Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 234 of 279
Found at i:76657225 original size:54 final size:54
Alignment explanation
Indices: 76657124--76657241 Score: 173
Period size: 54 Copynumber: 2.2 Consensus size: 54
76657114 GGGCAAAATG
* * *
76657124 GTAATTTTACCCCATAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
* * * *
76657178 GTATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
76657232 GTAATTCTAC
1 GTAATTCTAC
76657242 AACTTATCCA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:76669704 original size:21 final size:21
Alignment explanation
Indices: 76669648--76669690 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
76669638 GCTTTATGTT
*
76669648 AGGAATAATAAAATAAAGAAC
1 AGGAAGAATAAAATAAAGAAC
76669669 AGGAAGAATAAAATAAAGAAC
1 AGGAAGAATAAAATAAAGAAC
76669690 A
1 A
76669691 TAGGCAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.67, C:0.05, G:0.16, T:0.12
Consensus pattern (21 bp):
AGGAAGAATAAAATAAAGAAC
Found at i:76671088 original size:40 final size:40
Alignment explanation
Indices: 76671025--76671252 Score: 248
Period size: 40 Copynumber: 5.7 Consensus size: 40
76671015 TATTCAGATG
*
76671025 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAATGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATGACT
* * * *
76671065 A-ATTCCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATGACT
* * * *
76671105 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGGGAGTTACA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATGACT
* *
76671145 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCG-AGGTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATG-ACT
* *
76671185 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATGA-CT
* ** *
76671225 ATATCC-GGCTAAACCCCGAAGGTATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
76671253 GTTGGGAATG
Statistics
Matches: 160, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 21 0.13
40 138 0.86
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATGACT
Found at i:76671158 original size:80 final size:80
Alignment explanation
Indices: 76671025--76671218 Score: 291
Period size: 80 Copynumber: 2.4 Consensus size: 80
76671015 TATTCAGATG
* *
76671025 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAATGACTAATTCCGGGCTAAGTCCCAAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATGACTAATACCGGGCTAAGTCCCAAAGGCA
* *
76671090 TTTGTGCGAGTTACT
66 ATTGTGCGAGGTACT
* * * *
76671105 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGGGAGTTAC-AATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATGACTAAT-ACCGGGCTAAGTCCCAAAGGC
76671169 AATTGTGCGAGGTACT
65 AATTGTGCGAGGTACT
*
76671185 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGA
76671219 GTAGCTATAT
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
79 3 0.03
80 100 0.97
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATGACTAATACCGGGCTAAGTCCCAAAGGCA
ATTGTGCGAGGTACT
Found at i:76679308 original size:40 final size:40
Alignment explanation
Indices: 76679114--76679335 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 40
76679104 TATTCGGATG
* * *
76679114 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAATGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
76679154 A-ATTCCGGGCTAAGCCCCAAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
76679194 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGGGAGTTACA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
76679234 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
76679274 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
76679314 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
76679336 TACTTGGTTG
Statistics
Matches: 160, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 17 0.11
40 142 0.89
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:76683116 original size:44 final size:43
Alignment explanation
Indices: 76683062--76683218 Score: 151
Period size: 42 Copynumber: 3.7 Consensus size: 43
76683052 TAAATTATCG
*
76683062 TGTAAGACCATGTCTGGGACATAGGCATCGAAT-TGAAATTTACA
1 TGTAAGACCATGTCCGGGACATAGGCATC-AATCTG-AATTTACA
* *
76683106 TGTAAGACCATGTCCGGGACATCGGCATCATATCTG-ATTT-CG
1 TGTAAGACCATGTCCGGGACATAGGCATCA-ATCTGAATTTACA
* * * * *
76683148 TATAAGACCCTATCTGGGACAGAGGCATCAATACTGAA-TTACA
1 TGTAAGACCATGTCCGGGACATAGGCATCAAT-CTGAATTTACA
* * *
76683191 TGTAAGACCACGTCCGAGACATTGGCAT
1 TGTAAGACCATGTCCGGGACATAGGCAT
76683219 TATACCCATT
Statistics
Matches: 90, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
41 2 0.02
42 30 0.33
43 27 0.30
44 29 0.32
45 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (43 bp):
TGTAAGACCATGTCCGGGACATAGGCATCAATCTGAATTTACA
Found at i:76683212 original size:85 final size:86
Alignment explanation
Indices: 76683059--76683218 Score: 218
Period size: 85 Copynumber: 1.9 Consensus size: 86
76683049 ATCTAAATTA
* * * * *
76683059 TCGTGTAAGACCATGTCTGGGACATAGGCATCGAATTGAAATTTACATGTAAGACCATGTCCGGG
1 TCGTATAAGACCATATCTGGGACAGAGGCATCGAATTGAAATTTACATGTAAGACCACGTCCGAG
76683124 ACATCGGCATCATATCTGATT
66 ACATCGGCATCATATCTGATT
*
76683145 TCGTATAAGACCCTATCTGGGACAGAGGCATC-AATACTG-AA-TTACATGTAAGACCACGTCCG
1 TCGTATAAGACCATATCTGGGACAGAGGCATCGAAT--TGAAATTTACATGTAAGACCACGTCCG
*
76683207 AGACATTGGCAT
64 AGACATCGGCAT
76683219 TATACCCATT
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
85 33 0.51
86 30 0.46
87 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.26
Consensus pattern (86 bp):
TCGTATAAGACCATATCTGGGACAGAGGCATCGAATTGAAATTTACATGTAAGACCACGTCCGAG
ACATCGGCATCATATCTGATT
Found at i:76686621 original size:43 final size:43
Alignment explanation
Indices: 76686536--76686621 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
76686526 GGAGTTCATG
* **
76686536 AAGTTGACGCCCTCACTTTATTATCAGCTCAGGTATTGTCTAT
1 AAGTTGACGCCCTCACTTTACTATCAGCTCAGGTATCATCTAT
*
76686579 AAGTTGACGCCCTCA-TTTCGCTATCAGCTCAGGTATCATCTAT
1 AAGTTGACGCCCTCACTTT-ACTATCAGCTCAGGTATCATCTAT
76686622 TTCCTCTATG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 3 0.08
43 35 0.92
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (43 bp):
AAGTTGACGCCCTCACTTTACTATCAGCTCAGGTATCATCTAT
Found at i:76690296 original size:27 final size:27
Alignment explanation
Indices: 76690258--76690312 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
76690248 TGGGAACAAA
76690258 TACATCTTAGTTGCTGTGGATTATGTG
1 TACATCTTAGTTGCTGTGGATTATGTG
76690285 TACATCTTAGTTGCTGTGGATTATGTG
1 TACATCTTAGTTGCTGTGGATTATGTG
76690312 T
1 T
76690313 CCAAGTGGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.11, G:0.25, T:0.45
Consensus pattern (27 bp):
TACATCTTAGTTGCTGTGGATTATGTG
Found at i:76691964 original size:32 final size:32
Alignment explanation
Indices: 76691928--76691992 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
76691918 GCAAAAGAAC
76691928 TAGATCGTCGAAGATTACTCCTGAAAACTCGA
1 TAGATCGTCGAAGATTACTCCTGAAAACTCGA
76691960 TAGATCGTCGAAGATTACTCCTGAAAACTCGA
1 TAGATCGTCGAAGATTACTCCTGAAAACTCGA
76691992 T
1 T
76691993 TGTGATTGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (32 bp):
TAGATCGTCGAAGATTACTCCTGAAAACTCGA
Found at i:76698194 original size:79 final size:80
Alignment explanation
Indices: 76698050--76698226 Score: 248
Period size: 79 Copynumber: 2.2 Consensus size: 80
76698040 TTAGTTTACC
* *
76698050 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCCTAGTTTGT-AAATTACCAAAATACCCCTGGATTACAAAATTACCAAA
*
76698115 ATACCCCTGGTTTGTA
65 ATACCCCTGATTTGTA
* ** *
76698131 AAATTACCAAAATACCCCTGGTTTGT-AATTACCAAAATACCCCTGGATTGTAAAATTATCAAAA
1 AAATTACCAAAATACCCCTAGTTTGTAAATTACCAAAATACCCCTGGATTACAAAATTACCAAAA
*
76698195 TACCCCTGATTTGTG
66 TACCCCTGATTTGTA
**
76698210 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
76698227 TCTACCTGTA
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
79 61 0.71
81 25 0.29
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTAGTTTGTAAATTACCAAAATACCCCTGGATTACAAAATTACCAAAA
TACCCCTGATTTGTA
Found at i:76698208 original size:27 final size:27
Alignment explanation
Indices: 76698050--76698285 Score: 232
Period size: 27 Copynumber: 8.8 Consensus size: 27
76698040 TTAGTTTACC
76698050 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* * **
76698077 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
*
76698104 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
76698131 AAATTACCAAAATACCCCTGGTTTGT-
1 AAATTACCAAAATACCCCTGATTTGTA
76698157 -AATTACCAAAATACCCCTGGA-TTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *
76698183 AAATTATCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** **
76698210 AAATTACTGAAATACCCTCT-ACCTGTA
1 AAATTACCAAAATACCC-CTGATTTGTA
*** *
76698237 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* *
76698264 AAATTACCGAAGTACCCCTGAT
1 AAATTACCAAAATACCCCTGAT
76698286 ATACAGAATT
Statistics
Matches: 178, Mismatches: 22, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
25 24 0.13
26 5 0.03
27 143 0.80
28 6 0.03
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:76698253 original size:106 final size:106
Alignment explanation
Indices: 76698051--76698242 Score: 251
Period size: 106 Copynumber: 1.8 Consensus size: 106
76698041 TAGTTTACCA
* * *
76698051 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
1 AATTACCAAAATACCCCTAGATTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAAA
***
76698116 TACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGT
66 TACCCCTGACCTGTAAAATTACCAAAATACCCCTGGTTTGT
* * *** **
76698157 AATTACCAAAATACCCCTGGATTGTAAAATTATCAAAATACCCCTGATTTGTGAAATTACTGAAA
1 AATTACCAAAATACCCCTAGATTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAAA
76698222 TACCCTCT-ACCTGTAAAATTA
66 TACCC-CTGACCTGTAAAATTA
76698243 TTGAAATACC
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
106 70 0.97
107 2 0.03
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (106 bp):
AATTACCAAAATACCCCTAGATTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAAA
TACCCCTGACCTGTAAAATTACCAAAATACCCCTGGTTTGT
Found at i:76698263 original size:106 final size:107
Alignment explanation
Indices: 76698050--76698283 Score: 240
Period size: 106 Copynumber: 2.2 Consensus size: 107
76698040 TTAGTTTACC
* * * *
76698050 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGATTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAA
*** **
76698115 ATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGT
66 ATACCCCTGACCTGTAAAATTACCAAAATACCCCTGACTTGT
* *** **
76698157 -AATTACCAAAATACCCCTGGATTGTAAAATTATCAAAATACCCCTGATTTGTGAAATTACTGAA
1 AAATTACCAAAATACCCCTGGATTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAA
***
76698221 ATACCCTCT-ACCTGTAAAATTATTGAAATA-CCCTCGACTTGT
66 ATACCC-CTGACCTGTAAAATTACCAAAATACCCCT-GACTTGT
* *
76698263 AAAATTACCGAAGTACCCCTG
1 -AAATTACCAAAATACCCCTG
76698284 ATATACAGAA
Statistics
Matches: 103, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
105 4 0.04
106 80 0.78
107 2 0.02
108 17 0.17
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (107 bp):
AAATTACCAAAATACCCCTGGATTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAA
ATACCCCTGACCTGTAAAATTACCAAAATACCCCTGACTTGT
Found at i:76698333 original size:27 final size:27
Alignment explanation
Indices: 76698210--76698335 Score: 78
Period size: 27 Copynumber: 4.7 Consensus size: 27
76698200 CTGATTTGTG
* * **
76698210 AAATTACTGAAATACCCTCTACCTGTA
1 AAATTACTGAAATACCCTCGACTTACA
* **
76698237 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACTTACA
* *
76698264 AAATTACCGAAGTACCC-CTGA-TATACA
1 AAATTACTGAAATACCCTC-GACT-TACA
* *** *
76698291 GAATTA-TCGTTTTACCCTCGATTTACA
1 AAATTACT-GAAATACCCTCGACTTACA
76698318 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
76698336 TGTTGGGTAG
Statistics
Matches: 76, Mismatches: 17, Indels: 12
0.72 0.16 0.11
Matches are distributed among these distances:
26 2 0.03
27 71 0.93
28 3 0.04
ACGTcount: A:0.37, C:0.23, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACTTACA
Found at i:76698356 original size:27 final size:27
Alignment explanation
Indices: 76698319--76698675 Score: 457
Period size: 27 Copynumber: 13.3 Consensus size: 27
76698309 CGATTTACAA
* * *
76698319 AATTACTGAAATACCCTTGTTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76698346 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76698373 AAATACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
76698400 AATTATCGCAATACCCCTATATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
76698427 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76698454 AATTACC-AGAATACCCTTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
76698481 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76698508 AATTACCGAAATAACCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76698535 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76698562 AATTACTGAAATACCCCTGTAGCGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76698589 -ATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76698615 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
76698642 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
76698669 AATTACC
1 AATTACC
76698676 ATTTTGCCCC
Statistics
Matches: 287, Mismatches: 40, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 24 0.08
27 262 0.91
28 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:76699134 original size:6 final size:6
Alignment explanation
Indices: 76699125--76699220 Score: 99
Period size: 6 Copynumber: 15.7 Consensus size: 6
76699115 ATTCACATTT
* *
76699125 TGATTC TGATTC TG-TTACC TAATTC TGATTC TGATTC TG-TTACC TAATTC
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATT--C TGATTC
*
76699175 TGATTC TGGTTC TGATTC TGATTC TGATTC TGATTC T-AGTTC TGAT
1 TGATTC TGATTC TGATTC TGATTC TGATTC TGATTC TGA-TTC TGAT
76699221 AATGTTTCTT
Statistics
Matches: 76, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
5 5 0.07
6 62 0.82
7 5 0.07
8 4 0.05
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:76699153 original size:25 final size:25
Alignment explanation
Indices: 76699125--76699211 Score: 133
Period size: 25 Copynumber: 3.5 Consensus size: 25
76699115 ATTCACATTT
76699125 TGATTCTGATTCTGTTACCTAATTC
1 TGATTCTGATTCTGTTACCTAATTC
76699150 TGATTCTGATTCTGTTACCTAATTC
1 TGATTCTGATTCTGTTACCTAATTC
* *
76699175 TGATTCTGGTTCTGATT--CTGATTC
1 TGATTCTGATTCTG-TTACCTAATTC
76699199 TGATTCTGATTCT
1 TGATTCTGATTCT
76699212 AGTTCTGATA
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
24 18 0.31
25 38 0.66
26 2 0.03
ACGTcount: A:0.17, C:0.18, G:0.15, T:0.49
Consensus pattern (25 bp):
TGATTCTGATTCTGTTACCTAATTC
Found at i:76701202 original size:27 final size:27
Alignment explanation
Indices: 76701171--76701376 Score: 225
Period size: 27 Copynumber: 7.6 Consensus size: 27
76701161 TTAGTTTACC
* *
76701171 AAATTATCAAAATTCCCCTTGTTTGTA
1 AAATTACCAAAATACCCCTTGTTTGTA
* * *
76701198 AAATTACCAAAA-AGCCATTGGTTTATA
1 AAATTACCAAAATACCCCTT-GTTTGTA
76701225 AAATTACCAAAATACCCCTTGTTTGTA
1 AAATTACCAAAATACCCCTTGTTTGTA
* * * *
76701252 AAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTTGTTTGTA
* **
76701279 AAATTACAAAAATACCCCCAGTTTGTA
1 AAATTACCAAAATACCCCTTGTTTGTA
*
76701306 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTTGTTTGTA
* ** *
76701333 AAATTATCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTTGTTTGTA
**
76701360 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
76701377 TCGACCTGTA
Statistics
Matches: 149, Mismatches: 28, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
26 4 0.03
27 140 0.94
28 5 0.03
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTTGTTTGTA
Found at i:76701230 original size:54 final size:54
Alignment explanation
Indices: 76701171--76701487 Score: 264
Period size: 54 Copynumber: 5.9 Consensus size: 54
76701161 TTAGTTTACC
* * *
76701171 AAATTATCAAAATTCCCCTTGTTTGTAAAATTACCAAAA-AGCCATTGGTTTATA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATA-CCCTTGGTTTATA
* * * **
76701225 AAATTACCAAAATACCCCTTGTTTGTAAAATTACTAAAATACCCTTTATTTATA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
76701279 AAATTA-CAAAAATACCCCCAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATC-AAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * ** * *** *
76701333 AAATTATCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACCTGTA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * * * *
76701387 AAATTATTAAAATA-CCCTCGACTTGTAAATTTACCAAAGTACCCCTGATTTATA
1 AAATTATCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *** * **
76701441 GAATTATCATTTTA-CCCTCGATTTACAAAATTACCAAAATACCCTTG
1 AAATTATCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCTTG
76701488 TAGGGTTGAA
Statistics
Matches: 211, Mismatches: 48, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
53 5 0.02
54 204 0.97
55 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.33
Consensus pattern (54 bp):
AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:76701387 original size:81 final size:81
Alignment explanation
Indices: 76701223--76701446 Score: 229
Period size: 81 Copynumber: 2.8 Consensus size: 81
76701213 CATTGGTTTA
* * *
76701223 TAAAATTACCAAAATACCCCTTGTTTGTAAAATTACTAAAATACCCTTTATTTATAAAATTACAA
1 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTAATTTATAAAATTACAA
**
76701288 AAATACCCCCAGTTTG
66 AAATACCCCCAGCCTG
* * *
76701304 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCAAAATACCCCTAATTTGTGAAATTACT
1 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACT-AAAATACCCCTAATTTATAAAATTACA
* *
76701368 GAAATACCCTC-GACCTG
65 AAAATACCCCCAG-CCTG
** ** * * * * *
76701385 TAAAATTATTAAAATA-CCCTCGACTTGTAAATTTACCAAAGTACCCCTGATTTATAGAATTA
1 TAAAATTACCAAAATACCCCT-GGTTTGTAAAATTACTAAAATACCCCTAATTTATAAAATTA
76701447 TCATTTTACC
Statistics
Matches: 118, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
80 6 0.05
81 112 0.95
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (81 bp):
TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTAATTTATAAAATTACAA
AAATACCCCCAGCCTG
Found at i:76701483 original size:27 final size:27
Alignment explanation
Indices: 76701192--76701485 Score: 204
Period size: 27 Copynumber: 10.9 Consensus size: 27
76701182 ATTCCCCTTG
* * *
76701192 TTTGTAAAATTACCAAAA-AGCCATTGG
1 TTTGTAAAATTACCAAAATA-CCCTCGA
* *
76701219 TTTATAAAATTACCAAAATACCCCTTG-
1 TTTGTAAAATTACCAAAATA-CCCTCGA
* **
76701246 TTTGTAAAATTACTAAAATACCCTTTA
1 TTTGTAAAATTACCAAAATACCCTCGA
* * *
76701273 TTTATAAAATTACAAAAATACCC-CCA
1 TTTGTAAAATTACCAAAATACCCTCGA
*
76701299 GTTTGTAAAATTACCAAAATACCC-CTGG
1 -TTTGTAAAATTACCAAAATACCCTC-GA
* *
76701327 TTTGTAAAATTATCAAAATACCC-CTAA
1 TTTGTAAAATTACCAAAATACCCTC-GA
* **
76701354 TTTGTGAAATTACTGAAATACCCTCGA
1 TTTGTAAAATTACCAAAATACCCTCGA
** **
76701381 CCTGTAAAATTATTAAAATACCCTCGA
1 TTTGTAAAATTACCAAAATACCCTCGA
* * *
76701408 CTTGTAAATTTACCAAAGTACCC-CTGA
1 TTTGTAAAATTACCAAAATACCCTC-GA
* * * ***
76701435 TTTATAGAATTATCATTTTACCCTCGA
1 TTTGTAAAATTACCAAAATACCCTCGA
**
76701462 TTTACAAAATTACCAAAATACCCT
1 TTTGTAAAATTACCAAAATACCCT
76701486 TGTAGGGTTG
Statistics
Matches: 214, Mismatches: 46, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
26 7 0.03
27 199 0.93
28 8 0.04
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.33
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCTCGA
Found at i:76701502 original size:27 final size:27
Alignment explanation
Indices: 76701469--76701852 Score: 421
Period size: 27 Copynumber: 14.3 Consensus size: 27
76701459 CGATTTACAA
* * *
76701469 AATTACCAAAATACCCTTGTAGGGTTG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76701496 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76701523 AAATATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76701550 AATTATCGCAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76701577 AATTACCGAAGTACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
76701604 AATTATC-ACAATACCCTTGTTGGATAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* *
76701631 AATTACCGAAATACCCCTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76701658 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76701685 AATTACCAAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76701712 AATTACCGAAATACCCTTATAGGGAAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76701739 AATTATCGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76701766 AATTATCGAAATA-CCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76701792 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
76701819 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
76701846 AATTACC
1 AATTACC
76701853 ATTTTGCCCC
Statistics
Matches: 302, Mismatches: 52, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
26 23 0.08
27 278 0.92
28 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:76702150 original size:26 final size:27
Alignment explanation
Indices: 76702121--76702180 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
76702111 CCACATATAT
*
76702121 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
76702147 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
76702174 ATATCTG
1 ATATCTG
76702181 GCAACCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:76702308 original size:6 final size:6
Alignment explanation
Indices: 76702299--76702410 Score: 79
Period size: 6 Copynumber: 18.3 Consensus size: 6
76702289 TTACATTCAC
* * *
76702299 ATTCTG ATTCTG ATTCTG -TACATG ATACTG ATTCTG ATTCT- ATTACCTA
1 ATTCTG ATTCTG ATTCTG ATTC-TG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
76702348 ATTCTA ATTCTG GTTCTG ATTCTG ATTCTG -TTACTTG ATTTTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG
76702397 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
76702411 AATGTTTCTT
Statistics
Matches: 89, Mismatches: 7, Indels: 20
0.77 0.06 0.17
Matches are distributed among these distances:
5 8 0.09
6 68 0.76
7 8 0.09
8 5 0.06
ACGTcount: A:0.21, C:0.15, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:76704391 original size:27 final size:27
Alignment explanation
Indices: 76704361--76704677 Score: 267
Period size: 27 Copynumber: 11.7 Consensus size: 27
76704351 TTAGTTTACC
* *
76704361 AAATTACCGAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* **
76704388 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
76704415 AAATTACCAAAATACCCTT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* * *
76704442 AAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
76704469 AAATTACCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
76704496 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * * * *
76704523 CAATTATCAAAATACCCCTGATTTATG
1 AAATTACCAAAATACCCTTGATTTGTA
** * **
76704550 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*** * *
76704577 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * *
76704604 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* * *** * **
76704631 GAATTATCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
*
76704658 AAATTACCGAAATACCCTTG
1 AAATTACCAAAATACCCTTG
76704678 TAGGGTTGAA
Statistics
Matches: 234, Mismatches: 54, Indels: 4
0.80 0.18 0.01
Matches are distributed among these distances:
27 233 1.00
28 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTGTA
Found at i:76704692 original size:27 final size:27
Alignment explanation
Indices: 76704659--76705043 Score: 484
Period size: 27 Copynumber: 14.2 Consensus size: 27
76704649 CGATTTACAA
* *
76704659 AATTACCGAAATACCCTTGTAGGGTTG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76704686 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76704713 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76704740 AATTATCGCAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
76704767 AATTATCGACGTACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76704794 AATTATC-AGAATACCCTTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
76704821 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76704848 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76704875 AAATACCAAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
76704902 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76704929 AATTATCGAAATACCCTTGTAGGGGTAG
1 AATTACCGAAATACCCCTGTA-GGGTAG
*
76704957 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76704984 AAATAACGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
76705011 AATTACTGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
76705038 AATTAC
1 AATTAC
76705044 AATTTTGCCC
Statistics
Matches: 314, Mismatches: 41, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.00
27 288 0.92
28 25 0.08
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:76705342 original size:26 final size:27
Alignment explanation
Indices: 76705313--76705372 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
76705303 CCACATATAT
*
76705313 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
76705339 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
76705366 ATATCTG
1 ATATCTG
76705373 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:76705500 original size:6 final size:6
Alignment explanation
Indices: 76705491--76705603 Score: 81
Period size: 6 Copynumber: 18.3 Consensus size: 6
76705481 TTGCATTCAC
* *
76705491 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
76705541 ATTCTG ATTCTG GTTCTG ATTTTG ATTCTG -TTACTTG ATTTTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG
76705590 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
76705604 AATGTTTCTT
Statistics
Matches: 86, Mismatches: 10, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
5 7 0.08
6 66 0.77
7 8 0.09
8 5 0.06
ACGTcount: A:0.18, C:0.15, G:0.16, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:76705522 original size:25 final size:25
Alignment explanation
Indices: 76705494--76705558 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
76705484 CATTCACATT
*
76705494 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
76705519 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
*
76705544 CTGATTCTGGTTCTG
1 CTGATTCTGATTCTG
76705559 ATTTTGATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:76705581 original size:19 final size:18
Alignment explanation
Indices: 76705491--76705586 Score: 81
Period size: 19 Copynumber: 5.2 Consensus size: 18
76705481 TTGCATTCAC
76705491 ATTCTGATT-CTGATTCTG
1 ATTCTG-TTACTGATTCTG
*
76705509 -TTACCTGATACTGATTCTG
1 ATT--CTGTTACTGATTCTG
*
76705528 ATTCTGTTACCTAATTCTG
1 ATTCTGTTA-CTGATTCTG
*
76705547 ATTCTGGTT-CTGATTTTG
1 ATTCT-GTTACTGATTCTG
*
76705565 ATTCTGTTACTTGATTTTG
1 ATTCTGTTAC-TGATTCTG
76705584 ATT
1 ATT
76705587 TTGATTCTAG
Statistics
Matches: 65, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
17 5 0.08
18 19 0.29
19 36 0.55
20 5 0.08
ACGTcount: A:0.18, C:0.16, G:0.16, T:0.51
Consensus pattern (18 bp):
ATTCTGTTACTGATTCTG
Found at i:76707584 original size:27 final size:27
Alignment explanation
Indices: 76707554--76707732 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
76707544 TTAGTTTACC
76707554 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
76707581 AAATTACCGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
76707608 AAATTACCAAAATATCCCC-AGTTTGTA
1 AAATTACCAAAATA-CCCCTGGTTTGTA
* * ** **
76707635 AAATTACTAAAATACCCTTTATTTAAA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
76707662 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
76707689 AAATTATCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
76707716 AAATTTCTAAAATACCC
1 AAATTACCAAAATACCC
76707733 TCGACCTGTA
Statistics
Matches: 122, Mismatches: 28, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
26 3 0.02
27 116 0.95
28 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:76707618 original size:54 final size:54
Alignment explanation
Indices: 76707547--76707705 Score: 221
Period size: 54 Copynumber: 2.9 Consensus size: 54
76707537 AAATACTTTA
* * *
76707547 GTTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
* *
76707601 GTTTACAAAATTACCAAAATATCCCC-AGTTTGTAAAATTACTAAAATACCCTTT
1 GTTTACAAAATTACCAAAATA-CCCCTAGTTTGTAAAATTACCAAAATACCCTTG
* * * *
76707655 ATTTAAAAAATTACCAAAATACCCTTAGTTTGTAAAATTATCAAAATACCC
1 GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
76707706 CTGATTTGTG
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
53 3 0.03
54 86 0.92
55 4 0.04
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
GTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTG
Found at i:76707720 original size:54 final size:53
Alignment explanation
Indices: 76707554--76707839 Score: 218
Period size: 54 Copynumber: 5.3 Consensus size: 53
76707544 TTAGTTTACC
* * * * *
76707554 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCGAAATACCCTTGGTTTACA
1 AAATTACCAAAATA-CCCTAGTTTGTAAAATTATCAAAATACCCTTGATTTATA
* * *
76707608 AAATTACCAAAATATCCCCAGTTTGTAAAATTA-CTAAAATACCCTTTATTTAAA
1 AAATTACCAAAATA-CCCTAGTTTGTAAAATTATC-AAAATACCCTTGATTTATA
* * *
76707662 AAATTACCAAAATACCCTTAGTTTGTAAAATTATCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCC-TAGTTTGTAAAATTATCAAAATACCCTTGATTTATA
* * * ** ** * *
76707716 AAATTTCTAAAATACCCTCGACCTGTAAAATTATTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTAG-TTTGTAAAATTATCAAAATACCCTTGATTTATA
* * * **** *
76707770 AAATTGCCAAAGTACCCCT-G-ATGTACAAAATTATCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATA-CCCTAGTTTGT--AAAATTATCAAAATACCCTTGATTTATA
*
76707824 AAATTACCGAAATACC
1 AAATTACCAAAATACC
76707840 TTTTAGGGTA
Statistics
Matches: 188, Mismatches: 37, Indels: 15
0.78 0.15 0.06
Matches are distributed among these distances:
52 3 0.02
53 8 0.04
54 172 0.91
55 5 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (53 bp):
AAATTACCAAAATACCCTAGTTTGTAAAATTATCAAAATACCCTTGATTTATA
Found at i:76707746 original size:81 final size:80
Alignment explanation
Indices: 76707577--76707791 Score: 225
Period size: 81 Copynumber: 2.6 Consensus size: 80
76707567 ACCCCTGGTT
** *
76707577 TGTAAAATTACCGAAATACCCTTGGTTTACAAAATTACCAAAATATCCCCAG-TTTGTAAAATTA
1 TGTAAAATTACCGAAATACCCTT-GTTTGTAAAATTACCAAAATA-CCCCTGATTTGTAAAATTA
** **
76707641 CTAAAATACCCTTTATT
64 CTAAAATACCCTCGACC
** * * * *
76707658 TAAAAAATTACCAAAATACCCTTAGTTTGTAAAATTATCAAAATACCCCTGATTTGTGAAATTTC
1 TGTAAAATTACCGAAATACCCTT-GTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTAC
76707723 TAAAATACCCTCGACC
65 TAAAATACCCTCGACC
** * * *
76707739 TGTAAAATTATTGAAATACCCTTGACTTGTAAAATTGCCAAAGTACCCCTGAT
1 TGTAAAATTACCGAAATACCCTTG-TTTGTAAAATTACCAAAATACCCCTGAT
76707792 GTACAAAATT
Statistics
Matches: 109, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
80 6 0.06
81 103 0.94
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
TGTAAAATTACCGAAATACCCTTGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACT
AAAATACCCTCGACC
Found at i:76707785 original size:27 final size:27
Alignment explanation
Indices: 76707554--76707786 Score: 164
Period size: 27 Copynumber: 8.6 Consensus size: 27
76707544 TTAGTTTACC
* **
76707554 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGACTTGTA
* ** **
76707581 AAATTACCGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGACTTGTA
** *
76707608 AAATTACCAAAATATCCCCAG-TTTGTA
1 AAATTACCAAAATA-CCCTTGACTTGTA
* * * **
76707635 AAATTACTAAAATACCCTTTATTTAAA
1 AAATTACCAAAATACCCTTGACTTGTA
*
76707662 AAATTACCAAAATACCCTT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-CTTGTA
* * * *
76707689 AAATTATCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGACTTGTA
* * * *
76707716 AAATTTCTAAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGACTTGTA
***
76707743 AAATTATTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTTGACTTGTA
* *
76707770 AAATTGCCAAAGTACCC
1 AAATTACCAAAATACCC
76707787 CTGATGTACA
Statistics
Matches: 163, Mismatches: 39, Indels: 8
0.78 0.19 0.04
Matches are distributed among these distances:
26 4 0.02
27 154 0.94
28 5 0.03
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGACTTGTA
Found at i:76707839 original size:27 final size:27
Alignment explanation
Indices: 76707554--76707839 Score: 161
Period size: 27 Copynumber: 10.6 Consensus size: 27
76707544 TTAGTTTACC
*
76707554 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * **
76707581 AAATTACCGAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
76707608 AAATTACCAAAATATCCC-C-AGTTTGTA
1 AAATTACCAAAATA-CCCTCGA-TTTGTA
* ** **
76707635 AAATTACTAAAATACCCTTTATTTAAA
1 AAATTACCAAAATACCCTCGATTTGTA
*
76707662 AAATTACCAAAATACCCT-TAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
76707689 AAATTATCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
* * **
76707716 AAATTTCTAAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** * *
76707743 AAATTATTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * **
76707770 AAATTGCCAAAGTACCC-CTGATGTACA
1 AAATTACCAAAATACCCTC-GATTTGTA
* **** *
76707797 AAATTATCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
76707824 AAATTACCGAAATACC
1 AAATTACCAAAATACC
76707840 TTTTAGGGTA
Statistics
Matches: 196, Mismatches: 52, Indels: 22
0.73 0.19 0.08
Matches are distributed among these distances:
26 5 0.03
27 184 0.94
28 7 0.04
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:76707854 original size:27 final size:27
Alignment explanation
Indices: 76707825--76708262 Score: 520
Period size: 27 Copynumber: 16.3 Consensus size: 27
76707815 CGATTTATAA
* *
76707825 AATTACCGAAATA-CCTTTTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76707851 AAATACCGAGATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76707878 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76707905 AATTACCGCAATACCCCTGTATGCTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76707932 AATTACCGAAATATCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76707959 AATTA-CTAGAATACCCTTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* * *
76707986 AATTACTGGAGTACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
76708013 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76708040 AATTACCAAAATATCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
76708067 AATTACCGAAATACAACTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76708094 AATTATCGAAATACCACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
76708121 AATTATCGAAATACCACTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
76708148 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
76708175 AATTACCGAAATACCGTTGTACGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
76708202 AAATACCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
76708229 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
76708256 AATTACC
1 AATTACC
76708263 ATTTTTCCTC
Statistics
Matches: 355, Mismatches: 54, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
26 13 0.04
27 342 0.96
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:76708571 original size:27 final size:26
Alignment explanation
Indices: 76708531--76708590 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
76708521 CCACATATAT
* *
76708531 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
76708557 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
76708584 ATATCTG
1 ATATCTG
76708591 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:76708721 original size:6 final size:6
Alignment explanation
Indices: 76708712--76708833 Score: 126
Period size: 6 Copynumber: 19.8 Consensus size: 6
76708702 CATTCACATC
* *
76708712 CTGATT CTGATT CT-ATT ACCTGATA CTGATT CTGATT CTG-TT ACCTAATT
1 CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT --CTGATT
*
76708762 CTGATT CTGGTT CTGATT CTGATT CTG-TT ACCTGATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
76708811 CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGATT CTGA-TT CTGAT
76708834 AATGTTTCTT
Statistics
Matches: 99, Mismatches: 6, Indels: 22
0.78 0.05 0.17
Matches are distributed among these distances:
5 8 0.08
6 77 0.78
7 8 0.08
8 6 0.06
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:76708744 original size:25 final size:23
Alignment explanation
Indices: 76708712--76708833 Score: 120
Period size: 25 Copynumber: 5.0 Consensus size: 23
76708702 CATTCACATC
*
76708712 CTGATTCTGATTCTATTACCTGATA
1 CTGATTCTGATTCTATT--CTGATT
* *
76708737 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTATT--CTGATT
*
76708762 CTGATTCTGGTTCTGATTCTGATT
1 CTGATTCTGATTCT-ATTCTGATT
76708786 CTG-TTACCTGATTCTGATTCTGATT
1 CTGATT--CTGATTCT-ATTCTGATT
76708811 CTGATTCTGATTCTAGTTCTGAT
1 CTGATTCTGATTCTA-TTCTGAT
76708834 AATGTTTCTT
Statistics
Matches: 85, Mismatches: 7, Indels: 11
0.83 0.07 0.11
Matches are distributed among these distances:
23 3 0.04
24 23 0.27
25 55 0.65
26 4 0.05
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.48
Consensus pattern (23 bp):
CTGATTCTGATTCTATTCTGATT
Found at i:76708778 original size:37 final size:37
Alignment explanation
Indices: 76708731--76708824 Score: 161
Period size: 37 Copynumber: 2.5 Consensus size: 37
76708721 ATTCTATTAC
*
76708731 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATTCTGATT
* *
76708768 CTGGTTCTGATTCTGATTCTGTTACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATTCTGATT
76708805 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
76708825 AGTTCTGATA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTAATTCTGATT
Found at i:76708819 original size:31 final size:31
Alignment explanation
Indices: 76708712--76708818 Score: 139
Period size: 31 Copynumber: 3.5 Consensus size: 31
76708702 CATTCACATC
*
76708712 CTGATTCTGATTCTATTACCTGATACTGATT
1 CTGATTCTGATTCTATTACCTGATTCTGATT
*
76708743 CTGATTCTG-TTACCTAATT--CTGATTCTGGTT
1 CTGATTCTGATT--CT-ATTACCTGATTCTGATT
*
76708774 CTGATTCTGATTCTGTTACCTGATTCTGATT
1 CTGATTCTGATTCTATTACCTGATTCTGATT
76708805 CTGATTCTGATTCT
1 CTGATTCTGATTCT
76708819 GATTCTAGTT
Statistics
Matches: 66, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
29 2 0.03
30 4 0.06
31 53 0.80
32 4 0.06
33 3 0.05
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.48
Consensus pattern (31 bp):
CTGATTCTGATTCTATTACCTGATTCTGATT
Found at i:76714584 original size:39 final size:39
Alignment explanation
Indices: 76714480--76714587 Score: 162
Period size: 39 Copynumber: 2.8 Consensus size: 39
76714470 TGTTTATCTA
* * *
76714480 GACTTAGGGTCTGCAGGCTATGTGCTAGAATTATATCCG
1 GACTTAAGGTCTGCAGGCTATGTGCTGGAATTATAACCG
*
76714519 GACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACCG
1 GACTTAAGGTCTGCAGGCTATGTGCTGGAATTATAACCG
* *
76714558 GTCTTAAGGTCTGCAGGCTACGTGCTGGAA
1 GACTTAAGGTCTGCAGGCTATGTGCTGGAA
76714588 ATATTTCGGG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (39 bp):
GACTTAAGGTCTGCAGGCTATGTGCTGGAATTATAACCG
Found at i:76718745 original size:15 final size:15
Alignment explanation
Indices: 76718713--76718741 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
76718703 ATTTTCTGTG
76718713 TTTATAATGTGTGAA
1 TTTATAATGTGTGAA
76718728 TTTAT-ATGTGTGAA
1 TTTATAATGTGTGAA
76718742 ATTTTTGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (15 bp):
TTTATAATGTGTGAA
Found at i:76719977 original size:56 final size:56
Alignment explanation
Indices: 76719905--76720026 Score: 199
Period size: 56 Copynumber: 2.2 Consensus size: 56
76719895 ACATGTTTGT
* * *
76719905 GAGTAAGACCAAGTTTTATACGTTGGCATCGATATGTGACTTCGATATATGTGTAC
1 GAGTAAGACCAAGTTTTATACGTTGGCATCGATATGTGACTCCAATATATATGTAC
* *
76719961 GAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTCCAATATATATGTGC
1 GAGTAAGACCAAGTTTTATACGTTGGCATCGATATGTGACTCCAATATATATGTAC
76720017 GAGTAAGACC
1 GAGTAAGACC
76720027 CTGTCTGGGA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (56 bp):
GAGTAAGACCAAGTTTTATACGTTGGCATCGATATGTGACTCCAATATATATGTAC
Found at i:76720044 original size:56 final size:56
Alignment explanation
Indices: 76719905--76720055 Score: 162
Period size: 56 Copynumber: 2.7 Consensus size: 56
76719895 ACATGTTTGT
* * * * * * *
76719905 GAGTAAGACCAAGTTTTATACGTTGGCATCGATATGTGACTTCGATATATGTGTAC
1 GAGTAAGACCACGTCTGAGACGTTGGCATCGATATGTGACTCCAATATATATGTAC
* * * *
76719961 GAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTCCAATATATATGTGC
1 GAGTAAGACCACGTCTGAGACGTTGGCATCGATATGTGACTCCAATATATATGTAC
*
76720017 GAGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGA
1 GAGTAAGACCAC-GTCTGAGAC-GTTGGCATCGATATGTGA
76720056 TTACATGTAA
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
55 1 0.01
56 82 0.98
57 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (56 bp):
GAGTAAGACCACGTCTGAGACGTTGGCATCGATATGTGACTCCAATATATATGTAC
Found at i:76722979 original size:27 final size:27
Alignment explanation
Indices: 76722921--76723010 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
76722911 AGGAAGCGTC
*
76722921 CTGGTGGCTA-TGCCACAAATTATCTGTA
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
76722949 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
76722976 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
76723005 CTGGTG
1 CTGGTG
76723011 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 22 0.41
28 25 0.46
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:76723029 original size:55 final size:56
Alignment explanation
Indices: 76722921--76723035 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
76722911 AGGAAGCGTC
* *
76722921 CTGGTGGCTATGCCACAAATTATCTGTACTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTACTGGTGACCCTGCCACATATATCTGTAT
* * *
76722976 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTA-CTGGTGACCCTGCCACATATATCTGTAT
76723032 CTGG
1 CTGG
76723036 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 31 0.60
56 20 0.38
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTACTGGTGACCCTGCCACATATATCTGTAT
Found at i:76728708 original size:40 final size:39
Alignment explanation
Indices: 76728624--76728808 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
76728614 TCGAATGATG
* * * *
76728624 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
76728664 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76728704 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
76728743 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
76728784 -CCGAGCTATGTCTCGAAGGCATTTG
1 TCCGGGCTAAGTC-CGAAGGCATTTG
76728809 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76728760 original size:79 final size:80
Alignment explanation
Indices: 76728624--76728780 Score: 212
Period size: 79 Copynumber: 2.0 Consensus size: 80
76728614 TCGAATGATG
* *
76728624 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
76728689 GTGCGAGTTACTAAT
66 GTGCGAGTTACTAAT
* * * **
76728704 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
76728766 TTGTGCGAGTTACTA
64 TTGTGCGAGTTACTA
76728781 TAACCGAGCT
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 50 0.74
80 17 0.25
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAT
Found at i:76728830 original size:79 final size:79
Alignment explanation
Indices: 76728677--76728841 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
76728667 GGACTAAGAT
* * **
76728677 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
76728742 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
76728756 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGAGCTATGTCTCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
76728819 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
76728835 CCGAAGG
1 CCGAAGG
76728842 TACGTGATTC
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:76733348 original size:80 final size:81
Alignment explanation
Indices: 76733232--76733417 Score: 222
Period size: 80 Copynumber: 2.3 Consensus size: 81
76733222 AGTAACTCAT
* ** *
76733232 ACAATGCCTTCGGGACTTAACCCGG-ATTTTTAAACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 ACAAAGCCTTCGGGACTTAACCCGGAATTAATAAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
76733295 GGA-ATTAGT-A-TCTCGC
65 GGATA-TAGTCACT-TAGC
**
76733311 ACAAAGGCCTTCGGGACTTAACCCGGAATTAAT-AACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGAATTAATAAACTCGCACAAATGCCTTCGGATCTTAACCC
76733375 GGATATAGTCACTTAGC
65 GGATATAGTCACTTAGC
*
76733392 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
76733418 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 7 0.08
80 71 0.76
81 14 0.15
82 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (81 bp):
ACAAAGCCTTCGGGACTTAACCCGGAATTAATAAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTCACTTAGC
Found at i:76733377 original size:40 final size:40
Alignment explanation
Indices: 76733234--76733417 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
76733224 TAACTCATAC
** *
76733234 AATGCCTTCGGGACTTAACCCGG-ATTTTTAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGAATTAAT-AACTCGCACA
* *
76733274 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
76733314 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
76733354 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
76733395 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
76733418 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 5 0.04
40 104 0.84
41 15 0.12
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:76738230 original size:27 final size:27
Alignment explanation
Indices: 76738172--76738261 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
76738162 AGGAAGCGTC
*
76738172 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
76738200 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
76738227 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
76738256 CTGGTG
1 CTGGTG
76738262 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 22 0.41
28 25 0.46
29 7 0.13
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:76738272 original size:29 final size:28
Alignment explanation
Indices: 76738182--76738272 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
76738172 CTGGTGGCTA
* * * *
76738182 TGCCACAAATTATCTATTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
76738210 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
76738237 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
76738266 TGTCACA
1 TGCCACA
76738273 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 23 0.43
28 15 0.28
29 15 0.28
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:76738280 original size:55 final size:56
Alignment explanation
Indices: 76738172--76738286 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
76738162 AGGAAGCGTC
* *
76738172 CTGGTGGCTATGCCACAAATTATCTATTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
76738227 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTAT-TCTGGTGACCCTGCCACATATATCTGTAT
76738283 CTGG
1 CTGG
76738287 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTATTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:76738622 original size:23 final size:23
Alignment explanation
Indices: 76738592--76738638 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
76738582 TCAACCATAG
76738592 TAGGCTTGGAGCTGTGAGAGATT
1 TAGGCTTGGAGCTGTGAGAGATT
76738615 TAGGCTTGGAGCTGTGAGAGATT
1 TAGGCTTGGAGCTGTGAGAGATT
76738638 T
1 T
76738639 GGACTGGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.09, G:0.38, T:0.32
Consensus pattern (23 bp):
TAGGCTTGGAGCTGTGAGAGATT
Found at i:76740575 original size:419 final size:419
Alignment explanation
Indices: 76739797--76740638 Score: 1684
Period size: 419 Copynumber: 2.0 Consensus size: 419
76739787 TCAGTGTGTA
76739797 ATCAATTTTCACTAATCAAACAATCTATAGGAAAAGCGGTTTGGGCCTAAGCATGATTCAGTAAC
1 ATCAATTTTCACTAATCAAACAATCTATAGGAAAAGCGGTTTGGGCCTAAGCATGATTCAGTAAC
76739862 AGTCTAGTATCAGTGTGGCCCGTAGCCCATTTCAATAATAGTATCAGTGTGGGTCTTAACCCATT
66 AGTCTAGTATCAGTGTGGCCCGTAGCCCATTTCAATAATAGTATCAGTGTGGGTCTTAACCCATT
76739927 ACAGTAACAACAACAAAAATGCAACAAAAATCTTACCCATCCATCCTCTACACTCCACTCCGTCC
131 ACAGTAACAACAACAAAAATGCAACAAAAATCTTACCCATCCATCCTCTACACTCCACTCCGTCC
76739992 AACCCTACACTCCATGTGGGAATAAAATCGACCCACCCATACCTACACTCCAAATATAGCACTAG
196 AACCCTACACTCCATGTGGGAATAAAATCGACCCACCCATACCTACACTCCAAATATAGCACTAG
76740057 TTGCGGCGCTATTCAGTAATTGCAGCAATGATGCCAATACAGTACACTTCCTCCAATATATATAT
261 TTGCGGCGCTATTCAGTAATTGCAGCAATGATGCCAATACAGTACACTTCCTCCAATATATATAT
76740122 ATCAAACCCACCCCCATGCAACATGTCATGTCATAATATATACGTGTATGCAAAATGTCATGCTC
326 ATCAAACCCACCCCCATGCAACATGTCATGTCATAATATATACGTGTATGCAAAATGTCATGCTC
76740187 GAGTACGGTCAAGTATAGCATACGGGTAT
391 GAGTACGGTCAAGTATAGCATACGGGTAT
76740216 ATCAATTTTCACTAATCAAACAATCTATAGGAAAAGCGGTTTGGGCCTAAGCATGATTCAGTAAC
1 ATCAATTTTCACTAATCAAACAATCTATAGGAAAAGCGGTTTGGGCCTAAGCATGATTCAGTAAC
76740281 AGTCTAGTATCAGTGTGGCCCGTAGCCCATTTCAATAATAGTATCAGTGTGGGTCTTAACCCATT
66 AGTCTAGTATCAGTGTGGCCCGTAGCCCATTTCAATAATAGTATCAGTGTGGGTCTTAACCCATT
76740346 ACAGTAACAACAACAAAAATGCAACAAAAATCTTACCCATCCATCCTCTACACTCCACTCCGTCC
131 ACAGTAACAACAACAAAAATGCAACAAAAATCTTACCCATCCATCCTCTACACTCCACTCCGTCC
76740411 AACCCTACACTCCATGTGGGAATAAAATCGACCCACCCATACCTACACTCCAAATATAGCACTAG
196 AACCCTACACTCCATGTGGGAATAAAATCGACCCACCCATACCTACACTCCAAATATAGCACTAG
76740476 TTGCGGCGCTATTCAGTAATTGCAGCAATGATGCCAATACAGTACACTTCCTCCAATATATATAT
261 TTGCGGCGCTATTCAGTAATTGCAGCAATGATGCCAATACAGTACACTTCCTCCAATATATATAT
76740541 ATCAAACCCACCCCCATGCAACATGTCATGTCATAATATATACGTGTATGCAAAATGTCATGCTC
326 ATCAAACCCACCCCCATGCAACATGTCATGTCATAATATATACGTGTATGCAAAATGTCATGCTC
76740606 GAGTACGGTCAAGTATAGCATACGGGTAT
391 GAGTACGGTCAAGTATAGCATACGGGTAT
76740635 ATCA
1 ATCA
76740639 GTCATTTCAT
Statistics
Matches: 423, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
419 423 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26
Consensus pattern (419 bp):
ATCAATTTTCACTAATCAAACAATCTATAGGAAAAGCGGTTTGGGCCTAAGCATGATTCAGTAAC
AGTCTAGTATCAGTGTGGCCCGTAGCCCATTTCAATAATAGTATCAGTGTGGGTCTTAACCCATT
ACAGTAACAACAACAAAAATGCAACAAAAATCTTACCCATCCATCCTCTACACTCCACTCCGTCC
AACCCTACACTCCATGTGGGAATAAAATCGACCCACCCATACCTACACTCCAAATATAGCACTAG
TTGCGGCGCTATTCAGTAATTGCAGCAATGATGCCAATACAGTACACTTCCTCCAATATATATAT
ATCAAACCCACCCCCATGCAACATGTCATGTCATAATATATACGTGTATGCAAAATGTCATGCTC
GAGTACGGTCAAGTATAGCATACGGGTAT
Found at i:76753285 original size:79 final size:81
Alignment explanation
Indices: 76753141--76753359 Score: 240
Period size: 79 Copynumber: 2.8 Consensus size: 81
76753131 AAATCACGTA
* * * *
76753141 CCTTCGGAAT-TTAA-CCGGATATAGCT-CCTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTA
1 CCTTCGG-ATCTTAACCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATA
76753202 TAGTAAT-TCGCACAAATG
64 TAGT-ATCTCGCACAAATG
*
76753220 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAAT-T
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAT
76753282 AGTATCTCGCACAAATG
65 AGTATCTCGCACAAATG
** * * *
76753299 CCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAA
1 CCTTCGGATCTTAACCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGAA
76753360 ATCATTCAAA
Statistics
Matches: 120, Mismatches: 11, Indels: 17
0.81 0.07 0.11
Matches are distributed among these distances:
78 5 0.04
79 64 0.53
80 51 0.43
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATA
GTATCTCGCACAAATG
Found at i:76753358 original size:40 final size:40
Alignment explanation
Indices: 76753155--76753358 Score: 215
Period size: 40 Copynumber: 5.1 Consensus size: 40
76753145 CGGAATTTAA
* * *
76753155 CCGGATATAGCT-CCTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TACTTCGCACAAATGCCTTCGGGACTTAGC
* * *
76753195 CCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGC
*
76753235 CCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
*
76753274 CCGGA-ATTAGTA-TCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTACT-TCGCACAAATGCCTTCGGGA-CTTAGC
* *
76753314 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
76753354 CCGGA
1 CCGGA
76753359 AATCATTCAA
Statistics
Matches: 138, Mismatches: 15, Indels: 22
0.79 0.09 0.13
Matches are distributed among these distances:
38 3 0.02
39 31 0.22
40 89 0.64
41 14 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGC
Found at i:76767952 original size:151 final size:151
Alignment explanation
Indices: 76767678--76767980 Score: 606
Period size: 151 Copynumber: 2.0 Consensus size: 151
76767668 CATCATCAAG
76767678 ACTAAAGATCTCTCCTCAATTTCTCTTCAGGAGTTGTGGATTTTCATTATGTTTTGTATTCTTTA
1 ACTAAAGATCTCTCCTCAATTTCTCTTCAGGAGTTGTGGATTTTCATTATGTTTTGTATTCTTTA
76767743 TTCTTCTAAGATGTTTTCTTATTTAGTTATGAACTAAATCCCCTAAATACCTAAGGGGAATGAAA
66 TTCTTCTAAGATGTTTTCTTATTTAGTTATGAACTAAATCCCCTAAATACCTAAGGGGAATGAAA
76767808 CCTAAGATAAATCTTGTTATT
131 CCTAAGATAAATCTTGTTATT
76767829 ACTAAAGATCTCTCCTCAATTTCTCTTCAGGAGTTGTGGATTTTCATTATGTTTTGTATTCTTTA
1 ACTAAAGATCTCTCCTCAATTTCTCTTCAGGAGTTGTGGATTTTCATTATGTTTTGTATTCTTTA
76767894 TTCTTCTAAGATGTTTTCTTATTTAGTTATGAACTAAATCCCCTAAATACCTAAGGGGAATGAAA
66 TTCTTCTAAGATGTTTTCTTATTTAGTTATGAACTAAATCCCCTAAATACCTAAGGGGAATGAAA
76767959 CCTAAGATAAATCTTGTTATT
131 CCTAAGATAAATCTTGTTATT
76767980 A
1 A
76767981 TTTTCTGAAT
Statistics
Matches: 152, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
151 152 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (151 bp):
ACTAAAGATCTCTCCTCAATTTCTCTTCAGGAGTTGTGGATTTTCATTATGTTTTGTATTCTTTA
TTCTTCTAAGATGTTTTCTTATTTAGTTATGAACTAAATCCCCTAAATACCTAAGGGGAATGAAA
CCTAAGATAAATCTTGTTATT
Found at i:76771526 original size:61 final size:61
Alignment explanation
Indices: 76771451--76771572 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
76771441 AGATTGATAG
*
76771451 CAGGACTGAGGAGTATAAACTCCTCAAACCACCATGACCATTCACTGAAGAGGTAAGTCGA
1 CAGGAATGAGGAGTATAAACTCCTCAAACCACCATGACCATTCACTGAAGAGGTAAGTCGA
76771512 CAGGAATGAGGAGTATAAACTCCTCAAACCACCATGACCATTCACTGAAGAGGTAAGTCGA
1 CAGGAATGAGGAGTATAAACTCCTCAAACCACCATGACCATTCACTGAAGAGGTAAGTCGA
76771573 GCTTAGACTA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.37, C:0.24, G:0.21, T:0.18
Consensus pattern (61 bp):
CAGGAATGAGGAGTATAAACTCCTCAAACCACCATGACCATTCACTGAAGAGGTAAGTCGA
Found at i:76772174 original size:18 final size:18
Alignment explanation
Indices: 76772153--76772191 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
76772143 TTTTATTAAG
76772153 TTTTTAAGACTT-ATTTG-
1 TTTTTAAGA-TTCATTTGC
76772170 TTTTTAAGATTCATTTGC
1 TTTTTAAGATTCATTTGC
76772188 TTTT
1 TTTT
76772192 CTTTTCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 2 0.10
17 14 0.70
18 4 0.20
ACGTcount: A:0.21, C:0.08, G:0.10, T:0.62
Consensus pattern (18 bp):
TTTTTAAGATTCATTTGC
Found at i:76775478 original size:19 final size:19
Alignment explanation
Indices: 76775454--76775492 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
76775444 CAACTGATAG
*
76775454 TAGCCTGATCTCAAATCTA
1 TAGCCTAATCTCAAATCTA
*
76775473 TAGCCTAATCTTAAATCTA
1 TAGCCTAATCTCAAATCTA
76775492 T
1 T
76775493 CTTCGAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (19 bp):
TAGCCTAATCTCAAATCTA
Found at i:76784445 original size:69 final size:69
Alignment explanation
Indices: 76784334--76784472 Score: 278
Period size: 69 Copynumber: 2.0 Consensus size: 69
76784324 TCTATTTAAT
76784334 AGTATATACTATAATTTGTTAATACCTCGTACCCTGTTCCGGCGACGGATACGGGTAAGGGGTGT
1 AGTATATACTATAATTTGTTAATACCTCGTACCCTGTTCCGGCGACGGATACGGGTAAGGGGTGT
76784399 TACA
66 TACA
76784403 AGTATATACTATAATTTGTTAATACCTCGTACCCTGTTCCGGCGACGGATACGGGTAAGGGGTGT
1 AGTATATACTATAATTTGTTAATACCTCGTACCCTGTTCCGGCGACGGATACGGGTAAGGGGTGT
76784468 TACA
66 TACA
76784472 A
1 A
76784473 AGGATGTGGA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (69 bp):
AGTATATACTATAATTTGTTAATACCTCGTACCCTGTTCCGGCGACGGATACGGGTAAGGGGTGT
TACA
Found at i:76789917 original size:13 final size:13
Alignment explanation
Indices: 76789899--76789927 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
76789889 TATACATTTG
76789899 TATACAATTATAT
1 TATACAATTATAT
76789912 TATACAATTATAT
1 TATACAATTATAT
76789925 TAT
1 TAT
76789928 CACTTTAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (13 bp):
TATACAATTATAT
Found at i:76790645 original size:61 final size:61
Alignment explanation
Indices: 76790550--76790664 Score: 194
Period size: 61 Copynumber: 1.9 Consensus size: 61
76790540 TCGGACGTTG
* *
76790550 TAAAACGGGACGGGGCTACTAGTCGACAACTTTCGTCTTTCTCTAGTCCAAATCGATGTCA
1 TAAAACGGGACGGGGATACTAGTCGACAACTTTCGTCTTTCCCTAGTCCAAATCGATGTCA
* *
76790611 TAAAACGGGACGGGGATGCTAGTCGTCAACTTTCGTCTTTCCCTAGTCCAAATC
1 TAAAACGGGACGGGGATACTAGTCGACAACTTTCGTCTTTCCCTAGTCCAAATC
76790665 CGATTTCTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 50 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (61 bp):
TAAAACGGGACGGGGATACTAGTCGACAACTTTCGTCTTTCCCTAGTCCAAATCGATGTCA
Found at i:76793277 original size:182 final size:183
Alignment explanation
Indices: 76792962--76793318 Score: 691
Period size: 182 Copynumber: 2.0 Consensus size: 183
76792952 CCCTTATGTA
76792962 CATACACAAAAGATCAACTCAGCCAAAGGCTGGTAGCTCGTTTATCAACTGAGCGAATACTTATT
1 CATACACAAAAGATCAACTCAGCCAAAGGCTGGTAGCTCGTTTATCAACTGAGCGAATACTTATT
76793027 TGTAAGGGCTCAACTAAATTCAAGCACATACGAAACATACCTCAATGTTGGATGTTTCGAGAGTA
66 TGTAAGGGCTCAACTAAATTCAAGCACATACGAAACATACCTCAATGTTGGATGTTTCGAGAGTA
76793092 TTAACTGGAATTTTACAGCAAGTTCATTCATTCCCAAATCACGTATTTTTATT
131 TTAACTGGAATTTTACAGCAAGTTCATTCATTCCCAAATCACGTATTTTTATT
76793145 CATACAC-AAAGATCAAC-CTAGCCAAAGGCTGGTAGCTCGTTTATCAACTGAGCGAATACTTAT
1 CATACACAAAAGATCAACTC-AGCCAAAGGCTGGTAGCTCGTTTATCAACTGAGCGAATACTTAT
76793208 TTGTAAGGGCTCAACTAAATTCAAGCACATACGAAACATACCTCAATGTTGGATGTTTCGAGAGT
65 TTGTAAGGGCTCAACTAAATTCAAGCACATACGAAACATACCTCAATGTTGGATGTTTCGAGAGT
76793273 ATTAACTGGAATTTTACAGCAAGTTCATTCATTCCCAAATCACGTA
130 ATTAACTGGAATTTTACAGCAAGTTCATTCATTCCCAAATCACGTA
76793319 CCTTCGAAAT
Statistics
Matches: 173, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
181 1 0.01
182 165 0.95
183 7 0.04
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (183 bp):
CATACACAAAAGATCAACTCAGCCAAAGGCTGGTAGCTCGTTTATCAACTGAGCGAATACTTATT
TGTAAGGGCTCAACTAAATTCAAGCACATACGAAACATACCTCAATGTTGGATGTTTCGAGAGTA
TTAACTGGAATTTTACAGCAAGTTCATTCATTCCCAAATCACGTATTTTTATT
Found at i:76793469 original size:39 final size:40
Alignment explanation
Indices: 76793352--76793535 Score: 177
Period size: 40 Copynumber: 4.7 Consensus size: 40
76793342 GCTCCTCGTT
*
76793352 CAAATGCCTTAGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTAGGGACTTAGCCCGGATT-TAGT-ATCTCGCA
* *
76793392 CAAATGCCTTAGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTAGGGACTTAGCCCGGATTTAGTATCTCGCA
* *
76793432 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTAGGGACTTAGCCCGGATTTAGTATCTCGCA
* * *
76793471 CAAATGCCTT-CGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTAGGGA-CTTAGCCCGGAT-TTAGT-ATC-TCGCA
*
76793512 C-AA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTAGGGACTTAGCCCGGA
76793536 CATCATTCAA
Statistics
Matches: 123, Mismatches: 13, Indels: 17
0.80 0.08 0.11
Matches are distributed among these distances:
38 2 0.02
39 48 0.39
40 63 0.51
41 10 0.08
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTAGGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:76793496 original size:79 final size:82
Alignment explanation
Indices: 76793352--76793535 Score: 197
Period size: 79 Copynumber: 2.3 Consensus size: 82
76793342 GCTCCTCGTT
* * *
76793352 CAAATGCCTTAGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTAGGGACTTAACCCG
1 CAAATGCCTTAGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTACGGACTTAACCCG
*
76793416 GAT-TTAGTAAC-TCGCA
66 GATATT-GTAACTTAGCA
* **
76793432 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTT-CGGATCTTAGTC
1 CAAATGCCTTAGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTACGGA-CTTAACC
*
76793493 CGGATATTGTCACTTAGCA
64 CGGATATTGTAACTTAGCA
*
76793512 C-AA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTAGGGACTTAGCCCGGA
76793536 CATCATTCAA
Statistics
Matches: 89, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
78 13 0.15
79 55 0.62
80 21 0.24
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTAGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTACGGACTTAACCCG
GATATTGTAACTTAGCA
Found at i:76797321 original size:18 final size:18
Alignment explanation
Indices: 76797300--76797350 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 18
76797290 AAAACATTCA
76797300 CTTTCTCACATTCTTTTT
1 CTTTCTCACATTCTTTTT
76797318 CTTTCT--C-TTCTTTTT
1 CTTTCTCACATTCTTTTT
76797333 CTTTTCTCA-ATTTCTTTT
1 C-TTTCTCACA-TTCTTTT
76797351 CACTTTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
15 9 0.32
16 6 0.21
18 6 0.21
19 7 0.25
ACGTcount: A:0.08, C:0.25, G:0.00, T:0.67
Consensus pattern (18 bp):
CTTTCTCACATTCTTTTT
Found at i:76800997 original size:15 final size:16
Alignment explanation
Indices: 76800977--76801008 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
76800967 AAAACTATTT
76800977 TATTACA-AATTTCAC
1 TATTACATAATTTCAC
76800992 TATTACATAATTTCAC
1 TATTACATAATTTCAC
76801008 T
1 T
76801009 TACTCCATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.44
Consensus pattern (16 bp):
TATTACATAATTTCAC
Found at i:76803686 original size:10 final size:10
Alignment explanation
Indices: 76803671--76803696 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
76803661 GAAGTAGAGA
76803671 TGAGCTTAAT
1 TGAGCTTAAT
76803681 TGAGCTTAAT
1 TGAGCTTAAT
76803691 TGAGCT
1 TGAGCT
76803697 GAACTAAGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (10 bp):
TGAGCTTAAT
Found at i:76805113 original size:56 final size:57
Alignment explanation
Indices: 76805046--76805181 Score: 174
Period size: 56 Copynumber: 2.4 Consensus size: 57
76805036 ACCATGTCAT
* * *
76805046 CGATATATGTGTATG-A-GTAGGACCACGTTTTATACATTGGTATCGATATGTGACTC
1 CGATATATGTGT-TGCATGTAAGACCACATTTTATACATTGGCATCGATATGTGACTC
* *
76805102 CGATATATGTG-TGCATGTAAGACCATATTTTATACGTTGGCATCGATATGTGACTC
1 CGATATATGTGTTGCATGTAAGACCACATTTTATACATTGGCATCGATATGTGACTC
76805158 CGATATATGTG-TGCGA-GTAAGACC
1 CGATATATGTGTTGC-ATGTAAGACC
76805182 CTGTCTGGGA
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
54 2 0.03
55 1 0.01
56 68 0.94
57 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (57 bp):
CGATATATGTGTTGCATGTAAGACCACATTTTATACATTGGCATCGATATGTGACTC
Found at i:76805199 original size:56 final size:56
Alignment explanation
Indices: 76805082--76805210 Score: 163
Period size: 56 Copynumber: 2.3 Consensus size: 56
76805072 GTTTTATACA
* * * *
76805082 TTGGTATCGATATGTGACTCCGATATATGTGTGCATGTAAGACCATATTTTATACG
1 TTGGCATCGATATGTGACTCCGATATATGTGTGCATGTAAGACCATATCTGAGACG
* * *
76805138 TTGGCATCGATATGTGACTCCGATATATGTGTGCGA-GTAAGACCCTGTCTGGGACAG
1 TTGGCATCGATATGTGACTCCGATATATGTGTGC-ATGTAAGACCATATCTGAGAC-G
76805195 -TGGCATCGATATGTGA
1 TTGGCATCGATATGTGA
76805211 TTACATGTAA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
56 62 0.97
57 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (56 bp):
TTGGCATCGATATGTGACTCCGATATATGTGTGCATGTAAGACCATATCTGAGACG
Found at i:76809322 original size:29 final size:29
Alignment explanation
Indices: 76809289--76809347 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
76809279 TATATGTGTG
76809289 AATTATCGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
76809318 AATTATCGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
76809347 A
1 A
76809348 TGCATTGTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCGAAGTAA
Found at i:76809404 original size:27 final size:27
Alignment explanation
Indices: 76809374--76809468 Score: 108
Period size: 27 Copynumber: 3.6 Consensus size: 27
76809364 TAATAGCACT
76809374 AAAGTGTGCAAATACAAGAAGTGATCG
1 AAAGTGTGCAAATACAAGAAGTGATCG
* ** *
76809401 AAAGTG-G-ACGA-ACGTGAAATGTAT-G
1 AAAGTGTGCA-AATACAAGAAGTG-ATCG
76809426 AAAGTGTGCAAATACAAGAAGTGATCG
1 AAAGTGTGCAAATACAAGAAGTGATCG
76809453 AAAGTGTGCAAATACA
1 AAAGTGTGCAAATACA
76809469 TTAAATTCGT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
25 15 0.28
26 8 0.15
27 31 0.57
ACGTcount: A:0.44, C:0.11, G:0.26, T:0.19
Consensus pattern (27 bp):
AAAGTGTGCAAATACAAGAAGTGATCG
Found at i:76811749 original size:17 final size:19
Alignment explanation
Indices: 76811727--76811763 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
76811717 CACATTGAAG
76811727 TGTTTT-ATCGAAAA-CCT
1 TGTTTTCATCGAAAAGCCT
*
76811744 TGTTTTCATTGAAAAGCCT
1 TGTTTTCATCGAAAAGCCT
76811763 T
1 T
76811764 CTTTGAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 7 0.41
19 4 0.24
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (19 bp):
TGTTTTCATCGAAAAGCCT
Found at i:76813056 original size:28 final size:28
Alignment explanation
Indices: 76813014--76813112 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
76813004 TGGCCCCTTT
*
76813014 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
76813042 GGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
76813070 AGGCCCAATCACTTTCATATGGTCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
76813098 AGACCCAATCACATT
1 AGGCCCAATCACATT
76813113 TATAGTCATG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.26, C:0.34, G:0.15, T:0.24
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:76819301 original size:27 final size:27
Alignment explanation
Indices: 76819271--76819322 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
76819261 AACCAAAACA
76819271 CCCCTAAAGGGTAAAATGACT-ATTTTG
1 CCCCTAAAGGGT-AAATGACTGATTTTG
**
76819298 CCCCTCGAGGGTAAATGACTGATTT
1 CCCCTAAAGGGTAAATGACTGATTT
76819323 GTTTGTGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (27 bp):
CCCCTAAAGGGTAAATGACTGATTTTG
Found at i:76819633 original size:32 final size:32
Alignment explanation
Indices: 76819592--76819681 Score: 135
Period size: 32 Copynumber: 2.8 Consensus size: 32
76819582 TTTGATATTG
*
76819592 ATATGGGCTAGGCCCAATTGATATTGGTTCTA
1 ATATGGGCTAGGCCCAATTGATATTGATTCTA
* * *
76819624 ATATGGGCTAGGTCCAACTGATATTGATTCTG
1 ATATGGGCTAGGCCCAATTGATATTGATTCTA
*
76819656 AGATGGGCTAGGCCCAATTGATATTG
1 ATATGGGCTAGGCCCAATTGATATTG
76819682 TGATGGGTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.32
Consensus pattern (32 bp):
ATATGGGCTAGGCCCAATTGATATTGATTCTA
Found at i:76820653 original size:30 final size:30
Alignment explanation
Indices: 76820619--76820679 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
76820609 TTGTGAGACT
76820619 TAGTTGATATACCCGAGAGTGTGTTTCGAC
1 TAGTTGATATACCCGAGAGTGTGTTTCGAC
*
76820649 TAGTTGATATGCCCGAGAGTGTGTTTCGAC
1 TAGTTGATATACCCGAGAGTGTGTTTCGAC
76820679 T
1 T
76820680 GAAGCTATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.34
Consensus pattern (30 bp):
TAGTTGATATACCCGAGAGTGTGTTTCGAC
Found at i:76820826 original size:17 final size:18
Alignment explanation
Indices: 76820804--76820839 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
76820794 CACATTGAAG
76820804 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
76820821 TGTTTTCATTGAAAACCT
1 TGTTTTCATCGAAAACCT
76820839 T
1 T
76820840 TCCTTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:76832044 original size:46 final size:46
Alignment explanation
Indices: 76831989--76832201 Score: 176
Period size: 46 Copynumber: 4.7 Consensus size: 46
76831979 TGAGCATCCG
76831989 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACACCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACACCCA
* * * ** * * * *
76832035 AACTTGTTGAGTTCGAGTTC--G-TGAGATGTGG-T-TGAGCATCCG
1 AACTCGTTGAGTT-GAGTCCGAGTTCACTTATGGATGTGAACACCCA
* * *
76832077 AACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATGT-AACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC-A--C--CCA
76832123 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACACCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACACCCA
* *
76832169 AACTTGTTGAGTTGAGTCCGAGTTTACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76832202 GCAGGTTACA
Statistics
Matches: 130, Mismatches: 21, Indels: 32
0.71 0.11 0.17
Matches are distributed among these distances:
40 2 0.02
41 7 0.05
42 23 0.18
43 2 0.02
44 6 0.05
45 1 0.01
46 65 0.50
47 12 0.09
48 3 0.02
50 6 0.05
51 3 0.02
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACACCCA
Found at i:76835934 original size:29 final size:29
Alignment explanation
Indices: 76835873--76835954 Score: 112
Period size: 29 Copynumber: 2.9 Consensus size: 29
76835863 ACATACATAT
* *
76835873 ATATGGCCCACTAGGCCC-AATCTCATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
76835901 ATATGGCCCATTGGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
76835930 GTATGGCCTATTAGGCCCAAATCAC
1 ATATGGCCCATTAGGCCCAAATCAC
76835955 TTACATAGCC
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 16 0.34
29 31 0.66
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:76842807 original size:40 final size:40
Alignment explanation
Indices: 76842616--76842800 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
76842606 TTGAATGATG
* * * * *
76842616 TCCGTGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
76842656 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
76842696 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
76842735 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
76842776 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76842801 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76842822 original size:79 final size:79
Alignment explanation
Indices: 76842669--76842833 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
76842659 AGACTAAGAT
* * **
76842669 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
76842734 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
76842748 CCGAAGGCAATTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
76842811 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
76842827 CCGAAGG
1 CCGAAGG
76842834 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:76844276 original size:122 final size:123
Alignment explanation
Indices: 76844058--76844294 Score: 449
Period size: 122 Copynumber: 1.9 Consensus size: 123
76844048 CTACTATTAC
76844058 GCAGATTGGCAGTGTCTGGAAAATTTTTTTTAAAAAGTCTGTTAACACCTCGTGTTCGACTCCGG
1 GCAGATTGGCAGTGTCTGGAAAATTTTTTTTAAAAAGTCTGTTAACACCTCGTGTTCGACTCCGG
76844123 TGACGGTCTCGGGTTTGGGGTGTTACATTTGATTGGTATCAGAGCTACGGACTAGTAT
66 TGACGGTCTCGGGTTTGGGGTGTTACATTTGATTGGTATCAGAGCTACGGACTAGTAT
* *
76844181 GCAGATTGGCAGTGTCTGGGAAATTTTTTTT-TAAAGTCTGTTAACACCTCGTGTTCGACTCCGG
1 GCAGATTGGCAGTGTCTGGAAAATTTTTTTTAAAAAGTCTGTTAACACCTCGTGTTCGACTCCGG
76844245 TGACGGTCTCGGGTTTGGGGTGTTACATTTGATTGGTATCAGAGCTACGG
66 TGACGGTCTCGGGTTTGGGGTGTTACATTTGATTGGTATCAGAGCTACGG
76844295 TTTAGTCGAT
Statistics
Matches: 112, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
122 82 0.73
123 30 0.27
ACGTcount: A:0.20, C:0.16, G:0.29, T:0.35
Consensus pattern (123 bp):
GCAGATTGGCAGTGTCTGGAAAATTTTTTTTAAAAAGTCTGTTAACACCTCGTGTTCGACTCCGG
TGACGGTCTCGGGTTTGGGGTGTTACATTTGATTGGTATCAGAGCTACGGACTAGTAT
Found at i:76855505 original size:17 final size:17
Alignment explanation
Indices: 76855483--76855518 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
76855473 AGTAATTAAT
*
76855483 AAGTTATAATATACTAA
1 AAGTTATAATATAATAA
76855500 AAGTTATAATATAATAA
1 AAGTTATAATATAATAA
76855517 AA
1 AA
76855519 CATACAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (17 bp):
AAGTTATAATATAATAA
Found at i:76859831 original size:17 final size:16
Alignment explanation
Indices: 76859809--76859854 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
76859799 TTTTTCAATT
76859809 TTCTTTTTCTTCTCACA
1 TTCTTTTTCTTCTC-CA
*
76859826 TTCTTTTTCACTCTCCA
1 TTCTTTTTC-TTCTCCA
76859843 TCTCTTTTTCTT
1 T-TCTTTTTCTT
76859855 TTTCCTTCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.09, C:0.30, G:0.00, T:0.61
Consensus pattern (16 bp):
TTCTTTTTCTTCTCCA
Found at i:76859854 original size:6 final size:6
Alignment explanation
Indices: 76859845--76859908 Score: 65
Period size: 6 Copynumber: 10.5 Consensus size: 6
76859835 ACTCTCCATC
* * ** **
76859845 TCTTTT TCTTTT TCCTTC TCTTTT TCTTTT TCACTT TCTTTT TCAATT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
76859893 TCATTTT TCTTTT TCT
1 TC-TTTT TCTTTT TCT
76859909 CATTCTCTTT
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
6 41 0.91
7 4 0.09
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (6 bp):
TCTTTT
Found at i:76859864 original size:18 final size:19
Alignment explanation
Indices: 76859795--76859908 Score: 85
Period size: 18 Copynumber: 6.3 Consensus size: 19
76859785 TCAGACTCAA
* *
76859795 TTTCTTTTTCAATTTTCTT
1 TTTCTTTTTCACTTCTCTT
* *
76859814 TTTC-TTCTCACAT-TCTT
1 TTTCTTTTTCACTTCTCTT
** * *
76859831 TTTCACTCTC-CATCTCTT
1 TTTCTTTTTCACTTCTCTT
76859849 TTTCTTTTTC-CTTCTCTT
1 TTTCTTTTTCACTTCTCTT
76859867 TTTCTTTTTCACTT-TCTT
1 TTTCTTTTTCACTTCTCTT
** * *
76859885 TTTCAATTTCATTTTTCTT
1 TTTCTTTTTCACTTCTCTT
76859904 TTTCT
1 TTTCT
76859909 CATTCTCTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
17 11 0.14
18 53 0.67
19 15 0.19
ACGTcount: A:0.09, C:0.25, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTCTTTTTCACTTCTCTT
Found at i:76860854 original size:18 final size:18
Alignment explanation
Indices: 76860831--76860875 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
76860821 TCACTTCTCT
76860831 CTTTTTTTTATACTAAAA
1 CTTTTTTTTATACTAAAA
* **
76860849 CTTTTTTTTATATTCGAA
1 CTTTTTTTTATACTAAAA
76860867 CTTTTTTTT
1 CTTTTTTTT
76860876 TAATTTTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.22, C:0.11, G:0.02, T:0.64
Consensus pattern (18 bp):
CTTTTTTTTATACTAAAA
Found at i:76864285 original size:17 final size:16
Alignment explanation
Indices: 76864263--76864308 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
76864253 TTTTTCAATT
76864263 TTCTTTTTCTTCTCACA
1 TTCTTTTTCTTCTC-CA
*
76864280 TTCTTTTTCACTCTCCA
1 TTCTTTTTC-TTCTCCA
76864297 TCTCTTTTTCTT
1 T-TCTTTTTCTT
76864309 TTTCCTTCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.09, C:0.30, G:0.00, T:0.61
Consensus pattern (16 bp):
TTCTTTTTCTTCTCCA
Found at i:76864308 original size:6 final size:6
Alignment explanation
Indices: 76864299--76864362 Score: 65
Period size: 6 Copynumber: 10.5 Consensus size: 6
76864289 ACTCTCCATC
* * ** **
76864299 TCTTTT TCTTTT TCCTTC TCTTTT TCTTTT TCACTT TCTTTT TCAATT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
76864347 TCATTTT TCTTTT TCT
1 TC-TTTT TCTTTT TCT
76864363 CATTCTCTTT
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
6 41 0.91
7 4 0.09
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (6 bp):
TCTTTT
Found at i:76864318 original size:18 final size:19
Alignment explanation
Indices: 76864249--76864362 Score: 85
Period size: 18 Copynumber: 6.3 Consensus size: 19
76864239 TCAGACTCAA
* *
76864249 TTTCTTTTTCAATTTTCTT
1 TTTCTTTTTCACTTCTCTT
* *
76864268 TTTC-TTCTCACAT-TCTT
1 TTTCTTTTTCACTTCTCTT
** * *
76864285 TTTCACTCTC-CATCTCTT
1 TTTCTTTTTCACTTCTCTT
76864303 TTTCTTTTTC-CTTCTCTT
1 TTTCTTTTTCACTTCTCTT
76864321 TTTCTTTTTCACTT-TCTT
1 TTTCTTTTTCACTTCTCTT
** * *
76864339 TTTCAATTTCATTTTTCTT
1 TTTCTTTTTCACTTCTCTT
76864358 TTTCT
1 TTTCT
76864363 CATTCTCTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
17 11 0.14
18 53 0.67
19 15 0.19
ACGTcount: A:0.09, C:0.25, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTCTTTTTCACTTCTCTT
Found at i:76865308 original size:18 final size:18
Alignment explanation
Indices: 76865285--76865329 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
76865275 TCACTTCTCT
76865285 CTTTTTTTTATACTAAAA
1 CTTTTTTTTATACTAAAA
* **
76865303 CTTTTTTTTATATTCGAA
1 CTTTTTTTTATACTAAAA
76865321 CTTTTTTTT
1 CTTTTTTTT
76865330 TAATTTTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.22, C:0.11, G:0.02, T:0.64
Consensus pattern (18 bp):
CTTTTTTTTATACTAAAA
Found at i:76868739 original size:17 final size:16
Alignment explanation
Indices: 76868717--76868762 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
76868707 TTTTTCAATT
76868717 TTCTTTTTCTTCTCACA
1 TTCTTTTTCTTCTC-CA
*
76868734 TTCTTTTTCACTCTCCA
1 TTCTTTTTC-TTCTCCA
76868751 TCTCTTTTTCTT
1 T-TCTTTTTCTT
76868763 TTTCCTTCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.09, C:0.30, G:0.00, T:0.61
Consensus pattern (16 bp):
TTCTTTTTCTTCTCCA
Found at i:76868762 original size:6 final size:6
Alignment explanation
Indices: 76868753--76868816 Score: 65
Period size: 6 Copynumber: 10.5 Consensus size: 6
76868743 ACTCTCCATC
* * ** **
76868753 TCTTTT TCTTTT TCCTTC TCTTTT TCTTTT TCACTT TCTTTT TCAATT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
76868801 TCATTTT TCTTTT TCT
1 TC-TTTT TCTTTT TCT
76868817 CATTCTCTTT
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
6 41 0.91
7 4 0.09
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (6 bp):
TCTTTT
Found at i:76868772 original size:18 final size:19
Alignment explanation
Indices: 76868703--76868816 Score: 85
Period size: 18 Copynumber: 6.3 Consensus size: 19
76868693 TCAGACTCAA
* *
76868703 TTTCTTTTTCAATTTTCTT
1 TTTCTTTTTCACTTCTCTT
* *
76868722 TTTC-TTCTCACAT-TCTT
1 TTTCTTTTTCACTTCTCTT
** * *
76868739 TTTCACTCTC-CATCTCTT
1 TTTCTTTTTCACTTCTCTT
76868757 TTTCTTTTTC-CTTCTCTT
1 TTTCTTTTTCACTTCTCTT
76868775 TTTCTTTTTCACTT-TCTT
1 TTTCTTTTTCACTTCTCTT
** * *
76868793 TTTCAATTTCATTTTTCTT
1 TTTCTTTTTCACTTCTCTT
76868812 TTTCT
1 TTTCT
76868817 CATTCTCTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
17 11 0.14
18 53 0.67
19 15 0.19
ACGTcount: A:0.09, C:0.25, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTCTTTTTCACTTCTCTT
Found at i:76869762 original size:18 final size:18
Alignment explanation
Indices: 76869739--76869783 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
76869729 TCACTTCTCT
76869739 CTTTTTTTTATACTAAAA
1 CTTTTTTTTATACTAAAA
* **
76869757 CTTTTTTTTATATTCGAA
1 CTTTTTTTTATACTAAAA
76869775 CTTTTTTTT
1 CTTTTTTTT
76869784 TAATTTTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.22, C:0.11, G:0.02, T:0.64
Consensus pattern (18 bp):
CTTTTTTTTATACTAAAA
Found at i:76873193 original size:17 final size:16
Alignment explanation
Indices: 76873171--76873216 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
76873161 TTTTTCAATT
76873171 TTCTTTTTCTTCTCACA
1 TTCTTTTTCTTCTC-CA
*
76873188 TTCTTTTTCACTCTCCA
1 TTCTTTTTC-TTCTCCA
76873205 TCTCTTTTTCTT
1 T-TCTTTTTCTT
76873217 TTTCCTTCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.09, C:0.30, G:0.00, T:0.61
Consensus pattern (16 bp):
TTCTTTTTCTTCTCCA
Found at i:76873216 original size:6 final size:6
Alignment explanation
Indices: 76873207--76873270 Score: 65
Period size: 6 Copynumber: 10.5 Consensus size: 6
76873197 ACTCTCCATC
* * ** **
76873207 TCTTTT TCTTTT TCCTTC TCTTTT TCTTTT TCACTT TCTTTT TCAATT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT
76873255 TCATTTT TCTTTT TCT
1 TC-TTTT TCTTTT TCT
76873271 CATTCTCTTT
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
6 41 0.91
7 4 0.09
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (6 bp):
TCTTTT
Found at i:76873226 original size:18 final size:19
Alignment explanation
Indices: 76873157--76873270 Score: 85
Period size: 18 Copynumber: 6.3 Consensus size: 19
76873147 TCAGACTCAA
* *
76873157 TTTCTTTTTCAATTTTCTT
1 TTTCTTTTTCACTTCTCTT
* *
76873176 TTTC-TTCTCACAT-TCTT
1 TTTCTTTTTCACTTCTCTT
** * *
76873193 TTTCACTCTC-CATCTCTT
1 TTTCTTTTTCACTTCTCTT
76873211 TTTCTTTTTC-CTTCTCTT
1 TTTCTTTTTCACTTCTCTT
76873229 TTTCTTTTTCACTT-TCTT
1 TTTCTTTTTCACTTCTCTT
** * *
76873247 TTTCAATTTCATTTTTCTT
1 TTTCTTTTTCACTTCTCTT
76873266 TTTCT
1 TTTCT
76873271 CATTCTCTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
17 11 0.14
18 53 0.67
19 15 0.19
ACGTcount: A:0.09, C:0.25, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTCTTTTTCACTTCTCTT
Found at i:76874216 original size:18 final size:18
Alignment explanation
Indices: 76874193--76874237 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
76874183 TCACTTCTCT
76874193 CTTTTTTTTATACTAAAA
1 CTTTTTTTTATACTAAAA
* **
76874211 CTTTTTTTTATATTCGAA
1 CTTTTTTTTATACTAAAA
76874229 CTTTTTTTT
1 CTTTTTTTT
76874238 TAATTTTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.22, C:0.11, G:0.02, T:0.64
Consensus pattern (18 bp):
CTTTTTTTTATACTAAAA
Found at i:76876639 original size:56 final size:56
Alignment explanation
Indices: 76876578--76876711 Score: 196
Period size: 56 Copynumber: 2.4 Consensus size: 56
76876568 CATGGCATCG
* ** * *
76876578 ATATATGTGAGCGAGTAAGACCATGTTTTATATGTTGGTATCAATATATGACTCTA
1 ATATATGTGTGCGAGTAAGACCACATTTTATATGTTGGCATCAATATATGACTCCA
* * *
76876634 ATATATGTGTGCGAGTAAGACCACATTTTATATGTTGGCATCGATATGTGACTCCG
1 ATATATGTGTGCGAGTAAGACCACATTTTATATGTTGGCATCAATATATGACTCCA
76876690 ATATATGTGTGCGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
76876712 CTGTCTGGGA
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 70 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACATTTTATATGTTGGCATCAATATATGACTCCA
Found at i:76884087 original size:40 final size:40
Alignment explanation
Indices: 76884005--76884189 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
76883995 TTGAATGATG
* * * *
76884005 TCCGGGCT-AGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
76884044 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
76884084 TCCGGGTTCAGTCTCGAAGGCATTTCTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
76884124 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
76884165 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76884190 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
39 8 0.06
40 108 0.86
41 10 0.08
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:76884196 original size:80 final size:79
Alignment explanation
Indices: 76884057--76884222 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 79
76884047 GGACTAAGAT
* * **
76884057 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTCAGTCTCGAAGGCATTTCTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTCAGTCCCGAAGGCATTTCAACGAG-TAGCT
*
76884121 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
76884137 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCT-ATGTCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTCA-GTCCCGAAGGCATTTCAACGAGTAGC
* *
76884200 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
76884216 CCGAAGG
1 CCGAAGG
76884223 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
79 17 0.23
80 56 0.75
81 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTCAGTCCCGAAGGCATTTCAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:76887568 original size:138 final size:138
Alignment explanation
Indices: 76887261--76887783 Score: 708
Period size: 138 Copynumber: 3.8 Consensus size: 138
76887251 GAGAATATAG
* * * *
76887261 ATATAATTAATATATGAATTTGATTCATACTAAATATTAATTCTATTTATTTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATCCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * * * * *
76887326 AATATAAATACTTATATTTATTAATTTCGATAAAAAATATAAAAGACATGGAAATTAATTTTATT
66 AATATAAATAATTATATTAATTAATTTCGGT-CAAAATATAAAAGACATGGAAATTAATATTCTT
*
76887391 TTGGAAACA
130 TTGGAAAAA
* * *
76887400 ATATAATTAATATATGAATTTGATTCATACAAAATATTACTTGTATATATTTTACCGATTTTATT
1 ATATAATTAATATATGAATTTGATCCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * * * *
76887465 AATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAACGACATTGAAGTTAATGTTCTTT
66 AATATAAATAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
**
76887530 TGGAAATG
131 TGGAAAAA
* *
76887538 ATATAATTAATATATGAATTTGATCCATACAAAATATTAATTGTATATATTTTATCAAATTTATT
1 ATATAATTAATATATGAATTTGATCCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
* * *
76887603 AATATAAA-AAGTTATATGAATTAATTTTGGTCAAAATATAAAAGACATGGAAATTAACATTCTT
66 AATATAAATAA-TTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTT
*
76887667 CTGGAAAAA
130 TTGGAAAAA
* * *
76887676 ATATAATTAATATATGAATTTGA-CTCATACAAGATATTAATTGTATATATTTCACTGAATTTAT
1 ATATAATTAATATATGAATTTGATC-CATACAAAATATTAATTGTATATATTTTACCGAATTTAT
* **
76887740 TAATATAAATAGTTATATTAATTAATTTTAGTCAAAATATAAAA
65 TAATATAAATAATTATATTAATTAATTTCGGTCAAAATATAAAA
76887784 TTAATATTCT
Statistics
Matches: 341, Mismatches: 40, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
137 3 0.01
138 250 0.73
139 88 0.26
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATCCATACAAAATATTAATTGTATATATTTTACCGAATTTATT
AATATAAATAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAATTAATATTCTTT
TGGAAAAA
Found at i:76887758 original size:276 final size:277
Alignment explanation
Indices: 76887260--76887782 Score: 787
Period size: 276 Copynumber: 1.9 Consensus size: 277
76887250 AGAGAATATA
* * * *
76887260 GATATAATTAATATATGAATTTGATTCATACTAAATATTAATTCTATTTATTTTACCGAATTTAT
1 GATATAATTAATATATGAATTTGATCCATACAAAATATTAATTCTATATATTTTACCAAATTTAT
* ** **
76887325 TAATATAAATACTTATATTTATTAATTTCGATAAAAAATATAAAAGACATGGAAATTAATTTTAT
66 TAATATAAAAACTTATATGAATTAATTTCGATAAAAAATATAAAAGACATGGAAATTAACATTAT
* * * * *
76887390 TTTGGAAACAATATAATTAATATATGAATTTGATTCATACAAAATATTACTTGTATATATTTTAC
131 TCTGGAAAAAATATAATTAATATATGAATTTGACTCATACAAAATATTAATTGTATATATTTCAC
* *
76887455 CGATTTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAACGACATTGAAGTT
196 CGAATTTATTAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAACGACATTGAAGTT
76887520 AATGTTCTTTTGGAAAT
261 AATGTTCTTTTGGAAAT
* *
76887537 GATATAATTAATATATGAATTTGATCCATACAAAATATTAATTGTATATATTTTATCAAATTTAT
1 GATATAATTAATATATGAATTTGATCCATACAAAATATTAATTCTATATATTTTACCAAATTTAT
* * * * *
76887602 TAATATAAAAAGTTATATGAATTAATTTTGGT-CAAAATATAAAAGACATGGAAATTAACATTCT
66 TAATATAAAAACTTATATGAATTAATTTCGATAAAAAATATAAAAGACATGGAAATTAACATTAT
*
76887666 TCTGGAAAAAATATAATTAATATATGAATTTGACTCATACAAGATATTAATTGTATATATTTCAC
131 TCTGGAAAAAATATAATTAATATATGAATTTGACTCATACAAAATATTAATTGTATATATTTCAC
* * * *
76887731 TGAATTTATTAATATAAATAGTTATATTAATTAATTTTAGTCAAAATATAAA
196 CGAATTTATTAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAA
76887783 ATTAATATTC
Statistics
Matches: 218, Mismatches: 28, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
276 133 0.61
277 85 0.39
ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41
Consensus pattern (277 bp):
GATATAATTAATATATGAATTTGATCCATACAAAATATTAATTCTATATATTTTACCAAATTTAT
TAATATAAAAACTTATATGAATTAATTTCGATAAAAAATATAAAAGACATGGAAATTAACATTAT
TCTGGAAAAAATATAATTAATATATGAATTTGACTCATACAAAATATTAATTGTATATATTTCAC
CGAATTTATTAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAACGACATTGAAGTT
AATGTTCTTTTGGAAAT
Found at i:76887917 original size:74 final size:75
Alignment explanation
Indices: 76887787--76887932 Score: 215
Period size: 74 Copynumber: 2.0 Consensus size: 75
76887777 TATAAAATTA
* * *
76887787 ATATTCTTTTGGAAAGAATATAATTTATTTTTCTAACTTTCCATTTGCCTTTTCTATCAATAAGG
1 ATATTCTTTTGGAAAGAAAATAATTTATTTTTCTAACTTTCCATTTGCCTTCTCTATCAATAAAG
76887852 GAATAATTGT
66 GAATAATTGT
* * *
76887862 ATATTCTTTTGGAAA-AAAATAATTTGTTTTTCTAATTTTCCAGTTT-CCTTCTCTATTAATAAA
1 ATATTCTTTTGGAAAGAAAATAATTTATTTTTCTAACTTTCCA-TTTGCCTTCTCTATCAATAAA
76887925 GGAATAAT
65 GGAATAAT
76887933 CTTGGTTTTC
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
74 46 0.72
75 18 0.28
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.47
Consensus pattern (75 bp):
ATATTCTTTTGGAAAGAAAATAATTTATTTTTCTAACTTTCCATTTGCCTTCTCTATCAATAAAG
GAATAATTGT
Found at i:76889842 original size:51 final size:51
Alignment explanation
Indices: 76889764--76889905 Score: 187
Period size: 50 Copynumber: 2.8 Consensus size: 51
76889754 TGTGAGGTCG
* *
76889764 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGATCA
* * * * * ** *
76889815 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGAT-GGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGATCA
76889865 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
76889906 GCTTTGGCTA
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
50 41 0.55
51 34 0.45
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (51 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTTAGATCA
Found at i:76892926 original size:15 final size:15
Alignment explanation
Indices: 76892906--76892961 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
76892896 GTATCTTGGG
76892906 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
76892921 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
76892936 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
76892951 TTTCTTTATTC
1 TTTCTTTATTC
76892962 GGTTTTTTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
14 4 0.11
15 27 0.77
16 4 0.11
ACGTcount: A:0.11, C:0.14, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:76896990 original size:49 final size:49
Alignment explanation
Indices: 76896861--76897005 Score: 177
Period size: 50 Copynumber: 2.9 Consensus size: 49
76896851 TCTATTGTGA
*
76896861 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACT
* * *
76896910 --TCGATCAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCG--CA-TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACT
* * * *
76896960 GGTCGCATGTGTAGTACTATGTGTAGGCTACTATGCGTACCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATA
76897006 GCTTTGGCTA
Statistics
Matches: 82, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
47 3 0.04
49 36 0.44
50 40 0.49
52 3 0.04
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGATAACT
Found at i:76906501 original size:18 final size:18
Alignment explanation
Indices: 76906422--76906536 Score: 88
Period size: 18 Copynumber: 6.3 Consensus size: 18
76906412 ACCGATCAAT
*
76906422 TGATTGATACTGAATAAC
1 TGATTGTTACTGAATAAC
* * *
76906440 TGATTATTATTGAATAAT
1 TGATTGTTACTGAATAAC
*
76906458 TGATTGTTACCGAATAAC
1 TGATTGTTACTGAATAAC
** *
76906476 TGGCTGTTACTGAATAAA
1 TGATTGTTACTGAATAAC
* * **
76906494 TAATTGTT-CTGATTGGC
1 TGATTGTTACTGAATAAC
*
76906511 TGATTGTTAATGAATATTAC
1 TGATTGTTACTGAATA--AC
76906531 TGATTG
1 TGATTG
76906537 ATTAATTGCT
Statistics
Matches: 70, Mismatches: 24, Indels: 4
0.71 0.24 0.04
Matches are distributed among these distances:
17 12 0.17
18 51 0.73
20 7 0.10
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (18 bp):
TGATTGTTACTGAATAAC
Found at i:76910442 original size:339 final size:339
Alignment explanation
Indices: 76909822--76910499 Score: 1311
Period size: 339 Copynumber: 2.0 Consensus size: 339
76909812 GGTGCCATTT
76909822 TAATGCTCGACTAAAAACTATTATTATAAGCAAATTCAATCAAGGGCAAATACTATTCCCATGTA
1 TAATGCTCGACTAAAAACTATTATTATAAGCAAATTCAATCAAGGGCAAATACTATTCCCATGTA
* *
76909887 CCTTTAAACTTAAGAATGCAACATCTCAACATATCCTCAAGTATCTGAATAATCTGCTCGGATTG
66 CCTTTAAACTCAAGAATGCAACATCTCAACATATCCTCAAGTATCTGAATAATCTGCTCGAATTG
76909952 ACTATATATTTGTACGTGAAAAGCAGTATAAAAGTGCAATTTAGTACCCAGAGCATCTTGTAATT
131 ACTATATATTTGTACGTGAAAAGCAGTATAAAAGTGCAATTTAGTACCCAGAGCATCTTGTAATT
76910017 TCTTCCAGAATCGTGGTGTGAATCTCAGATCTCTGTCTGACACTATAAACAATGGCACACCATGC
196 TCTTCCAGAATCGTGGTGTGAATCTCAGATCTCTGTCTGACACTATAAACAATGGCACACCATGC
*
76910082 AATCTCACGATATTAGAAATGTATAACTCAACTAATTTATCAAGCGAGTAATCGGATCGAACCGG
261 AATCTCACGATATTAGAAATGTATAACTCAACTAATTTATCAAGCGAGTAATCGGATCGAACCAG
76910147 AATAAAATGAGCTG
326 AATAAAATGAGCTG
76910161 TAATGCTCGACTAAAAACTATTATTATAAGCAAATTCAATCAAGGGCAAATACTATTCCCATGTA
1 TAATGCTCGACTAAAAACTATTATTATAAGCAAATTCAATCAAGGGCAAATACTATTCCCATGTA
76910226 CCTTTAAACTCAAGAATGCAACATCTCAACATATCCTCAAGTATCTGAATAATCTGCTCGAATTG
66 CCTTTAAACTCAAGAATGCAACATCTCAACATATCCTCAAGTATCTGAATAATCTGCTCGAATTG
*
76910291 ACTGTATATTTGTACGTGAAAAGCAGTATAAAAGTGCAATTTAGTACCCAGAGCATCTTGTAATT
131 ACTATATATTTGTACGTGAAAAGCAGTATAAAAGTGCAATTTAGTACCCAGAGCATCTTGTAATT
*
76910356 TCTTCGAGAATCGTGGTGTGAATCTCAGATCTCTGTCTGACACTATAAACAATGGCACACCATGC
196 TCTTCCAGAATCGTGGTGTGAATCTCAGATCTCTGTCTGACACTATAAACAATGGCACACCATGC
76910421 AATCTCACGATATTAGAAATGTATAACTCAACTAATTTATCAAGCGAGTAATCGGATCGAACCAG
261 AATCTCACGATATTAGAAATGTATAACTCAACTAATTTATCAAGCGAGTAATCGGATCGAACCAG
76910486 AATAAAATGAGCTG
326 AATAAAATGAGCTG
76910500 ATTTCATCAA
Statistics
Matches: 334, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
339 334 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.29
Consensus pattern (339 bp):
TAATGCTCGACTAAAAACTATTATTATAAGCAAATTCAATCAAGGGCAAATACTATTCCCATGTA
CCTTTAAACTCAAGAATGCAACATCTCAACATATCCTCAAGTATCTGAATAATCTGCTCGAATTG
ACTATATATTTGTACGTGAAAAGCAGTATAAAAGTGCAATTTAGTACCCAGAGCATCTTGTAATT
TCTTCCAGAATCGTGGTGTGAATCTCAGATCTCTGTCTGACACTATAAACAATGGCACACCATGC
AATCTCACGATATTAGAAATGTATAACTCAACTAATTTATCAAGCGAGTAATCGGATCGAACCAG
AATAAAATGAGCTG
Found at i:76921048 original size:37 final size:37
Alignment explanation
Indices: 76920989--76921097 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
76920979 AGCTCAGACG
* *
76920989 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
76921026 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
76921063 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
76921098 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:76921331 original size:47 final size:47
Alignment explanation
Indices: 76921260--76921396 Score: 215
Period size: 47 Copynumber: 3.0 Consensus size: 47
76921250 TTTCACACTA
* * *
76921260 GCCATTCGGCTTTA-C-CACATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTG
*
76921305 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTG
*
76921352 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACAT
76921397 AAAATCTTAA
Statistics
Matches: 84, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
45 13 0.15
46 1 0.01
47 70 0.83
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTG
Found at i:76923202 original size:25 final size:26
Alignment explanation
Indices: 76923174--76923228 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
76923164 CTAAATTTTC
76923174 TCACAT-AAGTCCTATTTAATAAAAT
1 TCACATAAAGTCCTATTTAATAAAAT
* *
76923199 TCACTTAAAGTCTTATTTAATAAAAT
1 TCACATAAAGTCCTATTTAATAAAAT
76923225 TCAC
1 TCAC
76923229 TTACAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 5 0.19
26 22 0.81
ACGTcount: A:0.42, C:0.16, G:0.04, T:0.38
Consensus pattern (26 bp):
TCACATAAAGTCCTATTTAATAAAAT
Done.