Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 235 of 279
Found at i:76923210 original size:26 final size:26
Alignment explanation
Indices: 76923180--76923231 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
76923170 TTTCTCACAT
76923180 AAGTCCTATTTAATAAAATTCACTTA
1 AAGTCCTATTTAATAAAATTCACTTA
*
76923206 AAGTCTTATTTAATAAAATTCACTTA
1 AAGTCCTATTTAATAAAATTCACTTA
76923232 CAATTAACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.13, G:0.04, T:0.40
Consensus pattern (26 bp):
AAGTCCTATTTAATAAAATTCACTTA
Found at i:76926069 original size:43 final size:43
Alignment explanation
Indices: 76925930--76926086 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
76925920 ATATTGCACA
* * *
76925930 ATGCCAATGTCCCAGACGTGGTCTTACATGCT-ATCTCATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATG-TAATCACATATCG
* * * *
76925973 ATGTC-ACTATCCCAGACAGGGTCTTACATG-AATCAAATAT-G
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAATCACATATCG
* * * * *
76926014 ATGCTAATGTCCCAAACATGGTCTTACACGTAATCACAGATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCACATATCG
* *
76926057 ATGCCAACGTCCCATACGTGGTCTTACATG
1 ATGCCAACGTCCCAGACATGGTCTTACATG
76926087 AGAACACATA
Statistics
Matches: 88, Mismatches: 21, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
41 22 0.25
42 17 0.19
43 49 0.56
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:76927594 original size:340 final size:340
Alignment explanation
Indices: 76926974--76927653 Score: 1315
Period size: 340 Copynumber: 2.0 Consensus size: 340
76926964 ACCGCCAAAC
76926974 GAAATGAAAGTCACCGCTCATTGATTTCCCCTACACCATAAAAATACAACAACGTTCAAATATTC
1 GAAATGAAAGTCACCGCTCATTGATTTCCCCTACACCATAAAAATACAACAACGTTCAAATATTC
*
76927039 AGAAAAGCGATACGAAGAAAGCCAACGAAAACCCACTTACTGACTACATGAAGAAAAAGCAAGGA
66 AGAAAAGCGATACGAAGAAAGCCAACGAAAACCCACTTACCGACTACATGAAGAAAAAGCAAGGA
76927104 TTCGCGACGCCCCAACAATGAGATTAACAAAAGAATTAAAAATAGAGGAGGAATTTAGTTTGGCA
131 TTCGCGACGCCCCAACAATGAGATTAACAAAAGAATTAAAAATAGAGGAGGAATTTAGTTTGGCA
76927169 AGGAAAACAAAATCAACAAAATGAAACTATGGATTTGTTTCTTTGAAAAAGAAATAACGTCAGAA
196 AGGAAAACAAAATCAACAAAATGAAACTATGGATTTGTTTCTTTGAAAAAGAAATAACGTCAGAA
76927234 GTAGAGGAAATTTGGGAAAAATAAAATTCAATTTTGACAAAAACAAAGATATGATGCATATCCCC
261 GTAGAGGAAATTTGGGAAAAATAAAATTCAATTTTGACAAAAACAAAGATATGATGCATATCCCC
76927299 TGATTTCCTCCCACT
326 TGATTTCCTCCCACT
* * * *
76927314 GAAATGAAAGTCATCGCTCGTTGATTTCCCCTACTCCATAAAAATACAACAACGTTCAAATCTTC
1 GAAATGAAAGTCACCGCTCATTGATTTCCCCTACACCATAAAAATACAACAACGTTCAAATATTC
76927379 AGAAAAGCGATACGAAGAAAGCCAACGAAAACCCACTTACCGACTACATGAAGAAAAAGCAAGGA
66 AGAAAAGCGATACGAAGAAAGCCAACGAAAACCCACTTACCGACTACATGAAGAAAAAGCAAGGA
76927444 TTCGCGACGCCCCAACAATGAGATTAACAAAAGAATTAAAAATAGAGGAGGAATTTAGTTTGGCA
131 TTCGCGACGCCCCAACAATGAGATTAACAAAAGAATTAAAAATAGAGGAGGAATTTAGTTTGGCA
76927509 AGGAAAACAAAATCAACAAAATGAAACTATGGATTTGTTTCTTTGAAAAAGAAATAACGTCAGAA
196 AGGAAAACAAAATCAACAAAATGAAACTATGGATTTGTTTCTTTGAAAAAGAAATAACGTCAGAA
76927574 GTAGAGGAAATTTGGGAAAAATAAAATTCAATTTTGACAAAAACAAAGATATGATGCATATCCCC
261 GTAGAGGAAATTTGGGAAAAATAAAATTCAATTTTGACAAAAACAAAGATATGATGCATATCCCC
76927639 TGATTTCCTCCCACT
326 TGATTTCCTCCCACT
76927654 AACCCACTTC
Statistics
Matches: 335, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
340 335 1.00
ACGTcount: A:0.44, C:0.18, G:0.16, T:0.22
Consensus pattern (340 bp):
GAAATGAAAGTCACCGCTCATTGATTTCCCCTACACCATAAAAATACAACAACGTTCAAATATTC
AGAAAAGCGATACGAAGAAAGCCAACGAAAACCCACTTACCGACTACATGAAGAAAAAGCAAGGA
TTCGCGACGCCCCAACAATGAGATTAACAAAAGAATTAAAAATAGAGGAGGAATTTAGTTTGGCA
AGGAAAACAAAATCAACAAAATGAAACTATGGATTTGTTTCTTTGAAAAAGAAATAACGTCAGAA
GTAGAGGAAATTTGGGAAAAATAAAATTCAATTTTGACAAAAACAAAGATATGATGCATATCCCC
TGATTTCCTCCCACT
Found at i:76929104 original size:42 final size:43
Alignment explanation
Indices: 76929055--76929155 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 43
76929045 TAAAACCATG
* *
76929055 TCTGGGACATCGACATCG-TATCTG-ATTTCGTGTAAGACC-CT
1 TCTGGGACATCGACATCGATAT-TGAATTACATGTAAGACCACT
** *
76929096 ATCTGGGACAGAGGCATCGATATTGAATTACATGTAAGACCACT
1 -TCTGGGACATCGACATCGATATTGAATTACATGTAAGACCACT
*
76929140 TCTGGGACGTCGACAT
1 TCTGGGACATCGACAT
76929156 TGTACTTGAT
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
42 17 0.36
43 28 0.60
44 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (43 bp):
TCTGGGACATCGACATCGATATTGAATTACATGTAAGACCACT
Found at i:76939586 original size:21 final size:21
Alignment explanation
Indices: 76939575--76939635 Score: 97
Period size: 21 Copynumber: 2.9 Consensus size: 21
76939565 TATAATGAGT
76939575 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
76939596 ATATCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
76939617 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
76939636 ATATCAATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:76939603 original size:5 final size:5
Alignment explanation
Indices: 76939575--76939646 Score: 56
Period size: 5 Copynumber: 14.0 Consensus size: 5
76939565 TATAATGAGT
* * * * *
76939575 ATATC ATAGC ATATC ATGTGC ATATC ATAAC ATATC ATGTGC ATATC ATGTC
1 ATATC ATATC ATATC ATAT-C ATATC ATATC ATATC ATAT-C ATATC ATATC
*
76939627 ATATC ATGT- ATATC AATATC
1 ATATC ATATC ATATC -ATATC
76939647 TCAAGCATCT
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
4 3 0.06
5 35 0.69
6 13 0.25
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (5 bp):
ATATC
Found at i:76939634 original size:10 final size:10
Alignment explanation
Indices: 76939575--76939641 Score: 75
Period size: 10 Copynumber: 6.6 Consensus size: 10
76939565 TATAATGAGT
76939575 ATATCATAG-C
1 ATATCAT-GTC
76939585 ATATCATGTGC
1 ATATCATGT-C
**
76939596 ATATCATAAC
1 ATATCATGTC
76939606 ATATCATGTGC
1 ATATCATGT-C
76939617 ATATCATGTC
1 ATATCATGTC
76939627 ATATCATGT-
1 ATATCATGTC
76939636 ATATCA
1 ATATCA
76939642 ATATCTCAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
9 7 0.14
10 25 0.50
11 18 0.36
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:76942680 original size:40 final size:40
Alignment explanation
Indices: 76942636--76942857 Score: 206
Period size: 40 Copynumber: 5.6 Consensus size: 40
76942626 TCCTCGTTCG
*
76942636 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACA
* *
76942676 AATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCACACA
* *
76942716 AATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCACACA
1 AATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCACACA
* * *
76942755 AATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCACA
1 AATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAACTCACACA
* * * * * *
76942795 AATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGGTTATAGTAACTCA-CACA
*
76942836 AA-GCCTTAGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
76942858 ACATCATTCA
Statistics
Matches: 152, Mismatches: 20, Indels: 20
0.79 0.10 0.10
Matches are distributed among these distances:
38 2 0.01
39 31 0.20
40 108 0.71
41 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACA
Found at i:76942735 original size:79 final size:78
Alignment explanation
Indices: 76942636--76942858 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 78
76942626 TCCTCGTTCG
* *
76942636 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
76942701 TTAGTAACTCGCACA
64 TTAGTAACTCGCACA
* * *
76942716 AATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCACACAAATGCCTTC-GGATCTTAGTCCGGAT
1 AATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAGCCCGGAT
*
76942780 TTAGTATCTCGCACA
64 TTAGTAACTCGCACA
* * * * * * *
76942795 AATACCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTAGGGACTTAGCCCGGA
1 AATGCCTTCGG-GCTTAGCCCGG-TATAGTAACTCA-CACAAATGCCTTCGGGACTTAGCCCGGA
76942859 CATCATTCAA
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
78 4 0.03
79 65 0.54
80 42 0.35
81 10 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (78 bp):
AATGCCTTCGGGCTTAGCCCGGTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATTT
AGTAACTCGCACA
Found at i:76942818 original size:119 final size:120
Alignment explanation
Indices: 76942636--76942858 Score: 267
Period size: 119 Copynumber: 1.9 Consensus size: 120
76942626 TCCTCGTTCG
*
76942636 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATACCTTCGGGACTTAACCCGGAT
* * *
76942701 TTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCACACA
66 ATAGTAACTTAGCACAAA-GCCTTAGGGACTTAGCCCGGAATTAGTATCTCACACA
* * * * **
76942755 AATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCACAAATACCTTC-GGATCTTAGTCCG
1 AATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCACACAAATACCTTCGGGA-CTTAACCCG
* *
76942817 GATATGGTCACTTAGCACAAAGCCTTAGGGACTTAGCCCGGA
63 GATATAGTAACTTAGCACAAAGCCTTAGGGACTTAGCCCGGA
76942859 CATCATTCAA
Statistics
Matches: 87, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
118 6 0.07
119 60 0.69
120 21 0.24
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATACCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTAGGGACTTAGCCCGGAATTAGTATCTCACACA
Found at i:76950689 original size:45 final size:45
Alignment explanation
Indices: 76950547--76950762 Score: 218
Period size: 45 Copynumber: 5.0 Consensus size: 45
76950537 TTTTATCAAA
* *
76950547 TCACCGGCATT-TAGCCTGCTAGGTTTTAAA--CCCGAAT--TCATC
1 TCACCGGCATTATAGCCTGCTAGG-CTCAAAGGCCCGAATAGT-ATC
* * * *
76950589 -CACCGGCATT-TCGCCTGCTAGGCTCGAA-GTCC-AATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
76950630 TCACCGGCATTATAGCTTACTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
76950675 TGACCGACATTATAGCCTGCTAGGCTCAAAGGCTCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
76950720 TCACTGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
76950763 CCGTACGATA
Statistics
Matches: 145, Mismatches: 22, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
40 6 0.04
41 27 0.19
42 10 0.07
43 14 0.10
44 3 0.02
45 84 0.58
46 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:76961911 original size:45 final size:44
Alignment explanation
Indices: 76961843--76961930 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 44
76961833 TTTTATCAAA
* *
76961843 TCACCGGCATTTAGCCTGCTAGGCTCGAAGGCCTGAATAGTATC
1 TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCAGAATAGTATC
*
76961887 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAGTAT
1 TCACCGGCATT-TAGCCTGCTAGGCTCAAAGGCCAGAATAGTAT
76961931 TGTACGATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 10 0.25
45 30 0.75
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (44 bp):
TCACCGGCATTTAGCCTGCTAGGCTCAAAGGCCAGAATAGTATC
Found at i:76968519 original size:21 final size:22
Alignment explanation
Indices: 76968487--76968539 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
76968477 CAACTTTCAG
76968487 ACACCATAAA-TTGCAGCATTTA
1 ACACC-TAAATTTGCAGCATTTA
*
76968509 ACACCTAAATTTTCAGCATTTA
1 ACACCTAAATTTGCAGCATTTA
*
76968531 ACACATAAA
1 ACACCTAAA
76968540 ATGGTTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.28
Consensus pattern (22 bp):
ACACCTAAATTTGCAGCATTTA
Found at i:76971991 original size:41 final size:41
Alignment explanation
Indices: 76971922--76972162 Score: 288
Period size: 41 Copynumber: 5.9 Consensus size: 41
76971912 ATTATATGAC
* * *
76971922 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCTGGT
**
76971963 TTTTAGCGGCGTTTTACCAAAAGTGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCTGGT
* *
76972004 TTTCAGCGGCGTTTCACCAAAAACGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCTGGT
* **** * *
76972045 TTTTAGCAGCGTTTTTGGTAAAATGCCGCTATTGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCTGGT
** * *
76972085 TTTTAGCGGCGTTTTACCAAAAAATACCACTATTGCTCT-GT
1 TTTTAGCGGCGTTTTACC-AAAAACGCCGCTAATGCTCTGGT
*
76972126 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTC
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTC
76972163 CGTGTTTTAT
Statistics
Matches: 173, Mismatches: 26, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
40 32 0.18
41 141 0.82
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCTGGT
Found at i:76972171 original size:122 final size:123
Alignment explanation
Indices: 76971946--76972170 Score: 337
Period size: 122 Copynumber: 1.8 Consensus size: 123
76971936 TATCGAAAGC
* * *
76971946 GCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGTGCCGCTAATGCTCTGGTTTTCAGC
1 GCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAATACCACTAATGCTCTGGTTTTCAGC
*
76972011 GGCGTTTCACCAAAAACGCCGCTAATGCTCTGGTTTTTAGCAGCGTTTTTGGTAAAAT
66 GGCGTTTCACCAAAAACGCCGCTAATGCTCCGGTTTTTAGCAGCGTTTTTGGTAAAAT
* * *
76972069 GCCGCTATTGCTCT-GTTTTTAGCGGCGTTTTACCAAAAAATACCACTATTGCTCT-GTTTTTAG
1 GCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACC-AAAAATACCACTAATGCTCTGGTTTTCAG
* *
76972132 CGGCGTTTTACCAAAAACGCCGCTATTGCTCCGTGTTTT
65 CGGCGTTTCACCAAAAACGCCGCTAATGCTCCG-GTTTT
76972171 ATAATTTCTA
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
122 57 0.63
123 34 0.37
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (123 bp):
GCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAATACCACTAATGCTCTGGTTTTCAGC
GGCGTTTCACCAAAAACGCCGCTAATGCTCCGGTTTTTAGCAGCGTTTTTGGTAAAAT
Found at i:76972720 original size:43 final size:43
Alignment explanation
Indices: 76972654--76972747 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 43
76972644 CCGGTATTAC
* * *
76972654 GCCTGCTAGGCTCGAAGCCCGATATTAACTCACTGGCATTATA
1 GCCTGCTAGACTCAAAGCCCGATATTAAATCACTGGCATTATA
* * *
76972697 GCCTGCTAGACTTAAAGCTCGATATTAAATCGCTGGCATTATA
1 GCCTGCTAGACTCAAAGCCCGATATTAAATCACTGGCATTATA
76972740 GCCTGCTA
1 GCCTGCTA
76972748 AGCTCGTAGG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (43 bp):
GCCTGCTAGACTCAAAGCCCGATATTAAATCACTGGCATTATA
Found at i:76979431 original size:43 final size:43
Alignment explanation
Indices: 76979370--76979468 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 43
76979360 CCGGTATTAC
** * *
76979370 GCCTGCTAGGCTCGAAGCCAGATATTAACTTACAAACATTATA
1 GCCTGCTAGGCTTAAAGCCAGATATTAAATCACAAACATTATA
* ***
76979413 GCCTGCTAGGCTTAAAGCCCGATATTAAATCACCGGCATTATA
1 GCCTGCTAGGCTTAAAGCCAGATATTAAATCACAAACATTATA
76979456 GCCTGCTAGGCTT
1 GCCTGCTAGGCTT
76979469 GAAGGCCCGA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (43 bp):
GCCTGCTAGGCTTAAAGCCAGATATTAAATCACAAACATTATA
Found at i:76982552 original size:96 final size:96
Alignment explanation
Indices: 76982452--76982672 Score: 257
Period size: 96 Copynumber: 2.3 Consensus size: 96
76982442 TGTCAGTGCT
* * * *
76982452 GATGCCATGTCCTAAACATGGTCTTATACTAGCACAAATATCAA-AGCCAATGCCATGTCCCAGC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACAAATATCAACA-CCAATGCCATGTCCCAGA
* * *
76982516 CATGG-TCTTACACTGGCTAACATATCAATGTC
65 CA-GGCTCTTACACAGGATAACATATCAATGCC
* * * * *
76982548 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACATCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACAAATATCAACACCAATGCCATGTCCCAGAC
** *
76982613 AGGCTCTTACACAGGATCTCTTATCAATGCC
66 AGGCTCTTACACAGGATAACATATCAATGCC
* *
76982644 GATGCCATATCCCAGATATGGTCTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
76982673 GGGATCTCAA
Statistics
Matches: 106, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
95 2 0.02
96 103 0.97
97 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACAAATATCAACACCAATGCCATGTCCCAGAC
AGGCTCTTACACAGGATAACATATCAATGCC
Found at i:76982680 original size:48 final size:48
Alignment explanation
Indices: 76982452--76982678 Score: 233
Period size: 48 Copynumber: 4.7 Consensus size: 48
76982442 TGTCAGTGCT
* * * * * *
76982452 GATGCCATGTCCTAAACATGGTCTTATACTAGCA-CAAATATCAAAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-GGATCACATATCAATGCC
* * * * *
76982500 AATGCCATGTCCCAGCCATGGTCTTACACTGGCTAACATATCAATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGATCACATATCAATGCC
* ***
76982548 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACATC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGATCACATATCAATGCC
* * *
76982596 GATGCCATGTCCCAGACA-GGCTCTTACACAGGATCTCTTATCAATGCC
1 GATGCCATGTCCCAGACATGG-TCTTACACTGGATCACATATCAATGCC
* * *
76982644 GATGCCATATCCCAGATATGGTCTTACACGGGATC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGATC
76982679 TCAATACTCA
Statistics
Matches: 150, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
47 3 0.02
48 145 0.97
49 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGATCACATATCAATGCC
Found at i:76986082 original size:12 final size:12
Alignment explanation
Indices: 76986065--76986090 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76986055 AAAATAGGGC
76986065 TTTAGCGGCGTT
1 TTTAGCGGCGTT
76986077 TTTAGCGGCGTT
1 TTTAGCGGCGTT
76986089 TT
1 TT
76986091 ATCAACAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:76986174 original size:40 final size:40
Alignment explanation
Indices: 76986122--76986527 Score: 188
Period size: 41 Copynumber: 9.9 Consensus size: 40
76986112 TTTAAAATAC
*
76986122 AGAGCAATAGCGGCGTTTTTCT-TAAAACGCTGCTAAAAAT
1 AGAGCAATAGCGGCGTTTTT-TATAAAACGCCGCTAAAAAT
* *
76986162 AGAGCAACAGCGGCATTTTTTACTAAAACGCCGCTAAAAAT
1 AGAGCAATAGCGGCGTTTTTTA-TAAAACGCCGCTAAAAAT
** *
76986203 AGAGCAATAGCGGCGTTTTTTACTAAAACATCGTTAAAAACT
1 AGAGCAATAGCGGCGTTTTTTA-TAAAACGCCGCTAAAAA-T
* * * *** ** *
76986245 A-ATCATTAGCGGCGCTTTAGGTAAAACGCCATTAAAAACC
1 AGAGCAATAGCGGCGTTTTTTATAAAACGCCGCTAAAAA-T
* * * * *** * *
76986285 AGATCATTAGCGGTGCTTTAGGTAAAACGCCACTAAAAACC
1 AGAGCAATAGCGGCGTTTTTTATAAAACGCCGCTAAAAA-T
* * * *** * *
76986326 AGATCATTAGCGGCGCTTTGGGTAAAGCGCCGCTAAAAACC
1 AGAGCAATAGCGGCGTTTTTTATAAAACGCCGCTAAAAA-T
* * *** *
76986367 AGAGCATTAGCGGCGCTTTGGGTAAAACGCCGCTAAAAACC
1 AGAGCAATAGCGGCGTTTTTTATAAAACGCCGCTAAAAA-T
* * * *** *
76986408 AGAGCATTAGCGGTGCTTTCGGTAAAACGCCGCTAAAAACC
1 AGAGCAATAGCGGCGTTTTTTATAAAACGCCGCTAAAAA-T
* * *** *
76986449 AGTA-CATTAGCGGCGCTTTCGGTAAAACGCCGCTAAAAACC
1 AG-AGCAATAGCGGCGTTTTTTATAAAACGCCGCTAAAAA-T
* * * **
76986490 AGATCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
1 AGAGCAATAGCGGCGTTTTTTATAAAACGCCGCTAAAA
76986528 GTCATAGAAC
Statistics
Matches: 330, Mismatches: 30, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.00
40 35 0.11
41 291 0.88
42 3 0.01
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.22
Consensus pattern (40 bp):
AGAGCAATAGCGGCGTTTTTTATAAAACGCCGCTAAAAAT
Found at i:76986291 original size:41 final size:41
Alignment explanation
Indices: 76986185--76986527 Score: 433
Period size: 41 Copynumber: 8.4 Consensus size: 41
76986175 CATTTTTTAC
* * * * *
76986185 TAAAACGCCGCTAAAAA-TAGAGCAATAGCGGCGTTTTTTA-C
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCG--CTTTAGG
** * *
76986226 TAAAACATCGTTAAAAACTA-ATCATTAGCGGCGCTTTAGG
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
** *
76986266 TAAAACGCCATTAAAAACCAGATCATTAGCGGTGCTTTAGG
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
* *
76986307 TAAAACGCCACTAAAAACCAGATCATTAGCGGCGCTTTGGG
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
* * *
76986348 TAAAGCGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTGGG
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
* * *
76986389 TAAAACGCCGCTAAAAACCAGAGCATTAGCGGTGCTTTCGG
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
*
76986430 TAAAACGCCGCTAAAAACCAG-TACATTAGCGGCGCTTTCGG
1 TAAAACGCCGCTAAAAACCAGAT-CATTAGCGGCGCTTTAGG
*
76986471 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTTGG
1 TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
76986512 TAAAACGCCGCTAAAA
1 TAAAACGCCGCTAAAA
76986528 GTCATAGAAC
Statistics
Matches: 273, Mismatches: 24, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
39 4 0.01
40 16 0.06
41 250 0.92
42 3 0.01
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.21
Consensus pattern (41 bp):
TAAAACGCCGCTAAAAACCAGATCATTAGCGGCGCTTTAGG
Found at i:76991442 original size:40 final size:40
Alignment explanation
Indices: 76991370--76991577 Score: 337
Period size: 40 Copynumber: 5.2 Consensus size: 40
76991360 CAAACCCAAG
* * *
76991370 TGCCTTTGGGATTTAG-CCGGATATAGCAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
*
76991409 TGCCTTCGGGACTTAGCCCGTATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
76991449 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
* * *
76991489 TGCCTTCGGGACTTAGCCCGGATATAGTCACTAGTACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
*
76991529 TGCCTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
76991569 TGCCTTCGG
1 TGCCTTCGG
76991578 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 14 0.09
40 144 0.91
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
Found at i:76993118 original size:13 final size:13
Alignment explanation
Indices: 76993100--76993125 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76993090 ATTTTTATTT
76993100 TTAACATAAAATA
1 TTAACATAAAATA
76993113 TTAACATAAAATA
1 TTAACATAAAATA
76993126 ATTATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:76996232 original size:28 final size:28
Alignment explanation
Indices: 76996200--76996263 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
76996190 ATTTACTAAC
*
76996200 TACCCCTATGTATGCAAAATTACCATTA
1 TACCCCTATGTATGCAAAATGACCATTA
*
76996228 TACCCCTATGTATGCAAAATGACCTTTA
1 TACCCCTATGTATGCAAAATGACCATTA
76996256 TACCCCTA
1 TACCCCTA
76996264 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCATTA
Found at i:76996410 original size:28 final size:29
Alignment explanation
Indices: 76996370--76996431 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 29
76996360 GGAAGCGTCT
*
76996370 TGGTGGCTATGCCACAAATTATCTGT-TC
1 TGGTGGCTATGCCACAAAATATCTGTATC
76996398 TGGTGGC-ACTGCCACAAAATATCTGTATC
1 TGGTGGCTA-TGCCACAAAATATCTGTATC
76996427 TGGTG
1 TGGTG
76996432 ACTCTGTCAC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
27 1 0.03
28 23 0.74
29 7 0.23
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (29 bp):
TGGTGGCTATGCCACAAAATATCTGTATC
Found at i:76996442 original size:29 final size:28
Alignment explanation
Indices: 76996379--76996442 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
76996369 TTGGTGGCTA
* *
76996379 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
76996407 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
76996436 TGTCACA
1 TGCCACA
76996443 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:76996924 original size:18 final size:18
Alignment explanation
Indices: 76996885--76996925 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
76996875 TAATAAGGCC
* *
76996885 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
76996903 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
76996921 TTTTA
1 TTTTA
76996926 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:77000677 original size:28 final size:29
Alignment explanation
Indices: 77000604--77000716 Score: 126
Period size: 28 Copynumber: 4.0 Consensus size: 29
77000594 AGCATGGCTG
* *
77000604 CCAGATACAGA-AAA-TGTGACAGAGTCA
1 CCAGATACAGATAAATTGTGGCAGAGCCA
** *
77000631 CCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGATACAGATAAATTGTGGCAGAGCCA
*
77000660 CCAGA-ACAGATAAATTGTGGCAGGGCCA
1 CCAGATACAGATAAATTGTGGCAGAGCCA
* *
77000688 CCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATTGTGGCAGAGCCA
77000716 C
1 C
77000717 AGGACGCTTC
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
27 11 0.15
28 47 0.64
29 15 0.21
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (29 bp):
CCAGATACAGATAAATTGTGGCAGAGCCA
Found at i:77000716 original size:56 final size:56
Alignment explanation
Indices: 77000604--77000709 Score: 144
Period size: 56 Copynumber: 1.9 Consensus size: 56
77000594 AGCATGGCTG
* *
77000604 CCAGATACAGAAAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGATACAGAAAATGTGACAGAGCCACCAGATACAGATAATTTGTGGCAGTGCCA
* *
77000660 CCAGA-ACAGATAAATTGTGGCAGGGCCACCAGA-ACAGATAATTTGTGGCA
1 CCAGATACAGA-AAA-TGTGACAGAGCCACCAGATACAGATAATTTGTGGCA
77000710 TAGCCACAGG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
55 5 0.11
56 24 0.55
57 15 0.34
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (56 bp):
CCAGATACAGAAAATGTGACAGAGCCACCAGATACAGATAATTTGTGGCAGTGCCA
Found at i:77000871 original size:28 final size:28
Alignment explanation
Indices: 77000824--77000887 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
77000814 AAATTAACCC
*
77000824 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
77000852 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
77000880 TAGGGGTA
1 TAGGGGTA
77000888 GTCTAGTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:77001972 original size:12 final size:13
Alignment explanation
Indices: 77001953--77001985 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
77001943 GGGTTCAGCT
77001953 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
77001966 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
77001978 ATGGAGAA
1 ATGGAGAA
77001986 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:77008291 original size:28 final size:28
Alignment explanation
Indices: 77008243--77008333 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
77008233 GTGACAGAGT
*
77008243 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
77008272 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
77008300 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
77008328 CACCAG
1 CACCAG
77008334 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:77008491 original size:28 final size:28
Alignment explanation
Indices: 77008440--77008503 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
77008430 AAATTAACCC
*
77008440 TAGGGGTATAAAGGTCATTCTGCATACA
1 TAGGGGTATAAAGGTAATTCTGCATACA
* *
77008468 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTCTGCATACA
77008496 TAGGGGTA
1 TAGGGGTA
77008504 GTCTAGTTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.31
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTCTGCATACA
Found at i:77010048 original size:40 final size:40
Alignment explanation
Indices: 77010017--77010226 Score: 262
Period size: 40 Copynumber: 5.3 Consensus size: 40
77010007 GGACTAAGAT
* * *
77010017 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATATTAAA-TCCGGGTTAAGTC
* *
77010057 CCGAAGGCCTTTGTGCGAGATATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
* *
77010097 CCGAAGACATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
* *
77010137 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
* * * * * *
77010177 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
77010216 CCGAAGGCATT
1 CCGAAGGCATT
77010227 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 35 0.22
40 118 0.76
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATATTAAATCCGGGTTAAGTC
Found at i:77010246 original size:79 final size:80
Alignment explanation
Indices: 77009965--77010261 Score: 212
Period size: 80 Copynumber: 3.7 Consensus size: 80
77009955 TGAATGCTGT
* ** * * * **
77009965 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
77010028 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * ** * *
77010045 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ATTAAATCCGGGTTAAGTCCCGAAGACATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
77010109 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
77010125 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
77010189 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
77010204 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
77010262 TACGTGATTT
Statistics
Matches: 182, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 109 0.60
81 11 0.06
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:77012823 original size:27 final size:27
Alignment explanation
Indices: 77012793--77013474 Score: 775
Period size: 27 Copynumber: 25.3 Consensus size: 27
77012783 CCAAAGTACT
*
77012793 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
77012820 CTCGATTTACAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** *
77012847 CTCGATTTTTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
77012874 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
77012901 CTC-AGTTTACAGAATTACCGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
**
77012928 CTCGATTTACAGAATTATTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** * **
77012955 CTCGATTTTTAAAATTACCGTTTTATG
1 CTCGATTTACAGAATTACCGTTTTACC
77012982 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
77013009 CTC-AGTTTACAGAATTACCATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
77013036 TTCGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** * *
77013063 CTCGATTTTTAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
77013090 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** * *
77013117 CTCGATTTGTAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
77013144 CTCGATTTATAGAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
77013171 CTC-AGTTTACAGAATTACTGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* ** * *
77013198 CTTGATTTGTAAAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
***
77013225 CTCGATTTACAGAATTATTATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* **
77013252 CT-TAGTTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
* *
77013279 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
**
77013306 CTC-AGTTTACAGAATTATTGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
77013333 CTCGATTTACAGAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
** *
77013360 CTCGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
77013387 CTTGATTTGCAGAATTACTAG-TTTACC
1 CTCGATTTACAGAATTAC-CGTTTTACC
* *
77013414 CTC-AGTTTACAAAATTATCGTTTTACC
1 CTCGA-TTTACAGAATTACCGTTTTACC
*
77013441 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
77013468 CTTGATT
1 CTCGATT
77013475 GTGAAATTAC
Statistics
Matches: 558, Mismatches: 83, Indels: 28
0.83 0.12 0.04
Matches are distributed among these distances:
26 7 0.01
27 544 0.97
28 7 0.01
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:77013547 original size:54 final size:54
Alignment explanation
Indices: 77013479--77013629 Score: 187
Period size: 54 Copynumber: 2.8 Consensus size: 54
77013469 TTGATTGTGA
* ****
77013479 AATTACTGAAATACCCCTGTAGGGTAGAATTTTTTAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * *
77013533 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
* * *
77013587 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAGATACCC
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCAAAATACCC
77013630 TTGTGAGGTA
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 1 0.01
54 82 0.99
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTATAGGGTAG
Found at i:77013582 original size:81 final size:81
Alignment explanation
Indices: 77013478--77013648 Score: 218
Period size: 81 Copynumber: 2.1 Consensus size: 81
77013468 CTTGATTGTG
** * ** * *
77013478 AAATTACTGAAATACCCCTGTAGGGTAGAATTTTTTAAATACCCCTATAGGGTAGAATTACTGAA
1 AAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAA
77013543 ATACCCTTAT-AGGATA
66 ATACCCTTATGAGG-TA
* * * *
77013559 GAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAG
1 AAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAA
*
77013624 ATACCCTTGTGAGGTA
66 ATACCCTTATGAGGTA
77013640 AAATTACCA
1 AAATTACCA
77013649 TTTTGTCCCT
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 73 0.96
82 3 0.04
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTATAGGGTAGAAATACCGAA
ATACCCTTATGAGGTA
Found at i:77013647 original size:27 final size:27
Alignment explanation
Indices: 77013479--77013647 Score: 169
Period size: 27 Copynumber: 6.3 Consensus size: 27
77013469 TTGATTGTGA
* *
77013479 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**** * *
77013506 AATTTTTTAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
77013533 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
77013560 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
77013587 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
77013614 AAATACCGAGATACCCTTGT-GAGGTAA
1 AATTACCGAAATACCCTTGTAG-GGTAG
77013641 AATTACC
1 AATTACC
77013648 ATTTTGTCCC
Statistics
Matches: 119, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
26 1 0.01
27 118 0.99
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:77013884 original size:27 final size:26
Alignment explanation
Indices: 77013846--77013928 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
77013836 CGGAGGAAGC
*
77013846 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
77013873 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
77013899 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
77013926 GTT
1 GTT
77013929 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:77014048 original size:22 final size:22
Alignment explanation
Indices: 77014016--77014074 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
77014006 CCCGTTATTA
*
77014016 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
77014038 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
77014060 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
77014075 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:77014285 original size:27 final size:26
Alignment explanation
Indices: 77014239--77014312 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 26
77014229 TAGGTGGGTT
* * *
77014239 TGCCACATTATTTGATTCTGGTGGCTC
1 TGCCACAATATCTG-TTCTGGTGACTC
77014266 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGT-TCTGGTGACTC
* *
77014293 TGTCACGATATCTGTTCTGG
1 TGCCACAATATCTGTTCTGG
77014313 CAGCCATGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 6 0.15
27 35 0.85
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:77014447 original size:12 final size:12
Alignment explanation
Indices: 77014430--77014607 Score: 80
Period size: 12 Copynumber: 14.7 Consensus size: 12
77014420 TTGCATTCAC
*
77014430 ATTCTGTTTCTA
1 ATTCTGATTCTA
*
77014442 ATTCTG-TCACGTA
1 ATTCTGAT-TC-TA
*
77014455 ATTCTGATTCTG
1 ATTCTGATTCTA
77014467 ATTCTGATTCT-
1 ATTCTGATTCTA
* *
77014478 GTTACTGATTCTG
1 ATT-CTGATTCTA
77014491 ATTCTGATTCT-
1 ATTCTGATTCTA
* * * *
77014502 GTCACCTAATTCTG
1 AT--TCTGATTCTA
*
77014516 ATTCTGATTCTG
1 ATTCTGATTCTA
*
77014528 ATTTTG-TTACTA
1 ATTCTGATT-CTA
*
77014540 ATAT-TGATTCTG
1 AT-TCTGATTCTA
77014552 ATTCTGATTCT-
1 ATTCTGATTCTA
* *
77014563 GTTACTGATTCTG
1 ATT-CTGATTCTA
*
77014576 ATTCTGATTCTC
1 ATTCTGATTCTA
* * *
77014588 ATTTTGGTTCCA
1 ATTCTGATTCTA
77014600 ATTCTGAT
1 ATTCTGAT
77014608 AATGTTTCTT
Statistics
Matches: 129, Mismatches: 23, Indels: 28
0.72 0.13 0.16
Matches are distributed among these distances:
11 9 0.07
12 95 0.74
13 23 0.18
14 2 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.49
Consensus pattern (12 bp):
ATTCTGATTCTA
Found at i:77014464 original size:6 final size:6
Alignment explanation
Indices: 77014455--77014586 Score: 139
Period size: 6 Copynumber: 21.8 Consensus size: 6
77014445 CTGTCACGTA
77014455 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * * *
77014503 -TCACCTA ATTCTG ATTCTG ATTCTG ATTTTG -TTACTA ATAT-TG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG
77014552 ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
77014587 CATTTTGGTT
Statistics
Matches: 107, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
5 8 0.07
6 90 0.84
7 7 0.07
8 2 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:77014514 original size:55 final size:56
Alignment explanation
Indices: 77014430--77014586 Score: 201
Period size: 55 Copynumber: 2.8 Consensus size: 56
77014420 TTGCATTCAC
* * *
77014430 ATTCTGTTTCTAATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTAC-TG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACATG
*
77014485 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTTTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTAC----A-TG
* *
77014546 ATTCTGATTCTGATTCTGTTA-CTGATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCT
77014587 CATTTTGGTT
Statistics
Matches: 90, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
55 49 0.54
60 19 0.21
61 22 0.24
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (56 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACATG
Found at i:77014604 original size:30 final size:30
Alignment explanation
Indices: 77014430--77014607 Score: 165
Period size: 30 Copynumber: 6.1 Consensus size: 30
77014420 TTGCATTCAC
* * * *
77014430 ATTCTGTTTCTAATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-CAATTCTG
77014461 ATTCTGATTCTGATTCTGTT----A--CTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
*
77014485 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
* *
77014516 ATTCTGATTCTGATTTTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACCAAT-TCTG
**
77014546 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
77014576 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
77014606 AT
1 AT
77014608 AATGTTTCTT
Statistics
Matches: 124, Mismatches: 13, Indels: 21
0.78 0.08 0.13
Matches are distributed among these distances:
24 22 0.18
26 1 0.01
29 2 0.02
30 55 0.44
31 44 0.35
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:77016508 original size:27 final size:27
Alignment explanation
Indices: 77016478--77016939 Score: 565
Period size: 27 Copynumber: 17.1 Consensus size: 27
77016468 AAGTACTCTT
77016478 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
77016505 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
** * * *
77016532 GATTTTTAAAATTACCATTTTACCTTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
77016559 GATTTACAGAATTATCATTTTACCCT-
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
77016585 TAGTTTATAGAATTATCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
* *
77016613 GATTTATAGAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
77016640 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
77016667 -AGTTTACAGAATTACCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
77016694 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
77016721 -AGTTTACAGAATTACCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
* *
77016748 TG-TTTACAGAATTACCATTTTATCCTC
1 -GATTTACAGAATTACCGTTTTACCCTC
** * *
77016775 GATTTGTAAAATTACCGTTTTAGCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
77016802 GATTTATAAAATTACCGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
* * ** *
77016829 AATTTATAGAATTACTATTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
*
77016856 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
77016883 -AGTTTACAAAATTACTGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
* *
77016910 GATTTATAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
77016937 GAT
1 GAT
77016940 NNNNNNNNNN
Statistics
Matches: 386, Mismatches: 39, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
26 5 0.01
27 378 0.98
28 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTC
Found at i:77022598 original size:79 final size:82
Alignment explanation
Indices: 77022456--77022644 Score: 235
Period size: 79 Copynumber: 2.4 Consensus size: 82
77022446 GTTATTCGAA
* * *
77022456 TGATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAG
1 TGATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAG
77022521 GCATTTGTGCGAGATAC
66 GCATTTGTGCGAGATAC
* * **
77022538 TGAT-TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAA
1 TGATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAA
*
77022599 GGCATTTGTGCGAGTTAC
65 GGCATTTGTGCGAGATAC
* * *
77022617 T-ATAACCGAGCTATGTCCCGAAGGCATT
1 TGATATCCGGGCTAAGTCCCGAAGGCATT
77022645 TAAACGAGTA
Statistics
Matches: 93, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 48 0.52
80 27 0.29
81 11 0.12
82 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (82 bp):
TGATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAG
GCATTTGTGCGAGATAC
Found at i:77022610 original size:40 final size:40
Alignment explanation
Indices: 77022460--77022645 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
77022450 TTCGAATGAT
* * * *
77022460 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* * *
77022501 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTGA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
77022541 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
77022580 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
77022621 A-CCGAGCTATGTCCCGAAGGCATTT
1 ATCCGGGCTAAGTCCCGAAGGCATTT
77022646 AAACGAGTAG
Statistics
Matches: 123, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 33 0.27
40 61 0.50
41 28 0.23
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:77022668 original size:79 final size:79
Alignment explanation
Indices: 77022515--77022679 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
77022505 GGACTAAGAT
* * ***
77022515 CCGAAGGCATTTGTGCGAGATACTGATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTGATACCGAGCTAAGCCCGAAGGCATTGAAACGAGTTACTAA
*
77022580 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
77022594 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGAGCTATGTCCCGAAGGCATTTAAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTGAT-ACCGAGCTAAG-CCCGAAGGCATTGAAACGAGTTA-C
** *
77022657 TATGTCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
77022673 CCGAAGG
1 CCGAAGG
77022680 TACGTGATTC
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.66
80 22 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTGATACCGAGCTAAGCCCGAAGGCATTGAAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:77023519 original size:38 final size:38
Alignment explanation
Indices: 77023476--77023552 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
77023466 ACCTTGATGA
*
77023476 ATCTATTTTCATAGGAAAGTAACGAAACGATCATATGG
1 ATCTATTTTCATAGGAAAGTAACGAAACAATCATATGG
77023514 ATCTATTTTCATAGGAAAGTAACGAAACAATCATATGG
1 ATCTATTTTCATAGGAAAGTAACGAAACAATCATATGG
77023552 A
1 A
77023553 CAGTATGTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.29
Consensus pattern (38 bp):
ATCTATTTTCATAGGAAAGTAACGAAACAATCATATGG
Found at i:77031050 original size:44 final size:45
Alignment explanation
Indices: 77030826--77031197 Score: 209
Period size: 46 Copynumber: 7.9 Consensus size: 45
77030816 TGGGTAAGGT
* * * *
77030826 GCCGATGCCATGTCCCAGACCTGGTCTTACACAGGCTAATATCTC-AA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-ACATCTCGAG
* * * **
77030873 GTCAATGCCATGTCCCAGACATGGTCTTACACTGACTATTGTCATCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTA-CATC-TCGAG
* * * *
77030922 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCTG-T
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACT-G-GCT-ACATCTC-GAG
* *
77030972 GCCAATGTCATGTCCCATACATGGTCTTACACTGGC-ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTACATCTCG-AG
*
77031018 GCCGATGCTTGTCCCAGACATGTCTTACACTGGCTTACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TACATCTCGAG
* * * * * *
77031064 GCTGATGCATCTCCCAGACATGTCTTACACTAGCT-CTTGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTAC--ATCTCGAG
* * * **
77031110 GCCGATGCCATGTCCTAGACATGGTCTTACATTGGTTCT-CATAAT-TTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGG--CTACAT-CTCGAG
* *
77031158 GCCGATGCATGTCCCAGACATGTCATACACTAGCTCACAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-ACAT
77031198 ACATGACCCA
Statistics
Matches: 259, Mismatches: 45, Indels: 43
0.75 0.13 0.12
Matches are distributed among these distances:
44 16 0.06
45 15 0.06
46 74 0.29
47 60 0.23
48 21 0.08
49 33 0.13
50 35 0.14
51 4 0.02
52 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCGAG
Found at i:77031137 original size:94 final size:96
Alignment explanation
Indices: 77030825--77031193 Score: 293
Period size: 94 Copynumber: 3.9 Consensus size: 96
77030815 ATGGGTAAGG
* * * * *
77030825 TGCCGATGCCATGTCCCAGACCTGGTCTTACACAGGC-T-A-ATATCTCAAGTCAATGCCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCACATATC-GAGGCCAATGCCATGTC
*
77030887 CCAGACATGGTCTTACACT-GACTATTGTCATCGA
65 CCAGACATGGTCTTACACTAG-CTCTTGTC-TC-A
* * * * *
77030921 GGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCTG-TGCCAATGTCATGT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCACATATC-GAGGCCAATGCCATGT
* * * * *
77030985 CCCATACATGGTCTTACACTGGCAC--ATCTCG
64 CCCAGACATGGTCTTACACTAGCTCTTGTCTCA
* * ** *
77031016 TAGCCGATG-CTTGTCCCAGACAT-GTCTTACACTGGCTT-ACATCTCGAGGCTGATG-CATCTC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCACATATCGAGGCCAATGCCATGTC
77031077 CCAGACAT-GTCTTACACTAGCTCTTGTCTCAA
65 CCAGACATGGTCTTACACTAGCTCTTGTCTC-A
* * * ** *
77031109 TGCCGATGCCATGTCCTAGACATGGTCTTACATTGG-TTCTCATAAT-TTGGCCGATG-CATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCACAT-ATCGAGGCCAATGCCATGTC
*
77031171 CCAGACAT-GTCATACACTAGCTC
65 CCAGACATGGTCTTACACTAGCTC
77031194 ACATACATGA
Statistics
Matches: 221, Mismatches: 38, Indels: 30
0.76 0.13 0.10
Matches are distributed among these distances:
90 13 0.06
91 13 0.06
92 22 0.10
93 16 0.07
94 61 0.28
95 13 0.06
96 41 0.19
97 2 0.01
98 1 0.00
99 32 0.14
100 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCACATATCGAGGCCAATGCCATGTCC
CAGACATGGTCTTACACTAGCTCTTGTCTCA
Found at i:77034609 original size:43 final size:43
Alignment explanation
Indices: 77034548--77034631 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
77034538 TACATGAATC
** * *
77034548 GCATCCATTGTGAACTCGGACCACTCAACGAGCTCGGATGCTT
1 GCATCCATAATGAACTCGGACCACTAAACGAGCTCAGATGCTT
*
77034591 GCATCCATAATGAACTCGGACCTCTAAACGAGCTCAGATGC
1 GCATCCATAATGAACTCGGACCACTAAACGAGCTCAGATGC
77034632 CACATATCTC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (43 bp):
GCATCCATAATGAACTCGGACCACTAAACGAGCTCAGATGCTT
Found at i:77036203 original size:34 final size:34
Alignment explanation
Indices: 77036160--77036227 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
77036150 GTATATAAAC
*
77036160 TCTAGTGAGTTTTGATCACCTTGTAGCGTGATCA
1 TCTAGTGAGTTTTGATCAACTTGTAGCGTGATCA
77036194 TCTAGTGAGTTTTGATCAACTTGTAGCGTGATCA
1 TCTAGTGAGTTTTGATCAACTTGTAGCGTGATCA
77036228 GTTTTCCCCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.38
Consensus pattern (34 bp):
TCTAGTGAGTTTTGATCAACTTGTAGCGTGATCA
Found at i:77036211 original size:18 final size:18
Alignment explanation
Indices: 77036160--77036211 Score: 54
Period size: 16 Copynumber: 3.0 Consensus size: 18
77036150 GTATATAAAC
77036160 TCTAGTGAGTTTTGATCA
1 TCTAGTGAGTTTTGATCA
* * **
77036178 CCTTGT-AG-CGTGATCA
1 TCTAGTGAGTTTTGATCA
77036194 TCTAGTGAGTTTTGATCA
1 TCTAGTGAGTTTTGATCA
77036212 ACTTGTAGCG
Statistics
Matches: 24, Mismatches: 8, Indels: 4
0.67 0.22 0.11
Matches are distributed among these distances:
16 10 0.42
17 4 0.17
18 10 0.42
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.40
Consensus pattern (18 bp):
TCTAGTGAGTTTTGATCA
Found at i:77037962 original size:29 final size:29
Alignment explanation
Indices: 77037928--77038022 Score: 72
Period size: 29 Copynumber: 3.2 Consensus size: 29
77037918 GAAAGACTTT
77037928 TAAGAATTCAACTGAAATTTAAAACTTGC
1 TAAGAATTCAACTGAAATTTAAAACTTGC
* ** *
77037957 TAAGAAAGT-AATTCT-ACTAA-GGAAAGACTT-T
1 TAAG-AATTCAA--CTGA--AATTTAAA-ACTTGC
77037988 TAAGAATTCAACTGAAATTTAAAACTTGC
1 TAAGAATTCAACTGAAATTTAAAACTTGC
77038017 TAAGAA
1 TAAGAA
77038023 AGTAATTCTA
Statistics
Matches: 48, Mismatches: 8, Indels: 20
0.63 0.11 0.26
Matches are distributed among these distances:
28 6 0.12
29 17 0.35
30 8 0.17
31 11 0.23
32 6 0.12
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.29
Consensus pattern (29 bp):
TAAGAATTCAACTGAAATTTAAAACTTGC
Found at i:77037967 original size:60 final size:60
Alignment explanation
Indices: 77037874--77038053 Score: 342
Period size: 60 Copynumber: 3.0 Consensus size: 60
77037864 GATTATAGAG
*
77037874 TTCAATTGAAATTTAAAACTTGCTAAGAAAGTAATTCTACTAAGGAAAGACTTTTAAGAA
1 TTCAACTGAAATTTAAAACTTGCTAAGAAAGTAATTCTACTAAGGAAAGACTTTTAAGAA
77037934 TTCAACTGAAATTTAAAACTTGCTAAGAAAGTAATTCTACTAAGGAAAGACTTTTAAGAA
1 TTCAACTGAAATTTAAAACTTGCTAAGAAAGTAATTCTACTAAGGAAAGACTTTTAAGAA
*
77037994 TTCAACTGAAATTTAAAACTTGCTAAGAAAGTAATTCTACTAAGGAAAGACTTCTAAGAA
1 TTCAACTGAAATTTAAAACTTGCTAAGAAAGTAATTCTACTAAGGAAAGACTTTTAAGAA
77038054 AATAAGAAAT
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 118 1.00
ACGTcount: A:0.45, C:0.12, G:0.13, T:0.30
Consensus pattern (60 bp):
TTCAACTGAAATTTAAAACTTGCTAAGAAAGTAATTCTACTAAGGAAAGACTTTTAAGAA
Found at i:77039867 original size:19 final size:19
Alignment explanation
Indices: 77039824--77039867 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
77039814 TTAATACAAT
* *
77039824 TATATG-GTAATAATAATG
1 TATATGTGTAATAAAAATA
*
77039842 TACATGTGTAATAAAAATA
1 TATATGTGTAATAAAAATA
77039861 TATATGT
1 TATATGT
77039868 ATTTACTTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.45, C:0.02, G:0.14, T:0.39
Consensus pattern (19 bp):
TATATGTGTAATAAAAATA
Found at i:77039907 original size:11 final size:12
Alignment explanation
Indices: 77039889--77039926 Score: 51
Period size: 11 Copynumber: 3.1 Consensus size: 12
77039879 ATTTAAGTAA
77039889 ATATATTATATT
1 ATATATTATATT
77039901 A-ATATTATATT
1 ATATATTATATT
77039912 ATTATATTATTATT
1 A-TATATTA-TATT
77039926 A
1 A
77039927 GAATTAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 11 0.48
12 1 0.04
13 6 0.26
14 5 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATATATTATATT
Found at i:77040021 original size:12 final size:12
Alignment explanation
Indices: 77039994--77040027 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
77039984 AAAACAGGGG
77039994 AGAAAAGAGAGAA
1 AGAAAA-AGAGAA
*
77040007 AGAAAAAGGGAA
1 AGAAAAAGAGAA
77040019 AGAAAAAGA
1 AGAAAAAGA
77040028 AATGAAGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:77041112 original size:6 final size:6
Alignment explanation
Indices: 77041101--77041148 Score: 62
Period size: 6 Copynumber: 8.0 Consensus size: 6
77041091 TCATAAAATG
* *
77041101 GATATT GATATT GATATT GATATT GATATC GAAATT GA-ATT GAGTATT
1 GATATT GATATT GATATT GATATT GATATT GATATT GATATT GA-TATT
77041149 TTATTGTGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
5 5 0.14
6 29 0.78
7 3 0.08
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (6 bp):
GATATT
Found at i:77045452 original size:26 final size:26
Alignment explanation
Indices: 77045369--77045470 Score: 96
Period size: 26 Copynumber: 3.9 Consensus size: 26
77045359 GAAGTGTGTT
** * *
77045369 TTACTGGTGGCTTTGCCACATATACTG
1 TTACTGGCAGCTTTGCTACA-ATACTA
* * **
77045396 TTACTGGTAGCTTTGCTGCGTTACTA
1 TTACTGGCAGCTTTGCTACAATACTA
* *
77045422 ATACTGGCAGCTTTGCTACAATATTA
1 TTACTGGCAGCTTTGCTACAATACTA
*
77045448 TTACTAGCAGCTTTGCTACAATA
1 TTACTGGCAGCTTTGCTACAATA
77045471 TTGGTGTGTT
Statistics
Matches: 61, Mismatches: 14, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
26 45 0.74
27 16 0.26
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.37
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTACAATACTA
Found at i:77045603 original size:33 final size:32
Alignment explanation
Indices: 77045566--77045636 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 32
77045556 GCATTATTAT
* *
77045566 ACTGTATTGTTACTGCATTGGGCTAAGGCCCAC
1 ACTGTACTGTT-CTGCAATGGGCTAAGGCCCAC
* * *
77045599 ACTGTTACTGTTCTGTAATGGGCTCAGGCCCAG
1 ACTG-TACTGTTCTGCAATGGGCTAAGGCCCAC
77045632 ACTGT
1 ACTGT
77045637 TACTTATCTG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
32 1 0.03
33 25 0.78
34 6 0.19
ACGTcount: A:0.20, C:0.24, G:0.25, T:0.31
Consensus pattern (32 bp):
ACTGTACTGTTCTGCAATGGGCTAAGGCCCAC
Found at i:77050940 original size:27 final size:28
Alignment explanation
Indices: 77050831--77050953 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
77050821 GAGATTGGCG
* * * *
77050831 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
77050860 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
77050888 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
77050916 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
77050943 CTGAGTGTGCG
1 CTAAGTGTGCG
77050954 GACTTAATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 23 0.27
28 47 0.55
29 15 0.18
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:77050943 original size:55 final size:57
Alignment explanation
Indices: 77050831--77050953 Score: 169
Period size: 55 Copynumber: 2.2 Consensus size: 57
77050821 GAGATTGGCG
* * * *
77050831 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
* *
77050888 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
*
77050943 CTGAGTGTGCG
1 CTAAGTGTGCG
77050954 GACTTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 23 0.39
56 21 0.36
57 15 0.25
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (57 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
Found at i:77050964 original size:27 final size:27
Alignment explanation
Indices: 77050856--77050966 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
77050846 TAAATTGTAC
** * *
77050856 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGC-AACTTGAATATAT
** *
77050884 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
77050912 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
77050939 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
77050966 A
1 A
77050967 CTTTTGAATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 31 0.41
28 44 0.59
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:77055967 original size:27 final size:25
Alignment explanation
Indices: 77055920--77055969 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
77055910 TGCTACTGTT
*
77055920 ACTGGAAAAAGGGGCTAAGGCCTTA
1 ACTGGAAAAAGAGGCTAAGGCCTTA
*
77055945 ACTGGAATAAAGAAGGCTTAGGCCT
1 ACTGGAA-AAAG-AGGCTAAGGCCT
77055970 AGATTGCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 4 0.19
27 10 0.48
ACGTcount: A:0.36, C:0.16, G:0.30, T:0.18
Consensus pattern (25 bp):
ACTGGAAAAAGAGGCTAAGGCCTTA
Found at i:77062164 original size:24 final size:24
Alignment explanation
Indices: 77062137--77062182 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
77062127 GTGAAACGAC
*
77062137 AAAGGCTGAAAAGCCGAAAAGTCG
1 AAAGGCTGAAAAGCCAAAAAGTCG
*
77062161 AAAGGCTGAAAAGTCAAAAAGT
1 AAAGGCTGAAAAGCCAAAAAGT
77062183 GGGTGGTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.50, C:0.13, G:0.26, T:0.11
Consensus pattern (24 bp):
AAAGGCTGAAAAGCCAAAAAGTCG
Found at i:77076213 original size:22 final size:22
Alignment explanation
Indices: 77076181--77076235 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
77076171 CACTAAGTCA
* *
77076181 ACAGGAAGGCTTAACATC-GTAG
1 ACAGGATGGCTTAAC-GCAGTAG
*
77076203 GCAGGATGGCTTAACGCAGTAG
1 ACAGGATGGCTTAACGCAGTAG
77076225 ACAGGATGGCT
1 ACAGGATGGCT
77076236 AAAGGCCGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.31, C:0.18, G:0.33, T:0.18
Consensus pattern (22 bp):
ACAGGATGGCTTAACGCAGTAG
Found at i:77079707 original size:22 final size:22
Alignment explanation
Indices: 77079673--77079722 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
77079663 CACTAAGTCA
* *
77079673 ACAGGACGACTCAATATCGTAG
1 ACAGGACGACTCAACATCATAG
*
77079695 ACAGGAC-AGCTCAACGTCATAG
1 ACAGGACGA-CTCAACATCATAG
77079717 ACAGGA
1 ACAGGA
77079723 TGGCTAAAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 1 0.04
22 23 0.96
ACGTcount: A:0.38, C:0.24, G:0.24, T:0.14
Consensus pattern (22 bp):
ACAGGACGACTCAACATCATAG
Found at i:77080936 original size:29 final size:29
Alignment explanation
Indices: 77080876--77081025 Score: 158
Period size: 29 Copynumber: 5.1 Consensus size: 29
77080866 GTTTTTGACT
*
77080876 ATCAACTATGAAAAGGGGATGGT-AAAAGCC
1 ATCAACTATGAAAA-GGGATGGTGACAA-CC
77080906 ATCAACTATGAAAAGGGATGGTGACAACC
1 ATCAACTATGAAAAGGGATGGTGACAACC
* * *
77080935 ATCAACTATGAAAAGAGATAGTGACGACC
1 ATCAACTATGAAAAGGGATGGTGACAACC
* **
77080964 ATCAACTTTGAAAAGGGATGGTGATGACC
1 ATCAACTATGAAAAGGGATGGTGACAACC
* * * **
77080993 ATCGATTAATGAAAAGAGATGGTTTCAACC
1 ATCAACT-ATGAAAAGGGATGGTGACAACC
77081023 ATC
1 ATC
77081026 GTTTAGCACA
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
29 66 0.65
30 36 0.35
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (29 bp):
ATCAACTATGAAAAGGGATGGTGACAACC
Found at i:77082301 original size:28 final size:26
Alignment explanation
Indices: 77082236--77082314 Score: 104
Period size: 28 Copynumber: 2.9 Consensus size: 26
77082226 ATAACAGTAT
77082236 CGTGGCAAAGCCACCAGTATCAGAATA
1 CGTGGCAAAGCCACCAGTA-CAGAATA
* *
77082263 TGTGGCTAAGCCACCAGTACAGCAAATA
1 CGTGGCAAAGCCACCAGTACAG--AATA
*
77082291 CGTGGCAAAGCCACTAGTACAGAA
1 CGTGGCAAAGCCACCAGTACAGAA
77082315 CTTCCTCCAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
26 5 0.11
27 17 0.38
28 23 0.51
ACGTcount: A:0.37, C:0.25, G:0.23, T:0.15
Consensus pattern (26 bp):
CGTGGCAAAGCCACCAGTACAGAATA
Found at i:77092095 original size:40 final size:39
Alignment explanation
Indices: 77092031--77092162 Score: 176
Period size: 40 Copynumber: 3.3 Consensus size: 39
77092021 TCTTCGGAAT
* *
77092031 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
77092070 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
77092110 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
77092150 TTAGCCCGGATAT
1 TTAGCCCGGATAT
77092163 CATTCAAATG
Statistics
Matches: 82, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
39 7 0.09
40 71 0.87
41 4 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:77100247 original size:28 final size:30
Alignment explanation
Indices: 77100202--77100272 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 30
77100192 TTGAAATCAT
*
77100202 CTTTTCCAAAA-CCAAATTTTA-AGAAAA-A
1 CTTTT-CAAAACCCAAATTTGAGAGAAAAGA
*
77100230 CTTTTCAAAACCCTAATTTGAGAGAAAAGA
1 CTTTTCAAAACCCAAATTTGAGAGAAAAGA
*
77100260 -TTTTAAAAACCCA
1 CTTTTCAAAACCCA
77100273 TTCCATAGTC
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 5 0.14
28 13 0.36
29 17 0.47
30 1 0.03
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.28
Consensus pattern (30 bp):
CTTTTCAAAACCCAAATTTGAGAGAAAAGA
Found at i:77100682 original size:27 final size:27
Alignment explanation
Indices: 77100652--77100704 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
77100642 AAAGTTAACC
*
77100652 TCAAATGGCCTTATTAAAAAATCAAAT
1 TCAAATGCCCTTATTAAAAAATCAAAT
* *
77100679 TCAAGTGCCCTTATTACAAAATCAAA
1 TCAAATGCCCTTATTAAAAAATCAAA
77100705 CCCAAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.45, C:0.19, G:0.08, T:0.28
Consensus pattern (27 bp):
TCAAATGCCCTTATTAAAAAATCAAAT
Found at i:77103681 original size:24 final size:24
Alignment explanation
Indices: 77103637--77103684 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
77103627 CACCCTAAGT
77103637 ATGACTTAGAAAGGGGCCCTCCTC
1 ATGACTTAGAAAGGGGCCCTCCTC
77103661 ATGACTTAGAAAGGGGCCCTCCTC
1 ATGACTTAGAAAGGGGCCCTCCTC
77103685 CAAAACTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (24 bp):
ATGACTTAGAAAGGGGCCCTCCTC
Found at i:77104424 original size:13 final size:13
Alignment explanation
Indices: 77104406--77104432 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
77104396 TAGTTTAATC
77104406 AGTTAATTAGTTT
1 AGTTAATTAGTTT
77104419 AGTTAATTAGTTT
1 AGTTAATTAGTTT
77104432 A
1 A
77104433 ATAAACAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (13 bp):
AGTTAATTAGTTT
Found at i:77106386 original size:27 final size:27
Alignment explanation
Indices: 77106354--77106720 Score: 189
Period size: 27 Copynumber: 13.7 Consensus size: 27
77106344 CTCAATTTGT
*
77106354 AAAATTACCAAAGTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* **
77106381 AGAATTACC-GTTTCACCCTCGATTTAC
1 AAAATTACCAAATT-ACCCTCGATTTAC
** *
77106408 AAAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
77106435 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* **** *
77106462 AGAATTACTGTTTTACCCTCGATTTAA
1 AAAATTACCAAATTACCCTCGATTTAC
** *
77106489 AAAATTACCATTTTACCCTCGA-TTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* * * *
77106515 GAAATTACTGAAA-TACCCCCAATTGT--
1 AAAATTAC-CAAATTACCCTCGATT-TAC
* * *
77106541 AAAATTACCAAAGTACCCCCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
77106568 AAAATTACCCAAA-TATCCTCGATTTGT
1 AAAATTA-CCAAATTACCCTCGATTTAC
*
77106595 AAAATTACCGAAA-TACCCTC-AGTTTGC
1 AAAATTACC-AAATTACCCTCGA-TTTAC
* ** *
77106622 AAAATTACTGAAA-TACCCTCGATCAAT
1 AAAATTAC-CAAATTACCCTCGATTTAC
* * **
77106649 AAAATTACCAAAATACCACT-GGTTTGT
1 AAAATTACCAAATTACC-CTCGATTTAC
* * * * *
77106676 AAAATTACCAAAATGCCCTTGGTTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
77106703 AAAATTACCGAAA-TACCC
1 AAAATTACC-AAATTACCC
77106721 CTGTAGGGTA
Statistics
Matches: 280, Mismatches: 43, Indels: 34
0.78 0.12 0.10
Matches are distributed among these distances:
25 4 0.01
26 43 0.15
27 218 0.78
28 15 0.05
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAATTACCCTCGATTTAC
Found at i:77106412 original size:54 final size:54
Alignment explanation
Indices: 77106367--77106512 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
77106357 ATTACCAAAG
* * *
77106367 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTAAAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
* * **
77106421 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTAAAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
*
77106475 TACCCTCGATTTAAAAAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTAAAGAATTACCATTTTACCCTCGATT
77106513 ATGAAATTAC
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 84 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTAAAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
Found at i:77106651 original size:81 final size:80
Alignment explanation
Indices: 77106516--77106721 Score: 218
Period size: 81 Copynumber: 2.5 Consensus size: 80
77106506 CTCGATTATG
* * * * ** *
77106516 AAATTACTGAAATACCCCCA-ATTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAA
1 AAATTACCGAAATACCCTCAGTTTGTAAAATTACGAAA-TACCCCCGATCAATAAAATTACCAAA
*
77106580 ATATC-CTCGATTTGTA
65 ATACCACT-GATTTGTA
* *
77106596 AAATTACCGAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATCAATAAAATTACCAAA
1 AAATTACCGAAATACCCTCAGTTTGTAAAATTAC-GAAATACCCCCGATCAATAAAATTACCAAA
*
77106661 ATACCACTGGTTTGTA
65 ATACCACTGATTTGTA
* * ** *
77106677 AAATTACCAAAATGCCCTTGGTTTATAAAATTACCGAAATACCCC
1 AAATTACCGAAATACCCTCAGTTTGTAAAATTA-CGAAATACCCC
77106722 TGTAGGGTAG
Statistics
Matches: 104, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
80 18 0.17
81 80 0.77
82 6 0.06
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (80 bp):
AAATTACCGAAATACCCTCAGTTTGTAAAATTACGAAATACCCCCGATCAATAAAATTACCAAAA
TACCACTGATTTGTA
Found at i:77106735 original size:27 final size:27
Alignment explanation
Indices: 77106705--77107768 Score: 1143
Period size: 27 Copynumber: 41.2 Consensus size: 27
77106695 TGGTTTATAA
*
77106705 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * * *
77106732 AATTACCGGAATACCCCTATAGGGTAA
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
77106759 AATTACCGGAATACCCCTATAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
77106786 AATTA-CTGGAATACCCCTGTAGGTTAG
1 AATTATC-GAAATACCCCTGTAGGGTAG
* *
77106813 AATTATCGAATTACCCTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* * *
77106840 AATAACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
77106867 AATTACCGAAATACCCCAGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
77106894 AATTATCGAAATACCCCTGTACGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
77106921 -A--AT-----TACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
77106940 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
***
77106967 AATTATCGAAATACTTTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
77106994 AATTACCGAAATACCCCAGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
77107021 AATTATCGAAATACCCCTGTACGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
77107048 -A--AT-----TACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
77107067 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
***
77107094 AATTATCGAAATACTTTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
77107121 AATTACCGAAATACCCCAGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
77107148 AATTATCGAAATACCCCTGTACGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
77107175 -A--AT-----TACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
77107194 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
***
77107221 AATTATCGAAATACTTTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
77107248 AATTACCGAAATACCCCAGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
77107275 AATTATCGAAATACCCCTGTACGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
77107302 -A--AT-----TACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
77107321 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
77107348 AATTATCGAAATACTCTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
77107375 AATTACCGAAATACCCCAGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
77107402 AATTATCGAAATACCCCTGTACGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
77107429 -A--AT-----TACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
77107448 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
***
77107475 AATTATCGAAATACTTTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
77107502 AATTACCGAAATACCCCAGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
77107529 AATTATCGAAATACCCCTGTA-CG--G
1 AATTATCGAAATACCCCTGTAGGGTAG
77107553 -----TCGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
*
77107575 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
***
77107602 AATTATCGAAATACTTTTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
77107629 AATTACCGAAATACCCCTGAAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
77107656 AATTATCGCAATACCCCTGTAAGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
77107683 AATTA-CTGAAATACCCCTGTAGGGTAG
1 AATTATC-GAAATACCCCTGTAGGGTAG
* * *
77107710 AATTA-CTAAAATACCCCTATAAGGTAG
1 AATTATC-GAAATACCCCTGTAGGGTAG
* *
77107737 AATTA-CTAAAATACCCCTGTAGGGTGG
1 AATTATC-GAAATACCCCTGTAGGGTAG
77107764 AATTA
1 AATTA
77107769 CCAAGATACC
Statistics
Matches: 881, Mismatches: 105, Indels: 102
0.81 0.10 0.09
Matches are distributed among these distances:
19 91 0.10
20 6 0.01
22 11 0.01
24 11 0.01
26 8 0.01
27 753 0.85
28 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTATCGAAATACCCCTGTAGGGTAG
Found at i:77106929 original size:19 final size:19
Alignment explanation
Indices: 77106905--77106944 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
77106895 ATTATCGAAA
77106905 TACCCCTGTACGGTAGAAT
1 TACCCCTGTACGGTAGAAT
*
77106924 TACCCCTGTAGGGTAGAAT
1 TACCCCTGTACGGTAGAAT
77106943 TA
1 TA
77106945 TCGCAATACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.28
Consensus pattern (19 bp):
TACCCCTGTACGGTAGAAT
Found at i:77106991 original size:127 final size:127
Alignment explanation
Indices: 77106722--77107688 Score: 1659
Period size: 127 Copynumber: 7.6 Consensus size: 127
77106712 GAAATACCCC
* * * * * *
77106722 TGTAGGGTAGAATTACCGGAATACCCCTA-TAGGGTAAAATTACCGGAATACCCCTATAGGGTAG
1 TGTAGGGTAGAATTACCGAAATACCCC-AGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAG
* * * *
77106786 AATTACTGGAATACCCCTGTAGGTTAGAATTATCG-AATTACCCTTGTAGGGTAGAATAACCGAA
65 -A--A-T----TACCCCTGTAGGGTAGAATTATCGCAA-TACCCCTGTAGGGTAGAATTATCGAA
**
77106850 ATACCCT
121 ATACTTT
77106857 TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAGA
1 TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAGA
77106922 ATTACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACTTT
66 ATTACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACTTT
77106984 TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAGA
1 TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAGA
77107049 ATTACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACTTT
66 ATTACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACTTT
77107111 TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAGA
1 TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAGA
77107176 ATTACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACTTT
66 ATTACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACTTT
77107238 TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAGA
1 TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAGA
*
77107303 ATTACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACTCT
66 ATTACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACTTT
77107365 TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAGA
1 TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAGA
77107430 ATTACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACTTT
66 ATTACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACTTT
*
77107492 TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTCGA
1 TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAGA
*
77107557 AATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACTTT
66 ATTACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACTTT
* * * *
77107619 TGTAGGGTAGAATTACCGAAATACCCCTGAAGGGTAGAATTATCGCAATACCCCTGTAAGGTAGA
1 TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAGA
77107684 ATTAC
66 ATTAC
77107689 TGAAATACCC
Statistics
Matches: 808, Mismatches: 22, Indels: 12
0.96 0.03 0.01
Matches are distributed among these distances:
127 746 0.92
128 2 0.00
131 1 0.00
132 1 0.00
134 2 0.00
135 56 0.07
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (127 bp):
TGTAGGGTAGAATTACCGAAATACCCCAGTAGGGTAGAATTATCGAAATACCCCTGTACGGTAGA
ATTACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTATCGAAATACTTT
Found at i:77107056 original size:19 final size:19
Alignment explanation
Indices: 77107032--77107071 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
77107022 ATTATCGAAA
77107032 TACCCCTGTACGGTAGAAT
1 TACCCCTGTACGGTAGAAT
*
77107051 TACCCCTGTAGGGTAGAAT
1 TACCCCTGTACGGTAGAAT
77107070 TA
1 TA
77107072 TCGCAATACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.28
Consensus pattern (19 bp):
TACCCCTGTACGGTAGAAT
Found at i:77107183 original size:19 final size:19
Alignment explanation
Indices: 77107159--77107198 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
77107149 ATTATCGAAA
77107159 TACCCCTGTACGGTAGAAT
1 TACCCCTGTACGGTAGAAT
*
77107178 TACCCCTGTAGGGTAGAAT
1 TACCCCTGTACGGTAGAAT
77107197 TA
1 TA
77107199 TCGCAATACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.28
Consensus pattern (19 bp):
TACCCCTGTACGGTAGAAT
Found at i:77107310 original size:19 final size:19
Alignment explanation
Indices: 77107286--77107325 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
77107276 ATTATCGAAA
77107286 TACCCCTGTACGGTAGAAT
1 TACCCCTGTACGGTAGAAT
*
77107305 TACCCCTGTAGGGTAGAAT
1 TACCCCTGTACGGTAGAAT
77107324 TA
1 TA
77107326 TCGCAATACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.28
Consensus pattern (19 bp):
TACCCCTGTACGGTAGAAT
Found at i:77107437 original size:19 final size:19
Alignment explanation
Indices: 77107413--77107452 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
77107403 ATTATCGAAA
77107413 TACCCCTGTACGGTAGAAT
1 TACCCCTGTACGGTAGAAT
*
77107432 TACCCCTGTAGGGTAGAAT
1 TACCCCTGTACGGTAGAAT
77107451 TA
1 TA
77107453 TCGCAATACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.28
Consensus pattern (19 bp):
TACCCCTGTACGGTAGAAT
Found at i:77108274 original size:22 final size:21
Alignment explanation
Indices: 77108225--77108286 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
77108215 AAGCCTTCTC
* *
77108225 ATTATGGCTTTGTGTCAACCT
1 ATTATGGCTCTGTGCCAACCT
*
77108246 ACATATGGCTCTGTGCCAACCT
1 A-TTATGGCTCTGTGCCAACCT
*
77108268 GATTATGGCTGTGTGCCAA
1 -ATTATGGCTCTGTGCCAA
77108287 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (21 bp):
ATTATGGCTCTGTGCCAACCT
Found at i:77108474 original size:27 final size:27
Alignment explanation
Indices: 77108444--77108545 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
77108434 ATTTTGTTAA
* *
77108444 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
77108471 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* *
77108498 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * **
77108525 GTGACTCTATCACAATATCTG
1 GTGGCTATGCCACAATATCTG
77108546 ATAACTGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:77108539 original size:54 final size:53
Alignment explanation
Indices: 77108444--77108545 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
77108434 ATTTTGTTAA
* * * * *
77108444 GTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATACCAC-AATATCTGTTCTG
* *
77108498 GTGGCTCTGCCACAATATCTGTATCTGGTGACTCTATCACAATATCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATACCACAATATCTG
77108546 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 8 0.20
54 33 0.80
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATCTGGTGACTATACCACAATATCTGTTCTG
Found at i:77108711 original size:6 final size:6
Alignment explanation
Indices: 77108702--77108851 Score: 141
Period size: 6 Copynumber: 24.8 Consensus size: 6
77108692 CTGTCACGTA
* *
77108702 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
77108749 ATTACTG ATTTTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
77108799 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
77108847 ATTCT
1 ATTCT
77108852 CATTTTGGTT
Statistics
Matches: 119, Mismatches: 12, Indels: 26
0.76 0.08 0.17
Matches are distributed among these distances:
5 11 0.09
6 97 0.82
7 9 0.08
8 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:77108712 original size:31 final size:30
Alignment explanation
Indices: 77108677--77108748 Score: 108
Period size: 31 Copynumber: 2.4 Consensus size: 30
77108667 TTGTATTCAC
* *
77108677 ATTCTGGTTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTCAC-TAATACTG
*
77108708 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTCACTAATACTG
77108738 ATTCTGATTCT
1 ATTCTGATTCT
77108749 ATTACTGATT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
30 18 0.47
31 20 0.53
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.47
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACTAATACTG
Found at i:77108812 original size:79 final size:79
Alignment explanation
Indices: 77108684--77108851 Score: 277
Period size: 79 Copynumber: 2.1 Consensus size: 79
77108674 CACATTCTGG
*
77108684 TTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCT
1 TTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCT
*
77108749 -ATTACTGATT-TTGA
66 GATT-CTG-TTACTGA
*
77108763 TTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTCTGATTCT
1 TTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCT
77108828 GATTCTGTTACTGA
66 GATTCTGTTACTGA
77108842 TTCTGATTCT
1 TTCTGATTCT
77108852 CATTTTGGTT
Statistics
Matches: 84, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
78 2 0.02
79 79 0.94
80 3 0.04
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (79 bp):
TTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTCT
GATTCTGTTACTGA
Found at i:77113958 original size:11 final size:12
Alignment explanation
Indices: 77113959--77114011 Score: 54
Period size: 12 Copynumber: 4.5 Consensus size: 12
77113949 TTCTTTTTTA
*
77113959 TATT-TTATTTT
1 TATTTTTATTTC
*
77113970 TATTTTTATCTC
1 TATTTTTATTTC
*
77113982 TATTTTTATTTT
1 TATTTTTATTTC
*
77113994 TATTTTCATTTC
1 TATTTTTATTTC
*
77114006 AATTTT
1 TATTTT
77114012 ATTATTTTCT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
11 4 0.12
12 30 0.88
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.74
Consensus pattern (12 bp):
TATTTTTATTTC
Found at i:77113972 original size:6 final size:6
Alignment explanation
Indices: 77113942--77114004 Score: 74
Period size: 6 Copynumber: 10.5 Consensus size: 6
77113932 TCCTCCTATC
* * *
77113942 TTTTTA TTTCT- TTTTTA TATTTTA TTTTTA TTTTTA TCTCTA TTTTTA
1 TTTTTA TTTTTA TTTTTA T-TTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
77113990 TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTT
77114005 CAATTTTATT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
5 4 0.08
6 38 0.79
7 6 0.12
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:77114010 original size:24 final size:24
Alignment explanation
Indices: 77113961--77114011 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
77113951 CTTTTTTATA
* *
77113961 TTTTATTTTTATTTTTATCTCTAT
1 TTTTATTTTTATTTTCATCTCAAT
*
77113985 TTTTATTTTTATTTTCATTTCAAT
1 TTTTATTTTTATTTTCATCTCAAT
77114009 TTT
1 TTT
77114012 ATTATTTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTTATTTTTATTTTCATCTCAAT
Found at i:77116947 original size:13 final size:13
Alignment explanation
Indices: 77116929--77116955 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
77116919 TAGTTTAATC
77116929 AGTTAATTAGTTT
1 AGTTAATTAGTTT
77116942 AGTTAATTAGTTT
1 AGTTAATTAGTTT
77116955 A
1 A
77116956 ATAAACAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (13 bp):
AGTTAATTAGTTT
Found at i:77119834 original size:21 final size:20
Alignment explanation
Indices: 77119810--77119866 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
77119800 CGATGGTAAG
77119810 TTGGGCCTCAATGGGCTAGAA
1 TTGGGCC-CAATGGGCTAGAA
* *
77119831 TTGGGCCGAATGGGCTGGAA
1 TTGGGCCCAATGGGCTAGAA
*
77119851 TTAGGCCCAATGGGCT
1 TTGGGCCCAATGGGCT
77119867 TTTGGGCCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 25 0.78
21 7 0.22
ACGTcount: A:0.21, C:0.19, G:0.37, T:0.23
Consensus pattern (20 bp):
TTGGGCCCAATGGGCTAGAA
Found at i:77120232 original size:11 final size:11
Alignment explanation
Indices: 77120216--77120280 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
77120206 ATATTGTTAT
77120216 ACATGATATGC
1 ACATGATATGC
*
77120227 ACATGATATGT
1 ACATGATATGC
*
77120238 A-ATGAGATGC
1 ACATGATATGC
77120248 ACATGATATGC
1 ACATGATATGC
* *
77120259 -TATGATATAC
1 ACATGATATGC
* *
77120269 TCATTATATGC
1 ACATGATATGC
77120280 A
1 A
77120281 TAGGTTGGGT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
10 16 0.38
11 26 0.62
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:77120263 original size:21 final size:21
Alignment explanation
Indices: 77120218--77120257 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
77120208 ATTGTTATAC
*
77120218 ATGATATGCACATGATATGTA
1 ATGAGATGCACATGATATGTA
77120239 ATGAGATGCACATGATATG
1 ATGAGATGCACATGATATG
77120258 CTATGATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.30
Consensus pattern (21 bp):
ATGAGATGCACATGATATGTA
Found at i:77128834 original size:67 final size:66
Alignment explanation
Indices: 77128646--77128853 Score: 187
Period size: 67 Copynumber: 3.2 Consensus size: 66
77128636 ATATAGTTCG
* * *
77128646 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC-CAGT--T-TATCTC
1 GCTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTCA-TCATAAATCTC
77128706 GTA
64 GTA
* * * ** *
77128709 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCATGCATGCGACCTAGCT-A-CATAAATCC
1 GCTCTCTTGTCTACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCTCATCATAAATCT
77128772 CGTA
63 CGTA
* * * *
77128776 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTT
1 GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCT-CATCATAA-ATCTC
77128841 GTA
64 GTA
77128844 GCTCTCTTGT
1 GCTCTCTTGT
77128854 ACACATGATG
Statistics
Matches: 114, Mismatches: 19, Indels: 19
0.75 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 18 0.16
64 23 0.20
66 25 0.22
67 32 0.28
68 15 0.13
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (66 bp):
GCTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTCATCATAAATCTCGT
A
Found at i:77133101 original size:40 final size:40
Alignment explanation
Indices: 77133046--77133125 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
77133036 GATGATAACT
77133046 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC
* *
77133086 GGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC
77133126 AGCTAAATCC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.26
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC
Found at i:77137810 original size:19 final size:17
Alignment explanation
Indices: 77137769--77137802 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
77137759 GCCCGTGTGA
*
77137769 GGCCCACAAGCCCATTG
1 GGCCCACAAACCCATTG
77137786 GGCCCACACAACCCATT
1 GGCCCACA-AACCCATT
77137803 TTGGCCCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.26, C:0.44, G:0.18, T:0.12
Consensus pattern (17 bp):
GGCCCACAAACCCATTG
Found at i:77138082 original size:24 final size:24
Alignment explanation
Indices: 77138055--77138105 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
77138045 ATCACTTCAC
* *
77138055 GAGCACCGCACTTATAACCAATCA
1 GAGCACCGCACCTATAACAAATCA
77138079 GAGCACCGCACCTATAACAAATCA
1 GAGCACCGCACCTATAACAAATCA
77138103 GAG
1 GAG
77138106 TATCCAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.39, C:0.31, G:0.16, T:0.14
Consensus pattern (24 bp):
GAGCACCGCACCTATAACAAATCA
Found at i:77141659 original size:27 final size:27
Alignment explanation
Indices: 77141606--77141668 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 27
77141596 TGGGGCAAAA
* *
77141606 CAGTCAATTTATCATGCAAGGGCATTT
1 CAGTCAATTTACCATACAAGGGCATTT
* * *
77141633 CAGTCATTTTACCATACAGGGGTATTT
1 CAGTCAATTTACCATACAAGGGCATTT
*
77141660 CTGT-AATTT
1 CAGTCAATTT
77141669 CACAAATCGA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
26 4 0.14
27 25 0.86
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (27 bp):
CAGTCAATTTACCATACAAGGGCATTT
Found at i:77141706 original size:27 final size:27
Alignment explanation
Indices: 77141676--77141763 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
77141666 TTTCACAAAT
* * *
77141676 CGAGGTTATTTTGGTAATTTTACACTA
1 CGAGGGTATTTCGATAATTTTACACTA
*
77141703 CGAGGGTATTTCGATAATTTTGCACTA
1 CGAGGGTATTTCGATAATTTTACACTA
* *
77141730 -TAGGGGTATTTC-AGTAATTTTGCACTA
1 CGA-GGGTATTTCGA-TAATTTTACACTA
*
77141757 CAAGGGT
1 CGAGGGT
77141764 CCTAACGGCC
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
26 2 0.04
27 49 0.94
28 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.39
Consensus pattern (27 bp):
CGAGGGTATTTCGATAATTTTACACTA
Found at i:77150245 original size:27 final size:27
Alignment explanation
Indices: 77150207--77150261 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
77150197 ACTTAATAGT
77150207 GTTTAAAGAAATTCTCTCAAACTTGGA
1 GTTTAAAGAAATTCTCTCAAACTTGGA
77150234 GTTTAAAGAAATTCTCTCAAACTTGGA
1 GTTTAAAGAAATTCTCTCAAACTTGGA
77150261 G
1 G
77150262 GCCATGGAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (27 bp):
GTTTAAAGAAATTCTCTCAAACTTGGA
Found at i:77151323 original size:27 final size:27
Alignment explanation
Indices: 77151292--77151551 Score: 200
Period size: 27 Copynumber: 9.6 Consensus size: 27
77151282 TTAGTTTACC
** * *
77151292 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
77151319 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* ***** * **
77151346 GAATTACTGTTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
***** * **
77151373 AAATTACTGTTTTACCCTCAATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *
77151400 AAATTACTAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
**
77151427 AAATTAAAAAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
77151454 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
77151481 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACCAAAATACC-CTCGATTTGTA
*
77151508 AAATTACCAAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
77151535 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
77151552 CTGATTTACA
Statistics
Matches: 190, Mismatches: 39, Indels: 8
0.80 0.16 0.03
Matches are distributed among these distances:
26 4 0.02
27 185 0.97
28 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:77151430 original size:54 final size:54
Alignment explanation
Indices: 77151385--77151662 Score: 184
Period size: 54 Copynumber: 5.1 Consensus size: 54
77151375 ATTACTGTTT
* *
77151385 TACCCTCAATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTAAAAAAA
1 TACCCTCAATTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACAAAAA
* ** * * *
77151439 TACCCTCGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACAAAAA
** *** *** *
77151493 TACCACT-GGTTTGTGAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTCAATTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACAAAAA
* * * * ***
77151547 TACCC-CTGATTTACAAAGTTA-CAGAAATACCCTTGACTTTCTAAAAATTATGGAAA
1 TACCCTC-AATTTACAAAATTACCA-AAATACCCTTG-GTTTGT-AAAATTACAAAAA
* *** ** * * *
77151603 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACAAAAA
*
77151657 CACCCT
1 TACCCT
77151663 TGTAGGATGA
Statistics
Matches: 176, Mismatches: 40, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
53 3 0.02
54 126 0.72
55 10 0.06
56 37 0.21
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCAATTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACAAAAA
Found at i:77151470 original size:81 final size:80
Alignment explanation
Indices: 77151387--77151581 Score: 257
Period size: 81 Copynumber: 2.4 Consensus size: 80
77151377 TACTGTTTTA
*
77151387 CCCTCAATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTAAAAAAATACCCTCGATTTG
1 CCCT-AATTTACAAAATTAC-AAAATACCCTTGGTTTGTAAAATTAAAAAAATACCCTCAATTTG
77151452 TAAAATTACCAAAATAC
64 TAAAATTACCAAAATAC
* ** * **
77151469 CCCTAGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTGAAATTACCAAAATACCCTCAATTTG
1 CCCTAATTTACAAAATTA-CAAAATACC-CTTGGTTTGTAAAATTAAAAAAATACCCTCAATTTG
77151533 TAAAATTACCAAAATAC
64 TAAAATTACCAAAATAC
* *
77151550 CCCTGATTTACAAAGTTACAGAAATACCCTTG
1 CCCTAATTTACAAAATTACA-AAATACCCTTG
77151582 ACTTTCTAAA
Statistics
Matches: 97, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
80 3 0.03
81 88 0.91
82 6 0.06
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
CCCTAATTTACAAAATTACAAAATACCCTTGGTTTGTAAAATTAAAAAAATACCCTCAATTTGTA
AAATTACCAAAATAC
Found at i:77151568 original size:27 final size:28
Alignment explanation
Indices: 77151387--77151578 Score: 155
Period size: 27 Copynumber: 7.1 Consensus size: 28
77151377 TACTGTTTTA
* * *
77151387 CCCTCAATTTACAAAATTACTAAAATA-
1 CCCTCGATTTATAAAATTACCAAAATAC
* * * **
77151414 CCCTTGGTTTGTAAAATTAAAAAAATA-
1 CCCTCGATTTATAAAATTACCAAAATAC
*
77151441 CCCTCGATTTGTAAAATTACCAAAATAC
1 CCCTCGATTTATAAAATTACCAAAATAC
* *
77151469 CCCTAG-TTTGTAAAATTACCAAAATAC
1 CCCTCGATTTATAAAATTACCAAAATAC
* * * *
77151496 CACT-GGTTTGTGAAATTACCAAAATA-
1 CCCTCGATTTATAAAATTACCAAAATAC
* *
77151522 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCTCGATTTATAAAATTACCAAAATAC
* *
77151550 CCCT-GATTTACAAAGTTA-CAGAAATAC
1 CCCTCGATTTATAAAATTACCA-AAATAC
77151577 CC
1 CC
77151579 TTGACTTTCT
Statistics
Matches: 138, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 6 0.04
27 123 0.89
28 9 0.07
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (28 bp):
CCCTCGATTTATAAAATTACCAAAATAC
Found at i:77151629 original size:27 final size:27
Alignment explanation
Indices: 77151590--77151641 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
77151580 TGACTTTCTA
77151590 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
77151617 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
77151642 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:77151786 original size:27 final size:27
Alignment explanation
Indices: 77151695--77151782 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
77151685 ACCCCTATTA
77151695 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
*
77151722 GGTAAAAAAACCGTAAAGCCCCTGTAG
1 GGTAAAAAGACCGTAAAGCCCCTGTAG
** *
77151749 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAAAGACCGTAA-AGCCCCTGTAG
77151776 GGTAAAA
1 GGTAAAA
77151783 TGACAAATAT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (27 bp):
GGTAAAAAGACCGTAAAGCCCCTGTAG
Found at i:77152614 original size:26 final size:26
Alignment explanation
Indices: 77152585--77152772 Score: 240
Period size: 26 Copynumber: 7.3 Consensus size: 26
77152575 GAGGAAGTGC
77152585 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
77152611 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
77152637 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
77152663 AAAAGGGCTTATGGCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
77152689 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
77152715 AAAAGGGCTT-TGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
77152740 AAAAGAGCAT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
77152763 AAAAGAGGCT
1 AAAAG-GGCT
77152773 AGGCCTCCAG
Statistics
Matches: 139, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
23 5 0.04
24 5 0.04
25 27 0.19
26 102 0.73
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:77152663 original size:52 final size:52
Alignment explanation
Indices: 77152585--77152772 Score: 294
Period size: 52 Copynumber: 3.7 Consensus size: 52
77152575 GAGGAAGTGC
77152585 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* *
77152637 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGGCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
77152689 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* *
77152740 AAAAGAGCAT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
77152773 AGGCCTCCAG
Statistics
Matches: 128, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
48 5 0.04
49 9 0.07
50 8 0.06
51 21 0.16
52 85 0.66
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:77153054 original size:31 final size:31
Alignment explanation
Indices: 77152977--77153055 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
77152967 CATTTACAGT
*
77152977 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
77153008 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
77153039 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
77153056 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:77164542 original size:47 final size:47
Alignment explanation
Indices: 77164483--77164983 Score: 930
Period size: 47 Copynumber: 10.6 Consensus size: 47
77164473 TAGTATGGCC
77164483 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
77164530 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
77164577 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
77164624 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
77164671 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
77164718 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
77164765 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
77164812 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
77164859 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
** *
77164906 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAATGCT
* *
77164955 TAATAGTCGATGTGATGAATGTGATAAGT
1 TAATGGCCGATGTGATGAATGTGA-AAGT
77164984 CCCGAAGGGC
Statistics
Matches: 446, Mismatches: 5, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
47 405 0.91
49 37 0.08
50 4 0.01
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.34
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCT
Found at i:77165157 original size:37 final size:37
Alignment explanation
Indices: 77165101--77165179 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
77165091 CCGAGCTCTA
* * *
77165101 AAGACCCAATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
* *
77165138 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
77165175 AAGAC
1 AAGAC
77165180 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
Done.