Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 239 of 279
Found at i:77890926 original size:163 final size:164
Alignment explanation
Indices: 77890586--77890935 Score: 447
Period size: 163 Copynumber: 2.1 Consensus size: 164
77890576 AAACTGAGCA
* *
77890586 ATAGCGGCGTTTTTGTTCCAAACGCCACCAAAAACTGAGCAATAGTTGCGTTTCTGATCCAAACG
1 ATAGCGGCGTTTTTGTTCCAAATGCCACCAAAAACTGAGCAATAGTCGCGTTTCTGATCCAAACG
* * * * *
77890651 CCACTAAAAACTGAGCTATAGCGGCATTTTTGTTCCAAACGCCTCTAAAAATTGAGCAATAGCGG
66 CCACTAAAAACTAAACTATAGCGACATTTTTGGTCCAAACGCCTCTAAAAACTGAGCAATAGCGG
* *
77890716 CGTTTCTGGTCCAAACACCACTAAAAACTTATCT
131 CATTTCTGGTCCAAACACCACTAAAAACTTATAT
* * * * *
77890750 ATATCGGCGTTTTTGTTCCAAATGCCACTAAAAACTGGGTAATAG-CGCCGTTTCTGGTCCAAAC
1 ATAGCGGCGTTTTTGTTCCAAATGCCACCAAAAACTGAGCAATAGTCG-CGTTTCTGATCCAAAC
**
77890814 GCCACT-AAAACTAAACTATAGCGATGTTTTTGGTCCAAACG-CTGCTAAAAACTGAGCAATAGC
65 GCCACTAAAAACTAAACTATAGCGACATTTTTGGTCCAAACGCCT-CTAAAAACTGAGCAATAGC
** * *
77890877 GGCATTTCTGGTCCAAATGCTAC-AAAAAGTTGATAT
129 GGCATTTCTGGTCCAAACACCACTAAAAACTT-ATAT
* *
77890913 ATAGCGACGTTTTTGGTCCAAAT
1 ATAGCGGCGTTTTTGTTCCAAAT
77890936 ACCGTAAAAA
Statistics
Matches: 160, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
162 9 0.06
163 90 0.56
164 61 0.38
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.27
Consensus pattern (164 bp):
ATAGCGGCGTTTTTGTTCCAAATGCCACCAAAAACTGAGCAATAGTCGCGTTTCTGATCCAAACG
CCACTAAAAACTAAACTATAGCGACATTTTTGGTCCAAACGCCTCTAAAAACTGAGCAATAGCGG
CATTTCTGGTCCAAACACCACTAAAAACTTATAT
Found at i:77891241 original size:21 final size:21
Alignment explanation
Indices: 77891217--77891291 Score: 71
Period size: 21 Copynumber: 3.5 Consensus size: 21
77891207 TGGCTTTATC
77891217 TAAACCCTAAACCTTAAATCT
1 TAAACCCTAAACCTTAAATCT
* * * *
77891238 TAAACCCTAAATTCTAAAAACA
1 TAAACCCTAAA-CCTTAAATCT
* *
77891260 TAGACCCTAAACATT-AATCT
1 TAAACCCTAAACCTTAAATCT
77891280 ATAAACCCTAAA
1 -TAAACCCTAAA
77891292 ACCCTAAACC
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
20 3 0.07
21 22 0.54
22 16 0.39
ACGTcount: A:0.48, C:0.25, G:0.01, T:0.25
Consensus pattern (21 bp):
TAAACCCTAAACCTTAAATCT
Found at i:77891426 original size:7 final size:7
Alignment explanation
Indices: 77891415--77891478 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
77891405 ATTATTTTTG
*
77891415 GGTTTAG
1 GGTTTAA
77891422 GGTTTAA
1 GGTTTAA
**
77891429 TATTTAA
1 GGTTTAA
77891436 GGTTTAA
1 GGTTTAA
* *
77891443 GGTCTAT
1 GGTTTAA
*
77891450 GGTTTAG
1 GGTTTAA
*
77891457 GGTTGTAT
1 GGTT-TAA
77891465 GGTTTAA
1 GGTTTAA
77891472 GGTTTAA
1 GGTTTAA
77891479 TAGTTATTAT
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
7 39 0.87
8 6 0.13
ACGTcount: A:0.23, C:0.02, G:0.30, T:0.45
Consensus pattern (7 bp):
GGTTTAA
Found at i:77891467 original size:15 final size:15
Alignment explanation
Indices: 77891436--77891475 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
77891426 TAATATTTAA
*
77891436 GGTTTAAGG-TCTAT
1 GGTTTAAGGTTGTAT
*
77891450 GGTTTAGGGTTGTAT
1 GGTTTAAGGTTGTAT
77891465 GGTTTAAGGTT
1 GGTTTAAGGTT
77891476 TAATAGTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 8 0.36
15 14 0.64
ACGTcount: A:0.17, C:0.03, G:0.35, T:0.45
Consensus pattern (15 bp):
GGTTTAAGGTTGTAT
Found at i:77891588 original size:22 final size:20
Alignment explanation
Indices: 77891560--77891623 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 20
77891550 TGTTTGGGGT
77891560 TTAGTGTTTAAGGTTTAAGG
1 TTAGTGTTTAAGGTTTAAGG
*
77891580 TCTTAGTGTTTATGGTTTTAAAGG
1 --TTAGTGTTTAAGG-TTT-AAGG
* *
77891604 TTAGGGTTTAGGGTTTAAGG
1 TTAGTGTTTAAGGTTTAAGG
77891624 GCTAAGGATT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
20 4 0.11
21 3 0.08
22 23 0.62
23 3 0.08
24 4 0.11
ACGTcount: A:0.22, C:0.02, G:0.31, T:0.45
Consensus pattern (20 bp):
TTAGTGTTTAAGGTTTAAGG
Found at i:77891966 original size:8 final size:7
Alignment explanation
Indices: 77891862--77891965 Score: 77
Period size: 7 Copynumber: 14.7 Consensus size: 7
77891852 TTAGGATTTC
77891862 AGGTTTA
1 AGGTTTA
*
77891869 GGGTTTA
1 AGGTTTA
*
77891876 GGGTTTA
1 AGGTTTA
**
77891883 AATTTTA
1 AGGTTTA
*
77891890 AGGTTTG
1 AGGTTTA
*
77891897 AGGTTTG
1 AGGTTTA
*
77891904 ATGTTTA
1 AGGTTTA
*
77891911 AGCTTT-
1 AGGTTTA
77891917 AGGTTTTA
1 AGG-TTTA
77891925 AGGTTT-
1 AGGTTTA
*
77891931 AGTCTTTA
1 AG-GTTTA
77891939 AGGTTTA
1 AGGTTTA
*
77891946 GGGTTTA
1 AGGTTTA
77891953 AGGTTATA
1 AGGTT-TA
77891961 AGGTT
1 AGGTT
77891966 AGAGTATTAT
Statistics
Matches: 76, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
6 4 0.05
7 60 0.79
8 12 0.16
ACGTcount: A:0.23, C:0.02, G:0.29, T:0.46
Consensus pattern (7 bp):
AGGTTTA
Found at i:77891979 original size:22 final size:22
Alignment explanation
Indices: 77891937--77891979 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
77891927 GTTTAGTCTT
*
77891937 TAAGGTTTAGGGTTTAAGGTTA
1 TAAGGTTTAGAGTTTAAGGTTA
*
77891959 TAAGG-TTAGAGTATTATGGTT
1 TAAGGTTTAGAGT-TTAAGGTT
77891980 TTAGGGTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (22 bp):
TAAGGTTTAGAGTTTAAGGTTA
Found at i:77892134 original size:7 final size:7
Alignment explanation
Indices: 77892122--77892183 Score: 58
Period size: 7 Copynumber: 8.9 Consensus size: 7
77892112 CATGGAAGTG
77892122 GGTTTAA
1 GGTTTAA
77892129 GGTTT-A
1 GGTTTAA
77892135 GGATTT-A
1 GG-TTTAA
*
77892142 GGATTTAG
1 GG-TTTAA
77892150 GGTTTAA
1 GGTTTAA
*
77892157 GGTTTAG
1 GGTTTAA
77892164 GGTATT-A
1 GGT-TTAA
77892171 GGTTTAA
1 GGTTTAA
77892178 GGTTTA
1 GGTTTA
77892184 GGGGTAAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
6 5 0.11
7 38 0.81
8 4 0.09
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (7 bp):
GGTTTAA
Found at i:77892148 original size:14 final size:13
Alignment explanation
Indices: 77892121--77892185 Score: 76
Period size: 14 Copynumber: 4.7 Consensus size: 13
77892111 GCATGGAAGT
77892121 GGGTTTAAGGTTTA
1 GGGTTT-AGGTTTA
*
77892135 GGATTTAGGATTTA
1 GGGTTTAGG-TTTA
77892149 GGGTTTAAGGTTTA
1 GGGTTT-AGGTTTA
77892163 GGGTATTAGGTTTA
1 GGGT-TTAGGTTTA
*
77892177 AGGTTTAGG
1 GGGTTTAGG
77892186 GGTAAATTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
13 8 0.18
14 32 0.71
15 5 0.11
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42
Consensus pattern (13 bp):
GGGTTTAGGTTTA
Found at i:77892186 original size:21 final size:20
Alignment explanation
Indices: 77892121--77892186 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 20
77892111 GCATGGAAGT
77892121 GGGTTTAAGGTTT-AGGATTTA
1 GGGTTT-AGGTTTAAGG-TTTA
*
77892142 GGATTTAGGGTTTAAGGTTTA
1 GGGTTTA-GGTTTAAGGTTTA
77892163 GGGTATTAGGTTTAAGGTTTA
1 GGGT-TTAGGTTTAAGGTTTA
77892184 GGG
1 GGG
77892187 GTAAATTTTG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
20 1 0.03
21 33 0.82
22 6 0.15
ACGTcount: A:0.23, C:0.00, G:0.36, T:0.41
Consensus pattern (20 bp):
GGGTTTAGGTTTAAGGTTTA
Found at i:77895724 original size:3 final size:3
Alignment explanation
Indices: 77895710--77895755 Score: 83
Period size: 3 Copynumber: 15.0 Consensus size: 3
77895700 TTATCTCAAT
77895710 TAA TAGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
77895756 GTAAATATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:77897038 original size:24 final size:24
Alignment explanation
Indices: 77897011--77897068 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
77897001 AATACTATGT
*
77897011 ATATAATATTTGTAACTAAAATTA
1 ATATTATATTTGTAACTAAAATTA
*
77897035 ATATTATATTTGTATCTAAAATTA
1 ATATTATATTTGTAACTAAAATTA
77897059 ATATTATATT
1 ATATTATATT
77897069 ATAAAATACT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (24 bp):
ATATTATATTTGTAACTAAAATTA
Found at i:77897170 original size:21 final size:20
Alignment explanation
Indices: 77897146--77897184 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
77897136 TTGTAGGGGA
*
77897146 CATTTTATATTATAGTTATTT
1 CATTTCATATTATA-TTATTT
*
77897167 CATTTCATTTTATATTAT
1 CATTTCATATTATATTAT
77897185 AAAATTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.62
Consensus pattern (20 bp):
CATTTCATATTATATTATTT
Found at i:77898637 original size:9 final size:9
Alignment explanation
Indices: 77898623--77898713 Score: 68
Period size: 9 Copynumber: 10.4 Consensus size: 9
77898613 ATATCATATA
77898623 ATAACTTAC
1 ATAACTTAC
*
77898632 ATAACTCAC
1 ATAACTTAC
*
77898641 ACAACTTAC
1 ATAACTTAC
77898650 ATAACTTA-
1 ATAACTTAC
*
77898658 ATAACTTAT
1 ATAACTTAC
77898667 ATATA-TATATC
1 ATA-ACT-TA-C
77898678 AT-A--TA-
1 ATAACTTAC
*
77898683 ATAATTTAC
1 ATAACTTAC
*
77898692 ATAACTCAC
1 ATAACTTAC
77898701 ATAACTTAC
1 ATAACTTAC
77898710 ATAA
1 ATAA
77898714 TACATAAATA
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 2 0.03
6 1 0.02
7 2 0.03
8 10 0.15
9 46 0.70
10 3 0.05
11 2 0.03
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (9 bp):
ATAACTTAC
Found at i:77900606 original size:27 final size:27
Alignment explanation
Indices: 77900576--77900818 Score: 284
Period size: 27 Copynumber: 9.1 Consensus size: 27
77900566 ATAATAAAAG
*
77900576 AAATTACTAAAATATCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
*
77900603 AAATTACTAAAATACCCTCGATTTGTG
1 AAATTACTAAAATACCCTCGATTTGTA
** * *
77900630 AAATTACCGAAACACCCTCGATTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
77900657 AAATTACTGAAATACCC-CAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
77900683 AAATTACTGAAATACTCC-CGAATTGTA
1 AAATTACTAAAATAC-CCTCGATTTGTA
*
77900710 AAATTA-TCAAAATACCCTC-AATTGTA
1 AAATTACT-AAAATACCCTCGATTTGTA
77900736 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
77900763 AAATTA-TCAAAATATCCCT-GATTTGTA
1 AAATTACT-AAAATA-CCCTCGATTTGTA
*
77900790 AAATTA-TCAAAACACCCTCGATTTGTA
1 AAATTACT-AAAATACCCTCGATTTGTA
77900817 AA
1 AA
77900819 CGATTTGTAA
Statistics
Matches: 192, Mismatches: 16, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
26 54 0.28
27 134 0.70
28 4 0.02
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:77900659 original size:54 final size:54
Alignment explanation
Indices: 77900591--77900887 Score: 282
Period size: 53 Copynumber: 5.3 Consensus size: 54
77900581 ACTAAAATAT
* *
77900591 CCTCGATTTGTAAAATTACTAAAATACCCTCGATTTGTGAAATTACCGAAACAC
1 CCTCGATTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAACAC
* * * *
77900645 CCTCGATTTATAAAATTACTGAAATACCC-CAATTTGTAAAATTACTGAAATAC
1 CCTCGATTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAACAC
* ** *
77900698 TCC-CGAATTGTAAAATTA-TCAAAATACCCTCAA-TTGTAAAATTACTAAAATAC
1 -CCTCGATTTGTAAAATTACT-AAAATACCCTCAATTTGTAAAATTACCGAAACAC
* * *
77900751 CCTCGATTTGTAAAATTA-TCAAAATATCCCT-GATTTGTAAAATTATCAAAACACC
1 CCTCGATTTGTAAAATTACT-AAAATA-CCCTCAATTTGTAAAATTACCGAAACA-C
*
77900806 CTCGATTTGTAAACGATTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCGAAACAC
1 C-C------T---CGATTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAACAC
*
77900870 CCCCGATTTGTAAAATTA
1 CCTCGATTTGTAAAATTA
77900888 TCGAAATACC
Statistics
Matches: 204, Mismatches: 20, Indels: 38
0.78 0.08 0.15
Matches are distributed among these distances:
52 3 0.01
53 83 0.41
54 67 0.33
55 2 0.01
56 1 0.00
62 1 0.00
63 1 0.00
64 6 0.03
65 39 0.19
66 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
CCTCGATTTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAACAC
Found at i:77900712 original size:53 final size:54
Alignment explanation
Indices: 77900576--77900899 Score: 293
Period size: 54 Copynumber: 5.8 Consensus size: 54
77900566 ATAATAAAAG
* * *
77900576 AAATTACTAAAATATCCTCGATTTGTAAAATTA-CTAAAATACCCTCGATTTGTG
1 AAATTACTAAAATACCCTCGATTTGTAAAATTATC-AAAATACCCTCAATTTGTA
** * * *
77900630 AAATTACCGAAACACCCTCGATTTATAAAATTA-CTGAAATACCC-CAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTATC-AAAATACCCTCAATTTGTA
* *
77900683 AAATTACTGAAATACTCC-CGAATTGTAAAATTATCAAAATACCCTCAA-TTGTA
1 AAATTACTAAAATAC-CCTCGATTTGTAAAATTATCAAAATACCCTCAATTTGTA
*
77900736 AAATTACTAAAATACCCTCGATTTGTAAAATTATCAAAATATCCCT-GATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTAAAATTATCAAAATA-CCCTCAATTTGTA
* *
77900790 AAATTA-TCAAAACACCCTCGATTTGTAAACGATTTGTAAAATTACTGAAATACCCTCAATTTGT
1 AAATTACT-AAAATACCCTCGATTTGTAAA--A--T-T---A-T-C-AAAATACCCTCAATTTGT
77900854 A
54 A
** * * *
77900855 AAATTACCGAAACACCCCCGATTTGTAAAATTATCGAAATACCCT
1 AAATTACTAAAATACCCTCGATTTGTAAAATTATCAAAATACCCT
77900900 TGTAGTGTAG
Statistics
Matches: 228, Mismatches: 22, Indels: 40
0.79 0.08 0.14
Matches are distributed among these distances:
52 2 0.01
53 84 0.37
54 89 0.39
55 1 0.00
56 2 0.01
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 1 0.00
62 1 0.00
63 2 0.01
64 5 0.02
65 37 0.16
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACTAAAATACCCTCGATTTGTAAAATTATCAAAATACCCTCAATTTGTA
Found at i:77900833 original size:38 final size:38
Alignment explanation
Indices: 77900782--77900856 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
77900772 AAATATCCCT
*
77900782 GATTTGTAAAATTA-TCAAAACACCCTCGATTTGTAAAC
1 GATTTGTAAAATTACT-AAAACACCCTCAATTTGTAAAC
* *
77900820 GATTTGTAAAATTACTGAAATACCCTCAATTTGTAAA
1 GATTTGTAAAATTACTAAAACACCCTCAATTTGTAAA
77900857 ATTACCGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 32 0.97
39 1 0.03
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (38 bp):
GATTTGTAAAATTACTAAAACACCCTCAATTTGTAAAC
Found at i:77900851 original size:27 final size:27
Alignment explanation
Indices: 77900821--77900899 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 27
77900811 TTTGTAAACG
77900821 ATTTGTAAAATTACTGAAATACCCTCA
1 ATTTGTAAAATTACTGAAATACCCTCA
* * * *
77900848 ATTTGTAAAATTACCGAAACACCCCCG
1 ATTTGTAAAATTACTGAAATACCCTCA
77900875 ATTTGTAAAATTA-TCGAAATACCCT
1 ATTTGTAAAATTACT-GAAATACCCT
77900900 TGTAGTGTAG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
ATTTGTAAAATTACTGAAATACCCTCA
Found at i:77900858 original size:65 final size:65
Alignment explanation
Indices: 77900754--77900883 Score: 183
Period size: 65 Copynumber: 2.0 Consensus size: 65
77900744 AAAATACCCT
* * *
77900754 CGATTTGTAAAATTATCAAAATATCCCTGATTTGTAAAATTATCAAAACACCCTCGATTTGTAAA
1 CGATTTGTAAAATTATCAAAATATCCCTAATTTGTAAAATTACCAAAACACCCCCGATTTGTAAA
* *
77900819 CGATTTGTAAAATTA-CTGAAATA-CCCTCAATTTGTAAAATTACCGAAACACCCCCGATTTGTA
1 CGATTTGTAAAATTATC-AAAATATCCCT-AATTTGTAAAATTACCAAAACACCCCCGATTTGTA
77900882 AA
64 AA
77900884 ATTATCGAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
64 5 0.09
65 53 0.91
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (65 bp):
CGATTTGTAAAATTATCAAAATATCCCTAATTTGTAAAATTACCAAAACACCCCCGATTTGTAAA
Found at i:77900888 original size:92 final size:92
Alignment explanation
Indices: 77900731--77900899 Score: 257
Period size: 92 Copynumber: 1.8 Consensus size: 92
77900721 ATACCCTCAA
* * * * *
77900731 TTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTATCAAAATATCCCTGATTTGTAAAATTA
1 TTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTA
77900796 TCAAAACACCCTCGATTTGTAAACGAT
66 TCAAAACACCCTCGATTTGTAAACGAT
* *
77900823 TTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCGAAACACCCCCGATTTGTAAAATTA
1 TTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTA
* *
77900888 TCGAAATACCCT
66 TCAAAACACCCT
77900900 TGTAGTGTAG
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 68 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (92 bp):
TTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAACACCCCCGATTTGTAAAATTA
TCAAAACACCCTCGATTTGTAAACGAT
Found at i:77900908 original size:27 final size:26
Alignment explanation
Indices: 77900878--77900966 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 26
77900868 ACCCCCGATT
77900878 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTA-CGAAATACCCTTGTAG
* **
77900905 TGTAGAATTAACGAAATAAGCTTGTAG
1 TGTAAAATT-ACGAAATACCCTTGTAG
* * *
77900932 TGTAAAATGACTGACATACCCTTATAG
1 TGTAAAATTAC-GAAATACCCTTGTAG
*
77900959 GGTAAAAT
1 TGTAAAAT
77900967 GACAATTTTA
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.04
27 47 0.94
28 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (26 bp):
TGTAAAATTACGAAATACCCTTGTAG
Found at i:77906506 original size:13 final size:14
Alignment explanation
Indices: 77906490--77906518 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
77906480 TTTTAAATAT
77906490 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
77906503 TTATAATGGTTTAA
1 TTATAATGGTTTAA
77906517 TT
1 TT
77906519 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:77907339 original size:43 final size:42
Alignment explanation
Indices: 77907277--77907589 Score: 269
Period size: 43 Copynumber: 7.3 Consensus size: 42
77907267 TCTGCTAAAA
*
77907277 TTAGTGGCGTTTTTTAGAAAAGCGCCAG-TAAAGGTCACT-TTCT
1 TTAGCGGCG-TTTTTAGAAAAGCGCC-GCTAAAGGTCA-TGTTCT
* *
77907320 TTAGCGGCTTTTTTGAGAAAAGCGCCGGTAAAGGTCATGTTCT
1 TTAGCGGCGTTTTT-AGAAAAGCGCCGCTAAAGGTCATGTTCT
* * *
77907363 TTAGCGGCGTTTGTATGAAAAGTGCCGCTAAAGGTCACGTTCT
1 TTAGCGGCGTTTTTA-GAAAAGCGCCGCTAAAGGTCATGTTCT
*
77907406 TTAGCGGCGTTTTTGAGAAAAGTGCCGCTAAAGGTCATGTTCT
1 TTAGCGGCGTTTTT-AGAAAAGCGCCGCTAAAGGTCATGTTCT
* * ***
77907449 TTAGCGGCGTTTGTATGAAAA-CTGCCGCTAAAGGTTACCCTCT
1 TTAGCGGCGTTTTTA-GAAAAGC-GCCGCTAAAGGTCATGTTCT
* * * * * * *
77907492 TTAACAGTGTTTTTGAGAAAAGCACCACTAAA-TTCACGTTCT
1 TTAGCGGCGTTTTT-AGAAAAGCGCCGCTAAAGGTCATGTTCT
* * * *
77907534 TTAACGACGCTTTCTCA-AAAA-CGCCGCTAAATGTCATGTTCT
1 TTAGCGGCG-TTT-TTAGAAAAGCGCCGCTAAAGGTCATGTTCT
*
77907576 TTAGCGGCATTTTT
1 TTAGCGGCGTTTTT
77907590 TTTACATAAA
Statistics
Matches: 221, Mismatches: 37, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
40 1 0.00
41 11 0.05
42 39 0.18
43 166 0.75
44 4 0.02
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (42 bp):
TTAGCGGCGTTTTTAGAAAAGCGCCGCTAAAGGTCATGTTCT
Found at i:77907427 original size:86 final size:86
Alignment explanation
Indices: 77907305--77907589 Score: 331
Period size: 86 Copynumber: 3.3 Consensus size: 86
77907295 AAAGCGCCAG
* * *
77907305 TAAAGGTCACTTTCTTTAGCGGCTTTTTTGAGAAAAGCGCCGGTAAAGGTCATGTTCTTTAGCGG
1 TAAAGGTCACGTTCTTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGG
*
77907370 CGTTTGTATGAAAAGTGCCGC
66 CGTTTGTATGAAAAATGCCGC
*
77907391 TAAAGGTCACGTTCTTTAGCGGCGTTTTTGAGAAAAGTGCCGCTAAAGGTCATGTTCTTTAGCGG
1 TAAAGGTCACGTTCTTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGG
*
77907456 CGTTTGTATGAAAACTGCCGC
66 CGTTTGTATGAAAAATGCCGC
* ** * * * * * * * * *
77907477 TAAAGGTTACCCTCTTTAACAGTGTTTTTGAGAAAAGCACCACTAAA-TTCACGTTCTTTAACGA
1 TAAAGGTCACGTTCTTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGG
* * * *
77907541 CGCTT-TCTCAAAAACGCCGC
66 CGTTTGTATGAAAAATGCCGC
* * *
77907561 TAAATGTCATGTTCTTTAGCGGCATTTTT
1 TAAAGGTCACGTTCTTTAGCGGCGTTTTT
77907590 TTTACATAAA
Statistics
Matches: 167, Mismatches: 32, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
84 31 0.19
85 17 0.10
86 119 0.71
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (86 bp):
TAAAGGTCACGTTCTTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGG
CGTTTGTATGAAAAATGCCGC
Found at i:77907949 original size:88 final size:88
Alignment explanation
Indices: 77907799--77907962 Score: 247
Period size: 88 Copynumber: 1.9 Consensus size: 88
77907789 TTTTTCAAGA
* *
77907799 TTTTAAAAATCCTAGATAAACCCCAATTTCCCTTTTGGCTCTTGAGAATGCTAACTTGAAGTTGG
1 TTTTAAAAACCCTAGATAAACCCCAATTTCCCTTTTGGCTATTGAGAATGCTAACTTGAAGTTGG
77907864 GTTTTCATGTGGTTAAGGTGGAT
66 GTTTTCATGTGGTTAAGGTGGAT
* * * * * * *
77907887 TTTTAAAAACCCTAGATAAACCCCAGTTTTCCTTTTGGCTATTGAGAGTGTTGATTTTAAGTTGG
1 TTTTAAAAACCCTAGATAAACCCCAATTTCCCTTTTGGCTATTGAGAATGCTAACTTGAAGTTGG
77907952 GTTTTCATGTG
66 GTTTTCATGTG
77907963 CTTAGGTTCT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 67 1.00
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (88 bp):
TTTTAAAAACCCTAGATAAACCCCAATTTCCCTTTTGGCTATTGAGAATGCTAACTTGAAGTTGG
GTTTTCATGTGGTTAAGGTGGAT
Found at i:77910845 original size:3 final size:3
Alignment explanation
Indices: 77910837--77910864 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
77910827 TCAAAATCTG
77910837 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
77910865 ACCTACTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:77911938 original size:42 final size:42
Alignment explanation
Indices: 77911887--77912047 Score: 261
Period size: 42 Copynumber: 3.8 Consensus size: 42
77911877 GTTTACAAAC
* *
77911887 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
77911929 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
* *
77911971 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AGG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGA-A
*
77912013 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
1 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
77912048 TTTTTTTTCT
Statistics
Matches: 112, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
41 1 0.01
42 111 0.99
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
Found at i:77912078 original size:43 final size:41
Alignment explanation
Indices: 77911889--77912142 Score: 206
Period size: 42 Copynumber: 6.1 Consensus size: 41
77911879 TTACAAACAA
* * **** *
77911889 AAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAA
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTAC
* **** *
77911931 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAA
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTAC
****
77911973 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAAGGGA-
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TT-TTTTAC
* *
77912015 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTAC
* * *
77912057 TAATCGCCGCTAAAGAACATGTTCTTTAGTGGC-ATTTTTAC
1 -AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTAC
* * *
77912098 AAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTTTTATAC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTAC
77912140 AAA
1 AAA
77912143 AACGCCACTA
Statistics
Matches: 186, Mismatches: 21, Indels: 10
0.86 0.10 0.05
Matches are distributed among these distances:
40 30 0.16
41 6 0.03
42 118 0.63
43 32 0.17
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.28
Consensus pattern (41 bp):
AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTAC
Found at i:77912225 original size:14 final size:14
Alignment explanation
Indices: 77912202--77912235 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
77912192 GCCCTCCTGT
*
77912202 AGCAAAATTTCAAA
1 AGCAACATTTCAAA
77912216 AGCAACATTTCAAA
1 AGCAACATTTCAAA
77912230 AGCAAC
1 AGCAAC
77912236 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (14 bp):
AGCAACATTTCAAA
Found at i:77912527 original size:21 final size:21
Alignment explanation
Indices: 77912459--77912529 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
77912449 TTTTGCTCTG
* *
77912459 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
77912480 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
77912501 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
77912522 CTCTGCTT
1 CTCTGCTT
77912530 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:77918003 original size:18 final size:18
Alignment explanation
Indices: 77917980--77918170 Score: 73
Period size: 18 Copynumber: 11.0 Consensus size: 18
77917970 AATTGCAATG
77917980 GTAAGTTATGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
77917998 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
77918016 GTAAGTTAAATGTAAG-T-T
1 GTAAGTT--ATGTAAGTTAT
*
77918034 GTAAGTTAT-TATGTATTAT
1 GTAAGTTATGTAAG--TTAT
77918053 GTAAG-T-TGTAAGTTAAAT
1 GTAAGTTATGTAAGTT--AT
*
77918071 GT-A-TTGTGTAAG-T-T
1 GTAAGTTATGTAAGTTAT
77918085 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
77918103 GTAAG-T-TGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
*
77918119 -TATGTATTATGTAAG-T-T
1 GTAAG--TTATGTAAGTTAT
*
77918136 GTAAGTTAT-TATGTATTAT
1 GTAAGTTATGTAAG--TTAT
77918155 GTAAG-T-TGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
77918171 TATGTATTGT
Statistics
Matches: 135, Mismatches: 7, Indels: 64
0.66 0.03 0.31
Matches are distributed among these distances:
14 6 0.04
15 11 0.08
16 18 0.13
17 9 0.07
18 66 0.49
19 21 0.16
20 4 0.03
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (18 bp):
GTAAGTTATGTAAGTTAT
Found at i:77918028 original size:11 final size:9
Alignment explanation
Indices: 77917980--77918170 Score: 73
Period size: 7 Copynumber: 22.0 Consensus size: 9
77917970 AATTGCAATG
77917980 GTAAGTTAT
1 GTAAGTTAT
77917989 GTAAGTTAT
1 GTAAGTTAT
77917998 GTAAGTTAAAT
1 GTAAGTT--AT
77918009 GT-A-TTAT
1 GTAAGTTAT
77918016 GTAAGTTAAAT
1 GTAAGTT--AT
77918027 GTAAG-T-T
1 GTAAGTTAT
77918034 GTAAGTTAT
1 GTAAGTTAT
*
77918043 -TATGTATTAT
1 GTAAG--TTAT
77918053 GTAAG-T-T
1 GTAAGTTAT
77918060 GTAAGTTAAAT
1 GTAAGTT--AT
*
77918071 GT-A-TTGT
1 GTAAGTTAT
77918078 GTAAG-T-T
1 GTAAGTTAT
77918085 GTAAGTTAAAT
1 GTAAGTT--AT
77918096 GT-A-TTAT
1 GTAAGTTAT
77918103 GTAAG-T-T
1 GTAAGTTAT
77918110 GTAAGTTAT
1 GTAAGTTAT
*
77918119 -TATGTATTAT
1 GTAAG--TTAT
77918129 GTAAG-T-T
1 GTAAGTTAT
77918136 GTAAGTTAT
1 GTAAGTTAT
*
77918145 -TATGTATTAT
1 GTAAG--TTAT
77918155 GTAAG-T-T
1 GTAAGTTAT
77918162 GTAAGTTAT
1 GTAAGTTAT
77918171 TATGTATTGT
Statistics
Matches: 140, Mismatches: 7, Indels: 70
0.65 0.03 0.32
Matches are distributed among these distances:
7 47 0.34
8 23 0.16
9 28 0.20
10 16 0.11
11 26 0.19
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:77918059 original size:26 final size:26
Alignment explanation
Indices: 77918025--77918379 Score: 502
Period size: 26 Copynumber: 14.1 Consensus size: 26
77918015 TGTAAGTTAA
77918025 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
77918051 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
77918076 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
77918101 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
77918127 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
77918153 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
77918179 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
77918205 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
77918231 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
* *
77918256 ATGTCA---GTCA---A--ATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
77918274 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
77918299 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
*
77918325 ATGTAAGTAATGTAAGTTA-AATGTATT
1 ATGTAAGT--TGTAAGTTATTATGTATT
77918352 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATT
77918378 AT
1 AT
77918380 TTAATAAAAT
Statistics
Matches: 303, Mismatches: 14, Indels: 24
0.89 0.04 0.07
Matches are distributed among these distances:
18 12 0.04
19 1 0.00
21 3 0.01
22 3 0.01
24 1 0.00
25 91 0.30
26 168 0.55
27 15 0.05
28 9 0.03
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (26 bp):
ATGTAAGTTGTAAGTTATTATGTATT
Found at i:77918303 original size:18 final size:18
Alignment explanation
Indices: 77918239--77918360 Score: 74
Period size: 18 Copynumber: 6.4 Consensus size: 18
77918229 TTGTGTAAGT
77918239 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
* *
77918257 TGTCAGTCAAATGTATTATGTAA
1 TGTAAGTTAAATG---TAT-T-A
77918280 GTTGTAAGTTAAATGTATTA
1 --TGTAAGTTAAATGTATTA
*
77918300 TGTAAGTTGTAA-GTTATTA
1 TGTAAGTT-AAATG-TATTA
*
77918319 TGT-A-TT--ATGTAAGTAA
1 TGTAAGTTAAATGT-A-TTA
77918335 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
77918353 TGTAAGTT
1 TGTAAGTT
77918361 GTAAGTTATT
Statistics
Matches: 81, Mismatches: 7, Indels: 32
0.68 0.06 0.27
Matches are distributed among these distances:
14 2 0.02
15 2 0.02
16 5 0.06
17 3 0.04
18 33 0.41
19 11 0.14
20 5 0.06
21 4 0.05
22 4 0.05
23 1 0.01
25 11 0.14
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (18 bp):
TGTAAGTTAAATGTATTA
Found at i:77918498 original size:73 final size:73
Alignment explanation
Indices: 77918415--77918639 Score: 423
Period size: 73 Copynumber: 3.1 Consensus size: 73
77918405 AACATTACTA
77918415 ATATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
1 ATATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
77918480 ATATTTTT
66 ATATTTTT
77918488 ATATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
1 ATATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
77918553 ATATTTTTT
66 ATA-TTTTT
*
77918562 TTATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
1 ATATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
77918627 ATATTTTT
66 ATATTTTT
*
77918635 TTATA
1 ATATA
77918640 TTTTATTTTA
Statistics
Matches: 150, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
73 78 0.52
74 72 0.48
ACGTcount: A:0.42, C:0.07, G:0.01, T:0.50
Consensus pattern (73 bp):
ATATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
ATATTTTT
Found at i:77918548 original size:41 final size:41
Alignment explanation
Indices: 77918501--77918622 Score: 118
Period size: 41 Copynumber: 3.2 Consensus size: 41
77918491 TAATTATTAA
77918501 TAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTT
1 TAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTT
** * * * *
77918542 TAATA-TT--CCACAT---ATTTT-TTTT-ATAAT-TATTAA
1 TAATATTTAATAAAATAACATTTTATTTTAATAGTCAATT-T
77918575 TAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTT
1 TAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTT
77918616 TAATATT
1 TAATATT
77918623 CCACATATTT
Statistics
Matches: 59, Mismatches: 12, Indels: 20
0.65 0.13 0.22
Matches are distributed among these distances:
32 3 0.05
33 9 0.15
34 6 0.10
35 5 0.08
36 3 0.05
38 3 0.05
39 5 0.08
40 6 0.10
41 16 0.27
42 3 0.05
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.51
Consensus pattern (41 bp):
TAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTT
Found at i:77918604 original size:74 final size:74
Alignment explanation
Indices: 77918416--77918636 Score: 426
Period size: 74 Copynumber: 3.0 Consensus size: 74
77918406 ACATTACTAA
77918416 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
*
77918481 TA-TTTTTA
66 TATTTTTTT
77918489 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
77918554 TATTTTTTT
66 TATTTTTTT
77918563 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
77918628 TATTTTTTT
66 TATTTTTTT
77918637 ATATTTTATT
Statistics
Matches: 146, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
73 67 0.46
74 79 0.54
ACGTcount: A:0.41, C:0.07, G:0.01, T:0.51
Consensus pattern (74 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTTT
Found at i:77918804 original size:13 final size:13
Alignment explanation
Indices: 77918786--77918856 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
77918776 ATTTATAATT
77918786 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
77918799 ATTTAAGTAACAT
1 ATTTAAGTAATAA
77918812 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
77918825 ATTTAAGTAACAT
1 ATTTAAGTAATAA
77918838 ATTTAAGTAATAA
1 ATTTAAGTAATAA
77918851 ATTTAA
1 ATTTAA
77918857 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAAGTAATAA
Found at i:77918815 original size:26 final size:26
Alignment explanation
Indices: 77918785--77918856 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
77918775 TATTTATAAT
77918785 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
77918811 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
77918837 TATTTAAGTAATAAATTTAA
1 TATTTAAGTAATAAATTTAA
77918857 ACAAATTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (26 bp):
TATTTAAGTAATAAATTTAAGTAACA
Found at i:77918883 original size:17 final size:17
Alignment explanation
Indices: 77918861--77919159 Score: 161
Period size: 17 Copynumber: 16.6 Consensus size: 17
77918851 ATTTAAACAA
77918861 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
77918878 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
77918895 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
77918912 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
* * *
77918935 ATTTAAGTAATTAAT-A
1 ATTTTAGTAAGTAATGT
* *
77918951 AATTTA--AA-CAA---
1 ATTTTAGTAAGTAATGT
77918962 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
77918979 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
77918996 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
77919013 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
* *
77919036 ATTTTAG-AAATAAATTT
1 ATTTTAGTAAGT-AATGT
*
77919053 AAACAAATTTATGTAAGTAATGT
1 -----ATTTTA-GTAAGTAATGT
77919076 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
77919093 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
*
77919110 AAACAAATTTTAGTAAGTAATTT
1 ------ATTTTAGTAAGTAATGT
77919133 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
77919150 ATTTTAGTAA
1 ATTTTAGTAA
77919160 TAAATTTAAC
Statistics
Matches: 224, Mismatches: 20, Indels: 76
0.70 0.06 0.24
Matches are distributed among these distances:
11 5 0.02
13 4 0.02
14 4 0.02
16 10 0.04
17 137 0.61
18 5 0.02
22 5 0.02
23 48 0.21
24 6 0.03
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.44
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Found at i:77918907 original size:57 final size:57
Alignment explanation
Indices: 77918828--77919168 Score: 375
Period size: 57 Copynumber: 6.5 Consensus size: 57
77918818 GTAATAAATT
** *
77918828 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
77918885 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTA--TT--
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
* * *
77918938 TAAGTAAT-TA----A-T-A-AATTTAAACA-AATTTT-AGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAA-ACAAATTTTAGTAAGTAATGTATTTTAG
77918986 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
* *
77919043 -AAATAA---A-TTTA--AACAAATTT-----A----T-GTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
*
77919083 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATTTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
77919140 TAAGTAATGTATTTTAGTAATAAATTTAA
1 TAAGTAATGTATTTTAGTAATAAATTTAA
77919169 CATTCAATCG
Statistics
Matches: 238, Mismatches: 14, Indels: 64
0.75 0.04 0.20
Matches are distributed among these distances:
40 18 0.08
41 6 0.03
44 14 0.06
45 16 0.07
46 4 0.02
47 9 0.04
48 9 0.04
49 2 0.01
50 8 0.03
52 7 0.03
53 10 0.04
54 1 0.00
55 4 0.02
56 17 0.07
57 113 0.47
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (57 bp):
TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
Found at i:77918922 original size:40 final size:40
Alignment explanation
Indices: 77918878--77918988 Score: 177
Period size: 44 Copynumber: 2.7 Consensus size: 40
77918868 TAAGTAATGT
77918878 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
*
77918918 ATTTTAGTAAGTAATGTATTTAAGTAATTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTT---T-AGTAATAAATTTAAACAA
77918962 ATTTTAGTAAGTAATGTATTTTAGTAA
1 ATTTTAGTAAGTAATGTATTTTAGTAA
77918989 GTAATGTATT
Statistics
Matches: 65, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
40 25 0.38
41 1 0.02
43 1 0.02
44 38 0.58
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (40 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
Found at i:77918964 original size:101 final size:100
Alignment explanation
Indices: 77918845--77919147 Score: 533
Period size: 101 Copynumber: 3.0 Consensus size: 100
77918835 CATATTTAAG
77918845 TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAAT
1 TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAAT
*
77918910 TTAAACAAATTTTAGTAAGTAATGTATTTAAGTAA
66 TTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
77918945 TTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
1 -TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
77919010 TTTAAACAAATTTTAGTAAGTAATGTATTTTAG--A
65 TTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
77919044 -AATAAATTTAAACAAA-TTTATGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
1 TAATAAATTTAAACAAATTTTA-GTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
*
77919107 TTTAAACAAATTTTAGTAAGTAATTTATTTTAGTAA
65 TTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
77919143 GTAAT
1 -TAAT
77919148 GTATTTTAGT
Statistics
Matches: 195, Mismatches: 2, Indels: 10
0.94 0.01 0.05
Matches are distributed among these distances:
96 4 0.02
97 90 0.46
99 2 0.01
101 99 0.51
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (100 bp):
TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAAT
TTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
Found at i:77919026 original size:40 final size:40
Alignment explanation
Indices: 77918979--77919085 Score: 189
Period size: 40 Copynumber: 2.7 Consensus size: 40
77918969 TAAGTAATGT
77918979 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
*
77919019 ATTTTAGTAAGTAATGTATTTTAGAAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
77919059 A-TTTATGTAAGTAATGTATTTTAGTAA
1 ATTTTA-GTAAGTAATGTATTTTAGTAA
77919086 GTAATGTATT
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
39 4 0.06
40 60 0.94
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (40 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
Found at i:77919139 original size:97 final size:97
Alignment explanation
Indices: 77918828--77919136 Score: 521
Period size: 97 Copynumber: 3.1 Consensus size: 97
77918818 GTAATAAATT
** *
77918828 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAAT
1 TAAGTAATGTATTTAAGAAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAAT
77918893 GTATTTTAGTAATAAATTTAAACAAATTTTAG
66 GTATTTTAGTAATAAATTTAAACAAATTTTAG
77918925 TAAGTAATGTATTTAAGTAATTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAG
1 TAAGTAATGTATTTAAG--A--AATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAG
77918990 TAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
62 TAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
*
77919026 TAAGTAATGTATTTTAGAAATAAATTTAAACAAA-TTTATGTAAGTAATGTATTTTAGTAAGTAA
1 TAAGTAATGTATTTAAGAAATAAATTTAAACAAATTTTA-GTAAGTAATGTATTTTAGTAAGTAA
77919090 TGTATTTTAGTAATAAATTTAAACAAATTTTAG
65 TGTATTTTAGTAATAAATTTAAACAAATTTTAG
*
77919123 TAAGTAATTTATTT
1 TAAGTAATGTATTT
77919137 TAGTAAGTAA
Statistics
Matches: 202, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
96 4 0.02
97 102 0.50
99 1 0.00
101 95 0.47
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (97 bp):
TAAGTAATGTATTTAAGAAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAAT
GTATTTTAGTAATAAATTTAAACAAATTTTAG
Found at i:77920518 original size:11 final size:11
Alignment explanation
Indices: 77920502--77920541 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
77920492 GATGATAATA
77920502 CATTAGTTACC
1 CATTAGTTACC
77920513 CATTAGTTACC
1 CATTAGTTACC
*
77920524 CACTAGTTACC
1 CATTAGTTACC
77920535 CA-TAGTT
1 CATTAGTT
77920542 TGAGATATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 5 0.18
11 23 0.82
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (11 bp):
CATTAGTTACC
Found at i:77921986 original size:14 final size:14
Alignment explanation
Indices: 77921967--77921996 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
77921957 CACGAACAGC
77921967 AAGATGATTAACTA
1 AAGATGATTAACTA
77921981 AAGATGATTAACTA
1 AAGATGATTAACTA
77921995 AA
1 AA
77921997 AACCTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (14 bp):
AAGATGATTAACTA
Found at i:77922225 original size:36 final size:36
Alignment explanation
Indices: 77922184--77922299 Score: 116
Period size: 36 Copynumber: 3.2 Consensus size: 36
77922174 AAAAACAAAT
77922184 TATTTCAGACTCAAAAATTATTTCAAATCCAAAGCA
1 TATTTCAGACTCAAAAATTATTTCAAATCCAAAGCA
* ** *
77922220 TATTTCAGAACAT-AACAACA-TA-ATCAAAAACAAA--T
1 TATTTCAG-AC-TCAA-AA-ATTATTTCAAATCCAAAGCA
*
77922255 TATTTCAGACTCAGAAATTATTTCAAATCCAAAGCA
1 TATTTCAGACTCAAAAATTATTTCAAATCCAAAGCA
77922291 TATTTCAGA
1 TATTTCAGA
77922300 ACATAACAAC
Statistics
Matches: 62, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
32 1 0.02
33 5 0.08
34 12 0.19
35 8 0.13
36 17 0.27
37 13 0.21
38 5 0.08
39 1 0.02
ACGTcount: A:0.47, C:0.18, G:0.06, T:0.29
Consensus pattern (36 bp):
TATTTCAGACTCAAAAATTATTTCAAATCCAAAGCA
Found at i:77922248 original size:71 final size:71
Alignment explanation
Indices: 77922132--77922332 Score: 368
Period size: 71 Copynumber: 2.8 Consensus size: 71
77922122 CCAGATCCAG
*
77922132 ATTTCAGAA-CCAAAGCATAATTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTC
1 ATTTCA-AATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTC
77922196 AAAAATT
65 AAAAATT
77922203 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
1 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
*
77922268 GAAATT
66 AAAATT
77922274 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCA
1 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCA
77922333 AATCCACTCA
Statistics
Matches: 127, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
70 2 0.02
71 125 0.98
ACGTcount: A:0.51, C:0.18, G:0.05, T:0.26
Consensus pattern (71 bp):
ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
AAAATT
Found at i:77922667 original size:22 final size:22
Alignment explanation
Indices: 77922639--77922685 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
77922629 GTGGCTGTAA
*
77922639 TAACAGAAACGCCTTACCTATT
1 TAACAGAAACGCCTTACATATT
77922661 TAACAGAAACGCCTTACATATT
1 TAACAGAAACGCCTTACATATT
77922683 TAA
1 TAA
77922686 TCGGAATAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (22 bp):
TAACAGAAACGCCTTACATATT
Found at i:77923861 original size:14 final size:14
Alignment explanation
Indices: 77923842--77923912 Score: 56
Period size: 14 Copynumber: 5.0 Consensus size: 14
77923832 ACCCCAGACT
77923842 CCTAAACCTTAAAC
1 CCTAAACCTTAAAC
*
77923856 CCTAAACACCCTAATAC
1 CCT-AA-ACCTTAA-AC
77923873 CCT-AACCTTAAA-
1 CCTAAACCTTAAAC
* * *
77923885 CCTACATCGTAAAC
1 CCTAAACCTTAAAC
*
77923899 CCTAAACTTTAAAC
1 CCTAAACCTTAAAC
77923913 TTTACACTGT
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
12 3 0.07
13 7 0.16
14 19 0.44
15 3 0.07
16 6 0.14
17 5 0.12
ACGTcount: A:0.41, C:0.35, G:0.01, T:0.23
Consensus pattern (14 bp):
CCTAAACCTTAAAC
Found at i:77924347 original size:113 final size:115
Alignment explanation
Indices: 77924149--77924354 Score: 290
Period size: 113 Copynumber: 1.8 Consensus size: 115
77924139 ATCAACAAAT
* * * *
77924149 CGCCGCTAATACTATGCTTTAGCGGCGTTTTACCGAAATCGCCACTAAATCAAGTATACATCAAG
1 CGCCGCTAATACTATGCTTTAACGGCGTTTCACCGAAAGCGCCACTAAATCAACTATACATCAAG
*
77924214 ACCAAAACGATGCGTTTTGGTTCAGATACTTGGTGGCGCTTTTATCCAAG
66 ACCAAAACGATGCGTTTTGGTTAAGATACTTGGTGGCGCTTTTATCCAAG
* * * *
77924264 CGCCGCTAATACTATGCTTTAACGGCGTTTCA-C-TAAGCGCCACTAATTCTACTATACATCGAG
1 CGCCGCTAATACTATGCTTTAACGGCGTTTCACCGAAAGCGCCACTAAATCAACTATACATCAAG
* **
77924327 GCCAAAATTATGCGTTTTGGTTAAGATA
66 ACCAAAACGATGCGTTTTGGTTAAGATA
77924355 TTTTGCTGCT
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
113 48 0.61
114 1 0.01
115 30 0.38
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (115 bp):
CGCCGCTAATACTATGCTTTAACGGCGTTTCACCGAAAGCGCCACTAAATCAACTATACATCAAG
ACCAAAACGATGCGTTTTGGTTAAGATACTTGGTGGCGCTTTTATCCAAG
Found at i:77924524 original size:208 final size:209
Alignment explanation
Indices: 77924165--77924797 Score: 741
Period size: 208 Copynumber: 2.9 Consensus size: 209
77924155 TAATACTATG
* * * * ** * *
77924165 CTTTAGCGGCGTTTTACCGAAATCGCCACTAAATCAAGTATACATCAAGACCAAAACGA-TGCGT
1 CTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTA-TATACATTAAGATCAAAAC-ACTGCGT
* * * * ** * *
77924229 TTTGGTTCAGATACTTGGTGGCGCT-TTTATCCAAGCGCCGCTAATACTATGCTTTAACGGCGTT
64 TTTTGTTAAGATATTTTGTGGCGCTAGCTA-CAAATCGCCGCTAATACTATGCTTTAACGGCGTT
77924293 TCACTAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTTAAGATATTT
128 TCACTAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTTAAGATATTT
77924358 TGCT-GCTATTAATATT
193 TGCTCGCTATTAATATT
77924374 CTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAAAACACTGCGTTT
1 CTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAAAACACTGCGTTT
*
77924439 TTGTTAAGATATTTTGCGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTTAACGGCGTTTCA
66 TTGTTAAGATATTTTGTGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTTAACGGCGTTTCA
77924504 CTAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTTAAGATATTTTGC
131 CTAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTTAAGATATTTT--
77924569 GGCGCTTCTCACAAAGCGCCGCTATTAATATT
194 ---G---CT----------CGCTATTAATATT
*
77924601 CTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAAAACGCTGCGTTT
1 CTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAAAACACTGCGTTT
* * *
77924666 TTGTTAAGATATTTTGTGGCGCTAGCTACAAATCGCCGCTAATACTATTCTTTAGCGGCGTTTGA
66 TTGTTAAGATATTTTGTGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTTAACGGCGTTTCA
* * * * * * ** * * * *
77924731 CCATATGCGCCACTAGTTCTAGTATAAATCAAGACCAAAACGATGTGTTTCGCTTAAGATAGTTT
131 -C-TAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTTAAGATATTTT
77924796 GC
194 GC
77924798 GGCGCTTCCA
Statistics
Matches: 367, Mismatches: 34, Indels: 34
0.84 0.08 0.08
Matches are distributed among these distances:
207 1 0.00
208 140 0.38
209 33 0.09
213 1 0.00
216 2 0.01
221 1 0.00
224 1 0.00
227 137 0.37
228 1 0.00
229 50 0.14
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (209 bp):
CTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAAAACACTGCGTTT
TTGTTAAGATATTTTGTGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTTAACGGCGTTTCA
CTAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTTAAGATATTTTGC
TCGCTATTAATATT
Found at i:77924687 original size:114 final size:112
Alignment explanation
Indices: 77924362--77925028 Score: 605
Period size: 113 Copynumber: 5.9 Consensus size: 112
77924352 ATATTTTGCT
* * *
77924362 GCTATTAATATTCTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAA
1 GCTATTACTATTCTTTAACGGC-GTTTACCGTAAGCGCCACTAATTTTATATACATCAAGA-CAA
* * *
77924427 AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCT-ACAAATCGCC
64 AACACTGCGTTTTGGTTAAGATATTTTGCGGCGCT-TCTCACAAAGCGCC
* * * * *
77924476 GCTAATACTATGCTTTAACGGCGTTT-CAC-TAAGCGCCACTAATTCTACTATACATCGAGGCCA
1 GCTATTACTATTCTTTAACGGCGTTTAC-CGTAAGCGCCACTAATTTTA-TATACATC-AAGACA
*
77924539 AAATTA-TGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGCGCC
63 AAA-CACTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGCGCC
* * *
77924589 GCTATTAATATTCTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAA
1 GCTATTACTATTCTTTAACGGC-GTTTACCGTAAGCGCCACTAATTTTATATACATCAAGA-CAA
* * * * *
77924654 AACGCTGCGTTTTTGTTAAGATATTTTGTGGCGCTAGCT-ACAAATCGCC
64 AACACTGCGTTTTGGTTAAGATATTTTGCGGCGCT-TCTCACAAAGCGCC
* * * * * * *
77924703 GCTAATACTATTCTTTAGCGGCGTTTGACCATATGCGCCACTAGTTCTAGTATAAATCAAGACCA
1 GCTATTACTATTCTTTAACGGCGTTT-ACCGTAAGCGCCACTAATTTTA-TATACATCAAGA-CA
* * * * * *
77924768 AAACGA-TGTGTTTCGCTTAAGATAGTTTGCGGCGCTTC-CATAAAGCGTC
63 AAAC-ACTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGCGCC
* * * * * * * * *
77924817 GCTATTACTGTACTTTAACGGCGTTTTCCTATAAACGCCACTAATTCTAAGATACCTCAAGACCA
1 GCTATTACTATTCTTTAACGGCGTTTACC-GTAAGCGCCACTAATT-TTATATACATCAAGACAA
* * * *
77924882 AACTCTGCGTTTTGGTTAAGCTATTTTGCGGCGTTTC-CAGAAAGCGCC
64 AACACTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGCGCC
* * * * * *
77924930 GCTATTACTGTCCTTTAATGGCGTTT-CGCGTAAACGCCACTACTTTTAAGATACATCAAGACGA
1 GCTATTACTATTCTTTAACGGCGTTTAC-CGTAAGCGCCACTAATTTT-ATATACATCAAGAC-A
* * *
77924994 AAACACAGCGTTTTGGTTAAGAGATTTCGCGGCGC
63 AAACACTGCGTTTTGGTTAAGATATTTTGCGGCGC
77925029 ATTGTGGTAA
Statistics
Matches: 450, Mismatches: 82, Indels: 43
0.78 0.14 0.07
Matches are distributed among these distances:
111 1 0.00
112 48 0.11
113 175 0.39
114 165 0.37
115 61 0.14
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (112 bp):
GCTATTACTATTCTTTAACGGCGTTTACCGTAAGCGCCACTAATTTTATATACATCAAGACAAAA
CACTGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGCGCC
Found at i:77924933 original size:227 final size:227
Alignment explanation
Indices: 77924362--77924914 Score: 680
Period size: 227 Copynumber: 2.4 Consensus size: 227
77924352 ATATTTTGCT
* * * * * * *
77924362 GCTATTAATATTCTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAA
1 GCTATTAATATACTTTAACGGCGGTTTACCATAAACGCCACTAATTTAAGATACATCAAGATCAA
77924427 AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTT
66 AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTT
* * * ** * *
77924492 AACGGCGTTTCACTAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTT
131 AACGGCGTTTCACTAAGCGCCACTAATTCTACTATAAATCAAGACCAAAACGATGCGTTTCGCTT
*
77924557 AAGATATTTTGCGGCGCTTCTCACAAAGCGCC
196 AAGATAGTTTGCGGCGCTTCTCACAAAGCGCC
* * * * * * *
77924589 GCTATTAATATTCTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAA
1 GCTATTAATATACTTTAACGGCGGTTTACCATAAACGCCACTAATTTAAGATACATCAAGATCAA
* * *
77924654 AACGCTGCGTTTTTGTTAAGATATTTTGTGGCGCTAGCTACAAATCGCCGCTAATACTATTCTTT
66 AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTT
* * * * * *
77924719 AGCGGCGTTTGACCATATGCGCCACTAGTTCTAGTATAAATCAAGACCAAAACGATGTGTTTCGC
131 AACGGCGTTTCA-C-TAAGCGCCACTAATTCTACTATAAATCAAGACCAAAACGATGCGTTTCGC
* *
77924784 TTAAGATAGTTTGCGGCGCTTC-CATAAAGCGTC
194 TTAAGATAGTTTGCGGCGCTTCTCACAAAGCGCC
* * * *
77924817 GCTATTACTGTACTTTAACGGC-GTTTTCCTATAAACGCCACTAATTCTAAGATACCTCAAGA-C
1 GCTATTAATATACTTTAACGGCGGTTTACC-ATAAACGCCACTAATT-TAAGATACATCAAGATC
* * * *
77924880 CAAACTCTGCGTTTTGGTTAAGCTATTTTGCGGCG
64 AAAACACTGCGTTTTTGTTAAGATATTTTGCGGCG
77924915 TTTCCAGAAA
Statistics
Matches: 287, Mismatches: 35, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
227 143 0.50
228 73 0.25
229 71 0.25
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (227 bp):
GCTATTAATATACTTTAACGGCGGTTTACCATAAACGCCACTAATTTAAGATACATCAAGATCAA
AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTT
AACGGCGTTTCACTAAGCGCCACTAATTCTACTATAAATCAAGACCAAAACGATGCGTTTCGCTT
AAGATAGTTTGCGGCGCTTCTCACAAAGCGCC
Found at i:77927368 original size:14 final size:14
Alignment explanation
Indices: 77927346--77927378 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
77927336 GTCATCTCAC
*
77927346 TATTATATTGTTAT
1 TATTTTATTGTTAT
77927360 TATTTTATTGTTAT
1 TATTTTATTGTTAT
77927374 TATTT
1 TATTT
77927379 GAATATTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (14 bp):
TATTTTATTGTTAT
Found at i:77933005 original size:16 final size:16
Alignment explanation
Indices: 77932970--77933010 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
77932960 AAAATATAGC
*
77932970 ATTATATCTATTGTGT
1 ATTATATCAATTGTGT
77932986 ATTATATCAATTGATG-
1 ATTATATCAATTG-TGT
77933002 ATTA-ATCAA
1 ATTATATCAA
77933011 AAGTGTGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 5 0.22
16 16 0.70
17 2 0.09
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.46
Consensus pattern (16 bp):
ATTATATCAATTGTGT
Found at i:77936558 original size:15 final size:14
Alignment explanation
Indices: 77936535--77936615 Score: 53
Period size: 15 Copynumber: 5.7 Consensus size: 14
77936525 TTCATTTAGC
*
77936535 TTTAAATATTATTCA
1 TTTATATATTATT-A
77936550 TTTATATA-TATTA
1 TTTATATATTATTA
*
77936563 TTGT-TATCACTATTA
1 TT-TATAT-ATTATTA
*
77936578 TTTTTATATTATTA
1 TTTATATATTATTA
77936592 -TTATAT-TATATTTA
1 TTTATATAT-TA-TTA
*
77936606 GTTATATATT
1 TTTATATATT
77936616 TTAAATATCT
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
12 1 0.02
13 13 0.24
14 16 0.29
15 24 0.44
16 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (14 bp):
TTTATATATTATTA
Found at i:77936595 original size:17 final size:19
Alignment explanation
Indices: 77936573--77936617 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 19
77936563 TTGTTATCAC
77936573 TATTATTTTTATA-TTA-T
1 TATTATTTTTATATTTAGT
*
77936590 TATTA-TATTATATTTAGT
1 TATTATTTTTATATTTAGT
77936608 TATATATTTT
1 TAT-TATTTT
77936618 AAATATCTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
16 6 0.27
17 8 0.36
18 4 0.18
19 2 0.09
20 2 0.09
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
TATTATTTTTATATTTAGT
Found at i:77936667 original size:3 final size:3
Alignment explanation
Indices: 77936659--77936700 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
77936649 TATATATTTT
* *
77936659 TTA TTA TTA GTA TTA TTA TTA -TA TTCA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
77936701 GTACTAGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:77936676 original size:12 final size:11
Alignment explanation
Indices: 77936659--77936700 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 11
77936649 TATATATTTT
77936659 TTATTATTAGTA
1 TTATTATTA-TA
77936671 TTATTATTATA
1 TTATTATTATA
77936682 TTCATTATTAATA
1 TT-ATTATT-ATA
77936695 TTATTA
1 TTATTA
77936701 GTACTAGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 4 0.14
12 19 0.68
13 5 0.18
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (11 bp):
TTATTATTATA
Found at i:77936828 original size:21 final size:21
Alignment explanation
Indices: 77936804--77936968 Score: 89
Period size: 21 Copynumber: 7.8 Consensus size: 21
77936794 TCATTTTTAA
*
77936804 TATATATATTGTATATGTTTT
1 TATATATATTGTATATATTTT
77936825 TATATATATTATGTATATATTTT
1 TATATATA-T-TGTATATATTTT
77936848 TA-ATATTATTAGT-TATATTTT
1 TATATA-TATT-GTATATATTTT
* * *
77936869 TTTATACTATTTCGTGTATATATT
1 TATATA-TA-TT-GTATATATTTT
*
77936893 TATAT-TATCCT-TAT-TATTAT
1 TATATATAT--TGTATATATTTT
*
77936913 TAT-TAATATTAGTATAT-GTTT
1 TATAT-ATATT-GTATATATTTT
*
77936934 TAT-TATA-TGTATATATCTT
1 TATATATATTGTATATATTTT
77936953 TA-ATATATATGTATAT
1 TATATATAT-TGTATAT
77936969 CCTTATGTAA
Statistics
Matches: 113, Mismatches: 13, Indels: 36
0.70 0.08 0.22
Matches are distributed among these distances:
18 6 0.05
19 11 0.10
20 10 0.09
21 40 0.35
22 15 0.13
23 20 0.18
24 11 0.10
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.59
Consensus pattern (21 bp):
TATATATATTGTATATATTTT
Found at i:77936829 original size:23 final size:23
Alignment explanation
Indices: 77936796--77936968 Score: 92
Period size: 20 Copynumber: 8.0 Consensus size: 23
77936786 CATTATTATC
77936796 ATTTTTAATATATATATTGTATAT
1 ATTTTT-ATATATATATTGTATAT
*
77936820 GTTTTTATATATAT-TATGTATAT
1 ATTTTTATATATATAT-TGTATAT
77936843 ATTTTTA-ATAT-TATTAGT-TAT
1 ATTTTTATATATATATT-GTATAT
* *
77936864 ATTTTTTTATACTAT-TTCGTGTAT
1 ATTTTTATATA-TATATT-GTATAT
* **
77936888 ATATTTATAT-TATCCT-TAT-T
1 ATTTTTATATATATATTGTATAT
*
77936908 ATTATTAT-TA-ATA-T-TAGTAT
1 ATTTTTATATATATATTGTA-TAT
*
77936928 ATGTTT-TAT-TATA-TGTATAT
1 ATTTTTATATATATATTGTATAT
*
77936948 ATCTTTA-ATATATA-TGTATAT
1 ATTTTTATATATATATTGTATAT
77936969 CCTTATGTAA
Statistics
Matches: 119, Mismatches: 14, Indels: 35
0.71 0.08 0.21
Matches are distributed among these distances:
18 3 0.03
19 5 0.04
20 27 0.23
21 26 0.22
22 14 0.12
23 27 0.23
24 17 0.14
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.59
Consensus pattern (23 bp):
ATTTTTATATATATATTGTATAT
Found at i:77936850 original size:47 final size:47
Alignment explanation
Indices: 77936796--77936893 Score: 121
Period size: 47 Copynumber: 2.1 Consensus size: 47
77936786 CATTATTATC
*
77936796 ATTTTTAATA-TATATATTGTATATGTTTTTATA-TATATT-ATGTATAT
1 ATTTTTAATATTAT-TAGT-TATATGTTTTTATACTAT-TTCATGTATAT
* *
77936843 ATTTTTAATATTATTAGTTATATTTTTTTATACTATTTCGTGTATAT
1 ATTTTTAATATTATTAGTTATATGTTTTTATACTATTTCATGTATAT
77936890 ATTT
1 ATTT
77936894 ATATTATCCT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
46 15 0.33
47 27 0.60
48 3 0.07
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (47 bp):
ATTTTTAATATTATTAGTTATATGTTTTTATACTATTTCATGTATAT
Found at i:77936917 original size:217 final size:226
Alignment explanation
Indices: 77936686--77937099 Score: 489
Period size: 217 Copynumber: 1.9 Consensus size: 226
77936676 ATTATATTCA
*
77936686 TTATTAATATTATTAGTACTAGTAT-TGATTTTCACTTAATAT-T-TATATATGT-ATATACATG
1 TTATTAATATTATTAATACTAGTATATG-TTTT-A-TT-ATATGTATATATATGTAATATACATG
* * * *
77936747 TACATATTTATGTAGT-GTATTAATAGTTTTTATTTTTCACATTATTATCATTTT-TAATA-TAT
62 TACATACTTATGTAATAGTATTAATAG-TTGT-TTTTTAACATTATTATCATTTTCTAATAGTAT
* * * *
77936809 ATA-T-TGTATATGTTTTTATA-TATATTATGTATATATTTTTAATAT-TATTA-GT-TATAT-T
125 ATACTATGTAAATATTTTAATACTATATTATGTATACATTTTTAATATATATTACGTATATATAT
77936867 -TTTTTATACTATTTCGTGTATATATTTATATTATCC
190 CTTTTTATACTATTTCGTGTATATATTTATATTATCC
* * * * * *
77936903 TTATTATTATTATTAATATTAGTATATGTTTTATTATATGTATATATCTTTAATATATATGTATA
1 TTATTAATATTATTAATACTAGTATATGTTTTATTATATGTATATATATGTAATATACATGTACA
* * *
77936968 TCCTTATGTAATATTATTAATAGTTGTTTTTTAACATTATTATTATTTTCTAATATGTATATACT
66 TACTTATGTAATAGTATTAATAGTTGTTTTTTAACATTATTATCATTTTCTAATA-GTATATACT
*
77937033 ATGTAAATATTTTAATACTATATTATGTATACATTTTTTATATATATTACGTATATATATCTTTT
130 ATGTAAATATTTTAATACTATATTATGTATACATTTTTAATATATATTACGTATATATATCTTTT
77937098 TA
195 TA
77937100 ATATTGTATT
Statistics
Matches: 162, Mismatches: 19, Indels: 22
0.80 0.09 0.11
Matches are distributed among these distances:
214 4 0.02
215 3 0.02
216 28 0.17
217 54 0.33
218 11 0.07
219 6 0.04
220 1 0.01
221 13 0.08
222 23 0.14
223 5 0.03
224 2 0.01
225 5 0.03
226 1 0.01
227 6 0.04
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (226 bp):
TTATTAATATTATTAATACTAGTATATGTTTTATTATATGTATATATATGTAATATACATGTACA
TACTTATGTAATAGTATTAATAGTTGTTTTTTAACATTATTATCATTTTCTAATAGTATATACTA
TGTAAATATTTTAATACTATATTATGTATACATTTTTAATATATATTACGTATATATATCTTTTT
ATACTATTTCGTGTATATATTTATATTATCC
Found at i:77937068 original size:24 final size:24
Alignment explanation
Indices: 77937025--77937087 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
77937015 TTCTAATATG
*
77937025 TATATACTATGTA-A-ATATTTTAA
1 TATATATTATGTATACAT-TTTTAA
*
77937048 TACTATATTATGTATACATTTTTTA
1 TA-TATATTATGTATACATTTTTAA
*
77937073 TATATATTACGTATA
1 TATATATTATGTATA
77937088 TATATCTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 2 0.06
24 22 0.65
25 8 0.24
26 2 0.06
ACGTcount: A:0.38, C:0.06, G:0.05, T:0.51
Consensus pattern (24 bp):
TATATATTATGTATACATTTTTAA
Found at i:77937228 original size:25 final size:25
Alignment explanation
Indices: 77937197--77937244 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
77937187 TTTTAAATAA
**
77937197 CTATATTATGTATGTATTTTTAACG
1 CTATATTATGTACATATTTTTAACG
77937222 CTATATTATGTACATATTTTTAA
1 CTATATTATGTACATATTTTTAA
77937245 TACTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.52
Consensus pattern (25 bp):
CTATATTATGTACATATTTTTAACG
Found at i:77937250 original size:25 final size:25
Alignment explanation
Indices: 77937186--77937250 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 25
77937176 TATATAATTT
**
77937186 TTTTTAAATAACTATATTATGTATGTA
1 TTTTT-AAT-ACTATATTATGTACATA
**
77937213 TTTTTAACGCTATATTATGTACATA
1 TTTTTAATACTATATTATGTACATA
77937238 TTTTTAATACTAT
1 TTTTTAATACTAT
77937251 GTATACACTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
25 25 0.78
26 2 0.06
27 5 0.16
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.52
Consensus pattern (25 bp):
TTTTTAATACTATATTATGTACATA
Found at i:77946560 original size:3 final size:3
Alignment explanation
Indices: 77946547--77946619 Score: 53
Period size: 3 Copynumber: 25.0 Consensus size: 3
77946537 ATATAGATAT
* * * *
77946547 TTA TTA TTTA TTA TTA TT- CTA TTA -AA TTA TAA TTT TTA TTA TTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
77946591 -AA TTA TGA TTA TTA TGA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
77946620 AAAATAAATT
Statistics
Matches: 52, Mismatches: 14, Indels: 8
0.70 0.19 0.11
Matches are distributed among these distances:
2 3 0.06
3 46 0.88
4 3 0.06
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:77946591 original size:20 final size:20
Alignment explanation
Indices: 77946556--77946610 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
77946546 TTTATTATTT
77946556 ATTATTATTCTATTAAATTATA
1 ATTATTA-T-TATTAAATTATA
* *
77946578 ATTTTTATTATTAAATTATG
1 ATTATTATTATTAAATTATA
*
77946598 ATTATTATGATTA
1 ATTATTATTATTA
77946611 TTATTATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 22 0.76
21 1 0.03
22 6 0.21
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (20 bp):
ATTATTATTATTAAATTATA
Found at i:77946595 original size:25 final size:26
Alignment explanation
Indices: 77946547--77946634 Score: 72
Period size: 26 Copynumber: 3.3 Consensus size: 26
77946537 ATATAGATAT
* **
77946547 TTATTATTTATTATTATTCTATTAAA
1 TTATAATTTATTATTATTAAATTAAA
*
77946573 TTATAATTT-TTATTATTAAATTATGA
1 TTATAATTTATTATTATTAAATTA-AA
* *
77946599 TTATTATGATTATTATTATTAAAAATAAA
1 TTATAAT--TTATTATTATT-AAATTAAA
77946628 TTA-AATT
1 TTATAATT
77946635 AAAGACAAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
25 12 0.24
26 16 0.33
28 4 0.08
29 12 0.24
30 5 0.10
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (26 bp):
TTATAATTTATTATTATTAAATTAAA
Found at i:77946630 original size:29 final size:29
Alignment explanation
Indices: 77946572--77946626 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
77946562 ATTCTATTAA
* * *
77946572 ATTATAATTTTTATTATTAAATTATGATT
1 ATTATAATTATTATTATTAAAATATAATT
*
77946601 ATTATGATTATTATTATTAAAA-ATAA
1 ATTATAATTATTATTATTAAAATATAA
77946627 ATTAAATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 3 0.14
29 19 0.86
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (29 bp):
ATTATAATTATTATTATTAAAATATAATT
Found at i:77946990 original size:23 final size:23
Alignment explanation
Indices: 77946964--77947008 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
77946954 AGAACATTTC
77946964 GAAACAGAACAGG-AAAGAAAAAG
1 GAAACA-AACAGGAAAAGAAAAAG
* *
77946987 GAAAGAAAGAGGAAAAGAAAAA
1 GAAACAAACAGGAAAAGAAAAA
77947009 TTAAGGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.69, C:0.04, G:0.27, T:0.00
Consensus pattern (23 bp):
GAAACAAACAGGAAAAGAAAAAG
Found at i:77947005 original size:12 final size:11
Alignment explanation
Indices: 77946974--77947008 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
77946964 GAAACAGAAC
77946974 AGGAAAGAAAA
1 AGGAAAGAAAA
*
77946985 AGGAAAGAAAG
1 AGGAAAGAAAA
77946996 AGGAAAAGAAAA
1 AGG-AAAGAAAA
77947008 A
1 A
77947009 TTAAGGTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 13 0.62
12 8 0.38
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (11 bp):
AGGAAAGAAAA
Found at i:77948004 original size:6 final size:6
Alignment explanation
Indices: 77947993--77948022 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
77947983 TGCCTACTAT
77947993 TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC
1 TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC
77948023 CGATTCGACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.50
Consensus pattern (6 bp):
TGTTAC
Found at i:77948103 original size:6 final size:6
Alignment explanation
Indices: 77948092--77948143 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
77948082 GTGTGTTGAA
* *
77948092 TACTGT TACTGT TACTGT TACTGC TACTGC TA-TCGT TACTGAT TACTTGT
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACT-GT TACTG-T TAC-TGT
77948142 TA
1 TA
77948144 GATATTGTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
5 1 0.03
6 29 0.73
7 8 0.20
8 2 0.05
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
TACTGT
Found at i:77948887 original size:16 final size:15
Alignment explanation
Indices: 77948862--77948898 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
77948852 GTCGAAATTT
77948862 ATAAAAAAATAAAAA
1 ATAAAAAAATAAAAA
77948877 ATAATAAAAAT-AAAA
1 ATAA-AAAAATAAAAA
77948892 ATAAAAA
1 ATAAAAA
77948899 TTTGGAGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 3 0.14
15 12 0.57
16 6 0.29
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (15 bp):
ATAAAAAAATAAAAA
Found at i:77952543 original size:76 final size:75
Alignment explanation
Indices: 77952324--77952546 Score: 356
Period size: 75 Copynumber: 3.0 Consensus size: 75
77952314 TTATTCTAAT
* * *
77952324 AATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGAGACACGCTGAGGTATTTTTAATTTCTAT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCTAT
77952389 TTTTCAAAAA
66 TTTTCAAAAA
*
77952399 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTTAATTTCTAT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCTAT
77952464 TTTTCAAAAA
66 TTTTCAAAAA
* * * * *
77952474 AATCAACTCATATTACGAGAGGTGAGTTGAGCCGCGGGTCCACGTTGAGGTATTTTCAATTTCTG
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT-CACGCTGAGGTATTTTTAATTTCTA
77952539 TTTTTCAA
65 TTTTTCAA
77952547 TTTCTACTTT
Statistics
Matches: 137, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
75 107 0.78
76 30 0.22
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (75 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACGCTGAGGTATTTTTAATTTCTAT
TTTTCAAAAA
Found at i:77952557 original size:14 final size:14
Alignment explanation
Indices: 77952526--77952560 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
77952516 CGTTGAGGTA
**
77952526 TTTTCAATTTCTGT
1 TTTTCAATTTCTAC
77952540 TTTTCAATTTCTAC
1 TTTTCAATTTCTAC
77952554 TTTTCAA
1 TTTTCAA
77952561 AAATCAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.17, G:0.03, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTAC
Found at i:77952653 original size:13 final size:14
Alignment explanation
Indices: 77952615--77952658 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
77952605 TGCCAAGGTA
*
77952615 TTTTCAAATTCTAT
1 TTTTCAAATTCTGT
77952629 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
77952643 TTTT-AATTTCTGT
1 TTTTCAAATTCTGT
77952656 TTT
1 TTT
77952659 AAAAAAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
13 11 0.39
14 17 0.61
ACGTcount: A:0.20, C:0.11, G:0.05, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:77952723 original size:102 final size:103
Alignment explanation
Indices: 77952526--77952746 Score: 288
Period size: 103 Copynumber: 2.2 Consensus size: 103
77952516 CGTTGAGGTA
* * * *
77952526 TTTTCAATTTCTGTTTTTCAATTTCTACTTTTCAAAAATCAACTCATATTGCAAGATGTGAGTTG
1 TTTTCAAATTCTGTTTTTCAATTTCTACTTTTAAAAAAACAACTCATATTGCAAGAGGTGAGTTG
**
77952591 AGCCTTGGGTCACATGCCAAGGTATTTTCAAATTCTAT
66 AGCCTTCAGTCACATGCCAAGGTATTTTCAAATTCTAT
* *
77952629 TTTTCAAATTCTGTTTTT-AATTTCT-GTTTTAAAAAAAAACAACTCATATTGCGAGAGGTGAGT
1 TTTTCAAATTCTGTTTTTCAATTTCTACTTTT--AAAAAAACAACTCATATTGCAAGAGGTGAGT
* * *
77952692 TGAGCC-TCAGTCACATGCTAAGGTATTTTCAATTTCTGT
64 TGAGCCTTCAGTCACATGCCAAGGTATTTTCAAATTCTAT
77952731 TTTTC-AATTCATGTTT
1 TTTTCAAATTC-TGTTT
77952747 CAACAATCAA
Statistics
Matches: 104, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
101 9 0.09
102 45 0.43
103 50 0.48
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.43
Consensus pattern (103 bp):
TTTTCAAATTCTGTTTTTCAATTTCTACTTTTAAAAAAACAACTCATATTGCAAGAGGTGAGTTG
AGCCTTCAGTCACATGCCAAGGTATTTTCAAATTCTAT
Found at i:77952774 original size:86 final size:86
Alignment explanation
Indices: 77952629--77952906 Score: 346
Period size: 86 Copynumber: 3.2 Consensus size: 86
77952619 CAAATTCTAT
* * * *
77952629 TTTTCAAATTCTGTTTTTAATTTCTGTTTTAAAAAAAAACAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTGTTTTTAATGTCTGTTTT--CAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* *
77952694 AGCCTCAGTCACATGCTAAGGTA
64 AGCCTCGGTCACATGCCAAGGTA
*
77952717 TTTTCAATTTCTGTTTTTCAAT-TCATG-TTTCAACAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTGTTTTT-AATGTC-TGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * *
77952780 AGCCCCGGGCTACATGCCGAGGTA
64 AGCCTCGGTC-ACATGCCAAGGTA
* *
77952804 -TTTCAATTTCTATTTTTAATGTCTGTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCAATTTCTGTTTTTAATGTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* *
77952868 CCTTGGCTCACACGCCAAGGTA
66 CCTCGG-TCACATGCCAAGGTA
*
77952890 TTTTCAATTCCTGTTTT
1 TTTTCAATTTCTGTTTT
77952907 CGAAAATCAA
Statistics
Matches: 164, Mismatches: 19, Indels: 15
0.83 0.10 0.08
Matches are distributed among these distances:
85 5 0.03
86 106 0.65
87 26 0.16
88 22 0.13
89 5 0.03
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (86 bp):
TTTTCAATTTCTGTTTTTAATGTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCGGTCACATGCCAAGGTA
Found at i:77952941 original size:74 final size:74
Alignment explanation
Indices: 77952826--77952970 Score: 218
Period size: 74 Copynumber: 2.0 Consensus size: 74
77952816 TTTTTAATGT
* * * *
77952826 CTGTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCCAAGGTAT
1 CTGTTTTCAAAAATCAACTCATATTGCGAGAGATGAATTGAGCCTTGGCTCACACACCAAGGTAT
77952891 TTTCAATTC
66 TTTCAATTC
* * * *
77952900 CTGTTTTCGAAAATCAACTCATATTGCGAGAGATGAATTGAGCCTTGGGTCACATACCGAGGTAT
1 CTGTTTTCAAAAATCAACTCATATTGCGAGAGATGAATTGAGCCTTGGCTCACACACCAAGGTAT
77952965 TTTCAA
66 TTTCAA
77952971 ATTCTACTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
74 63 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (74 bp):
CTGTTTTCAAAAATCAACTCATATTGCGAGAGATGAATTGAGCCTTGGCTCACACACCAAGGTAT
TTTCAATTC
Found at i:77952988 original size:74 final size:74
Alignment explanation
Indices: 77952829--77952986 Score: 210
Period size: 74 Copynumber: 2.1 Consensus size: 74
77952819 TTAATGTCTG
* * * *
77952829 TTTTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCCAAGGTATTTT
1 TTTTCAAAAATCAACTCATATTGCGAGAGATGAATTGAGCCTTGGCTCACACACCAAGGTATTTT
*
77952894 CAATTCCTG
66 CAATTCCTC
* * * *
77952903 TTTTCGAAAATCAACTCATATTGCGAGAGATGAATTGAGCCTTGGGTCACATACCGAGGTATTTT
1 TTTTCAAAAATCAACTCATATTGCGAGAGATGAATTGAGCCTTGGCTCACACACCAAGGTATTTT
77952968 CAAATT-CTAC
66 C-AATTCCT-C
77952978 TTTTCAAAA
1 TTTTCAAAA
77952987 TCTGTTTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
74 60 0.83
75 12 0.17
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (74 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGATGAATTGAGCCTTGGCTCACACACCAAGGTATTTT
CAATTCCTC
Found at i:77954587 original size:15 final size:14
Alignment explanation
Indices: 77954564--77954637 Score: 57
Period size: 14 Copynumber: 5.3 Consensus size: 14
77954554 TTCATTTAGC
*
77954564 TTTAAATATTATTCA
1 TTTATATATTATT-A
77954579 TTTATATA-TATTA
1 TTTATATATTATTA
*
77954592 TTGT-TATCACTATTA
1 TT-TATAT-ATTATTA
*
77954607 TTTTTATATTATTA
1 TTTATATATTATTA
77954621 -TTATTATATTA-TA
1 TTTA-TATATTATTA
77954634 TTTA
1 TTTA
77954638 GGTATATTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 13
0.76 0.05 0.20
Matches are distributed among these distances:
13 10 0.20
14 23 0.46
15 17 0.34
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (14 bp):
TTTATATATTATTA
Found at i:77954696 original size:3 final size:3
Alignment explanation
Indices: 77954688--77954729 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
77954678 GCATATATAT
* *
77954688 TTA TTA TTA TTA GTA TTA TTA -TA TTCA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
77954730 GTACTAGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:77954858 original size:23 final size:23
Alignment explanation
Indices: 77954832--77954929 Score: 85
Period size: 23 Copynumber: 4.2 Consensus size: 23
77954822 ATTTCTAATA
*
77954832 TATATATATATCGTATATGTTTT
1 TATATATATATCGTATATATTTT
77954855 TATATATATTAT-GTATATATTTT
1 TATATATA-TATCGTATATATTTT
* *
77954878 TA-ATAT-TATTAGTTATATTTTTT
1 TATATATATA-TCG-TATATATTTT
* * *
77954901 TATATACTATTTCGTGTATATATT
1 TATATA-TATATCGTATATATTTT
77954925 TATAT
1 TATAT
77954930 TATCGTTATT
Statistics
Matches: 61, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
20 2 0.03
21 1 0.02
22 5 0.08
23 31 0.51
24 18 0.30
25 3 0.05
26 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.59
Consensus pattern (23 bp):
TATATATATATCGTATATATTTT
Found at i:77954895 original size:46 final size:46
Alignment explanation
Indices: 77954845--77954932 Score: 117
Period size: 46 Copynumber: 1.9 Consensus size: 46
77954835 ATATATATCG
*
77954845 TATATGTTTTTATATA-TATTAT-GTATATATTTTTAATATTATTAGT
1 TATATGTTTTTATATACTATT-TCGTATATATATTT-ATATTATTAGT
* *
77954891 TATATTTTTTTATATACTATTTCGTGTATATATTTATATTAT
1 TATATGTTTTTATATACTATTTCGTATATATATTTATATTAT
77954933 CGTTATTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
46 23 0.62
47 14 0.38
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (46 bp):
TATATGTTTTTATATACTATTTCGTATATATATTTATATTATTAGT
Found at i:77955099 original size:24 final size:24
Alignment explanation
Indices: 77955056--77955118 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
77955046 TTCTAATATG
*
77955056 TATATACTATGTA-A-ATATTTTAA
1 TATATATTATGTATACAT-TTTTAA
*
77955079 TACTATATTATGTATACATTTTTTA
1 TA-TATATTATGTATACATTTTTAA
*
77955104 TATATATTACGTATA
1 TATATATTATGTATA
77955119 TATATCTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 2 0.06
24 22 0.65
25 8 0.24
26 2 0.06
ACGTcount: A:0.38, C:0.06, G:0.05, T:0.51
Consensus pattern (24 bp):
TATATATTATGTATACATTTTTAA
Found at i:77955233 original size:32 final size:30
Alignment explanation
Indices: 77955172--77955236 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
77955162 TTTCTAATAC
* * *
77955172 TATATTACATTTTTTACATATTATCTTATG
1 TATATTACATTTTTTAAATACTATATTATG
*
77955202 TATATATATATTTTTTAAATAACTATATTATG
1 TATAT-TACATTTTTTAAAT-ACTATATTATG
77955234 TAT
1 TAT
77955237 GTATTTTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 5 0.17
31 12 0.41
32 12 0.41
ACGTcount: A:0.35, C:0.06, G:0.03, T:0.55
Consensus pattern (30 bp):
TATATTACATTTTTTAAATACTATATTATG
Found at i:77955255 original size:25 final size:25
Alignment explanation
Indices: 77955224--77955271 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
77955214 TTTTAAATAA
**
77955224 CTATATTATGTATGTATTTTTAACG
1 CTATATTATGTACATATTTTTAACG
77955249 CTATATTATGTACATATTTTTAA
1 CTATATTATGTACATATTTTTAA
77955272 TACTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.52
Consensus pattern (25 bp):
CTATATTATGTACATATTTTTAACG
Found at i:77955277 original size:25 final size:25
Alignment explanation
Indices: 77955213--77955277 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 25
77955203 ATATATATAT
**
77955213 TTTTTAAATAACTATATTATGTATGTA
1 TTTTT-AAT-ACTATATTATGTACATA
**
77955240 TTTTTAACGCTATATTATGTACATA
1 TTTTTAATACTATATTATGTACATA
77955265 TTTTTAATACTAT
1 TTTTTAATACTAT
77955278 GTATACACTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
25 25 0.78
26 2 0.06
27 5 0.16
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.52
Consensus pattern (25 bp):
TTTTTAATACTATATTATGTACATA
Found at i:77958267 original size:27 final size:27
Alignment explanation
Indices: 77958228--77958316 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
77958218 AGTTGCGCCT
* * * *
77958228 ATAGGCCCTACCAGTCGCACCTGCCAG
1 ATAGGCTCAACCAGTCGCGCCTGTCAG
* *
77958255 ATAGGCTCAACCATTCGCGCCTATCAG
1 ATAGGCTCAACCAGTCGCGCCTGTCAG
* * *
77958282 ATAGGCTCCACCAGTTGCGTCTGTCAG
1 ATAGGCTCAACCAGTCGCGCCTGTCAG
77958309 ATAGGCTC
1 ATAGGCTC
77958317 CGCCAAGTGC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.22, C:0.34, G:0.22, T:0.21
Consensus pattern (27 bp):
ATAGGCTCAACCAGTCGCGCCTGTCAG
Found at i:77958317 original size:27 final size:27
Alignment explanation
Indices: 77958252--77958347 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 27
77958242 TCGCACCTGC
*
77958252 CAGATAGGCTCAACCATTCGCGCCTAT
1 CAGATAGGCTCCACCATTCGCGCCTAT
* *
77958279 CAGATAGGCTCCACCAGTT-GCGTCTGT
1 CAGATAGGCTCCACCA-TTCGCGCCTAT
* *
77958306 CAGATAGGCTCCGCCAAGT-GCGCCTA-
1 CAGATAGGCTCCACC-ATTCGCGCCTAT
*
77958332 CTAGATAGGCGCCACC
1 C-AGATAGGCTCCACC
77958348 TACCCATACC
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
26 1 0.02
27 53 0.93
28 3 0.05
ACGTcount: A:0.23, C:0.33, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATAGGCTCCACCATTCGCGCCTAT
Found at i:77959477 original size:32 final size:32
Alignment explanation
Indices: 77959440--77959515 Score: 82
Period size: 32 Copynumber: 2.3 Consensus size: 32
77959430 TTTTTTTATA
77959440 ATTTTTTATTTTTAAAAATTATAT-ATTTTTT
1 ATTTTTTATTTTTAAAAATTATATAATTTTTT
** * * *
77959471 ACTTTTTTAAATTTATAATTTATTTAATTTTTT
1 A-TTTTTTATTTTTAAAAATTATATAATTTTTT
77959504 ATGTTTTTATTT
1 AT-TTTTTATTT
77959516 AAAATGTGCA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
31 1 0.03
32 19 0.54
33 15 0.43
ACGTcount: A:0.29, C:0.01, G:0.01, T:0.68
Consensus pattern (32 bp):
ATTTTTTATTTTTAAAAATTATATAATTTTTT
Found at i:77959503 original size:25 final size:24
Alignment explanation
Indices: 77959434--77959504 Score: 90
Period size: 25 Copynumber: 2.9 Consensus size: 24
77959424 AAGTGTTTTT
*
77959434 TTTATAATTTTTT-ATTTTTAAAA
1 TTTATAATTTTTTAATTTTTTAAA
* *
77959457 ATTATATATTTTTTACTTTTTTAAA
1 TTTATA-ATTTTTTAATTTTTTAAA
77959482 TTTATAATTTATTTAATTTTTTA
1 TTTATAATTT-TTTAATTTTTTA
77959505 TGTTTTTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
23 5 0.12
24 11 0.28
25 24 0.60
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.66
Consensus pattern (24 bp):
TTTATAATTTTTTAATTTTTTAAA
Found at i:77959740 original size:20 final size:18
Alignment explanation
Indices: 77959711--77959749 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
77959701 TAATGTTTTG
77959711 AAATTAAAATATAAAGAAAA
1 AAATTAAAAT-TAAA-AAAA
*
77959731 AAATTTAAATTAAAAAAA
1 AAATTAAAATTAAAAAAA
77959749 A
1 A
77959750 TAGAGAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 4 0.22
20 9 0.50
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (18 bp):
AAATTAAAATTAAAAAAA
Found at i:77960383 original size:28 final size:26
Alignment explanation
Indices: 77960351--77960411 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 26
77960341 TTTTAAATAA
77960351 TTTTAATGATTTTT-AATTTTACAAACAT
1 TTTTAAT-ATTTTTGAATTTT-CAAA-AT
*
77960379 TTTTACATTTTTTTGAATTTTCAAAAT
1 TTTTA-ATATTTTTGAATTTTCAAAAT
77960406 TTTTAA
1 TTTTAA
77960412 AAAATCAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
26 1 0.03
27 7 0.23
28 14 0.47
29 8 0.27
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (26 bp):
TTTTAATATTTTTGAATTTTCAAAAT
Found at i:77960758 original size:31 final size:31
Alignment explanation
Indices: 77960678--77960765 Score: 78
Period size: 29 Copynumber: 2.9 Consensus size: 31
77960668 AAATACAAAA
* *
77960678 AAAAAAATCAATTAAGCCCCTATATTAAATT
1 AAAACAATCAATTAAGCCCCTTTATTAAATT
*
77960709 --CAC-ATCCAATT-AGTCCCCTTTAATT-AATT
1 AAAACAAT-CAATTAAG-CCCCTTT-ATTAAATT
*
77960738 AAAACAATCAATTAAGCCCCTTTGTTAA
1 AAAACAATCAATTAAGCCCCTTTATTAA
77960766 TGGTTTCTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 16
0.68 0.08 0.25
Matches are distributed among these distances:
28 4 0.09
29 16 0.36
30 5 0.11
31 15 0.34
32 4 0.09
ACGTcount: A:0.42, C:0.22, G:0.05, T:0.32
Consensus pattern (31 bp):
AAAACAATCAATTAAGCCCCTTTATTAAATT
Found at i:77960987 original size:21 final size:21
Alignment explanation
Indices: 77960961--77961029 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
77960951 ATAAACTAAT
77960961 AAAATATTTTAAATATTATAA
1 AAAATATTTTAAATATTATAA
* *
77960982 AAAATA-TCTAATAAATTATAAA
1 AAAATATTTTAA-ATATTAT-AA
* * *
77961004 AAAATATTTAAAATATTTTTA
1 AAAATATTTTAAATATTATAA
77961025 AAAAT
1 AAAAT
77961030 TATTAAAAGT
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
20 4 0.11
21 18 0.47
22 13 0.34
23 3 0.08
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (21 bp):
AAAATATTTTAAATATTATAA
Found at i:77962207 original size:86 final size:86
Alignment explanation
Indices: 77962053--77962228 Score: 264
Period size: 86 Copynumber: 2.0 Consensus size: 86
77962043 TTAGGTTTAT
* * * * *
77962053 TTTTTTCCTTATTGTACTCTCGTTTGTTTATTCATTTAGTGAAAAGTCGATGTCTCCTTTATCCA
1 TTTTCTCCATATTGTACTATCGTTTGTTTACTCATTTAGTGAAAAGTCGATGTCTCATTTATCCA
77962118 TGGTTTTTCCCTCTTTGAGGG
66 TGGTTTTTCCCTCTTTGAGGG
* * *
77962139 TTTTCTCCATATTGTACTATTGTTTGTTTACTCATTTAGTGAAAATTTGAT-TCCTCATTTATCC
1 TTTTCTCCATATTGTACTATCGTTTGTTTACTCATTTAGTGAAAAGTCGATGT-CTCATTTATCC
77962203 ATGGTTTTTCCCTCTTTGAGGG
65 ATGGTTTTTCCCTCTTTGAGGG
77962225 TTTT
1 TTTT
77962229 TCACGTAAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
85 1 0.01
86 80 0.99
ACGTcount: A:0.16, C:0.18, G:0.15, T:0.51
Consensus pattern (86 bp):
TTTTCTCCATATTGTACTATCGTTTGTTTACTCATTTAGTGAAAAGTCGATGTCTCATTTATCCA
TGGTTTTTCCCTCTTTGAGGG
Found at i:77963652 original size:20 final size:20
Alignment explanation
Indices: 77963592--77963652 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
77963582 TTTAAAAAAA
77963592 TTATATTAATCTTATAAT-TTT
1 TTATA-TAAT-TTATAATATTT
* * *
77963613 TTGTATAATTTATTAGATTT
1 TTATATAATTTATAATATTT
*
77963633 TTATATATTTTATAATATTT
1 TTATATAATTTATAATATTT
77963653 ATAAGTTTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
19 5 0.16
20 23 0.72
21 4 0.12
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (20 bp):
TTATATAATTTATAATATTT
Found at i:77963675 original size:28 final size:28
Alignment explanation
Indices: 77963620--77963707 Score: 101
Period size: 28 Copynumber: 3.1 Consensus size: 28
77963610 TTTTTGTATA
*
77963620 ATTTATTAGATTTTTATATATTTTATAAT
1 ATTTATAAG-TTTTTATATATTTTATAAT
77963649 ATTTATAAGTTTTTATAT-TTTTCATAAT
1 ATTTATAAGTTTTTATATATTTT-ATAAT
* *
77963677 TTTTATAAGTTTATATCA-ATTTT-TAAT
1 ATTTATAAGTTTTTAT-ATATTTTATAAT
77963704 ATTT
1 ATTT
77963708 TTTAATAGTT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
27 11 0.21
28 28 0.54
29 13 0.25
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.61
Consensus pattern (28 bp):
ATTTATAAGTTTTTATATATTTTATAAT
Found at i:77963689 original size:26 final size:27
Alignment explanation
Indices: 77963631--77963707 Score: 88
Period size: 27 Copynumber: 2.8 Consensus size: 27
77963621 TTTATTAGAT
77963631 TTTTATATATTTTATAATATTTATAAG
1 TTTTATATATTTTATAATATTTATAAG
*
77963658 TTTT-TATATTTTTCATAATTTTTATAAG
1 TTTTATATA-TTTT-ATAATATTTATAAG
77963686 -TTTATATCAATTTT-TAATATTT
1 TTTTATAT--ATTTTATAATATTT
77963708 TTTAATAGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
26 4 0.09
27 18 0.42
28 16 0.37
29 4 0.09
30 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (27 bp):
TTTTATATATTTTATAATATTTATAAG
Found at i:77963736 original size:10 final size:10
Alignment explanation
Indices: 77963603--77963766 Score: 66
Period size: 9 Copynumber: 17.3 Consensus size: 10
77963593 TATATTAATC
77963603 TTATAATTTTT
1 TTATAA-TTTT
*
77963614 TGTATAATTTA
1 T-TATAATTTT
*
77963625 TTA-GA-TTT
1 TTATAATTTT
*
77963633 TTAT-ATATT
1 TTATAATTTT
*
77963642 TTATAA-TAT
1 TTATAATTTT
*
77963651 TTATAAGTTT
1 TTATAATTTT
77963661 TTAT-ATTTT
1 TTATAATTTT
*
77963670 TCATAA-TTT
1 TTATAATTTT
*
77963679 TTATAAGTTT
1 TTATAATTTT
*
77963689 ATATCAATTTT
1 TTAT-AATTTT
*
77963700 TAAT-A-TTT
1 TTATAATTTT
**
77963708 TT-TAATAGT
1 TTATAATTTT
*
77963717 TAATAA--TT
1 TTATAATTTT
77963725 TTATAATTTT
1 TTATAATTTT
* *
77963735 TT-TTACTTT
1 TTATAATTTT
*
77963744 TAAT-ATTTGT
1 TTATAATTT-T
77963754 TTATAATTTT
1 TTATAATTTT
77963764 TTA
1 TTA
77963767 ATTATTTTTA
Statistics
Matches: 112, Mismatches: 25, Indels: 33
0.66 0.15 0.19
Matches are distributed among these distances:
7 1 0.01
8 17 0.15
9 41 0.37
10 32 0.29
11 16 0.14
12 5 0.04
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.63
Consensus pattern (10 bp):
TTATAATTTT
Found at i:77963746 original size:27 final size:28
Alignment explanation
Indices: 77963694--77963765 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
77963684 AGTTTATATC
*
77963694 AATTTT-TAATATTTTTTAATAGTTAAT
1 AATTTTATAATTTTTTTTAATAGTTAAT
* *
77963721 AATTTTATAATTTTTTTTACT-TTTAAT
1 AATTTTATAATTTTTTTTAATAGTTAAT
*
77963748 ATTTGTTTATAATTTTTT
1 A-AT-TTTATAATTTTTT
77963766 AATTATTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 12 0.32
28 13 0.34
29 13 0.34
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (28 bp):
AATTTTATAATTTTTTTTAATAGTTAAT
Found at i:77963760 original size:37 final size:36
Alignment explanation
Indices: 77963616--77963774 Score: 121
Period size: 37 Copynumber: 4.3 Consensus size: 36
77963606 TAATTTTTTG
* *
77963616 TATAATTTATTAGATTTTT-ATATAT-TTTATAATATT
1 TATAATTTTTTATATTTTTAATAT-TGTTTATAAT-TT
* *
77963652 TATAAGTTTTTATATTTTTCATAATT-TTTATAAGTTT
1 TATAATTTTTTATATTTTTAAT-ATTGTTTATAA-TTT
* *
77963689 ATATCAATTTTTAATATTTTTTAATA--GTTAATAATTT
1 -TAT-AATTTTTTATA-TTTTTAATATTGTTTATAATTT
* *
77963726 TATAATTTTTTTTACTTTTAATATTTGTTTATAATTT
1 TATAATTTTTTATATTTTTAATA-TTGTTTATAATTT
*
77963763 TTTAATTATTTT
1 TATAATT-TTTT
77963775 TATGAGAAAA
Statistics
Matches: 100, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
34 8 0.08
35 9 0.09
36 19 0.19
37 31 0.31
38 16 0.16
39 10 0.10
40 7 0.07
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (36 bp):
TATAATTTTTTATATTTTTAATATTGTTTATAATTT
Found at i:77965306 original size:31 final size:31
Alignment explanation
Indices: 77965268--77965342 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
77965258 ATTTATTTAA
*
77965268 ATTTATACAATTGAATCA-AAATCAAATTTTC
1 ATTTATACAATTGAA-CAGAAATCAAAATTTC
* *
77965299 ATTTATACATTTGAACAGCAATCAAAATTTC
1 ATTTATACAATTGAACAGAAATCAAAATTTC
* *
77965330 ATGTATATAATTG
1 ATTTATACAATTG
77965343 CATTAAATCA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
30 2 0.05
31 35 0.95
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.39
Consensus pattern (31 bp):
ATTTATACAATTGAACAGAAATCAAAATTTC
Found at i:77966360 original size:20 final size:20
Alignment explanation
Indices: 77966321--77966360 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
77966311 TTACTTATTG
* *
77966321 ATTTTGTTGTTTTTTACAGC
1 ATTTTATTGTTGTTTACAGC
*
77966341 ATTTTATTGTTGTTTCCAGC
1 ATTTTATTGTTGTTTACAGC
77966361 CTTTACAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.57
Consensus pattern (20 bp):
ATTTTATTGTTGTTTACAGC
Found at i:77973511 original size:21 final size:21
Alignment explanation
Indices: 77973485--77973525 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
77973475 ATCTGCTCAA
* *
77973485 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
77973506 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
77973526 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:77978530 original size:24 final size:25
Alignment explanation
Indices: 77978484--77978533 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
77978474 AAATAAAAAA
*
77978484 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAATAT-ATAAAACAAATAT
77978510 ATTTAAAAATAT-TAAAACAAATAT
1 ATTTAAAAATATATAAAACAAATAT
77978534 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.48
26 12 0.52
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (25 bp):
ATTTAAAAATATATAAAACAAATAT
Found at i:77978531 original size:12 final size:12
Alignment explanation
Indices: 77978516--77978544 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
77978506 ATATATTTAA
77978516 AAATATTAAAAC
1 AAATATTAAAAC
77978528 AAATATTAAAAC
1 AAATATTAAAAC
77978540 AAATA
1 AAATA
77978545 AAAATAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (12 bp):
AAATATTAAAAC
Found at i:77980103 original size:22 final size:21
Alignment explanation
Indices: 77980054--77980108 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 21
77980044 AATACTTTAT
*
77980054 TTTCAAATTATTTATTTGGGA
1 TTTCAAAATATTTATTTGGGA
*
77980075 ATT-AAAATATTTGGATTT-GGA
1 TTTCAAAATATTT--ATTTGGGA
77980096 TTTCAAAAT-TTTA
1 TTTCAAAATATTTA
77980109 GCTTAAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
19 1 0.04
20 8 0.29
21 10 0.36
22 9 0.32
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (21 bp):
TTTCAAAATATTTATTTGGGA
Found at i:77990477 original size:3 final size:3
Alignment explanation
Indices: 77990469--77990494 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
77990459 TCACTTTGAA
77990469 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
77990495 AGATGCACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:77991277 original size:12 final size:12
Alignment explanation
Indices: 77991260--77991285 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77991250 TATTTGTTTC
77991260 TTGTTTTAATGT
1 TTGTTTTAATGT
77991272 TTGTTTTAATGT
1 TTGTTTTAATGT
77991284 TT
1 TT
77991286 TTAAATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.69
Consensus pattern (12 bp):
TTGTTTTAATGT
Found at i:77996408 original size:26 final size:26
Alignment explanation
Indices: 77996379--77996428 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
77996369 CCAGCACACC
*
77996379 AATATCGCAGCAAAGCTGCCAGTAAT
1 AATAACGCAGCAAAGCTGCCAGTAAT
**
77996405 AATAACGCAGCGTAGCTGCCAGTA
1 AATAACGCAGCAAAGCTGCCAGTA
77996429 GCAGTAAGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (26 bp):
AATAACGCAGCAAAGCTGCCAGTAAT
Found at i:78012785 original size:35 final size:34
Alignment explanation
Indices: 78012739--78012811 Score: 128
Period size: 35 Copynumber: 2.1 Consensus size: 34
78012729 ATAGGATTTG
*
78012739 GAATGCCTAAGAACCCTCAAAATTGGCCTTTTCT
1 GAATGCCTAAGAACCCTCAAAATTAGCCTTTTCT
78012773 AGAATGCCTAAGAACCCTCAAAATTAGCCTTTTCT
1 -GAATGCCTAAGAACCCTCAAAATTAGCCTTTTCT
78012808 GAAT
1 GAAT
78012812 TGGACTAAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
34 4 0.11
35 33 0.89
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.29
Consensus pattern (34 bp):
GAATGCCTAAGAACCCTCAAAATTAGCCTTTTCT
Found at i:78016761 original size:25 final size:24
Alignment explanation
Indices: 78016729--78016778 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
78016719 TTAAATAAAA
* *
78016729 ATTTTAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
78016755 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
78016779 TAAAACAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:78017561 original size:55 final size:55
Alignment explanation
Indices: 78017474--78017595 Score: 154
Period size: 55 Copynumber: 2.2 Consensus size: 55
78017464 TATGTAGTCC
* * * *
78017474 CACGCCCGTGTTAATATAATAGGTTCAACCACGGTTGCTTGGCACGGGCGTGTCG
1 CACGCCCGTGTTAATATAACAGGATCAACCACGATTGCTAGGCACGGGCGTGTCG
* * * * * *
78017529 CATGCCCGTGTTAATTTGACAGGATCAGCCACGATTTCTAGGCACGGGTGTGTCG
1 CACGCCCGTGTTAATATAACAGGATCAACCACGATTGCTAGGCACGGGCGTGTCG
78017584 CACGCCCGTGTT
1 CACGCCCGTGTT
78017596 GTTTTGAAAG
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (55 bp):
CACGCCCGTGTTAATATAACAGGATCAACCACGATTGCTAGGCACGGGCGTGTCG
Done.