAAACCACTGTTTTCAACTCCACTAAAATGA
260 ATAATTATAGAATCATTGTCAGAATTGTGGTCCTGAAACCACTGTTTTCAACTCCA-TAAAATGA
*
76472143 CCTGTTAGATCACTCTCAATTCTTTATCAACAAAAAAAAATCTCTTTCAATTCTCTCTCAATATA
324 -CTG-TAGATCACTCTCAATTCTTTATCAAAAAAAAAAAATCTCTTTCAATTCTCTCTCAATATA
76472208 TCCGTAATGT
Statistics
Matches: 928, Mismatches: 88, Indels: 44
0.88 0.08 0.04
Matches are distributed among these distances:
639 2 0.00
640 1 0.00
641 53 0.06
642 2 0.00
643 111 0.12
644 125 0.13
650 18 0.02
651 28 0.03
652 330 0.36
653 97 0.10
654 157 0.17
655 4 0.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.35
Consensus pattern (648 bp):
ACCTGTTACATCACTCTCAATTCTTTATGAAAAAAATATCACTTTCAATTCTCTCTCAACATACC
GGTATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTGCTCAGTTTACAGAAATGAGGTCCC
GATATCTCATTTCCCGAAATGACTTAACTTCCCGGACGAACCTCTTGTACTTAATTATTTGTTCA
ATTAGCAAATAAATATCAAATAAAAGTTTACTAGAAACTATATCTAACTCGTATAAATTAAATAA
TAATTATAGAATCATTGTCAGAATTGTGGTCCTGAAACCACTGTTTTCAACTCCATAAAATGACT
GTAGATCACTCTCAATTCTTTATCAAAAAAAAAAAATCTCTTTCAATTCTCTCTCAATATACTTG
TATAGTAAATCCGTAAATATTTAATAAAAATATTTTTTTGCTCAGTTTACAGAAACAAGGTCCCA
ATATCTCATTTCACAAAACCACATGACTTTCGGGATGAACCTCTTGTACTTAACTATTTGTTCAA
TTAGCAAAAAATTATCAAATAAAAGATTACTAAAAACCATATCTAACTCATATAAAATAAATAAT
AATTACGGAATCATTATTAGAATTGTGGTCCTAAAACCACTATTTTCAACTCCATTGAAAACG
Found at i:76473162 original size:20 final size:21
Alignment explanation
Indices: 76473118--76473168 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
76473108 TTGAAGTGTT
* **
76473118 AAAAAAAAGTTCAAAATTTGC
1 AAAAAAAAGTACAAAATTTAA
76473139 AAAAAAAAGTACAAAA-TTAA
1 AAAAAAAAGTACAAAATTTAA
76473159 AAAAAAAAGT
1 AAAAAAAAGT
76473169 GAATTAGTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 12 0.44
21 15 0.56
ACGTcount: A:0.69, C:0.06, G:0.08, T:0.18
Consensus pattern (21 bp):
AAAAAAAAGTACAAAATTTAA
Found at i:76474216 original size:17 final size:17
Alignment explanation
Indices: 76474196--76474228 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
76474186 AAAAGAGTGT
76474196 GAAAGAAAAAAAGAAAA
1 GAAAGAAAAAAAGAAAA
*
76474213 GAAAGAAAAAGAGAAA
1 GAAAGAAAAAAAGAAA
76474229 GACTGTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (17 bp):
GAAAGAAAAAAAGAAAA
Found at i:76474260 original size:19 final size:19
Alignment explanation
Indices: 76474237--76474281 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 19
76474227 AAGACTGTGA
76474237 AAAAAGAAAAA-GAGAATGTG
1 AAAAAGAAAAATGA-AAT-TG
76474257 AAAAAGAAAAATGAAATTG
1 AAAAAGAAAAATGAAATTG
76474276 AAAAAG
1 AAAAAG
76474282 TATAAGAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.33
20 14 0.58
21 2 0.08
ACGTcount: A:0.69, C:0.00, G:0.20, T:0.11
Consensus pattern (19 bp):
AAAAAGAAAAATGAAATTG
Found at i:76478129 original size:30 final size:30
Alignment explanation
Indices: 76478034--76478130 Score: 83
Period size: 30 Copynumber: 3.2 Consensus size: 30
76478024 AGCTCACTCC
*
76478034 TAGCTC-ACTTTCAACTCACGAGCTAAA-CTT
1 TAGCTCAACTTT-AGCTCACGAGCTAAAGC-T
* * * **
76478064 TAGCTCAACTTCAGCTTAGGAG-TTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAG-CT
*
76478094 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAAGCT
76478124 TAGCTCA
1 TAGCTCA
76478131 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 13, Indels: 8
0.70 0.18 0.11
Matches are distributed among these distances:
29 2 0.04
30 40 0.80
31 8 0.16
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAAGCT
Found at i:76479859 original size:10 final size:10
Alignment explanation
Indices: 76479844--76479874 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
76479834 GTTATACAAG
76479844 TCAAAAAAAA
1 TCAAAAAAAA
76479854 TCAAAAAAAAA
1 TC-AAAAAAAA
76479865 TCAAAAAAAA
1 TCAAAAAAAA
76479875 ATCTGGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.81, C:0.10, G:0.00, T:0.10
Consensus pattern (10 bp):
TCAAAAAAAA
Found at i:76479863 original size:12 final size:11
Alignment explanation
Indices: 76479846--76479877 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
76479836 TATACAAGTC
76479846 AAAAAAAATCA
1 AAAAAAAATCA
76479857 AAAAAAAATCA
1 AAAAAAAATCA
76479868 AAAAAAAATC
1 AAAAAAAATC
76479878 TGGAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.81, C:0.09, G:0.00, T:0.09
Consensus pattern (11 bp):
AAAAAAAATCA
Found at i:76480823 original size:6 final size:5
Alignment explanation
Indices: 76480799--76480861 Score: 58
Period size: 5 Copynumber: 12.0 Consensus size: 5
76480789 AAGAGAAAAC
*
76480799 AAAGA AAAGA AAAGAA AAAGCA AAAGCA AAAGA AGA-A AAAGA AAACGA
1 AAAGA AAAGA AAAG-A AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA
76480847 AATA-A AAAGA AAAGA
1 AA-AGA AAAGA AAAGA
76480862 GAGGCAAAAG
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
4 4 0.08
5 25 0.50
6 20 0.40
7 1 0.02
ACGTcount: A:0.76, C:0.05, G:0.17, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:76480829 original size:12 final size:10
Alignment explanation
Indices: 76480799--76480861 Score: 58
Period size: 11 Copynumber: 6.0 Consensus size: 10
76480789 AAGAGAAAAC
76480799 AAAGAAAAGA
1 AAAGAAAAGA
76480809 AAAGAAAAAGCA
1 AAAG-AAAAG-A
76480821 AAAGCAAAAGA
1 AAAG-AAAAGA
*
76480832 AGA-AAAAGA
1 AAAGAAAAGA
76480841 AAACGAAATA-A
1 AAA-GAAA-AGA
76480852 AAAGAAAAGA
1 AAAGAAAAGA
76480862 GAGGCAAAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
9 9 0.20
10 9 0.20
11 15 0.34
12 11 0.25
ACGTcount: A:0.76, C:0.05, G:0.17, T:0.02
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:76480938 original size:12 final size:12
Alignment explanation
Indices: 76480930--76480954 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
76480920 TTTGAAAAGC
76480930 AAAAAGAAAATG
1 AAAAAGAAAATG
76480942 AAAAAGAAAATG
1 AAAAAGAAAATG
76480954 A
1 A
76480955 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:76480951 original size:18 final size:18
Alignment explanation
Indices: 76480924--76480966 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
76480914 AAAGCCTTTG
76480924 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
76480943 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
76480961 AAAAGA
1 AAAAGA
76480967 GAGTGAAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.70, C:0.02, G:0.19, T:0.09
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:76480964 original size:30 final size:31
Alignment explanation
Indices: 76480930--76481011 Score: 87
Period size: 30 Copynumber: 2.7 Consensus size: 31
76480920 TTTGAAAAGC
**
76480930 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGAG
* * *
76480960 AAAAAGAGAGTG-AAAAGAAATTTGAGAGAG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGAG
**
76480990 AAAAAGAAGTTGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
76481012 TGAAAAGGAG
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 8 0.19
30 25 0.60
31 9 0.21
ACGTcount: A:0.63, C:0.00, G:0.23, T:0.13
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGAG
Found at i:76483175 original size:30 final size:30
Alignment explanation
Indices: 76483141--76483237 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
76483131 AGCTCACTCC
76483141 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
76483171 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
76483201 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
76483231 TAGCTCA
1 TAGCTCA
76483238 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:76499819 original size:27 final size:27
Alignment explanation
Indices: 76499788--76499965 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
76499778 TAAATTGTAC
*
76499788 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
76499815 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76499841 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
76499869 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
76499897 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
76499924 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
76499951 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
76499966 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:76499906 original size:82 final size:81
Alignment explanation
Indices: 76499789--76499944 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
76499779 AAATTGTACA
* * *
76499789 GCACTAAGTGTGCGATTTGGCTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
76499853 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
76499870 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
76499935 TGCGAGTTGA
65 TGCGAATTGA
76499945 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:76499956 original size:82 final size:81
Alignment explanation
Indices: 76499785--76499965 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
76499775 GATTAAATTG
* * *
76499785 TACAGCACTAAGTGTGCGATTTGGCTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
76499850 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
76499866 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
76499930 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
76499948 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
76499966 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:76510055 original size:5 final size:5
Alignment explanation
Indices: 76510047--76510071 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
76510037 AAAATAAAAA
76510047 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
76510072 GGTTGGTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:76517839 original size:48 final size:48
Alignment explanation
Indices: 76517781--76518569 Score: 1162
Period size: 48 Copynumber: 16.8 Consensus size: 48
76517771 ATATACACAC
* *
76517781 ATCTCCTACATGTTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
76517829 ATCTCGTACATATTTCACACTATCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
76517877 ATCTCGTACATATTTCACACTATCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
76517925 ATCTCGTACATATTTCACACTATCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
76517973 ATCTCGTACATATTTCACACTATCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
76518021 ATCTCGTACATATTTCACACTATCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
76518069 ATCTCATATATATTTCACACTAGCTATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
76518117 ATCT--TATATATTTCACACTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
76518163 ATCTCATTCATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
76518211 A--TC-T-C-----GCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
76518250 ATCTCATATATATTTCACACTAGCTATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
76518298 ATCT--TATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
76518344 ATCTCATATATATTTCACACTAGCTATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
76518392 ATCT--TATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
76518438 ATCTCATATATATTTCACACTAGCTATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
76518486 ATCT--TATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
76518532 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
76518570 TGTGACAACC
Statistics
Matches: 691, Mismatches: 33, Indels: 34
0.91 0.04 0.04
Matches are distributed among these distances:
39 33 0.05
41 2 0.00
42 1 0.00
44 1 0.00
45 1 0.00
46 177 0.26
48 476 0.69
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:76517895 original size:96 final size:94
Alignment explanation
Indices: 76517781--76518569 Score: 1205
Period size: 94 Copynumber: 8.4 Consensus size: 94
76517771 ATATACACAC
* * *
76517781 ATCTCCTACATGTTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT--TATATATTTCA
*
76517846 CACTATCCATTCGGCTTTACCACATATACAT
64 CACTAGCCATTCGGCTTTACCACATATACAT
* * *
76517877 ATCTCGTACATATTTCACACTATCCATTCGGCTTTACCACATATACATATCTCGTACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT--TATATATTTCA
*
76517942 CACTATCCATTCGGCTTTACCACATATACAT
64 CACTAGCCATTCGGCTTTACCACATATACAT
* * *
76517973 ATCTCGTACATATTTCACACTATCCATTCGGCTTTACCACATATACATATCTCGTACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT--TATATATTTCA
*
76518038 CACTATCCATTCGGCTTTACCACATATACAT
64 CACTAGCCATTCGGCTTTACCACATATACAT
* * *
76518069 ATCTCATATATATTTCACACTAGCTATTTGGCTTTACCACATATACATATCTTATATATTTCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATATATTTCACA
*
76518134 CTAGCCATTCGGCTTTACCACACATACAT
66 CTAGCCATTCGGCTTTACCACATATACAT
* * **
76518163 ATCTCATTCATATTTCACACTAGCCATTCAGCTTTACCACATATACATATC-------TCGCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATATATTTCACA
76518221 CTAGCCATTCGGCTTTACCACATATACAT
66 CTAGCCATTCGGCTTTACCACATATACAT
* * *
76518250 ATCTCATATATATTTCACACTAGCTATTTGGCTTTACCACATATACATATCTTATATATTTCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATATATTTCACA
76518315 CTAGCCATTCGGCTTTACCACATATACAT
66 CTAGCCATTCGGCTTTACCACATATACAT
* * *
76518344 ATCTCATATATATTTCACACTAGCTATTTGGCTTTACCACATATACATATCTTATATATTTCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATATATTTCACA
76518409 CTAGCCATTCGGCTTTACCACATATACAT
66 CTAGCCATTCGGCTTTACCACATATACAT
* * *
76518438 ATCTCATATATATTTCACACTAGCTATTTGGCTTTACCACATATACATATCTTATATATTTCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATATATTTCACA
76518503 CTAGCCATTCGGCTTTACCACATATACAT
66 CTAGCCATTCGGCTTTACCACATATACAT
*
76518532 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
76518570 TGTGACAACC
Statistics
Matches: 656, Mismatches: 30, Indels: 16
0.93 0.04 0.02
Matches are distributed among these distances:
87 79 0.12
94 341 0.52
96 236 0.36
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (94 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATATATTTCACA
CTAGCCATTCGGCTTTACCACATATACAT
Found at i:76518222 original size:39 final size:39
Alignment explanation
Indices: 76518178--76518254 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
76518168 ATTCATATTT
76518178 CACACTAGCCATTCAGCTTTACCACATATACATATCTCG
1 CACACTAGCCATTCAGCTTTACCACATATACATATCTCG
*
76518217 CACACTAGCCATTCGGCTTTACCACATATACATATCTC
1 CACACTAGCCATTCAGCTTTACCACATATACATATCTC
76518255 ATATATATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.30, C:0.34, G:0.08, T:0.29
Consensus pattern (39 bp):
CACACTAGCCATTCAGCTTTACCACATATACATATCTCG
Found at i:76520875 original size:50 final size:50
Alignment explanation
Indices: 76520658--76521136 Score: 862
Period size: 50 Copynumber: 9.7 Consensus size: 50
76520648 GAAATTGATG
*
76520658 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
* *
76520706 TATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
* * *
76520754 TATGAGATAAGTATATGTGGTAAAGCTGAATGGCTAATGTG-AA-ATATG
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
76520802 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
76520852 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
76520902 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
76520952 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
76521002 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
76521052 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
76521102 TATGAGATATGTATATGTGGTAAAGCCGAATGGCT
1 TATGAGATATGTATATGTGGTAAAGCCGAATGGCT
76521137 TTATGTCCGG
Statistics
Matches: 424, Mismatches: 5, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
48 133 0.31
49 2 0.00
50 289 0.68
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (50 bp):
TATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATA
Found at i:76521190 original size:37 final size:37
Alignment explanation
Indices: 76521140--76521213 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
76521130 AATGGCTTTA
* *
76521140 TGTCCGGGTAAGACCCGATGACTACGTTTGGAGATTT
1 TGTCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
**
76521177 TGTCCGGGTAAGACCCGATAACTTTGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
76521214 CATCTGAGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.31
Consensus pattern (37 bp):
TGTCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
Found at i:76522531 original size:40 final size:40
Alignment explanation
Indices: 76522476--76522916 Score: 639
Period size: 40 Copynumber: 11.0 Consensus size: 40
76522466 GAGTTATATA
76522476 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * *
76522516 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
76522556 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * *
76522596 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
76522636 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
76522676 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
76522716 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * * *
76522756 TATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * * * * *
76522796 TATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * * * * *
76522836 CATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
* * * * *
76522876 TAACCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
76522916 T
1 T
76522917 GTATTCGGGC
Statistics
Matches: 364, Mismatches: 37, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 364 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATG
Found at i:76522565 original size:80 final size:80
Alignment explanation
Indices: 76522474--76522916 Score: 706
Period size: 80 Copynumber: 5.5 Consensus size: 80
76522464 GAGAGTTATA
76522474 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
76522539 CATTTGTGCTAGTGT
66 CATTTGTGCTAGTGT
76522554 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
76522619 CATTTGTGCTAGTGT
66 CATTTGTGCTAGTGT
76522634 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
* *
76522699 CATTCGTGCTAGTGA
66 CATTTGTGCTAGTGT
*
76522714 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
*
76522779 CATTTGTGCTGGTGT
66 CATTTGTGCTAGTGT
* * * * * ** * *
76522794 TATATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAGTTACATCAGGGTTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
* *
76522859 CATTCGTGCTGGTGT
66 CATTTGTGCTAGTGT
* * * * *
76522874 TATAACCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGATGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
76522917 GTATTCGGGC
Statistics
Matches: 334, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
80 334 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAG
CATTTGTGCTAGTGT
Found at i:76523126 original size:25 final size:25
Alignment explanation
Indices: 76523076--76523126 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
76523066 TGTGTAACAA
* *
76523076 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
76523101 CAAATGAGTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
76523126 C
1 C
76523127 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.20
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:76523195 original size:29 final size:28
Alignment explanation
Indices: 76523123--76523213 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
76523113 GGCACTGAGA
* *
76523123 GTGCGAGTTCTTCAACTGAGCACTATGT
1 GTGCGAGTTCTTTAATTGAGCACTATGT
**
76523151 GTGCGAGATT-GGTAATTGAGGCACTATGT
1 GTGCGAG-TTCTTTAATTGA-GCACTATGT
* *
76523180 GTGCGAGTTCTTTAATCGAGCGCTATGT
1 GTGCGAGTTCTTTAATTGAGCACTATGT
76523208 GTGCGA
1 GTGCGA
76523214 AATCAGTCAG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
28 28 0.54
29 24 0.46
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.32
Consensus pattern (28 bp):
GTGCGAGTTCTTTAATTGAGCACTATGT
Found at i:76526026 original size:48 final size:48
Alignment explanation
Indices: 76525960--76526204 Score: 445
Period size: 48 Copynumber: 5.1 Consensus size: 48
76525950 GCGGAAATTG
*
76525960 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
76526008 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
76526056 ATGTATGAGATAAGTTTATGTGGTAAATCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
76526104 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
76526152 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
76526200 ATGTA
1 ATGTA
76526205 GGCGATGTGT
Statistics
Matches: 191, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 191 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:76526496 original size:37 final size:37
Alignment explanation
Indices: 76526351--76526495 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
76526341 GGAAATATAT
*
76526351 TCCGGGTAAGACCCGATGACTACGTTTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
76526388 TCTGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
76526425 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* **
76526462 TCCGGGTAAGACCCGATAACTTTGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
76526496 TCATCTGAGC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:76527373 original size:48 final size:48
Alignment explanation
Indices: 76527297--76527917 Score: 1118
Period size: 48 Copynumber: 13.0 Consensus size: 48
76527287 GGGTGTTACA
* *
76527297 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
1 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
76527345 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
1 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
76527393 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
1 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
76527441 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
1 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
76527489 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
1 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
76527537 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
1 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
* *
76527585 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
1 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
*
76527633 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGAT
1 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
* *
76527681 TTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
1 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
76527729 TTA-CACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
1 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
* * *
76527776 TTAGCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCT
1 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
* *
76527824 TTACCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCT
1 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
*
76527872 TTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
1 TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGG
76527918 TATTTCACAC
Statistics
Matches: 556, Mismatches: 16, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
47 45 0.08
48 511 0.92
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCT
Found at i:76527923 original size:21 final size:21
Alignment explanation
Indices: 76527897--76527938 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
76527887 ATCTCATACA
76527897 TATTTCACACTAGCCATTCGG
1 TATTTCACACTAGCCATTCGG
76527918 TATTTCACACTAGCCATTCGG
1 TATTTCACACTAGCCATTCGG
76527939 CTTTACCACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (21 bp):
TATTTCACACTAGCCATTCGG
Found at i:76527936 original size:69 final size:69
Alignment explanation
Indices: 76527849--76527986 Score: 267
Period size: 69 Copynumber: 2.0 Consensus size: 69
76527839 ATCTCGTACA
76527849 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
76527914 TCGG
66 TCGG
*
76527918 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
76527983 TCGG
66 TCGG
76527987 CTTTACCACA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (69 bp):
TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
TCGG
Found at i:76527947 original size:117 final size:117
Alignment explanation
Indices: 76527801--76528034 Score: 432
Period size: 117 Copynumber: 2.0 Consensus size: 117
76527791 ATCTCGTACA
*
76527801 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
76527866 TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
66 TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
*
76527918 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
**
76527983 TCGGCTTTACCACATATACATATCTCATACATATTTCACGTTAGCCATTCGG
66 TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
76528035 CTTTACCACA
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 113 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (117 bp):
TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGG
Found at i:76528030 original size:165 final size:165
Alignment explanation
Indices: 76527753--76528082 Score: 588
Period size: 165 Copynumber: 2.0 Consensus size: 165
76527743 ATCTCATATA
* *
76527753 TATTTCACACTAGCCATTCGGCTTTAGCACATATACATATCTCGTACATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
*
76527818 TCGGCTTTACCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
66 TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
76527883 ACATATCTCATACATATTTCACACTAGCCATTCGG
131 ACATATCCCATACATATTTCACACTAGCCATTCGG
*
76527918 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
**
76527983 TCGGCTTTACCACATATACATATCTCATACATATTTCACGTTAGCCATTCGGCTTTACCACATAT
66 TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
76528048 ACATATCCCATACATATTTCACATTAGCCATTCGG
131 ACATATCCCATACATATTTCACACTAGCCATTCGG
76528083 CTTTACCACA
Statistics
Matches: 157, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
165 157 1.00
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.34
Consensus pattern (165 bp):
TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
ACATATCCCATACATATTTCACACTAGCCATTCGG
Found at i:76528078 original size:213 final size:212
Alignment explanation
Indices: 76527706--76528130 Score: 751
Period size: 213 Copynumber: 2.0 Consensus size: 212
76527696 ATCTCATACA
*
76527706 TATTTCACATTAGCCATTCGGCTTTACACATATACATATCTCATATATATTTCACACTAGCCATT
1 TATTTCACACTAGCCATTCGGCTTTACACATATACATATCTCATATATATTTCACACTAGCCATT
* *
76527771 CGGCTTTAGCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATA
66 CGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
* *
76527836 CATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
131 CATATCCCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
76527901 TCACACTAGCCATTCGG
196 TCACACTAGCCATTCGG
76527918 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCAT
1 TATTTCACACTAGCCATTCGGCTTTA-CACATATACATATCTCATATATATTTCACACTAGCCAT
**
76527983 TCGGCTTTACCACATATACATATCTCATACATATTTCACGTTAGCCATTCGGCTTTACCACATAT
65 TCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
* *
76528048 ACATATCCCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
130 ACATATCCCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
*
76528113 TTCACATTAGCCATTCGG
195 TTCACACTAGCCATTCGG
76528131 CTTTACTACA
Statistics
Matches: 202, Mismatches: 10, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
212 25 0.12
213 177 0.88
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (212 bp):
TATTTCACACTAGCCATTCGGCTTTACACATATACATATCTCATATATATTTCACACTAGCCATT
CGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
CATATCCCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATT
TCACACTAGCCATTCGG
Found at i:76528149 original size:48 final size:48
Alignment explanation
Indices: 76527918--76528136 Score: 384
Period size: 48 Copynumber: 4.6 Consensus size: 48
76527908 AGCCATTCGG
* *
76527918 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
*
76527966 TATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
* *
76528014 TATTTCACGTTAGCCATTCGGCTTTACCACATATACATATCCCATACA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
*
76528062 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
76528110 TATTTCACATTAGCCATTCGGCTTTAC
1 TATTTCACATTAGCCATTCGGCTTTAC
76528137 TACACACACA
Statistics
Matches: 164, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 164 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACA
Found at i:76569429 original size:27 final size:27
Alignment explanation
Indices: 76569399--76569450 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
76569389 ACAAGTGAGG
76569399 AAAAAGAAAAAGAGAATGAAAAAGAGC
1 AAAAAGAAAAAGAGAATGAAAAAGAGC
* ** *
76569426 AAAAAGAGATTGAGAGTGAAAAAGA
1 AAAAAGAAAAAGAGAATGAAAAAGA
76569451 AATTGAAGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.65, C:0.02, G:0.25, T:0.08
Consensus pattern (27 bp):
AAAAAGAAAAAGAGAATGAAAAAGAGC
Found at i:76573704 original size:564 final size:564
Alignment explanation
Indices: 76572636--76573766 Score: 2217
Period size: 564 Copynumber: 2.0 Consensus size: 564
76572626 TTTCTCTTTA
*
76572636 GCAAGCTTAAGATCCAAGTTGAATTGTTGGAGAGCCCAGTAATCTTTGTGTTCTAACTCTAAGGG
1 GCAAGCTTAAGATCCAAGTTGAATTGTTGGAGAGCCCAGTAATCTTTGTGTTATAACTCTAAGGG
76572701 TAGTTGGCAGGCTTTCCTAAAAACCAACCTATAGGCTGATATCCCTAAAGGTATCTTGTATGTTG
66 TAGTTGGCAGGCTTTCCTAAAAACCAACCTATAGGCTGATATCCCTAAAGGTATCTTGTATGTTG
76572766 TCTTGTAGGCCCATAAAACATTATCCAGTCTTTTGGACCAATCTCATCGATTCAGGCAAAGTACC
131 TCTTGTAGGCCCATAAAACATTATCCAGTCTTTTGGACCAATCTCATCGATTCAGGCAAAGTACC
76572831 TTCTTGAGTATGCCTTTTATCTCTTTGTTTTCCAGTTTAGCTTGCCGATTTGTTGTGGATGGTAA
196 TTCTTGAGTATGCCTTTTATCTCTTTGTTTTCCAGTTTAGCTTGCCGATTTGTTGTGGATGGTAA
76572896 GTTGTGGCAACTTTGTGCTTCACTCCATGTTTTTCGAGTAACCATTTCAACCAATTGTTCAAAAA
261 GTTGTGGCAACTTTGTGCTTCACTCCATGTTTTTCGAGTAACCATTTCAACCAATTGTTCAAAAA
76572961 ATGGGACCCCTCATCACTAATGATGGCCCTAGGAGTTCCAAACCTTGTGAACACATGTTTCTACA
326 ATGGGACCCCTCATCACTAATGATGGCCCTAGGAGTTCCAAACCTTGTGAACACATGTTTCTACA
76573026 AAAACTTCATCACAACCTTAGCATCGTTCATCGGTTATGCCTCGGCCTCAACCCACTTATATATA
391 AAAACTTCATCACAACCTTAGCATCGTTCATCGGTTATGCCTCGGCCTCAACCCACTTATATATA
*
76573091 TAGTCTACTGCTACCAATATGTACTTGTGACCAAAAGACAGAGGGAAAGGACCGAAAAAGTCAAT
456 TAGTCTACTGCTACCAATATGTACTTGTGACCAAAAGACAGAGGGAAAGGACCAAAAAAGTCAAT
*
76573156 ACCCCAAACATTAAATAATTCTACCTCAATAATGTTTGTTCAGG
521 ACCCCAAACATCAAATAATTCTACCTCAATAATGTTTGTTCAGG
76573200 GCAAGCTTAAGATCCAAGTTGAATTGTTGGAGAGCCCAGTAATCTTTGTGTTATAACTCTAAGGG
1 GCAAGCTTAAGATCCAAGTTGAATTGTTGGAGAGCCCAGTAATCTTTGTGTTATAACTCTAAGGG
76573265 TAGTTGGCAGGCTTTCCTAAAAACCAACCTATAGGCTGATATCCCTAAAGGTATCTTGTATGTTG
66 TAGTTGGCAGGCTTTCCTAAAAACCAACCTATAGGCTGATATCCCTAAAGGTATCTTGTATGTTG
76573330 TCTTGTAGGCCCATAAAACATTATCCAGTCTTTTGGACCAATCTCATCGATTCAGGCAAAGTACC
131 TCTTGTAGGCCCATAAAACATTATCCAGTCTTTTGGACCAATCTCATCGATTCAGGCAAAGTACC
76573395 TTCTTGAGTATGCCTTTTATCTCTTTGTTTTCCAGTTTAGCTTGCCGATTTGTTGTGGATGGTAA
196 TTCTTGAGTATGCCTTTTATCTCTTTGTTTTCCAGTTTAGCTTGCCGATTTGTTGTGGATGGTAA
76573460 GTTGTGGCAACTTTGTGCTTCACTCCATGTTTTTCGAGTAACCATTTCAACCAATTGTTCAAAAA
261 GTTGTGGCAACTTTGTGCTTCACTCCATGTTTTTCGAGTAACCATTTCAACCAATTGTTCAAAAA
76573525 ATGGGACCCCTCATCACTAATGATGGCCCTAGGAGTTCCAAACCTTGTGAACACATGTTTCTACA
326 ATGGGACCCCTCATCACTAATGATGGCCCTAGGAGTTCCAAACCTTGTGAACACATGTTTCTACA
76573590 AAAACTTCATCACAACCTTAGCATCGTTCATCGGTTATGCCTCGGCCTCAACCCACTTATATATA
391 AAAACTTCATCACAACCTTAGCATCGTTCATCGGTTATGCCTCGGCCTCAACCCACTTATATATA
* *
76573655 TAGTCTACTGCTACCACTATGTACTTGTGACCAAAAGACGGAGGGAAAGGACCAAAAAAGTCAAT
456 TAGTCTACTGCTACCAATATGTACTTGTGACCAAAAGACAGAGGGAAAGGACCAAAAAAGTCAAT
76573720 ACCCCAAACATCAAATAATTCTACCTCAATAATGTTTGTTCAGG
521 ACCCCAAACATCAAATAATTCTACCTCAATAATGTTTGTTCAGG
76573764 GCA
1 GCA
76573767 CCTCATTTCT
Statistics
Matches: 562, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
564 562 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (564 bp):
GCAAGCTTAAGATCCAAGTTGAATTGTTGGAGAGCCCAGTAATCTTTGTGTTATAACTCTAAGGG
TAGTTGGCAGGCTTTCCTAAAAACCAACCTATAGGCTGATATCCCTAAAGGTATCTTGTATGTTG
TCTTGTAGGCCCATAAAACATTATCCAGTCTTTTGGACCAATCTCATCGATTCAGGCAAAGTACC
TTCTTGAGTATGCCTTTTATCTCTTTGTTTTCCAGTTTAGCTTGCCGATTTGTTGTGGATGGTAA
GTTGTGGCAACTTTGTGCTTCACTCCATGTTTTTCGAGTAACCATTTCAACCAATTGTTCAAAAA
ATGGGACCCCTCATCACTAATGATGGCCCTAGGAGTTCCAAACCTTGTGAACACATGTTTCTACA
AAAACTTCATCACAACCTTAGCATCGTTCATCGGTTATGCCTCGGCCTCAACCCACTTATATATA
TAGTCTACTGCTACCAATATGTACTTGTGACCAAAAGACAGAGGGAAAGGACCAAAAAAGTCAAT
ACCCCAAACATCAAATAATTCTACCTCAATAATGTTTGTTCAGG
Found at i:76575088 original size:16 final size:16
Alignment explanation
Indices: 76575067--76575136 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
76575057 TTTGGTTCAC
* *
76575067 TGTAATGGAATGGGGT
1 TGTAATGGAATAGAGT
*
76575083 TGTAATTGAATAGAGT
1 TGTAATGGAATAGAGT
* *
76575099 TGTAATGGAGTCGAGT
1 TGTAATGGAATAGAGT
*
76575115 TGTAATGGAATAGAGC
1 TGTAATGGAATAGAGT
76575131 TGTAAT
1 TGTAAT
76575137 CAGTAATTCA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.31, C:0.03, G:0.33, T:0.33
Consensus pattern (16 bp):
TGTAATGGAATAGAGT
Found at i:76575117 original size:32 final size:32
Alignment explanation
Indices: 76575066--76575136 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
76575056 GTTTGGTTCA
* * *
76575066 CTGTAATGGAATGGGGTTGTAATTGAATAGAG
1 CTGTAATGGAATCGAGTTGTAATGGAATAGAG
* *
76575098 TTGTAATGGAGTCGAGTTGTAATGGAATAGAG
1 CTGTAATGGAATCGAGTTGTAATGGAATAGAG
76575130 CTGTAAT
1 CTGTAAT
76575137 CAGTAATTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.04, G:0.32, T:0.32
Consensus pattern (32 bp):
CTGTAATGGAATCGAGTTGTAATGGAATAGAG
Found at i:76575204 original size:44 final size:45
Alignment explanation
Indices: 76575122--76575210 Score: 130
Period size: 44 Copynumber: 2.0 Consensus size: 45
76575112 AGTTGTAATG
76575122 GAATAGAGCTGTAATCAGTAATTCAATTTTTTGGTTGAATGGAATT
1 GAATAGAGCTGTAATCAGTAATTC-ATTTTTTGGTTGAATGGAATT
76575168 GAATAGAGCTGTAAT-AG-AATTC-TTGTGTTTGGTTGAATGGAAT
1 GAATAGAGCTGTAATCAGTAATTCATT-T-TTTGGTTGAATGGAAT
76575211 AGATGTTGTA
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
42 2 0.05
43 1 0.02
44 21 0.51
45 2 0.05
46 15 0.37
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (45 bp):
GAATAGAGCTGTAATCAGTAATTCATTTTTTGGTTGAATGGAATT
Found at i:76575211 original size:39 final size:39
Alignment explanation
Indices: 76575113--76575226 Score: 106
Period size: 44 Copynumber: 2.7 Consensus size: 39
76575103 ATGGAGTCGA
76575113 GTTGTAATGGAATAGAGCTGTAATCAGTAATTCAATTTTTTG
1 GTTG-AATGGAATAGAGCTGTAAT-AGTAATTC-ATTTTTTG
76575155 GTTGAATGGAATTGAATAGAGCTGTAATAG-AATTC-TTGTGTTTG
1 GTTGAAT-G----GAATAGAGCTGTAATAGTAATTCATT-T-TTTG
*
76575199 GTTGAATGGAATAGATGTTGTAATAGTA
1 GTTGAATGGAATAGA-GCTGTAATAGTA
76575227 TAAGGAAAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 19
0.76 0.01 0.23
Matches are distributed among these distances:
39 7 0.11
40 9 0.15
41 4 0.06
42 7 0.11
43 2 0.03
44 16 0.26
45 2 0.03
46 15 0.24
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.39
Consensus pattern (39 bp):
GTTGAATGGAATAGAGCTGTAATAGTAATTCATTTTTTG
Found at i:76575316 original size:25 final size:26
Alignment explanation
Indices: 76575283--76575333 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
76575273 GTAGGTAGAT
*
76575283 GATTATTGTT-ATTAAATTTTAATAA
1 GATTATTGTTAAATAAATTTTAATAA
*
76575308 GATTATTGTTAAATATATTTTAATAA
1 GATTATTGTTAAATAAATTTTAATAA
76575334 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (26 bp):
GATTATTGTTAAATAAATTTTAATAA
Found at i:76576187 original size:21 final size:22
Alignment explanation
Indices: 76576161--76576201 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
76576151 CACTATACAC
*
76576161 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACGCCCATGTGGG
76576182 AGGGGCAACACGCCCATGTG
1 AGGGGCAACACGCCCATGTG
76576202 ACCAATTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGTGGG
Found at i:76576372 original size:28 final size:29
Alignment explanation
Indices: 76576321--76576375 Score: 87
Period size: 28 Copynumber: 1.9 Consensus size: 29
76576311 ACAGGGGTTT
76576321 TCACACGACCTGGCACACGCCCGTGTCCC
1 TCACACGACCTGGCACACGCCCGTGTCCC
76576350 TCACACGACCAT-G-ACACGCCCGTGTC
1 TCACACGACC-TGGCACACGCCCGTGTC
76576376 TTAGCCCGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 13 0.52
29 11 0.44
30 1 0.04
ACGTcount: A:0.20, C:0.45, G:0.20, T:0.15
Consensus pattern (29 bp):
TCACACGACCTGGCACACGCCCGTGTCCC
Found at i:76582246 original size:17 final size:17
Alignment explanation
Indices: 76582220--76582254 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
76582210 AGCATGAATG
*
76582220 CTCTTTGGGACTTAGCC
1 CTCTTCGGGACTTAGCC
76582237 CTCTTCGGGACTTAGCC
1 CTCTTCGGGACTTAGCC
76582254 C
1 C
76582255 GGATACATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.34, G:0.23, T:0.31
Consensus pattern (17 bp):
CTCTTCGGGACTTAGCC
Found at i:76582252 original size:57 final size:57
Alignment explanation
Indices: 76582182--76582294 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 57
76582172 GCACGAATGC
* * *
76582182 CTTCGGGGCTTAGCCCGGATACATCACCAGCATGAATGCTCTTTGGGACTTAGCCCT
1 CTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCT
76582239 CTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCC
1 CTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCC
76582295 GGATACATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.20, C:0.32, G:0.24, T:0.24
Consensus pattern (57 bp):
CTTCGGGACTTAGCCCGGATACATCACCAGCACGAATGCTCTTCGGGACTTAGCCCT
Found at i:76582292 original size:40 final size:40
Alignment explanation
Indices: 76582237--76582619 Score: 685
Period size: 40 Copynumber: 9.6 Consensus size: 40
76582227 GGACTTAGCC
76582237 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
76582277 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
76582317 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
76582357 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
* * *
76582397 CTCTTCGGAACTTAGTCAGGATACATCACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
* * *
76582437 CTCTTCGGGACCTAGTCCGGATATATCACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
*
76582477 CTCTTCAGGACTTAGCCCGGATACATCACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
76582517 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
* *
76582557 CTCTTCAGGACTTAGCCCGGGTACATCACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
76582597 CTCTTCGGGACTTAGCCCGGATA
1 CTCTTCGGGACTTAGCCCGGATA
76582620 TAACATACTG
Statistics
Matches: 327, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 327 1.00
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAATG
Found at i:76583797 original size:47 final size:47
Alignment explanation
Indices: 76583734--76584221 Score: 715
Period size: 47 Copynumber: 10.4 Consensus size: 47
76583724 CCCTTCGGGA
* * *
76583734 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* *
76583781 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* * * *
76583828 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* *
76583875 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* * * *
76583922 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* *
76583969 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* * * *
76584016 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* *
76584063 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* * * *
76584110 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
*
76584157 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
*
76584204 CTTATCACATATACACAC
1 CTTATCACATATATACAC
76584222 CTTGTACATC
Statistics
Matches: 390, Mismatches: 51, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 390 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
Found at i:76583895 original size:94 final size:94
Alignment explanation
Indices: 76583734--76584221 Score: 904
Period size: 94 Copynumber: 5.2 Consensus size: 94
76583724 CCCTTCGGGA
* * *
76583734 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
76583799 CTTCACATCCATCACATCGGCCATTAGGT
66 CTTCACATCCATCACATCGGCCATTAGGT
76583828 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
76583893 CTTCACATCCATCACATCGGCCATTAGGT
66 CTTCACATCCATCACATCGGCCATTAGGT
76583922 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
76583987 CTTCACATCCATCACATCGGCCATTAGGT
66 CTTCACATCCATCACATCGGCCATTAGGT
76584016 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
76584081 CTTCACATCCATCACATCGGCCATTAGGT
66 CTTCACATCCATCACATCGGCCATTAGGT
76584110 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * *
76584175 TTTCACATTCATCACATCGGCCATTAGGC
66 CTTCACATCCATCACATCGGCCATTAGGT
* *
76584204 CTTATCACATATACACAC
1 CTTATCTCATATATACAC
76584222 CTTGTACATC
Statistics
Matches: 386, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 386 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
CTTCACATCCATCACATCGGCCATTAGGT
Found at i:76587106 original size:47 final size:47
Alignment explanation
Indices: 76587037--76587265 Score: 186
Period size: 47 Copynumber: 4.9 Consensus size: 47
76587027 GGGGTAGAAT
*
76587037 GTCGATGCCATGTCCCAGACATGTTCTTACACTGGCTCATATCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
* * * *
76587084 GTCGATGCCATGTCCTAGACATGGTCTTACGCTGACT-ATCGTCATCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATC-TCAA
* * * * * * *
76587132 GGCCGACGCCATGTCACAGACATGGTCTTACACTGACACATCTCT-TA
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
* *
76587179 G-CCAGTG-CATGTCCCAGACAT-GTCTTACACTAGCT--TGAGTCTCAA
1 GTCGA-TGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-A-TCTCAA
* *
76587224 -TGCTGATGCCATTTCCTAGACATGGTCTTACACTGGCTCATA
1 GT-C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATA
76587266 ATAACCCATG
Statistics
Matches: 142, Mismatches: 25, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
42 1 0.01
44 14 0.10
45 16 0.11
46 7 0.05
47 49 0.35
48 18 0.13
49 34 0.24
50 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
Found at i:76592659 original size:42 final size:42
Alignment explanation
Indices: 76592546--76592908 Score: 189
Period size: 42 Copynumber: 8.3 Consensus size: 42
76592536 ATATGTCGTA
* * * * * *
76592546 CAATGCCATATCCCAGATATGGTCTTACATGTATTATCATAT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
*
76592588 CGAA-GCCAATAG-CCCAG-CTATGGTCTTACACGAAATCTCATAA
1 C-AATGCC-AT-GTCCCAGAC-ATGGTCTTACACGAAATCTCATAT
* * * * *
76592631 CGATGCTATGTCCCAGACATGGTCTTACACGTAATATCATAC
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
* * *
76592673 CAATGCCAATAG-CCTAG-CTATGGTCTTACACGGAATCTCGTAT
1 CAATGCC-AT-GTCCCAGAC-ATGGTCTTACACGAAATCTCATAT
* * * * * * *
76592716 CAATGCCATGTCACAGAAATGGCCTTGCATGAAATATTATAT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
* * * *
76592758 CAAAGTCATGTCCCAGACATGGTCTTACATGAAGTCTCATAACGGTGT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCAT-A-----T
* * * *
76592806 CGATGCCATGTCCCAGACATGGTCTTATACGAGACCTCATATCGAT
1 CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTC--AT--AT
* * * *
76592852 GCCAATGCCATATCCTAGATATGGTCTTACATGAAATCTCATA-
1 --CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
76592895 CAGATGCCGATGTC
1 CA-ATGCC-ATGTC
76592909 ATATCCTAGA
Statistics
Matches: 240, Mismatches: 56, Indels: 49
0.70 0.16 0.14
Matches are distributed among these distances:
41 4 0.02
42 97 0.40
43 70 0.29
44 2 0.01
46 3 0.01
48 61 0.25
50 2 0.01
51 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (42 bp):
CAATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
Found at i:76592699 original size:85 final size:85
Alignment explanation
Indices: 76592556--76592801 Score: 248
Period size: 85 Copynumber: 2.9 Consensus size: 85
76592546 CAATGCCATA
* * * *
76592556 TCCCAGATATGGTCTTACATGTATTATCATATCGAAGCCAATAGCCCAGCTATGGTCTTACACGA
1 TCCCAGACATGGTCTTACACGTAATATCATATCCAAGCCAATAGCCCAGCTATGGTCTTACACGA
76592621 AATCTCATAACGATGCTATG
66 AATCTCATAACGATGCTATG
*
76592641 TCCCAGACATGGTCTTACACGTAATATCATA-CCAATGCCAATAGCCTAGCTATGGTCTTACACG
1 TCCCAGACATGGTCTTACACGTAATATCATATCCAA-GCCAATAGCCCAGCTATGGTCTTACACG
* * * * *
76592705 GAATCTCGTATCAATGCCATG
65 AAATCTCATAACGATGCTATG
* * * * * * * * * *
76592726 TCACAGAAATGGCCTTGCATGAAATATTATATCAAAGTC-AT-GTCCCAGAC-ATGGTCTTACAT
1 TCCCAGACATGGTCTTACACGTAATATCATATCCAAGCCAATAG-CCCAG-CTATGGTCTTACAC
*
76592788 GAAGTCTCATAACG
64 GAAATCTCATAACG
76592802 GTGTCGATGC
Statistics
Matches: 131, Mismatches: 26, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
83 1 0.01
84 29 0.22
85 98 0.75
86 3 0.02
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (85 bp):
TCCCAGACATGGTCTTACACGTAATATCATATCCAAGCCAATAGCCCAGCTATGGTCTTACACGA
AATCTCATAACGATGCTATG
Found at i:76592720 original size:43 final size:43
Alignment explanation
Indices: 76592546--76592723 Score: 168
Period size: 43 Copynumber: 4.2 Consensus size: 43
76592536 ATATGTCGTA
* * * *
76592546 CAATGCC-ATATCCCAGATATGGTCTTACATGTATTATCATAT
1 CAATGCCAATAGCCCAGCTATGGTCTTACACGTAATATCATAT
* * *
76592588 CGAA-GCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATAA
1 C-AATGCCAATAGCCCAGCTATGGTCTTACACGTAATATCATAT
* * *
76592631 CGATG-CTAT-GTCCCAGAC-ATGGTCTTACACGTAATATCATAC
1 CAATGCCAATAG-CCCAG-CTATGGTCTTACACGTAATATCATAT
* * * *
76592673 CAATGCCAATAGCCTAGCTATGGTCTTACACGGAATCTCGTAT
1 CAATGCCAATAGCCCAGCTATGGTCTTACACGTAATATCATAT
76592716 CAATGCCA
1 CAATGCCA
76592724 TGTCACAGAA
Statistics
Matches: 109, Mismatches: 19, Indels: 15
0.76 0.13 0.10
Matches are distributed among these distances:
41 1 0.01
42 39 0.36
43 68 0.62
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
CAATGCCAATAGCCCAGCTATGGTCTTACACGTAATATCATAT
Found at i:76592939 original size:48 final size:48
Alignment explanation
Indices: 76592776--76592940 Score: 165
Period size: 48 Copynumber: 3.4 Consensus size: 48
76592766 TGTCCCAGAC
* * * * * * *
76592776 ATGGTCTTACATGA-AGTCTCATAACGGTGTCGATGCCATGTCCCAGAC
1 ATGGTCTTATATGAGA-TCTCATATCGATGCCGATGCCATATCCTAGAT
* * *
76592824 ATGGTCTTATACGAGACCTCATATCGATGCCAATGCCATATCCTAGAT
1 ATGGTCTTATATGAGATCTCATATCGATGCCGATGCCATATCCTAGAT
* * *
76592872 ATGGTCTTACATGAAATCTCATA-CAGATGCCGATGTCATATCCTAGAT
1 ATGGTCTTATATGAGATCTCATATC-GATGCCGATGCCATATCCTAGAT
76592920 ATGGTCTTATAT-AGGATCTCA
1 ATGGTCTTATATGA-GATCTCA
76592941 ATACTCACAT
Statistics
Matches: 96, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
47 2 0.02
48 93 0.97
49 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (48 bp):
ATGGTCTTATATGAGATCTCATATCGATGCCGATGCCATATCCTAGAT
Found at i:76597756 original size:28 final size:28
Alignment explanation
Indices: 76597716--76597785 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
76597706 ATAGTAAGTC
*
76597716 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
76597744 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
*
76597772 TGCACACTTAGTGC
1 CGCACACTTAGTGC
76597786 CAATCTCATA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:76598351 original size:101 final size:105
Alignment explanation
Indices: 76598175--76598472 Score: 505
Period size: 101 Copynumber: 2.8 Consensus size: 105
76598165 CTTCTTAAAC
* *
76598175 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAATATAATAAACAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
76598240 TTAATCCATGCATATTGGTCGGCTACTTTCATC-T-TT-T
66 TTAATCCATGCATATTGGTCGGCTACTTTCATCTTATTAT
76598277 ATAATATATTAACATATATT-AAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
*
76598341 GTAATCCATGCATATTGGTCGGCTACTTTCATCTTTTATTAAAT
66 TTAATCCATGCATATTGGTCGGCTACTTTCATC--TTATT--AT
76598385 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
1 ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
76598450 TTAATCCATGCATATTGGTCGGC
66 TTAATCCATGCATATTGGTCGGC
76598473 CGTTAATTCC
Statistics
Matches: 184, Mismatches: 4, Indels: 9
0.93 0.02 0.05
Matches are distributed among these distances:
101 74 0.40
102 20 0.11
104 1 0.01
105 2 0.01
108 21 0.11
109 66 0.36
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (105 bp):
ATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACATAATAAATAATTCAAGTCA
TTAATCCATGCATATTGGTCGGCTACTTTCATCTTATTAT
Found at i:76598433 original size:109 final size:107
Alignment explanation
Indices: 76598154--76598472 Score: 515
Period size: 109 Copynumber: 3.0 Consensus size: 107
76598144 GAAAGATGAA
* *
76598154 TACTTTCCTCTCTTCTTAAACATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
1 TACTTTCATCT-TT-TTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
* *
76598219 TATAATAAACAATTCAAGTCATTAATCCATGCATATTGGTCGGC
64 CATAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
76598263 TACTTTCATC--TTT---TATAATATATTAACATATATT-AAGTATACCATAATGCCATAAAACA
1 TACTTTCATCTTTTTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACA
*
76598322 TAATAAATAATTCAAGTCAGTAATCCATGCATATTGGTCGGC
66 TAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
76598364 TACTTTCATCTTTTATTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
1 TACTTTCATC-TTT-TTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAA
76598429 CATAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
64 CATAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
76598473 CGTTAATTCC
Statistics
Matches: 196, Mismatches: 6, Indels: 16
0.90 0.03 0.07
Matches are distributed among these distances:
101 74 0.38
102 20 0.10
104 1 0.01
105 4 0.02
106 1 0.01
108 21 0.11
109 75 0.38
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (107 bp):
TACTTTCATCTTTTTAAATATAATATATTAACATATATTAAAGTATACCATAATGCCATAAAACA
TAATAAATAATTCAAGTCATTAATCCATGCATATTGGTCGGC
Found at i:76600568 original size:22 final size:22
Alignment explanation
Indices: 76600542--76600585 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
76600532 AGATTTTGAG
76600542 GAAGTGATTAAGAACTAAAATT
1 GAAGTGATTAAGAACTAAAATT
76600564 GAAGTGATTAAGAACTAAAATT
1 GAAGTGATTAAGAACTAAAATT
76600586 TAACTAAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.05, G:0.18, T:0.27
Consensus pattern (22 bp):
GAAGTGATTAAGAACTAAAATT
Found at i:76602126 original size:27 final size:27
Alignment explanation
Indices: 76602096--76602150 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
76602086 TATTATAGAA
*
76602096 TTAATTAAAA-TTAAATATTTTCATAAT
1 TTAAGTAAAATTTAAATATTTT-ATAAT
*
76602123 TTAAGTAAAATTTAATTATTTTATAAT
1 TTAAGTAAAATTTAAATATTTTATAAT
76602150 T
1 T
76602151 ATATTATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 15 0.60
28 10 0.40
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (27 bp):
TTAAGTAAAATTTAAATATTTTATAAT
Found at i:76605582 original size:16 final size:16
Alignment explanation
Indices: 76605537--76605583 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
76605527 AAATTAAATT
76605537 AAATTAA-CTAAATGC
1 AAATTAATCTAAATGC
* *
76605552 AAAGTGATCCTAAATGC
1 AAATTAAT-CTAAATGC
76605569 AAATTAATCTAAATG
1 AAATTAATCTAAATG
76605584 TAATGTATGC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 5 0.19
16 7 0.27
17 14 0.54
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.28
Consensus pattern (16 bp):
AAATTAATCTAAATGC
Found at i:76623332 original size:17 final size:17
Alignment explanation
Indices: 76623310--76623342 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
76623300 TTTTACATTC
76623310 TCTTTCCCTTCCCTCCT
1 TCTTTCCCTTCCCTCCT
76623327 TCTTTCCCTTCCCTCC
1 TCTTTCCCTTCCCTCC
76623343 GAGGAGTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (17 bp):
TCTTTCCCTTCCCTCCT
Found at i:76624738 original size:5 final size:6
Alignment explanation
Indices: 76624698--76624740 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
76624688 CACTAATCCC
** *
76624698 AAAAAT AAAAAT AAAATAT ATTAGT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAA-AT AAAAAT AAAAAT AAAAAT AAAAAT
76624741 TGTATCTATA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
6 26 0.87
7 4 0.13
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (6 bp):
AAAAAT
Found at i:76625662 original size:53 final size:53
Alignment explanation
Indices: 76625604--76625709 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
76625594 GTTTGTATTC
76625604 GATTGATGAAGTGCAATAATCCTCAAATGTTTAATCCCATTTACATAGCAAGT
1 GATTGATGAAGTGCAATAATCCTCAAATGTTTAATCCCATTTACATAGCAAGT
*
76625657 GATTGATGAAGTGCAATAATCCTCAAATGTTTAATCGCATTTACATAGCAAGT
1 GATTGATGAAGTGCAATAATCCTCAAATGTTTAATCCCATTTACATAGCAAGT
76625710 CCTCCAAAGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (53 bp):
GATTGATGAAGTGCAATAATCCTCAAATGTTTAATCCCATTTACATAGCAAGT
Found at i:76627114 original size:22 final size:22
Alignment explanation
Indices: 76627089--76627137 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
76627079 CCACAGAGTC
*
76627089 TCATACTACC-ATTACAGGGCTT
1 TCATACTACCAATTA-AGGGATT
76627111 TCATACTACCAATTAAGGGATT
1 TCATACTACCAATTAAGGGATT
76627133 TCATA
1 TCATA
76627138 TACTGGTGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (22 bp):
TCATACTACCAATTAAGGGATT
Found at i:76628603 original size:21 final size:19
Alignment explanation
Indices: 76628579--76628628 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
76628569 CAAGTTAAAC
76628579 AAAAGGAAAAAATTGTAAAAT
1 AAAAGGAAAAAATTG--AAAT
**
76628600 AAAAGGACTAAATTGAAAT
1 AAAAGGAAAAAATTGAAAT
*
76628619 AAAAGTAAAA
1 AAAAGGAAAA
76628629 CTAAAATAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 11 0.46
21 13 0.54
ACGTcount: A:0.66, C:0.02, G:0.14, T:0.18
Consensus pattern (19 bp):
AAAAGGAAAAAATTGAAAT
Found at i:76631534 original size:28 final size:28
Alignment explanation
Indices: 76631502--76631560 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
76631492 CAAGGAGTTA
*
76631502 TTTACACAAGCCAATCAGTTTCCAAACG
1 TTTACACAAGCCAATCAATTTCCAAACG
76631530 TTTACACAAGCCAATCAATTTCCAAACG
1 TTTACACAAGCCAATCAATTTCCAAACG
76631558 TTT
1 TTT
76631561 TTTCTCATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.08, T:0.29
Consensus pattern (28 bp):
TTTACACAAGCCAATCAATTTCCAAACG
Found at i:76636066 original size:48 final size:48
Alignment explanation
Indices: 76635995--76636779 Score: 1114
Period size: 48 Copynumber: 16.1 Consensus size: 48
76635985 NNNNNNNNNN
76635995 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
76636043 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
* *
76636091 TATATGTGGTAAAGGCGAATGGCTAGTGTGAAATATGCACGAGATCGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT----G-TA-CGAGATATG
76636145 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
* *
76636193 TATATGTGGTAAAGGCGAATGGCTAGTGTGAAATATGCACGAGATCGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT----G-TA-CGAGATATG
* * * *
76636247 TATATGTGGTAAAGCCGAATGGGTAATGTGAAATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
* *
76636295 TATATGTGGTAAAGCCGAATGGCTTGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
* *
76636343 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGACATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
*
76636391 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
* * *
76636439 CATATGTGGTAAAGGCGAATGGCTAGTGTGAAATATATACGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
*
76636487 TATATGTGGTAAAGGCGAATGGCTAGTGTGAAATATGTACGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
* *
76636535 TATATGTGGTAAAGGCGAATGGCTAGTGTGAAATATGCACGAGATCGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT----G-TA-CGAGATATG
*
76636589 TATATGTGGTAAAGCCGAATGCCTAGTGTGAAATATGTAC------TG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
*
76636631 TATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
* *
76636679 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
* ** * *
76636727 TATGTGTGGTAAAGCTAAATGGCTAGTGTGAAATATGTAGGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
76636775 TATAT
1 TATAT
76636780 ATTGTGGTCG
Statistics
Matches: 670, Mismatches: 43, Indels: 48
0.88 0.06 0.06
Matches are distributed among these distances:
42 40 0.06
48 490 0.73
49 3 0.00
50 2 0.00
52 3 0.00
53 3 0.00
54 129 0.19
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATG
Found at i:76636961 original size:37 final size:37
Alignment explanation
Indices: 76636911--76637051 Score: 255
Period size: 37 Copynumber: 3.8 Consensus size: 37
76636901 TGGAAATATA
76636911 GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
1 GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
**
76636948 GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTAC
1 GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
76636985 GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
1 GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
*
76637022 GTCCGGGTAAGACCCGATAACTACGTGTGG
1 GTCCGGGTAAGACCCGATGACTACGTGTGG
76637052 GGACTATTCG
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.24
Consensus pattern (37 bp):
GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
Found at i:76638389 original size:40 final size:40
Alignment explanation
Indices: 76638327--76638485 Score: 255
Period size: 40 Copynumber: 4.0 Consensus size: 40
76638317 TTGAGAATTA
*
76638327 TATAGCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGT
* * *
76638367 TATGTCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGT
*
76638407 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGT
* *
76638447 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTG
76638486 ATGTGCATTG
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 110 1.00
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGT
Found at i:76638699 original size:25 final size:25
Alignment explanation
Indices: 76638649--76638699 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
76638639 TGTGTAACAA
* *
76638649 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
76638674 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
76638699 C
1 C
76638700 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:76641417 original size:48 final size:48
Alignment explanation
Indices: 76641355--76641988 Score: 926
Period size: 48 Copynumber: 13.0 Consensus size: 48
76641345 TATATATGTG
* * *
76641355 TGTGGTAAAGCCGAATGGCTAATGTGTAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
76641403 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
** *
76641451 TGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAGATATGTATT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
76641499 TGTGGTAAAGCCGAATGGCTAGTCTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
76641547 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
76641595 TGTGGTAAAGCCGTATGGCTAGTGTGTAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * * *
76641643 TGTGGTAAAGCCGAACGACTAGTGTGTAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
76641691 TGTTGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
76641739 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGCACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
76641787 TGTGGTAAAGCCGAATGGCTACTGTGAAATATGCACGAGATATACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATAT------G-TAT--GAGATATGTATA
* *
76641844 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATC
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
76641892 TGTGGTAAAGCCAAATGGCTAGTGTGAAATATGAATGAGATATGTATG
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
76641940 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGATGTGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
76641988 T
1 T
76641989 ATTGTGGCCG
Statistics
Matches: 540, Mismatches: 37, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
48 491 0.91
50 3 0.01
51 1 0.00
54 1 0.00
55 1 0.00
57 43 0.08
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:76641980 original size:153 final size:153
Alignment explanation
Indices: 76641676--76641972 Score: 513
Period size: 153 Copynumber: 1.9 Consensus size: 153
76641666 GTGTAATATG
* *
76641676 TACGAGATATGTATATGTTGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATG
1 TACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATGTATATG
* *
76641741 TGGTAAAGCCGAATGGCTAGTGTGAAATATGCACGAGATATGTATATGTGGTAAAGCCGAATGGC
66 TGGTAAAGCCAAATGGCTAGTGTGAAATATGAACGAGATATGTATATGTGGTAAAGCCGAATGGC
76641806 TACTGTGAAATATGCACGAGATA
131 TACTGTGAAATATGCACGAGATA
* *
76641829 TACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATCTG
1 TACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATGTATATG
* *
76641894 TGGTAAAGCCAAATGGCTAGTGTGAAATATGAATGAGATATGTATGTGTGGTAAAGCCGAATGGC
66 TGGTAAAGCCAAATGGCTAGTGTGAAATATGAACGAGATATGTATATGTGGTAAAGCCGAATGGC
*
76641959 TAGTGTGAAATATG
131 TACTGTGAAATATG
76641973 TAGGAGATGT
Statistics
Matches: 135, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
153 135 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (153 bp):
TACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATGTATATG
TGGTAAAGCCAAATGGCTAGTGTGAAATATGAACGAGATATGTATATGTGGTAAAGCCGAATGGC
TACTGTGAAATATGCACGAGATA
Found at i:76642171 original size:37 final size:37
Alignment explanation
Indices: 76642121--76643074 Score: 1863
Period size: 37 Copynumber: 25.8 Consensus size: 37
76642111 GGAAATATAT
76642121 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642158 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642195 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642232 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642269 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642306 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642343 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642380 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642417 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642454 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642491 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642528 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642565 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642602 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642639 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642676 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642713 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642750 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642787 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642824 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642861 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642898 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76642935 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
76642972 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
76643009 TCCAGGTAAGACCCGATGACTACGTTTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
76643046 TCCGGGTAAGAACCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
76643075 GGACTATTCG
Statistics
Matches: 909, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 909 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:76644723 original size:40 final size:40
Alignment explanation
Indices: 76644633--76644785 Score: 184
Period size: 40 Copynumber: 3.8 Consensus size: 40
76644623 TTGAATGATG
* * * *
76644633 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
76644673 TCCTGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76644713 TCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAA
* *
76644754 -CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
76644786 AGTTATATCC
Statistics
Matches: 98, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
40 89 0.91
41 9 0.09
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76651703 original size:83 final size:84
Alignment explanation
Indices: 76651610--76651765 Score: 251
Period size: 83 Copynumber: 1.9 Consensus size: 84
76651600 AGCCCATGGA
* *
76651610 CTAAATCTTGCTATGTTATAGAAATGACACTCGGCCATGGATGCATCATTCTTGCTTGGTG-TTG
1 CTAAATCTTGCTATGTGATAGAAATGACACTCGACCATGGATGCATCATTCTTGCTTGGTGTTTG
76651674 ATGTTGTGTTGGTGAGATT
66 ATGTTGTGTTGGTGAGATT
* * * *
76651693 CTAAATCTTGCTATGTGATGGAAATGGCACTTGACCATGGATGCATCATTCTTGGTTGGTGTTTG
1 CTAAATCTTGCTATGTGATAGAAATGACACTCGACCATGGATGCATCATTCTTGCTTGGTGTTTG
76651758 ATGTTGTG
66 ATGTTGTG
76651766 GTGATGAGGC
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
83 55 0.83
84 11 0.17
ACGTcount: A:0.21, C:0.14, G:0.26, T:0.38
Consensus pattern (84 bp):
CTAAATCTTGCTATGTGATAGAAATGACACTCGACCATGGATGCATCATTCTTGCTTGGTGTTTG
ATGTTGTGTTGGTGAGATT
Found at i:76652574 original size:40 final size:40
Alignment explanation
Indices: 76652530--76652753 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
76652520 AAGTGAATAT
* * * * **
76652530 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
76652570 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* *
76652610 ATCCGAGTTAAGTCCCGAAGGAATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
76652650 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
76652690 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
76652729 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
76652754 TGAACGAGGA
Statistics
Matches: 167, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 35 0.21
40 132 0.79
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:76656369 original size:27 final size:26
Alignment explanation
Indices: 76656321--76656380 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
76656311 GCGAGGTTGC
*
76656321 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
76656348 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
*
76656374 CAAATAT
1 CAGATAT
76656381 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:76656467 original size:27 final size:26
Alignment explanation
Indices: 76656419--76656470 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
76656409 GCGAGGCTGC
*
76656419 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
76656445 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
76656471 TTGCAACGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:76657153 original size:27 final size:27
Alignment explanation
Indices: 76657123--76657241 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
76657113 GGGGCAAAAT
* * * *
76657123 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
76657150 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
76657177 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
76657204 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
76657231 GGTAATTCTAC
1 GGTAATTCTAC
76657242 AACTTATCCA
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Done.