Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 24 of 279
Found at i:7902736 original size:22 final size:22
Alignment explanation
Indices: 7902704--7902745 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7902694 TATAGTGTAA
7902704 AAAATACATACATAACATAATT
1 AAAATACATACATAACATAATT
* *
7902726 AAAATATATACATAAGATAA
1 AAAATACATACATAACATAA
7902746 CATGTAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.10, G:0.02, T:0.26
Consensus pattern (22 bp):
AAAATACATACATAACATAATT
Found at i:7902748 original size:27 final size:26
Alignment explanation
Indices: 7902707--7902798 Score: 76
Period size: 28 Copynumber: 3.3 Consensus size: 26
7902697 AGTGTAAAAA
*
7902707 ATACATACATAACATAATTAAAATAT
1 ATACATAAATAACATAATTAAAATAT
* **
7902733 ATACATAAGATAACATGTAGAAAAATAT
1 ATACATAA-ATAACAT-AATTAAAATAT
* * *
7902761 ATATATCAATAATATAGTATTAAAGATAT
1 ATACATAAATAACATA--ATTAAA-ATAT
7902790 ATACATAAA
1 ATACATAAA
7902799 ATAGTATAAT
Statistics
Matches: 49, Mismatches: 12, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
26 7 0.14
27 13 0.27
28 18 0.37
29 11 0.22
ACGTcount: A:0.57, C:0.08, G:0.05, T:0.30
Consensus pattern (26 bp):
ATACATAAATAACATAATTAAAATAT
Found at i:7902797 original size:25 final size:24
Alignment explanation
Indices: 7902759--7902890 Score: 96
Period size: 23 Copynumber: 5.6 Consensus size: 24
7902749 GTAGAAAAAT
7902759 ATATATATCAATAATATAGTATTAAAG
1 ATATATA-C-ATAATATAGTATT-AAG
* *
7902786 ATATATACATAAAATAGTA-TAAT
1 ATATATACATAATATAGTATTAAG
* *
7902809 ATATATACGTAATATAGAATTTAA-
1 ATATATACATAATATAGTA-TTAAG
* * *
7902833 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATATAGTATTAAG
* *
7902855 A-ATATATATAATATAATATTAAG
1 ATATATACATAATATAGTATTAAG
*
7902878 AAATATA-ATAATA
1 ATATATACATAATA
7902891 ACAAAAAAAG
Statistics
Matches: 87, Mismatches: 13, Indels: 14
0.76 0.11 0.12
Matches are distributed among these distances:
21 2 0.02
22 15 0.17
23 42 0.48
24 7 0.08
25 13 0.15
26 1 0.01
27 7 0.08
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.36
Consensus pattern (24 bp):
ATATATACATAATATAGTATTAAG
Found at i:7902888 original size:23 final size:25
Alignment explanation
Indices: 7902845--7902890 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
7902835 TATACCTAAT
7902845 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
7902870 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
7902891 ACAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:7903208 original size:16 final size:16
Alignment explanation
Indices: 7903170--7903208 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7903160 ATCTCCAAAA
*
7903170 AAAAACTAGCCTATCC
1 AAAAACTAGCCTATAC
*
7903186 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTATAC
*
7903202 AATAACT
1 AAAAACT
7903209 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.46, C:0.26, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTATAC
Found at i:7903394 original size:18 final size:18
Alignment explanation
Indices: 7903371--7903424 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
7903361 ACAAGTGGTG
7903371 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
7903389 GTGGAG-TAG-GT-G---
1 GTGGAGCAAGTGTGGCTA
7903401 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
7903419 GTGGAG
1 GTGGAG
7903425 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 6 0.21
13 2 0.07
14 2 0.07
15 2 0.07
16 2 0.07
17 2 0.07
18 12 0.43
ACGTcount: A:0.20, C:0.07, G:0.50, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:7903403 original size:30 final size:30
Alignment explanation
Indices: 7903367--7903434 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
7903357 AGGTACAAGT
7903367 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
7903397 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
7903427 GGTGGTGG
1 GGTGGTGG
7903435 CAAAGGCTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.16, C:0.06, G:0.53, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:7908928 original size:44 final size:43
Alignment explanation
Indices: 7908793--7909254 Score: 291
Period size: 44 Copynumber: 10.4 Consensus size: 43
7908783 TGTTCCTCTA
* * *
7908793 CAACTTCAGGGAGATAAGATCTGCTATCTTTAGTCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATC-G-TAGCTTCAATCTGCTCCACTG
* * * * ** *
7908838 TAACTTCAGGGAGATAAGACTTGTTA-CTTCAACCCGCTTTATTG
1 CAACTTCAGGGAGATAAGA-TCG-TAGCTTCAATCTGCTCCACTG
** * *
7908882 CAACTTCAAAGAGATAAGGATCGTGGCTTCAATTTGCTCCACTG
1 CAACTTCAGGGAGATAA-GATCGTAGCTTCAATCTGCTCCACTG
* * *
7908926 CAAATTCGGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATC-G-TAGCTTCAATCTGCTCCACTG
* * * * **
7908971 TAACTTCAGGGAGATAAGACTTGTTA-CTTCAACCCGCTCTGCTG
1 CAACTTCAGGGAGATAAGA-TCG-TAGCTTCAATCTGCTCCACTG
* * * *
7909015 CAACTTCAGAGAGATAAGGATCGTGGCTTCGATATGCTCCACTG
1 CAACTTCAGGGAGATAA-GATCGTAGCTTCAATCTGCTCCACTG
* * * *
7909059 AAACTTCAAGGAGATAAGATCTGCTATCTTCAATCTGCTCTACTG
1 CAACTTCAGGGAGATAAGATC-G-TAGCTTCAATCTGCTCCACTG
* * * * * * *
7909104 CAACTTTAGGGAGATAAGACTTGTTA-CTTTAACCCGTTCTACTG
1 CAACTTCAGGGAGATAAGA-TCG-TAGCTTCAATCTGCTCCACTG
* * * * * * *
7909148 CAACTTTAGAGAGATAAGGATCATGGTTTCGATCTGATCCACTG
1 CAACTTCAGGGAGATAA-GATCGTAGCTTCAATCTGCTCCACTG
* * * *
7909192 CAACTTCAGGGAGATAAGATCTGCCATCTTCAGTCTGCTTCACTG
1 CAACTTCAGGGAGATAAGATC-G-TAGCTTCAATCTGCTCCACTG
* *
7909237 CAACTTCAGAGAAATAAG
1 CAACTTCAGGGAGATAAG
7909255 GTTTGCTATG
Statistics
Matches: 314, Mismatches: 88, Indels: 30
0.73 0.20 0.07
Matches are distributed among these distances:
43 15 0.05
44 168 0.54
45 128 0.41
46 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
CAACTTCAGGGAGATAAGATCGTAGCTTCAATCTGCTCCACTG
Found at i:7908976 original size:89 final size:89
Alignment explanation
Indices: 7908826--7909255 Score: 329
Period size: 89 Copynumber: 4.9 Consensus size: 89
7908816 CTATCTTTAG
* * * * ** *
7908826 TCTGCTCCACTGTAACTTCAGGGAGATAAGA-CTTGTTA-CTTCAACCCGCTTTATTGCAACTTC
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATC-TGCTATCTTCAATCTGCTCCACTGCAACTTC
*
7908889 AAAGAGATAAGGATCGTGGCTTCAA
65 AGAGAGATAAGGATCGTGGCTTCAA
* * * *
7908914 TTTGCTCCACTGCAAATTCGGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGTAACTTCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCA
* * **
7908979 GGGAGATAA-GACTTGTTACTTCAA
66 GAGAGATAAGGA-TCGTGGCTTCAA
* * ** * ** * * *
7909003 CCCGCTCTGCTGCAACTTCAGAGAGATAAGGATC-G-TGGCTTCGATATGCTCCACTGAAACTTC
1 TCTGCTCCACTGCAACTTCAGGGAGATAA-GATCTGCTATCTTCAATCTGCTCCACTGCAACTTC
**
7909066 A-AGGAGATAA-GATCTGCTATCTTCAA
65 AGA-GAGATAAGGATC-G-TGGCTTCAA
* * * * * * * * *
7909092 TCTGCTCTACTGCAACTTTAGGGAGATAAGA-CTTGTTA-CTTTAACCCGTTCTACTGCAACTTT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATC-TGCTATCTTCAATCTGCTCCACTGCAACTTC
* * *
7909155 AGAGAGATAAGGATCATGGTTTCGA
65 AGAGAGATAAGGATCGTGGCTTCAA
* * * *
7909180 TCTGATCCACTGCAACTTCAGGGAGATAAGATCTGCCATCTTCAGTCTGCTTCACTGCAACTTCA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCA
*
7909245 GAGAAATAAGG
66 GAGAGATAAGG
7909256 TTTGCTATGA
Statistics
Matches: 261, Mismatches: 67, Indels: 27
0.74 0.19 0.08
Matches are distributed among these distances:
87 2 0.01
88 105 0.40
89 144 0.55
90 10 0.04
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (89 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCA
GAGAGATAAGGATCGTGGCTTCAA
Found at i:7909039 original size:133 final size:133
Alignment explanation
Indices: 7908797--7909254 Score: 657
Period size: 133 Copynumber: 3.4 Consensus size: 133
7908787 CCTCTACAAC
* * *
7908797 TTCAGGGAGATAAGATCTGCTATCTTTAGTCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGT
1 TTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
* * * * *
7908862 TACTTCAACCCGCTTTATTGCAACTTCAAAGAGATAAGGATCGTGGCTTCAATTTGCTCCACTGC
66 TACTTCAACCCGCTCTACTGCAACTTCAGAGAGATAAGGATCGTGGCTTCGATATGCTCCACTGC
7908927 AAA
131 AAA
* *
7908930 TTCGGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGTAACTTCAGGGAGATAAGACTTGT
1 TTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
*
7908995 TACTTCAACCCGCTCTGCTGCAACTTCAGAGAGATAAGGATCGTGGCTTCGATATGCTCCACTG-
66 TACTTCAACCCGCTCTACTGCAACTTCAGAGAGATAAGGATCGTGGCTTCGATATGCTCCACTGC
7909059 AAA
131 AAA
* * *
7909062 CTTCAAGGAGATAAGATCTGCTATCTTCAATCTGCTCTACTGCAACTTTAGGGAGATAAGACTTG
1 -TTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG
* * * * * * *
7909127 TTACTTTAACCCGTTCTACTGCAACTTTAGAGAGATAAGGATCATGGTTTCGATCTGATCCACTG
65 TTACTTCAACCCGCTCTACTGCAACTTCAGAGAGATAAGGATCGTGGCTTCGATATGCTCCACTG
*
7909192 CAAC
130 CAAA
* * * * *
7909196 TTCAGGGAGATAAGATCTGCCATCTTCAGTCTGCTTCACTGCAACTTCAGAGAAATAAG
1 TTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
7909255 GTTTGCTATG
Statistics
Matches: 292, Mismatches: 31, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
132 3 0.01
133 287 0.98
134 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (133 bp):
TTCAGGGAGATAAGATCTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGT
TACTTCAACCCGCTCTACTGCAACTTCAGAGAGATAAGGATCGTGGCTTCGATATGCTCCACTGC
AAA
Found at i:7926740 original size:48 final size:48
Alignment explanation
Indices: 7926662--7926853 Score: 217
Period size: 48 Copynumber: 4.0 Consensus size: 48
7926652 ATGTCATTAG
* * *
7926662 GAGTTACATTGATTTGGCTTTGGGCAATGATATTAGCACTTCGGGTGT
1 GAGTTACATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGC
* *
7926710 GAGTTACATTGATTTGGCTTCGGGCCATGATATTACCACTTCGGGTAC
1 GAGTTACATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGC
* * *
7926758 GAGTTACATTGATTTGGC-TCTGGGCCATTATATTAGCACTTTGAGTGC
1 GAGTTACATTGATTTGGCTTC-GGGCCATGATATTAGCACTTCGGGTGC
* * ** ** *
7926806 GAGACT-CATTAAAATGGCTTCGGGCCATGATATGGGCACTTAGGGTGC
1 GAG-TTACATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGC
7926854 AAGACTTTTG
Statistics
Matches: 122, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
47 2 0.02
48 117 0.96
49 3 0.02
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (48 bp):
GAGTTACATTGATTTGGCTTCGGGCCATGATATTAGCACTTCGGGTGC
Found at i:7926826 original size:96 final size:96
Alignment explanation
Indices: 7926662--7926838 Score: 248
Period size: 96 Copynumber: 1.8 Consensus size: 96
7926652 ATGTCATTAG
* * * * * **
7926662 GAGTTACATTGATTTGGCTTTGGGCAATGATATTAGCACTTCGGGTGTGAGTTACATTGATTTGG
1 GAGTTACATTGATTTGGCTCTGGGCAATGATATTAGCACTTCGAGTGCGAGCTACATTAAAATGG
7926727 CTTCGGGCCATGATATTACCACTTCGGGTAC
66 CTTCGGGCCATGATATTACCACTTCGGGTAC
* * *
7926758 GAGTTACATTGATTTGGCTCTGGGCCATTATATTAGCACTTTGAGTGCGAGACT-CATTAAAATG
1 GAGTTACATTGATTTGGCTCTGGGCAATGATATTAGCACTTCGAGTGCGAG-CTACATTAAAATG
7926822 GCTTCGGGCCATGATAT
65 GCTTCGGGCCATGATAT
7926839 GGGCACTTAG
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
96 69 0.99
97 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (96 bp):
GAGTTACATTGATTTGGCTCTGGGCAATGATATTAGCACTTCGAGTGCGAGCTACATTAAAATGG
CTTCGGGCCATGATATTACCACTTCGGGTAC
Found at i:7929305 original size:46 final size:48
Alignment explanation
Indices: 7929202--7929470 Score: 195
Period size: 45 Copynumber: 5.7 Consensus size: 48
7929192 AGAGCCTGAG
* * * * *
7929202 AGCCAGTGTAAGACCATATCTGGGACATGGCATCTGCATTGAGACG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
* *
7929249 GAGCTA-TGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
*
7929295 AGCCAGTGTAAGA-CATG-CTGGGACAT-GCATCGG-CTACAAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGTA
* * * ** *
7929339 -GTCTGTGTAAGACCATGTTTGGGACATGGCATCGGCACGTATAGAGGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-C-TCGAGATGTA
* ** * * *
7929387 -GTCAGTGTAAGACCATGTCTACGACATGGCATCGACAC-GGATATGTGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATGT-A
*
7929435 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
7929471 ACTTGATGGA
Statistics
Matches: 179, Mismatches: 29, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
43 10 0.06
44 6 0.03
45 47 0.26
46 35 0.20
47 7 0.04
48 43 0.24
49 1 0.01
50 30 0.17
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA
Found at i:7929452 original size:50 final size:48
Alignment explanation
Indices: 7929298--7929472 Score: 166
Period size: 48 Copynumber: 3.7 Consensus size: 48
7929288 AGATGTAAGC
* * *
7929298 CAGTGTAAGA-CATG-CTGGGACAT-GCATCGGCTAC--A-AGATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGAC-ACGGATAGAGGAGT
* * * * *
7929341 CTGTGTAAGACCATGTTTGGGACATGGCATCGGCACGTATAGAGGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATAGAGGAGT
** *
7929389 CAGTGTAAGACCATGTCTACGACATGGCATCGACACGGATATGTGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATA-GAG-GAGT
7929438 CTAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGAC
7929473 TTGATGGATG
Statistics
Matches: 110, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
43 9 0.08
44 4 0.04
45 10 0.09
46 8 0.07
47 1 0.01
48 42 0.38
49 3 0.03
50 33 0.30
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATAGAGGAGT
Found at i:7934262 original size:19 final size:19
Alignment explanation
Indices: 7934240--7934285 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
7934230 ATTCCTTTCT
*
7934240 TTTGCATT-CATTTCATGCA
1 TTTGCATTGCATTGCAT-CA
*
7934259 TTTGCATTGCATTGCATTA
1 TTTGCATTGCATTGCATCA
7934278 TTTGCATT
1 TTTGCATT
7934286 AGACTTTCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (19 bp):
TTTGCATTGCATTGCATCA
Found at i:7938909 original size:64 final size:64
Alignment explanation
Indices: 7938803--7938930 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
7938793 CATATAATAA
*
7938803 CACATCTAGTTAAGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAAGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
* * * *
7938867 CACATTTAGTTAGGAGCATTTGATTCATTTCAATCATCGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAAGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
7938931 AGATACATGA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAAGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:7939122 original size:87 final size:86
Alignment explanation
Indices: 7938968--7939489 Score: 491
Period size: 87 Copynumber: 6.0 Consensus size: 86
7938958 ATGTTCCTCA
* *
7938968 GAGGTTGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCC
1 GAGGATGATGAGCCTT-AACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCC
7939033 CTAAGCAGTAGGGAAACAGATC
65 CTAAGCAGTAGGGAAACAGATC
* * * * * * * *
7939055 GGGGTTGATGAGCTTTAAGCCTCTAAGCAGTAGGGTAACAAGCTGAATTTACAAATCTTATCTCC
1 GAGGATGATGAGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCC
* **
7939120 CTAAGTAGTAGTGG-AGTAGATC
65 CTAAGCAGTAG-GGAAACAGATC
* * * * *
7939142 GAAGACTG-TGAACCTTAACCTCCTAAGCAGTAGGGTAACAGGCCG-ATTTACAGATCTTATCTC
1 GAGGA-TGATGAGCCTTAACC-CCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCC
**
7939205 CCTAAGCAGTAGTGG-AGTAGATC
64 CCTAAGCAGTAG-GGAAACAGATC
* * * * * *
7939228 GAAGACGGTGAGCTTTAACCCTCTAAGCAGTAGGGTAGCAGGCTGAATTTCCAGAT-TTAACCCC
1 GAGGATGATGAGCCTTAACCC-CTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCC
* * *
7939292 CTAAGTAGTAAGGAAACAGATT
65 CTAAGCAGTAGGGAAACAGATC
* * * * ** *
7939314 GAAGATGAAG-GACCTTAACCCCTTAAACAGTAGGGTAACAGGATGAATTCCCAAATCTTAACCC
1 GAGGATGATGAG-CCTTAACCCC-TAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCC
7939378 CCTAAGCAGTAGGGAAACAGATC
64 CCTAAGCAGTAGGGAAACAGATC
* ** * * *
7939401 AAAGG-TGACAAGCCTTAACCCCCTAGGCAGTAGGGTAACAGGCTGAAGATTGACAGTTCTTAAC
1 -GAGGATGATGAGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAGATCTTAAC
*
7939465 CCCCTAAGTAGTAGGGAAACAGATC
62 CCCCTAAGCAGTAGGGAAACAGATC
7939490 AAAAGCAATG
Statistics
Matches: 361, Mismatches: 58, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
85 6 0.02
86 142 0.39
87 165 0.46
88 12 0.03
89 36 0.10
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (86 bp):
GAGGATGATGAGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCC
TAAGCAGTAGGGAAACAGATC
Found at i:7939334 original size:44 final size:43
Alignment explanation
Indices: 7939284--7939658 Score: 199
Period size: 43 Copynumber: 8.6 Consensus size: 43
7939274 ATTTCCAGAT
* *
7939284 TTAACCCCCTAAGTAGTAAGGAAACAGATTGAAGATGAAGGACC
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGAAGG-CC
* * * * * **
7939328 TTAACCCCTTAAACAGTAGGGTAACAGGA-TGAA-TTCCCAA-ATC
1 TTAACCCCCTAAGCAGTAGGGAAACA-GATTGAAGAT--GAAGGCC
** * *
7939371 TTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGTGACAAGCC
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGA-AGGCC
* * ** **
7939415 TTAACCCCCTAGGCAGTAGGGTAACAGGCTGAAGATTGACAGTTC
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGA-TGA-AGGCC
* * * **
7939460 TTAACCCCCTAAGTAGTAGGGAAACAGA-TCAA-AAGCAATGGTT
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATG-AA-GGCC
* * * *
7939503 TTAAACCCCTAAGCAGTAAGGAAACAGATCGAAGGT-AAGGGCC
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGAA-GGCC
* * ** * **
7939546 TTAAACCCCTAAGCAGTAGGGTAACAGGCT-AA-ATTTACAGATC
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGA-TGA-AGGCC
* * ** *
7939589 TTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCC
1 TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGA-AGGCC
* *
7939633 TTAAACCCCTAAGCAGTAGGGTAACA
1 TTAACCCCCTAAGCAGTAGGGAAACA
7939659 AGCTGAATTT
Statistics
Matches: 244, Mismatches: 70, Indels: 34
0.70 0.20 0.10
Matches are distributed among these distances:
42 8 0.03
43 113 0.46
44 89 0.36
45 34 0.14
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.19
Consensus pattern (43 bp):
TTAACCCCCTAAGCAGTAGGGAAACAGATTGAAGATGAAGGCC
Found at i:7939383 original size:173 final size:172
Alignment explanation
Indices: 7938980--7939489 Score: 557
Period size: 173 Copynumber: 2.9 Consensus size: 172
7938970 GGTTGATGGG
7938980 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGG
1 CCTT-AACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGG
** * * * * *
7939045 GAAACAGATCGGGGTTGATGAGCTTTAAGCCTCTAAGCAGTAGGGTAACAAGCTGAATTTACAAA
65 GAAACAGATCGAAG-AGGTGAGCTTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA
* * * ** *
7939110 TCTTATCTCCCTAAGTAGT-AGTGGAGTAGATCGAAGACTGTGAA
129 TCTTAACCCCCTAAGTAGTAAG-GAAACAGATCGAAGACTGAGAA
* * *
7939154 CCTTAACCTCCTAAGCAGTAGGGTAACAGGCCG-ATTTACAGATCTTATCTCCCTAAGCAGTAGT
1 CCTTAACC-CCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG-
** * *
7939218 GG-AGTAGATCGAAGACGGTGAGCTTTAACCCTCTAAGCAGTAGGGTAGCAGGCTGAATTTCCAG
64 GGAAACAGATCGAAGA-GGTGAGCTTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAATTTACAG
* *
7939282 AT-TTAACCCCCTAAGTAGTAAGGAAACAGATTGAAGA-TGAAGGA
128 ATCTTAACCCCCTAAGTAGTAAGGAAACAGATCGAAGACTG-AGAA
* * ** *
7939326 CCTTAACCCCTTAAACAGTAGGGTAACAGGATGAATTCCCAAATCTTAACCCCCTAAGCAGTAGG
1 CCTTAACCCC-TAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGG
* * * *
7939391 GAAACAGATC-AA-AGGTGACAAGCCTTAACCCCCTAGGCAGTAGGGTAACAGGCTGAAGATTGA
65 GAAACAGATCGAAGAGGTG---AGCTTTAACCCTCTAAGCAGTAGGGTAACAGGCTG-A-ATTTA
* *
7939454 CAGTTCTTAACCCCCTAAGTAGTAGGGAAACAGATC
125 CAGATCTTAACCCCCTAAGTAGTAAGGAAACAGATC
7939490 AAAAGCAATG
Statistics
Matches: 281, Mismatches: 41, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
170 4 0.01
171 5 0.02
172 59 0.21
173 148 0.53
174 30 0.11
175 7 0.02
176 28 0.10
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.22
Consensus pattern (172 bp):
CCTTAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGG
AAACAGATCGAAGAGGTGAGCTTTAACCCTCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATC
TTAACCCCCTAAGTAGTAAGGAAACAGATCGAAGACTGAGAA
Found at i:7939592 original size:218 final size:217
Alignment explanation
Indices: 7939283--7939704 Score: 587
Period size: 218 Copynumber: 1.9 Consensus size: 217
7939273 AATTTCCAGA
* * *
7939283 TTTAACCCCCTAAGTAGTAAGGAAACAGATTGAAGATGAAGGACCTTAACCCCTTAAACAGTAGG
1 TTTAAACCCCTAAGCAGTAAGGAAACAGATCGAAGATGAAGGACCTTAACCCCTTAAACAGTAGG
* * *
7939348 GTAACAGGATGAATTCCCAAATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGTGACAAG
66 GTAACAGGATAAATTCACAAATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGCGACAAG
* * * * *
7939413 CCTTAACCCCCTAGGCAGTAGGGTAACAGGCTGAAGATTGACAGTTCTTAACCCCCTAAGTAGTA
131 CCTTAAACCCCTAAGCAGTAGGGTAACAAGCTG-A-ATTGACAGATCTTAACACCCTAAGTAGTA
7939478 GGGAAACAGATCAAAAGCAATGGT
194 GGGAAACAGATCAAAAGCAATGGT
* * *
7939502 TTTAAACCCCTAAGCAGTAAGGAAACAGATCGAAGGT-AAGGGCCTTAAACCCC-TAAGCAGTAG
1 TTTAAACCCCTAAGCAGTAAGGAAACAGATCGAAGATGAAGGACCTT-AACCCCTTAAACAGTAG
* * * * * ***
7939565 GGTAACAGGCTAAATTTACAGATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGG
65 GGTAACAGGATAAATTCACAAATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGCGACAA
* *
7939630 GCCTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTTACAGATCTTATCACCCTAAGTAGTAG
130 GCCTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTGACAGATCTTAACACCCTAAGTAGTAG
7939695 GGAAACAGAT
195 GGAAACAGAT
7939705 TGAAGTTATG
Statistics
Matches: 178, Mismatches: 24, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
216 36 0.20
217 1 0.01
218 102 0.57
219 39 0.22
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (217 bp):
TTTAAACCCCTAAGCAGTAAGGAAACAGATCGAAGATGAAGGACCTTAACCCCTTAAACAGTAGG
GTAACAGGATAAATTCACAAATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGGCGACAAG
CCTTAAACCCCTAAGCAGTAGGGTAACAAGCTGAATTGACAGATCTTAACACCCTAAGTAGTAGG
GAAACAGATCAAAAGCAATGGT
Found at i:7939658 original size:87 final size:86
Alignment explanation
Indices: 7939509--7939709 Score: 312
Period size: 87 Copynumber: 2.3 Consensus size: 86
7939499 GGTTTTAAAC
* * *
7939509 CCCTAAGCAGTAAGGAAACAGATCGAAGGTAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGG
1 CCCTAAGCAGTAGGGAAACAGATCGAAGGGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAAG
*
7939574 CTAAATTTACAGATCTTAACT
66 CTAAATTTACAGATCTTAACA
*
7939595 CCCTAAGCAGTAGGGAAACAGATCGAAGGCGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAA
1 CCCTAAGCAGTAGGGAAACAGATCGAAGG-GAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAA
* *
7939660 GCTGAATTTACAGATCTTATCA
65 GCTAAATTTACAGATCTTAACA
* *
7939682 CCCTAAGTAGTAGGGAAACAGATTGAAG
1 CCCTAAGCAGTAGGGAAACAGATCGAAG
7939710 TTATGAATCC
Statistics
Matches: 105, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
86 28 0.27
87 77 0.73
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (86 bp):
CCCTAAGCAGTAGGGAAACAGATCGAAGGGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAAG
CTAAATTTACAGATCTTAACA
Found at i:7939950 original size:89 final size:88
Alignment explanation
Indices: 7939857--7940179 Score: 274
Period size: 89 Copynumber: 3.5 Consensus size: 88
7939847 TTAGCAGAGA
* * *
7939857 AGATTGAAGTCACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAAACTGAAAATAGCGAATCTT
1 AGATTGAAGTCACAAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAAATAGC-AATCTT
*
7939922 ATTTCCCTGAAGTTGCAGTGGAAT
65 ATTTCCTTGAAGTTGCAGTGGAAT
* * * * * * *
7939946 AGATTAAAGCTATAAATAAATAGATCTTATCTCTCTGTAGTTACAGTAGAGCAGA-TCAAAATA-
1 AGATTGAAG---T---CACA-AG-TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAAATAG
* * * **
7940009 -AACCTTATCTCCTTGAAGTTGCAGTAGAGC
58 CAATCTTATTTCCTTGAAGTTGCAGTGGAAT
* * * *
7940039 AGGTTGAAGTCACTAGTCTTATCTCTCTGAAATTGCAGTGGAGCAGACTGAAGATAGCAAATCTT
1 AGATTGAAGTCACAAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAAATAGC-AATCTT
*
7940104 ATTTCCTTGAAGTTACAGTGGAAT
65 ATTTCCTTGAAGTTGCAGTGGAAT
* * *
7940128 AGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGTAGTGGAGCAGA
1 AGATTGAAG-T-CA-CA-AG-TCTTATCTCTCTGAAGTTGCAGTGGAGCAGA
7940180 TCAAAACAAA
Statistics
Matches: 178, Mismatches: 39, Indels: 29
0.72 0.16 0.12
Matches are distributed among these distances:
85 27 0.15
86 8 0.04
87 1 0.01
89 40 0.22
90 2 0.01
91 1 0.01
92 1 0.01
93 33 0.19
94 29 0.16
95 2 0.01
96 9 0.05
97 25 0.14
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (88 bp):
AGATTGAAGTCACAAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAAATAGCAATCTTA
TTTCCTTGAAGTTGCAGTGGAAT
Found at i:7941906 original size:18 final size:18
Alignment explanation
Indices: 7941883--7941917 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7941873 TATTTTAATG
7941883 CCATTATTATTATTATTT
1 CCATTATTATTATTATTT
*
7941901 CCATTATTGTTATTATT
1 CCATTATTATTATTATT
7941918 ATATATATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.11, G:0.03, T:0.60
Consensus pattern (18 bp):
CCATTATTATTATTATTT
Found at i:7942247 original size:22 final size:23
Alignment explanation
Indices: 7942205--7942252 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 23
7942195 ATCAATATTA
7942205 TTATTACTATTACTAACATTT-T
1 TTATTACTATTACTAACATTTAT
* *
7942227 TTATTA-TTTTACGTAATATTTAT
1 TTATTACTATTAC-TAACATTTAT
7942250 TTA
1 TTA
7942253 CAACTAGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 5 0.23
22 13 0.59
23 4 0.18
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.58
Consensus pattern (23 bp):
TTATTACTATTACTAACATTTAT
Found at i:7944068 original size:34 final size:36
Alignment explanation
Indices: 7944018--7944084 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 36
7944008 ATTAAAAATA
* *
7944018 TATTTTTATAATTTTTAATAAATTTAA-TATTTTTT
1 TATTTTTATAATTTTTAAAAAAATTAATTATTTTTT
*
7944053 TATTTTT-TTATTTTTAAAAAAATTAATTATTT
1 TATTTTTATAATTTTTAAAAAAATTAATTATTT
7944085 GTTGATTTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (36 bp):
TATTTTTATAATTTTTAAAAAAATTAATTATTTTTT
Found at i:7948014 original size:26 final size:26
Alignment explanation
Indices: 7947985--7948034 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
7947975 AGAAAATAAA
7947985 ATAAAATAATTTA-AAAATAAAAATAT
1 ATAAAAT-ATTTAGAAAATAAAAATAT
* *
7948011 ATAAAATTTTTAGAAATTAAAAAT
1 ATAAAATATTTAGAAAATAAAAAT
7948035 TGCCATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (26 bp):
ATAAAATATTTAGAAAATAAAAATAT
Found at i:7950428 original size:9 final size:9
Alignment explanation
Indices: 7950414--7950454 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
7950404 TTATTATTAT
*
7950414 ATTAAATGA
1 ATTAAATAA
7950423 ATTAAATAA
1 ATTAAATAA
*
7950432 AGTAAATAA
1 ATTAAATAA
7950441 ATTAAATTAA
1 ATTAAA-TAA
7950451 ATTA
1 ATTA
7950455 TAACAATTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
9 21 0.75
10 7 0.25
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (9 bp):
ATTAAATAA
Found at i:7952177 original size:22 final size:21
Alignment explanation
Indices: 7952117--7952164 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
7952107 GAGAAAAGCT
*
7952117 ATTG-AATAGTA-GTTATGAA
1 ATTGAAATAGTATGATATGAA
7952136 ATTGAAATAGTATGATATGAGA
1 ATTGAAATAGTATGATATGA-A
7952158 ATTGAAA
1 ATTGAAA
7952165 GTGTTATGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 4 0.16
20 7 0.28
21 6 0.24
22 8 0.32
ACGTcount: A:0.46, C:0.00, G:0.21, T:0.33
Consensus pattern (21 bp):
ATTGAAATAGTATGATATGAA
Found at i:7952514 original size:6 final size:6
Alignment explanation
Indices: 7952480--7952512 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
7952470 ATGCTATTAG
*
7952480 ATACAT ATACAT ATACAT ATACAT ATATAT ATA
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATA
7952513 TAAAAGCTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (6 bp):
ATACAT
Found at i:7968847 original size:93 final size:93
Alignment explanation
Indices: 7968735--7968906 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
7968725 GCCCATAAGT
*
7968735 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
7968800 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
7968828 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
7968893 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
7968907 CAAACATCCT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:7968902 original size:46 final size:46
Alignment explanation
Indices: 7968727--7968902 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
7968717 TGTAACCCGC
*
7968727 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
7968773 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
7968819 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
7968866 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
7968903 TGCCCAAACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
46 70 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:7973181 original size:102 final size:102
Alignment explanation
Indices: 7973005--7973302 Score: 479
Period size: 102 Copynumber: 2.9 Consensus size: 102
7972995 CATCCCTAAT
*
7973005 TATATTAACGCGGGAGCAGAGGATGGTGGCCATGGAAACACGAGGGAGCCTGAAATAGAGGAAGA
1 TATATTAACGCAGGAGCAGAGGATGGTGGCCATGGAAACACGAGGGAGCCTGAAATAGAGGAAGA
7973070 TGAAGGAGCTCATCTCATCGGAATCGAGCTTTATAAC
66 TGAAGGAGCTCATCTCATCGGAATCGAGCTTTATAAC
* * *
7973107 TATATTAACGCAGGTGTAGAGAATGGTGGCCATGGAAACACGAGGGAGCCTGAAATAGAGGAAGA
1 TATATTAACGCAGGAGCAGAGGATGGTGGCCATGGAAACACGAGGGAGCCTGAAATAGAGGAAGA
7973172 TGAAGGAGCTCATCTCATCGGAATCGAGCTTTATAAC
66 TGAAGGAGCTCATCTCATCGGAATCGAGCTTTATAAC
* * * * * ** *
7973209 TATATTAACGCTGGAGCAGAGGATGGTGGCCATGGCAACACGACGGATCCTGAAGTAGACAAAGG
1 TATATTAACGCAGGAGCAGAGGATGGTGGCCATGGAAACACGAGGGAGCCTGAAATAGAGGAAGA
*
7973274 TGAAGGAGCTCATGTCATCGGAATCGAGC
66 TGAAGGAGCTCATCTCATCGGAATCGAGC
7973303 CTTTTCACCT
Statistics
Matches: 180, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 180 1.00
ACGTcount: A:0.33, C:0.17, G:0.31, T:0.19
Consensus pattern (102 bp):
TATATTAACGCAGGAGCAGAGGATGGTGGCCATGGAAACACGAGGGAGCCTGAAATAGAGGAAGA
TGAAGGAGCTCATCTCATCGGAATCGAGCTTTATAAC
Found at i:7979729 original size:21 final size:20
Alignment explanation
Indices: 7979692--7979739 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
7979682 TAGCCTAGGT
**
7979692 GTGTGGCTTCACACATGGTC
1 GTGTGGCTTCACACATGCCC
*
7979712 GTGTGGCTTCCCCACATGCCC
1 GTGTGGCTT-CACACATGCCC
7979733 GTGTGGC
1 GTGTGGC
7979740 CAGACTGTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.10, C:0.31, G:0.31, T:0.27
Consensus pattern (20 bp):
GTGTGGCTTCACACATGCCC
Found at i:7981927 original size:19 final size:19
Alignment explanation
Indices: 7981903--7981943 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
7981893 TTTCTGACTC
7981903 CCTTGTCAGAAATTATTGT
1 CCTTGTCAGAAATTATTGT
*
7981922 CCTTGTCAGAAATTGTTGT
1 CCTTGTCAGAAATTATTGT
7981941 CCT
1 CCT
7981944 AAAACCACGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (19 bp):
CCTTGTCAGAAATTATTGT
Found at i:7987542 original size:17 final size:17
Alignment explanation
Indices: 7987520--7987554 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
7987510 CAAGAAAAGA
7987520 AAGACAAATACATAAGC
1 AAGACAAATACATAAGC
7987537 AAGACAAATACATAAGC
1 AAGACAAATACATAAGC
7987554 A
1 A
7987555 TATAATGCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.60, C:0.17, G:0.11, T:0.11
Consensus pattern (17 bp):
AAGACAAATACATAAGC
Found at i:7988568 original size:40 final size:40
Alignment explanation
Indices: 7988513--7988591 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
7988503 CAAAACCAAA
*
7988513 CTAGCCAATTTTTCTATGTTTTCAATTAAGCCTAAATTTC
1 CTAGCCAATTTTTCTATGTTTTCAATCAAGCCTAAATTTC
*
7988553 CTAGCCAATTTTTCTATGTTTTCAATCAAGGCTAAATTT
1 CTAGCCAATTTTTCTATGTTTTCAATCAAGCCTAAATTT
7988592 TCTATCATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.44
Consensus pattern (40 bp):
CTAGCCAATTTTTCTATGTTTTCAATCAAGCCTAAATTTC
Found at i:7990562 original size:28 final size:28
Alignment explanation
Indices: 7990530--7990583 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
7990520 CCCCAATGAC
**
7990530 TACCCCACAATGATCGAATTCCAACGGT
1 TACCCCACAACAATCGAATTCCAACGGT
*
7990558 TACCCCACAACAATTGAATTCCAACG
1 TACCCCACAACAATCGAATTCCAACG
7990584 ACTACTCACC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.35, C:0.33, G:0.11, T:0.20
Consensus pattern (28 bp):
TACCCCACAACAATCGAATTCCAACGGT
Found at i:7996042 original size:40 final size:40
Alignment explanation
Indices: 7995962--7996049 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 40
7995952 AAATTGTATG
* * * *
7995962 TAATATAATAAAATATTTATTATATTTATTTGTGTTTTTT
1 TAATATAATAAAACATTTATTATATTTATTGGTATGTTTT
7996002 TAATATAATAAAACATTTATTATATTTA-TGGTAATGTTTT
1 TAATATAATAAAACATTTATTATATTTATTGGT-ATGTTTT
7996042 TAATATAA
1 TAATATAA
7996050 ATATTTTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.07
40 40 0.93
ACGTcount: A:0.40, C:0.01, G:0.06, T:0.53
Consensus pattern (40 bp):
TAATATAATAAAACATTTATTATATTTATTGGTATGTTTT
Found at i:7998158 original size:16 final size:16
Alignment explanation
Indices: 7998133--7998163 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7998123 AACAAATTTA
7998133 AAAAAAATTAAAAAAT
1 AAAAAAATTAAAAAAT
*
7998149 AAAAATATTAAAAAA
1 AAAAAAATTAAAAAA
7998164 ATATAAACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAAAAATTAAAAAAT
Found at i:7998179 original size:17 final size:18
Alignment explanation
Indices: 7998147--7998242 Score: 90
Period size: 19 Copynumber: 5.2 Consensus size: 18
7998137 AAATTAAAAA
* *
7998147 ATAAAAATATTAAAAAAAT
1 ATAAAATTA-TAAAAAATT
*
7998166 ATAAACTTATAAAAAAGTT
1 ATAAAATTATAAAAAA-TT
*
7998185 A-AAAACTTAT-AAATATT
1 ATAAAA-TTATAAAAAATT
7998202 ATAAAATTATAAAAAATCT
1 ATAAAATTATAAAAAAT-T
7998221 A-ATAAATTATAAAAAATT
1 ATA-AAATTATAAAAAATT
7998239 ATAA
1 ATAA
7998243 GTTTATTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
17 7 0.11
18 27 0.42
19 30 0.47
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (18 bp):
ATAAAATTATAAAAAATT
Found at i:7998197 original size:10 final size:9
Alignment explanation
Indices: 7998135--7998242 Score: 68
Period size: 9 Copynumber: 12.2 Consensus size: 9
7998125 CAAATTTAAA
7998135 AAAAATTA-
1 AAAAATTAT
7998143 AAAAA-TA-
1 AAAAATTAT
7998150 AAAATATTA-
1 AAAA-ATTAT
*
7998159 AAAAAATAT
1 AAAAATTAT
*
7998168 -AAACTTAT
1 AAAAATTAT
7998176 AAAAAAGTTA-
1 -AAAAA-TTAT
*
7998186 AAAACTTAT
1 AAAAATTAT
*
7998195 AAATATTAT
1 AAAAATTAT
7998204 -AAAATTAT
1 AAAAATTAT
* *
7998212 AAAAAATCT
1 AAAAATTAT
7998221 AATAAATTAT
1 AA-AAATTAT
7998231 AAAAAATTAT
1 -AAAAATTAT
7998241 AA
1 AA
7998243 GTTTATTAAA
Statistics
Matches: 78, Mismatches: 12, Indels: 19
0.72 0.11 0.17
Matches are distributed among these distances:
7 6 0.08
8 25 0.32
9 27 0.35
10 15 0.19
11 5 0.06
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:7998205 original size:36 final size:37
Alignment explanation
Indices: 7998157--7998242 Score: 106
Period size: 36 Copynumber: 2.4 Consensus size: 37
7998147 ATAAAAATAT
* *
7998157 TAAAAAAATATAAACTTATAAAAAAGT-TAA-AAACTTA
1 TAAAAAATTATAAAATTATAAAAAA-TCTAATAAA-TTA
*
7998194 T-AAATATTATAAAATTATAAAAAATCTAATAAATTA
1 TAAAAAATTATAAAATTATAAAAAATCTAATAAATTA
7998230 TAAAAAATTATAA
1 TAAAAAATTATAA
7998243 GTTTATTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
35 1 0.02
36 27 0.64
37 14 0.33
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.31
Consensus pattern (37 bp):
TAAAAAATTATAAAATTATAAAAAATCTAATAAATTA
Found at i:8001295 original size:29 final size:29
Alignment explanation
Indices: 8001246--8001316 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
8001236 ATGAGATCTA
* * * *
8001246 TGGAGCTCTGGCGGTATATCCGTAATTAC
1 TGGAGTTCTGGCAGTAAATCCGCAATTAC
8001275 TGGAGTTCTGGCAGTAAATCCGCAATTAC
1 TGGAGTTCTGGCAGTAAATCCGCAATTAC
*
8001304 TGGAATTCTGGCA
1 TGGAGTTCTGGCA
8001317 ATTTGTTCGC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (29 bp):
TGGAGTTCTGGCAGTAAATCCGCAATTAC
Found at i:8001341 original size:24 final size:24
Alignment explanation
Indices: 8001308--8001359 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
8001298 AATTACTGGA
* * *
8001308 ATTCTGGCAATTTGTTCGCATTTT
1 ATTCTAGCAAATTGTTCGCATATT
*
8001332 ATTCTAGCAAATTGTTTGCATATT
1 ATTCTAGCAAATTGTTCGCATATT
8001356 ATTC
1 ATTC
8001360 CGGTGGTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.23, C:0.15, G:0.13, T:0.48
Consensus pattern (24 bp):
ATTCTAGCAAATTGTTCGCATATT
Found at i:8002456 original size:20 final size:20
Alignment explanation
Indices: 8002431--8002469 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8002421 TTTTTTTTTT
*
8002431 AAGTTTTTCAAACAAAAATG
1 AAGTTTTTCAAAAAAAAATG
8002451 AAGTTTTTCAAAAAAAAAT
1 AAGTTTTTCAAAAAAAAAT
8002470 TGGTTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (20 bp):
AAGTTTTTCAAAAAAAAATG
Found at i:8010807 original size:21 final size:21
Alignment explanation
Indices: 8010783--8010833 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
8010773 AATTGCACAC
8010783 GGCCGTGTGGGTCAATGGCCA
1 GGCCGTGTGGGTCAATGGCCA
8010804 GGCCGTGTGGGTCAATGGCCA
1 GGCCGTGTGGGTCAATGGCCA
*
8010825 GGCCATGTG
1 GGCCGTGTG
8010834 AATCGTGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.14, C:0.24, G:0.43, T:0.20
Consensus pattern (21 bp):
GGCCGTGTGGGTCAATGGCCA
Found at i:8012314 original size:27 final size:27
Alignment explanation
Indices: 8012284--8012336 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
8012274 TTTCATTCTT
*
8012284 TCCATACAAATAATTATTTTAGATTCC
1 TCCATACAAATAATTATTTCAGATTCC
* * *
8012311 TCCATGCGAGTAATTATTTCAGATTC
1 TCCATACAAATAATTATTTCAGATTC
8012337 TTTCGAATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (27 bp):
TCCATACAAATAATTATTTCAGATTCC
Found at i:8014681 original size:21 final size:21
Alignment explanation
Indices: 8014657--8014799 Score: 76
Period size: 21 Copynumber: 7.2 Consensus size: 21
8014647 AAGTCTAGCT
8014657 GAAGCACAT-AAGTGCTAAACG
1 GAAGCAC-TCAAGTGCTAAACG
* *
8014678 GAAGC-CTGAAG-GCT-AACT
1 GAAGCACTCAAGTGCTAAACG
8014696 GAAGCACTCAAGTGCTAAACG
1 GAAGCACTCAAGTGCTAAACG
*
8014717 GAAGC-C-CGAAG-GCT-AACT
1 GAAGCACTC-AAGTGCTAAACG
* * **
8014735 GAAGCACACAAATGCTAAATA
1 GAAGCACTCAAGTGCTAAACG
* **
8014756 GAAGC-C-CGAA-AGCT-AATT
1 GAAGCACTC-AAGTGCTAAACG
*
8014774 GAAGCACACAAGTGCTAAACG
1 GAAGCACTCAAGTGCTAAACG
8014795 GAAGC
1 GAAGC
8014800 CCGAAGGCTA
Statistics
Matches: 96, Mismatches: 12, Indels: 28
0.71 0.09 0.21
Matches are distributed among these distances:
18 24 0.25
19 23 0.24
20 22 0.23
21 27 0.28
ACGTcount: A:0.41, C:0.22, G:0.24, T:0.13
Consensus pattern (21 bp):
GAAGCACTCAAGTGCTAAACG
Found at i:8014698 original size:39 final size:39
Alignment explanation
Indices: 8014639--8014817 Score: 259
Period size: 39 Copynumber: 4.6 Consensus size: 39
8014629 ATCGTGATCT
* * *
8014639 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
8014678 GAAGCCTGAAGGCTAACTGAAGCACTCAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* **
8014717 GAAGCCCGAAGGCTAACTGAAGCACACAAATGCTAAATA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
8014756 GAAGCCCGAAAGCTAATTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
8014795 GAAGCCCGAAGGCTAATTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
8014818 TCATCAGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 124 1.00
ACGTcount: A:0.39, C:0.23, G:0.25, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:8018609 original size:13 final size:14
Alignment explanation
Indices: 8018591--8018635 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
8018581 CCCTATATAT
8018591 AGAAAAAAA-GAAA
1 AGAAAAAAATGAAA
8018604 AGAAAAAAATGAAA
1 AGAAAAAAATGAAA
* * *
8018618 ATAAAAAGATAAAA
1 AGAAAAAAATGAAA
8018632 AGAA
1 AGAA
8018636 GGTGAAAACC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
13 9 0.33
14 18 0.67
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (14 bp):
AGAAAAAAATGAAA
Found at i:8020009 original size:44 final size:45
Alignment explanation
Indices: 8019961--8020052 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 45
8019951 AGACACTAGC
* *
8019961 CTTAT-TTCCATAAGGTAGCAAGGGAGCATGCTAAAGATTGTAG-T
1 CTTATCTTCC-TAAGGAAGCAAGGGAGCAGGCTAAAGATTGTAGAT
* **
8020005 CTTATCTTCCTGAGGAAGCAAGGGAGCAGGCTGGAGATTGTAGAT
1 CTTATCTTCCTAAGGAAGCAAGGGAGCAGGCTAAAGATTGTAGAT
8020050 CTT
1 CTT
8020053 GTCTCCCCGA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
44 33 0.80
45 8 0.20
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (45 bp):
CTTATCTTCCTAAGGAAGCAAGGGAGCAGGCTAAAGATTGTAGAT
Found at i:8020188 original size:44 final size:44
Alignment explanation
Indices: 8020140--8020224 Score: 136
Period size: 44 Copynumber: 1.9 Consensus size: 44
8020130 CCGCTAACCT
*
8020140 TATC-TCTCTGAGGTAGCAAAGGAGCAGGCTGAAGATTGTAGTCG
1 TATCTTCT-TGAGGTAGCAAAGGAGCAGACTGAAGATTGTAGTCG
*
8020184 TATCTTCTTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAG
1 TATCTTCTTGAGGTAGCAAAGGAGCAGACTGAAGATTGTAG
8020225 ATTTTGTCTC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 35 0.92
45 3 0.08
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (44 bp):
TATCTTCTTGAGGTAGCAAAGGAGCAGACTGAAGATTGTAGTCG
Found at i:8020359 original size:178 final size:176
Alignment explanation
Indices: 8019897--8020500 Score: 656
Period size: 177 Copynumber: 3.4 Consensus size: 176
8019887 TAACATTAGA
* * *
8019897 GCAGATTGAAAGTGGAGAATCTTATCTTCCCGAGGTAGCAGGGGAGTAGATTTTAGACACTAGCC
1 GCAGATTGAAAATGG-GAATCTTATCTT-CCGAGGTAGCAGGGGAGCAGATTTTAGCCACTAGCC
* * * *
8019962 TTATTTC-CATAAGGTAGCAAGGGAGCATGCTAAAGATTGTAGTCTTATCTTCCTGAGGAAGCAA
64 TTATCTCTC-TAAGGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAA
* * * * * *
8020026 GGGAGCAGGCTGGAGATTGTAGATCTTGTCTCCCCGAGATAGTAGTGGG
128 GGGAGCAGACTGAAGATTGTAGATCTTGTCTCCCCGAGACAGCAATGAG
* ** * * * * * *
8020075 GCAAATCAAAAATGGAAAATCTTATTTTTCGAGGTAGTAGGGGAGCAGATTTTAGCCGCTAACCT
1 GCAGATTGAAAATGG-GAATCTTATCTTCCGAGGTAGCAGGGGAGCAGATTTTAGCCACTAGCCT
* * * *
8020140 TATCTCTCTGAGGTAGCAAAGGAGCAGGCTGAAGATTGTAGTCGTATCTTCTTGAGGTAGCAAGG
65 TATCTCTCTAAGGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGG
* *
8020205 GAGCAGACTGAAGATTGTAGATTTTGTCTCCTCGAGACAGCAATGAG
130 GAGCAGACTGAAGATTGTAGATCTTGTCTCCCCGAGACAGCAATGAG
* * *
8020252 GCAGATTGAAAATGGGAATTCTTATCTTCCTAAGGTAGCAGGAGAGCAGATTTTAGCCACCAGCC
1 GCAGATTGAAAATGGGAA-TCTTATCTTCC-GAGGTAGCAGGGGAGCAGATTTTAGCCACTAGCC
* *
8020317 TTATCTCTCTAAGGTAGCAAGGGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGTAACAAG
64 TTATCTCTCTAAGGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAG
* * * * ** * *
8020382 GGAACAGACTAAATATTGTAGATCTTATCTCCCTAAG-CAGTAGTCGA-
129 GGAGCAGACTGAAGATTGTAGATCTTGTCTCCCCGAGACAGCAAT-GAG
* * * * * * * **
8020429 GCAGATCGAAGACGGCGAGTCTTATCTTCCCAAGGTAGTAGGGGAACAGATTGAAGCCACTAGCC
1 GCAGATTGAAAATGG-GAATCTTATCTT-CCGAGGTAGCAGGGGAGCAGATTTTAGCCACTAGCC
8020494 TTATCTC
64 TTATCTC
8020501 CCTGAAGTTG
Statistics
Matches: 354, Mismatches: 66, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
176 2 0.01
177 207 0.58
178 145 0.41
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (176 bp):
GCAGATTGAAAATGGGAATCTTATCTTCCGAGGTAGCAGGGGAGCAGATTTTAGCCACTAGCCTT
ATCTCTCTAAGGTAGCAAGGGAGCAGGCTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGG
AGCAGACTGAAGATTGTAGATCTTGTCTCCCCGAGACAGCAATGAG
Found at i:8020364 original size:44 final size:44
Alignment explanation
Indices: 8020316--8020412 Score: 106
Period size: 44 Copynumber: 2.2 Consensus size: 44
8020306 AGCCACCAGC
* **
8020316 CTTATCTCTCTAAGGTAGCAAGGGAGCAGGTTGAAGATTGTAGT
1 CTTATCTCTCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
* * * *
8020360 CTTATCT-TCCTGAGGTAACAAGGGAACAGACTAAATATTGTAGAT
1 CTTATCTCT-CTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAG-T
8020405 CTTATCTC
1 CTTATCTC
8020413 CCTAAGCAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
43 1 0.02
44 34 0.79
45 8 0.19
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (44 bp):
CTTATCTCTCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
Found at i:8022493 original size:16 final size:16
Alignment explanation
Indices: 8022474--8022522 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
8022464 TTTATGTACA
8022474 TATTTTCTTTTAAATC
1 TATTTTCTTTTAAATC
* *
8022490 TATTTAT-GTTT--ATA
1 TATTT-TCTTTTAAATC
8022504 TATTTTCTTTTAAATC
1 TATTTTCTTTTAAATC
8022520 TAT
1 TAT
8022523 ATATATAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 8
0.68 0.11 0.22
Matches are distributed among these distances:
13 1 0.04
14 10 0.40
16 13 0.52
17 1 0.04
ACGTcount: A:0.27, C:0.08, G:0.02, T:0.63
Consensus pattern (16 bp):
TATTTTCTTTTAAATC
Found at i:8022496 original size:28 final size:29
Alignment explanation
Indices: 8022464--8022522 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
8022454 TTCGTATTAT
8022464 TTTATG-TACATATTTTCTTTTAAATCTA
1 TTTATGTTACATATTTTCTTTTAAATCTA
*
8022492 TTTATGTTTATATATTTTCTTTTAAATCTA
1 TTTATG-TTACATATTTTCTTTTAAATCTA
8022522 T
1 T
8022523 ATATATAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 6 0.21
30 22 0.79
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.61
Consensus pattern (29 bp):
TTTATGTTACATATTTTCTTTTAAATCTA
Found at i:8024875 original size:25 final size:25
Alignment explanation
Indices: 8024847--8024896 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
8024837 ATCCATTTTC
8024847 ATTTTTTAAT-ATTTAATTATTTTAT
1 ATTTTTTAATAATTT-ATTATTTTAT
* *
8024872 ATTTTTTGATAATTTTTTATTTTAT
1 ATTTTTTAATAATTTATTATTTTAT
8024897 TTTATAGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (25 bp):
ATTTTTTAATAATTTATTATTTTAT
Found at i:8024891 original size:20 final size:20
Alignment explanation
Indices: 8024860--8024918 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
8024850 TTTTAATATT
8024860 TAATTATTTTATATTTTTTGA
1 TAATT-TTTTATATTTTTTGA
*
8024881 TAATTTTTTAT-TTTATTTTA
1 TAATTTTTTATATTT-TTTGA
* *
8024901 TAGTTTTTTAAATTTTTT
1 TAATTTTTTATATTTTTT
8024919 ATGGGAAACA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
19 3 0.09
20 22 0.67
21 8 0.24
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.71
Consensus pattern (20 bp):
TAATTTTTTATATTTTTTGA
Found at i:8024897 original size:30 final size:29
Alignment explanation
Indices: 8024863--8024920 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
8024853 TAATATTTAA
8024863 TTATTTTATA-TTTTTTGATAATTTTTTATT
1 TTATTTTATAGTTTTTT-A-AATTTTTTATT
8024893 TTATTTTATAGTTTTTTAAATTTTTTAT
1 TTATTTTATAGTTTTTTAAATTTTTTAT
8024921 GGGAAACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 10 0.37
30 11 0.41
31 6 0.22
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.72
Consensus pattern (29 bp):
TTATTTTATAGTTTTTTAAATTTTTTATT
Found at i:8024909 original size:10 final size:10
Alignment explanation
Indices: 8024860--8024920 Score: 56
Period size: 10 Copynumber: 6.1 Consensus size: 10
8024850 TTTTAATATT
8024860 TAATTATTTTA
1 TAATT-TTTTA
8024871 T-ATTTTTTGA
1 TAATTTTTT-A
8024881 TAATTTTTTA
1 TAATTTTTTA
*
8024891 T-TTTATTTTA
1 TAATT-TTTTA
*
8024901 TAGTTTTTTA
1 TAATTTTTTA
8024911 -AATTTTTTA
1 TAATTTTTTA
8024920 T
1 T
8024921 GGGAAACATA
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
9 14 0.33
10 18 0.43
11 10 0.24
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.70
Consensus pattern (10 bp):
TAATTTTTTA
Found at i:8026243 original size:125 final size:126
Alignment explanation
Indices: 8026092--8026444 Score: 322
Period size: 130 Copynumber: 2.7 Consensus size: 126
8026082 TCCAACGAGA
* *
8026092 AAATCGAAACCCAGCA-TAGTAGGGCACGATTCCTCGAATTTCTAAACATCGAGCATTGCCTTAT
1 AAATCGCAACCCAGCACGA-TAGGGCACGATTCC-CGAATTTC-AAACATCGAGCATTGCCTTAT
* * * * *
8026156 TTT-AGA-ATTTAGAGAGT-ATGAATGAAATTCTAAAGAAATC-TTCGATTA-TTGAACGAACGG
63 TTTAAGATATTTAGA-AGTCATGAACGAAATTCCAAAGAAA-CATTCGATTACTTGAACAAAAGA
8026216 G
126 G
* * * *
8026217 AAATCGCAACCCAGCACGATAGGGCACGATTCCCGAATTGCCAAAGATCGAGTATTACCTTCATT
1 AAATCGCAACCCAGCACGATAGGGCACGATTCCCGAATT-TCAAACATCGAGCATTGCCTT-ATT
* * ** *
8026282 TTAAAGATTTTTTGAAGTCATGAACGAAATTCCAAAGGGACATTCGATTACTTTGAGCAAAAGAG
64 TT-AAGATATTTAGAAGTCATGAACGAAATTCCAAAGAAACATTCGATTAC-TTGAACAAAAGAG
* * * * * *
8026347 AAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGTCAAATATCGAACATCGCCTTCTT
1 AAATCGCAACCCAGCACGATAGGGCACGATTCC-CGAATT-TCAAACATCGAGCATTGCCTT-AT
* *
8026412 TTTAAAGGATTTTTAGAAGACATGAACGAAATT
63 TTT-AA-GATATTTAGAAGTCATGAACGAAATT
8026445 TTGAAGGGAT
Statistics
Matches: 189, Mismatches: 27, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
124 22 0.12
125 35 0.19
126 1 0.01
127 7 0.04
128 30 0.16
130 40 0.21
131 30 0.16
132 24 0.13
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (126 bp):
AAATCGCAACCCAGCACGATAGGGCACGATTCCCGAATTTCAAACATCGAGCATTGCCTTATTTT
AAGATATTTAGAAGTCATGAACGAAATTCCAAAGAAACATTCGATTACTTGAACAAAAGAG
Found at i:8026470 original size:132 final size:132
Alignment explanation
Indices: 8026216--8026558 Score: 422
Period size: 132 Copynumber: 2.6 Consensus size: 132
8026206 GAACGAACGG
* * * ** **
8026216 GAAATCGCAACCCAGCACGATAGGGCACGATTCC-CGAATTGCCAAAGATCGAGTATTACCTTCA
1 GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCA
* * *
8026280 TTTTAAA-GATTTTTTGAAGTCATGAACGAAATTCCAAAGGGACATTCGATTACTTTGAGCAAAA
66 TTTTAAAGGATTTTTAGAAGACATGAACGAAATTCCAAAGGGACATTCGATCACTTTGAGCAAAA
8026344 GA
131 GA
* *
8026346 GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGTCAAATATCGAACATCGCCTTCT
1 GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCA
*** * * * **
8026411 TTTTAAAGGATTTTTAGAAGACATGAACGAAATTTTGAAGGGATATTTGATCATTTTGAGCAAGC
66 TTTTAAAGGATTTTTAGAAGACATGAACGAAATTCCAAAGGGACATTCGATCACTTTGAGCAAAA
8026476 GA
131 GA
* * * *
8026478 GAAATTGCAACCCAACACATTAGGGCACGATTCCGCGAATTGCCAAATATCAAATC-TCGTCTTC
1 GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAA-CATCGCCTTC
* *
8026542 GTTTTAAAGAATTTTTA
65 ATTTTAAAGGATTTTTA
8026559 AATGAATAAT
Statistics
Matches: 183, Mismatches: 27, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
130 32 0.17
131 30 0.16
132 120 0.66
133 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.28
Consensus pattern (132 bp):
GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCA
TTTTAAAGGATTTTTAGAAGACATGAACGAAATTCCAAAGGGACATTCGATCACTTTGAGCAAAA
GA
Found at i:8028791 original size:17 final size:18
Alignment explanation
Indices: 8028764--8028798 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8028754 TATTATTTGG
*
8028764 TTTGTTTGTTTTTTGTTT
1 TTTGTTTGTTTTGTGTTT
8028782 TTTG-TTGTTTTGTGTTT
1 TTTGTTTGTTTTGTGTTT
8028799 GTATGGGCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80
Consensus pattern (18 bp):
TTTGTTTGTTTTGTGTTT
Found at i:8029481 original size:131 final size:131
Alignment explanation
Indices: 8029088--8029511 Score: 609
Period size: 133 Copynumber: 3.2 Consensus size: 131
8029078 TCTGTTCTAT
* * * ** * *
8029088 TGCAGCTTCAAGGAGATAAGATCTGTAATTTTTAGCCTACTCCACTACAACTTTAGGGAGCTAGG
1 TGCAACTTCAGGGAGACAAGATCTACAATATTCAGCCTACTCCACTACAACTTTA-GGAGCTAGG
* * **
8029153 ATAGTGGCTTAAATCTGCTTCGCTGCATCTTCAGGAAGCCAAGATTCATCGTCTTTGATTTGCTA
65 AT-GTGGCTTAAATCTGCTTCGCTGCATCTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCC
8029218 CAC
129 CAC
* * *
8029221 TGCAACTTCAGGGAGACAAGATCTATAATCTTCAACCTACTCCACTACAACTTTAGGAAGCTAGG
1 TGCAACTTCAGGGAGACAAGATCTACAATATTCAGCCTACTCCACTACAACTTTAGG-AGCTAGG
* *
8029286 ATGGTGGCTTAAATCTGCTTCGCTGCATCTTCAGGAAGCCAAGATTTGTCGTTTTCGATTTGCCC
65 AT-GTGGCTTAAATCTGCTTCGCTGCATCTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCC
8029351 CAC
129 CAC
*
8029354 TGCAACTTCAGGGAGACAAGATCTACAATATTCAGCCTACTCCACTACAACTTTAGTGAGGTAGG
1 TGCAACTTCAGGGAGACAAGATCTACAATATTCAGCCTACTCCACTACAACTTTAG-GAGCTAGG
* *
8029419 ACT-T-GCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCC
65 A-TGTGGCTTAAATCTGCTTCGCTGCATCTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCC
8029482 CAC
129 CAC
8029485 TGCAACTTCAGGGAGACAAGATCTACA
1 TGCAACTTCAGGGAGACAAGATCTACA
8029512 TTTTGTTTCA
Statistics
Matches: 266, Mismatches: 22, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
131 85 0.32
132 3 0.01
133 176 0.66
134 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (131 bp):
TGCAACTTCAGGGAGACAAGATCTACAATATTCAGCCTACTCCACTACAACTTTAGGAGCTAGGA
TGTGGCTTAAATCTGCTTCGCTGCATCTTCAGGAAGCCAAGATTCGTCGTCTTCGATTTGCCCCA
C
Found at i:8030761 original size:6 final size:6
Alignment explanation
Indices: 8030752--8030808 Score: 82
Period size: 6 Copynumber: 9.7 Consensus size: 6
8030742 TGGCCTCTCC
*
8030752 TTTTCT TTTT-T TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TCTTCT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
8030799 TCTTT-T TTTT
1 T-TTTCT TTTT
8030809 GGAAGGTCTC
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
5 8 0.17
6 37 0.79
7 2 0.04
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:8033304 original size:19 final size:19
Alignment explanation
Indices: 8033280--8033344 Score: 80
Period size: 19 Copynumber: 3.4 Consensus size: 19
8033270 GGGGAAATTT
8033280 AATGCAAATGATGCAATGC
1 AATGCAAATGATGCAATGC
* *
8033299 AATGCAAAGGATGCCATGC
1 AATGCAAATGATGCAATGC
8033318 AATGCAAATGCATG-AGATG-
1 AATGCAAATG-ATGCA-ATGC
8033337 AATGCAAA
1 AATGCAAA
8033345 GGAAAGAAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
19 34 0.85
20 6 0.15
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.18
Consensus pattern (19 bp):
AATGCAAATGATGCAATGC
Found at i:8035193 original size:132 final size:131
Alignment explanation
Indices: 8034990--8035333 Score: 447
Period size: 132 Copynumber: 2.6 Consensus size: 131
8034980 CAACGAACGG
* * * * **
8034990 GAAATCGCAACCCAGCACGATAGGGCACGATTCC-CGAATTGCCAAAGATCGAGTATTACCTTCG
1 GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAATATCGCCTTCG
* *
8035054 TTTTAAAGATTTTTTAGAAGTCATGAACGAAATTCTAAAGGGACATTCGATTACTTTGAACAAAA
66 TTTTAAAGA-TTTTTAGAAGACATGAACGAAATTCTAAAGGGACATTCGATCACTTTGAACAAAA
8035119 GA
130 GA
* * * *
8035121 GAAATTGCAACCCAGCGCGTTAGGGCACGATGCCGCGAATTGTCAAATATCGAACATCGCCTTCG
1 GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAATATCGCCTTCG
* * * * * **
8035186 TTTTAAAGGATTTTTAGAAGACATGAACGAAATTTTGAAGGGATATTCGATCATTTTGAGCAAGC
66 TTTTAAA-GATTTTTAGAAGACATGAACGAAATTCTAAAGGGACATTCGATCACTTTGAACAAAA
*
8035251 GG
130 GA
* * *
8035253 GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAATATCGTCTTCG
1 GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAATATCGCCTTCG
8035318 TTTTAAAGAATTTTTA
66 TTTTAAAG-ATTTTTA
8035334 AATGAATAAT
Statistics
Matches: 183, Mismatches: 27, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
131 31 0.17
132 150 0.82
133 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (131 bp):
GAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAATATCGCCTTCG
TTTTAAAGATTTTTAGAAGACATGAACGAAATTCTAAAGGGACATTCGATCACTTTGAACAAAAG
A
Found at i:8045760 original size:35 final size:35
Alignment explanation
Indices: 8045720--8045788 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 35
8045710 ATTTACCAAG
8045720 TATAAATAATTAATAATAAATACCATATAATTTAA
1 TATAAATAATTAATAATAAATACCATATAATTTAA
** * * *
8045755 TATAAATAATTTGTAGTAAATACTATGTAATTTA
1 TATAAATAATTAATAATAAATACCATATAATTTA
8045789 GTTAACTATG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (35 bp):
TATAAATAATTAATAATAAATACCATATAATTTAA
Found at i:8045888 original size:24 final size:22
Alignment explanation
Indices: 8045861--8045910 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
8045851 TATTTAAACC
8045861 ATATTAGTAAAATAATATATAAAT
1 ATATT-GTAAAAT-ATATATAAAT
* * *
8045885 ATATTTTAAAATATATGTATAT
1 ATATTGTAAAATATATATAAAT
8045907 ATAT
1 ATAT
8045911 CCTAAAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 12 0.52
23 6 0.26
24 5 0.22
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (22 bp):
ATATTGTAAAATATATATAAAT
Found at i:8045916 original size:22 final size:23
Alignment explanation
Indices: 8045868--8045918 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
8045858 ACCATATTAG
**
8045868 TAAAATAATATATAAATATATTT
1 TAAAATAATATATAAATATATCC
* *
8045891 TAAAAT-ATATGTATATATATCC
1 TAAAATAATATATAAATATATCC
8045913 TAAAAT
1 TAAAAT
8045919 TAAAATAGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (23 bp):
TAAAATAATATATAAATATATCC
Found at i:8066180 original size:18 final size:18
Alignment explanation
Indices: 8066159--8066219 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
8066149 TATTATTTTA
8066159 CTTTTTATTACTGTGTTT
1 CTTTTTATTACTGTGTTT
* * *
8066177 CTTTTCAAATTATTAT-TTT
1 CTTTT--TATTACTGTGTTT
8066196 ACTTTTTATTACTGTGTTT
1 -CTTTTTATTACTGTGTTT
8066215 CTTTT
1 CTTTT
8066220 CTTTTTTTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
18 16 0.48
19 6 0.18
20 11 0.33
ACGTcount: A:0.16, C:0.11, G:0.07, T:0.66
Consensus pattern (18 bp):
CTTTTTATTACTGTGTTT
Found at i:8066194 original size:38 final size:38
Alignment explanation
Indices: 8066143--8066220 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
8066133 GACTTAGAGG
8066143 TCAAATTATTATTTTACTTTTTATTACTGTGTTTCTTT
1 TCAAATTATTATTTTACTTTTTATTACTGTGTTTCTTT
8066181 TCAAATTATTATTTTACTTTTTATTACTGTGTTTCTTT
1 TCAAATTATTATTTTACTTTTTATTACTGTGTTTCTTT
8066219 TC
1 TC
8066221 TTTTTTTTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.21, C:0.12, G:0.05, T:0.63
Consensus pattern (38 bp):
TCAAATTATTATTTTACTTTTTATTACTGTGTTTCTTT
Found at i:8066200 original size:20 final size:20
Alignment explanation
Indices: 8066143--8066201 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
8066133 GACTTAGAGG
8066143 TCAAATTATTATTTTACTTT
1 TCAAATTATTATTTTACTTT
* * *
8066163 T--TATTACTGTGTTT-CTTT
1 TCAAATTATTAT-TTTACTTT
8066181 TCAAATTATTATTTTACTTT
1 TCAAATTATTATTTTACTTT
8066201 T
1 T
8066202 TATTACTGTG
Statistics
Matches: 29, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
18 11 0.38
19 6 0.21
20 12 0.41
ACGTcount: A:0.24, C:0.10, G:0.03, T:0.63
Consensus pattern (20 bp):
TCAAATTATTATTTTACTTT
Found at i:8069257 original size:49 final size:48
Alignment explanation
Indices: 8069199--8069296 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 48
8069189 TAATATGTTA
*
8069199 ACTCTAGTATGCATGTCATCCTTTTATTTTAAATATTTTTATGTTAACT
1 ACTCTAGTATGCATGTCATCCTTTTATTTTAAACA-TTTTATGTTAACT
8069248 ACTCTAGTATGCATGTCATCCTTTTATTTTAAACATTTTATGTTAACT
1 ACTCTAGTATGCATGTCATCCTTTTATTTTAAACATTTTATGTTAACT
8069296 A
1 A
8069297 AATTATGATA
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 14 0.29
49 34 0.71
ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49
Consensus pattern (48 bp):
ACTCTAGTATGCATGTCATCCTTTTATTTTAAACATTTTATGTTAACT
Found at i:8070067 original size:16 final size:17
Alignment explanation
Indices: 8070039--8070070 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8070029 TAAAGTAAAT
8070039 AAAAGAAATTAAAAAGA
1 AAAAGAAATTAAAAAGA
8070056 AAAAGAAA-TAAAAAG
1 AAAAGAAATTAAAAAG
8070071 GTGGAACGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.09
Consensus pattern (17 bp):
AAAAGAAATTAAAAAGA
Found at i:8077645 original size:12 final size:12
Alignment explanation
Indices: 8077628--8077672 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
8077618 ACAGAGCAGG
8077628 GAAAGAAAGAA-A
1 GAAAGAAA-AAGA
8077640 GAAAGAAAAAGA
1 GAAAGAAAAAGA
8077652 GAAAGAAAAAGA
1 GAAAGAAAAAGA
*
8077664 -AAGGAAAAA
1 GAAAGAAAAA
8077673 TAGGGTTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
11 10 0.32
12 21 0.68
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
GAAAGAAAAAGA
Found at i:8083134 original size:37 final size:37
Alignment explanation
Indices: 8083038--8083142 Score: 113
Period size: 37 Copynumber: 2.8 Consensus size: 37
8083028 TTCTAATCAA
*
8083038 AACATGCCAATCGCTCATAAGAGCTAATCCATTTGAT
1 AACATGCCAATCGCTCATAAGAGCTAATCCACTTGAT
* * * *
8083075 AACACGCCAGTTGCGT-ATAAGAGCTCATCCACTTGAT
1 AACATGCCAATCGC-TCATAAGAGCTAATCCACTTGAT
* ** *
8083112 ATCATGCCAATCGCTCCGAAGAGCTAGTCCA
1 AACATGCCAATCGCTCATAAGAGCTAATCCA
8083143 ACCGAAAACA
Statistics
Matches: 53, Mismatches: 13, Indels: 4
0.76 0.19 0.06
Matches are distributed among these distances:
36 1 0.02
37 51 0.96
38 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (37 bp):
AACATGCCAATCGCTCATAAGAGCTAATCCACTTGAT
Found at i:8085500 original size:54 final size:55
Alignment explanation
Indices: 8085418--8085530 Score: 210
Period size: 54 Copynumber: 2.1 Consensus size: 55
8085408 GCTTGATTAG
8085418 ATCCATTAATTGAGTTTGTTGGGATTTATA-CTCAAAGGGTTCAATTGGACGTTT
1 ATCCATTAATTGAGTTTGTTGGGATTTATATCTCAAAGGGTTCAATTGGACGTTT
*
8085472 ATCCATTAATTGAGTTTGTTGGGATTTATATCTCAGAGGGTTCAATTGGACGTTT
1 ATCCATTAATTGAGTTTGTTGGGATTTATATCTCAAAGGGTTCAATTGGACGTTT
8085527 ATCC
1 ATCC
8085531 TTTTATCTAT
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
54 30 0.53
55 27 0.47
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.41
Consensus pattern (55 bp):
ATCCATTAATTGAGTTTGTTGGGATTTATATCTCAAAGGGTTCAATTGGACGTTT
Found at i:8093030 original size:30 final size:29
Alignment explanation
Indices: 8092963--8093032 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 29
8092953 TTTATATATA
* *
8092963 TATTTATATAATTTATTTATTTTAAATAT
1 TATTTATATAATTTATTTACTTTAAACAT
* *
8092992 T-TTGTATATTATTTATTTTACTTTAAACCT
1 TATT-TATATAATTTA-TTTACTTTAAACAT
8093022 TATTTATATAA
1 TATTTATATAA
8093033 AAAATATTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
28 2 0.06
29 11 0.33
30 18 0.55
31 2 0.06
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.60
Consensus pattern (29 bp):
TATTTATATAATTTATTTACTTTAAACAT
Found at i:8093102 original size:19 final size:19
Alignment explanation
Indices: 8093055--8093102 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
8093045 TTATTTGTAT
* * *
8093055 TATATAATATATTTTATTG
1 TATATAATTTATTATATTA
*
8093074 TATATTATTTATTATATTA
1 TATATAATTTATTATATTA
*
8093093 TGTATAATTT
1 TATATAATTT
8093103 TAAAATTTGT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
TATATAATTTATTATATTA
Found at i:8093157 original size:15 final size:15
Alignment explanation
Indices: 8093118--8093158 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
8093108 TTTGTAAATT
8093118 ATTATTAAATATTAC
1 ATTATTAAATATTAC
* *
8093133 ATTTTTATATA-T-C
1 ATTATTAAATATTAC
8093146 ATTATTAAATATT
1 ATTATTAAATATT
8093159 TAGTATGTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTATTAAATATTAC
Found at i:8093696 original size:119 final size:112
Alignment explanation
Indices: 8093551--8093764 Score: 266
Period size: 112 Copynumber: 1.8 Consensus size: 112
8093541 GTTATTTTAG
* * * * **
8093551 TTATATTTGCATGAAATATTATTGTATATATATTATGTAATTTATATTGTTATATTCATTGTTTT
1 TTATATCTGCATGAAATATTA----ATGTATATTATGTAATTCATATCGTTAT-TT-ATCATTTT
* * *
8093616 CTATGTTGTATTTTGCATGAAATGTTAATGTATGTATATTTATGTTATTTATGA
60 CTATATTATA-TTTGCATGAAATGTTAAAGTATGTATATTTATGTTATTTATGA
* *
8093670 TTATATCTGCATGAAATGTTAATGTATATTATGTAATTCATGTCGTTATTTATCATTTTCTATAT
1 TTATATCTGCATGAAATATTAATGTATATTATGTAATTCATATCGTTATTTATCATTTTCTATAT
8093735 TATATTTGCATGAAATGTTAAAGTATGTAT
66 TATATTTGCATGAAATGTTAAAGTATGTAT
8093765 CATGTAGTTT
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
112 25 0.30
113 14 0.17
114 2 0.02
115 24 0.29
119 19 0.23
ACGTcount: A:0.30, C:0.05, G:0.13, T:0.52
Consensus pattern (112 bp):
TTATATCTGCATGAAATATTAATGTATATTATGTAATTCATATCGTTATTTATCATTTTCTATAT
TATATTTGCATGAAATGTTAAAGTATGTATATTTATGTTATTTATGA
Found at i:8103298 original size:40 final size:40
Alignment explanation
Indices: 8103227--8103337 Score: 172
Period size: 40 Copynumber: 2.8 Consensus size: 40
8103217 TATTTAGCAC
* * *
8103227 AGCCTGCAGGTTTTTAA-CCCGGATGTC-ATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGAT-ACAATTCCAGCACGA
8103266 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
8103306 AGCCTGCGGGTCTTTAAGCCCGGATACAATTC
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTC
8103338 GGGTCTTTAA
Statistics
Matches: 67, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
39 16 0.24
40 51 0.76
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:8103346 original size:25 final size:25
Alignment explanation
Indices: 8103312--8103362 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
8103302 ACGAAGCCTG
8103312 CGGGTCTTTAAGCCCGGATACAATT
1 CGGGTCTTTAAGCCCGGATACAATT
8103337 CGGGTCTTTAAGCCCGGATACAATT
1 CGGGTCTTTAAGCCCGGATACAATT
8103362 C
1 C
8103363 CACATCAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (25 bp):
CGGGTCTTTAAGCCCGGATACAATT
Found at i:8110226 original size:43 final size:45
Alignment explanation
Indices: 8110171--8110266 Score: 126
Period size: 43 Copynumber: 2.2 Consensus size: 45
8110161 AGCCACTAGC
*
8110171 CTTATCTCTCTGACGTAGCAA-AAGAGCAGATTGAAGAAT-AAG-T
1 CTTATCTCTCTGACGTAGCAAGAA-AGCAGACTGAAGAATGAAGAT
* * *
8110214 CTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGAT
1 CTTATCTCTCTGACGTAGCAAGAAAGCAGACTGAAGAATGAAGAT
8110259 CTTATCTC
1 CTTATCTC
8110267 CCTAAAGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
43 32 0.71
44 5 0.11
45 8 0.18
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (45 bp):
CTTATCTCTCTGACGTAGCAAGAAAGCAGACTGAAGAATGAAGAT
Found at i:8110432 original size:176 final size:177
Alignment explanation
Indices: 8110122--8110881 Score: 1044
Period size: 176 Copynumber: 4.3 Consensus size: 177
8110112 GCAGATTGAA
* * * *
8110122 GAATCTTATCTCCATGTATTGGCAATGGAGCAAGATTTAAGCCACTAGCCTTATCTCTCTGACGT
1 GAATCTTATCTCCATGTATCGGCAATGGAGC-AGATTTTAGCCACCAGCCTTATCTCTCTGAGGT
* * * *
8110187 AGCAAAAGAGCAGATTGAAGAATAAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGAT
65 AGCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTGAAGAT
* * * *
8110252 TGAAGATCTTATCTCCCTAAAGTTACAGCGGAGTAGATCGAAGATGGT
130 TAAAGATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATCGAAGATGGC
8110300 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTA-CCACCAGCCTTATCTCTCTGAGGTA
1 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
* * * * *
8110364 GCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTGAGGTAGCAAAAAAGCAAACTAAAAATT
66 GCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTGAAGATT
* * * *
8110429 GAAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGATGGT
131 AAAGATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATCGAAGATGGC
*
8110476 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTA-CCATCAGCCTTATCTCTCTGAGGTA
1 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
* *
8110540 GCAAGAGAGCAGGTTGAAGAATGAGTTTTATCTTTCTAAGGTAGTAAGAAAGCAGACTGAAGATT
66 GCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTGAAGATT
* * *
8110605 AAAGATCTTATCTCCCTAAAGTTGCAGCGGAGTAGATCCAAAATGGC
131 AAAGATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATCGAAGATGGC
* * *
8110652 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTATCTGAGATA
1 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
* * * *
8110717 GCAAGAGAGCAGGTTGAAGAATTGAGTTTTATCTTCCTAAGGTAGCAAGGAAGTAGACTGAAGAT
66 GCAAGAGAGCAGGTTGAAGAA-TGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTGAAGAT
* * ** * * * *
8110782 TAAAGATTTTATCT-CCTTAAGCAGTAGCAGAACAGATTGAA-A-GGC
130 TAAAGATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATCGAAGATGGC
* * * * *
8110827 GGATCTTATCTCCATATATCGACAATGGAGCAGATTTTAGCCACTAGACTTATCT
1 GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCT
8110882 TTTTCAGGAA
Statistics
Matches: 526, Mismatches: 54, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
175 52 0.10
176 324 0.62
177 68 0.13
178 82 0.16
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (177 bp):
GAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTA
GCAAGAGAGCAGGTTGAAGAATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGCAGACTGAAGATT
AAAGATCTTATCTCCCTAAAGTTGCAGCGGAGCAGATCGAAGATGGC
Found at i:8110527 original size:88 final size:87
Alignment explanation
Indices: 8110259--8110535 Score: 206
Period size: 88 Copynumber: 3.1 Consensus size: 87
8110249 GATTGAAGAT
* * *
8110259 CTTATCTCCCTAAAGTTACAGCGGAGTAGATCGAAGATGGTGAATCTTATCTCCATGTATCGGCA
1 CTTATCTCCCTGAAGTTGCAG-GGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCGGCA
*
8110324 ATGGAGCAGATTTTACCACCAGC
65 ATGGAGCAGATTTTACCATCAGC
* * * * * * * * * *
8110347 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA--ATGAGTCTTATCTTTC-TG-AGGT-A
1 CTTATCTCCCTGAAGTTGC-AGGGAGCAGATCGAAGATGGTGAATCTTATC-TCCATGTA--TCG
*** ** * ** * *
8110407 GCAAAAAAGCA-AACTAAAAATTGAAGAT
62 GCAATGGAGCAGATTTTACCA-T-CAG-C
8110435 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCGGCA
1 CTTATCTCCCTGAAGTTGCAG-GGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCGGCA
8110500 ATGGAGCAGATTTTACCATCAGC
65 ATGGAGCAGATTTTACCATCAGC
*
8110523 CTTATCTCTCTGA
1 CTTATCTCCCTGA
8110536 GGTAGCAAGA
Statistics
Matches: 130, Mismatches: 45, Indels: 28
0.64 0.22 0.14
Matches are distributed among these distances:
85 5 0.04
86 20 0.15
87 7 0.05
88 65 0.50
89 7 0.05
90 21 0.16
91 5 0.04
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (87 bp):
CTTATCTCCCTGAAGTTGCAGGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCGGCAA
TGGAGCAGATTTTACCATCAGC
Found at i:8113434 original size:8 final size:8
Alignment explanation
Indices: 8113421--8113451 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
8113411 AATAGTTTCA
8113421 AATTCATC
1 AATTCATC
8113429 AATTCATC
1 AATTCATC
8113437 AATTCATC
1 AATTCATC
8113445 AATTCAT
1 AATTCAT
8113452 ATATTATATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (8 bp):
AATTCATC
Found at i:8118969 original size:28 final size:27
Alignment explanation
Indices: 8118929--8119009 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 27
8118919 TAACGAGCTC
*
8118929 TCTATTTTGATAAGCACTTCGGTGTTGT
1 TCTATTCTGATAAGCACTT-GGTGTTGT
*
8118957 TCTATTCTGATAAGTACATTGGTGTTGT
1 TCTATTCTGATAAGCAC-TTGGTGTTGT
8118985 TCTATTCT-ATTAACGCACTTTGGTG
1 TCTATTCTGA-TAA-GCAC-TTGGTG
8119010 CCCTCTGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 1 0.02
28 34 0.74
29 11 0.24
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.46
Consensus pattern (27 bp):
TCTATTCTGATAAGCACTTGGTGTTGT
Found at i:8126592 original size:26 final size:26
Alignment explanation
Indices: 8126563--8126670 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
8126553 TGGTACAAAT
8126563 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
8126589 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8126615 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
8126641 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
8126667 TGAT
1 TGAT
8126671 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:8128186 original size:26 final size:26
Alignment explanation
Indices: 8128157--8128209 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
8128147 TTTACAGTTT
8128157 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
8128183 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
8128209 T
1 T
8128210 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:8134741 original size:17 final size:17
Alignment explanation
Indices: 8134712--8134744 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8134702 CTTGAACATA
8134712 AACCAAATATTTTAAGC
1 AACCAAATATTTTAAGC
8134729 AACCGAAAT-TTTTAAG
1 AACC-AAATATTTTAAG
8134745 ACCGAGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.30
Consensus pattern (17 bp):
AACCAAATATTTTAAGC
Found at i:8142570 original size:50 final size:49
Alignment explanation
Indices: 8142511--8142609 Score: 171
Period size: 50 Copynumber: 2.0 Consensus size: 49
8142501 CAGCCACTGC
**
8142511 TAATCAACTACTCATGGAGGGAGTTAGAGATAAAGATAACAAATAGTAAG
1 TAATCAACTACTCATGGAGACAGTTAGAGAT-AAGATAACAAATAGTAAG
8142561 TAATCAACTACTCATGGAGACAGTTAGAGATAAGATAACAAATAGTAAG
1 TAATCAACTACTCATGGAGACAGTTAGAGATAAGATAACAAATAGTAAG
8142610 GAAGAGGATA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 18 0.38
50 29 0.62
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.22
Consensus pattern (49 bp):
TAATCAACTACTCATGGAGACAGTTAGAGATAAGATAACAAATAGTAAG
Found at i:8142917 original size:23 final size:23
Alignment explanation
Indices: 8142891--8142947 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
8142881 AATTATTGAT
8142891 TATTTTTATTTAAATATTTTAAA
1 TATTTTTATTTAAATATTTTAAA
* * *
8142914 TATTTTGATCATCAATATTTTAAA
1 TATTTTTAT-TTAAATATTTTAAA
8142938 -ATTTTCTATT
1 TATTTT-TATT
8142948 ATAGTTATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
23 13 0.48
24 14 0.52
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (23 bp):
TATTTTTATTTAAATATTTTAAA
Found at i:8143208 original size:20 final size:20
Alignment explanation
Indices: 8143182--8143230 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
8143172 AAAGCTTTTT
*
8143182 TTATAAAAATACATA-AAAT
1 TTATAAAAATACATACAAAA
8143201 TCTATAAAAATACATACAAAA
1 T-TATAAAAATACATACAAAA
8143222 TTATAAAAA
1 TTATAAAAA
8143231 ATACTTATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 1 0.04
20 22 0.81
21 4 0.15
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (20 bp):
TTATAAAAATACATACAAAA
Found at i:8143231 original size:22 final size:20
Alignment explanation
Indices: 8143186--8143231 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
8143176 CTTTTTTTAT
* *
8143186 AAAAATACATAAAATTCTAT
1 AAAAATACATAAAATTATAA
8143206 AAAAATACATACAAAATTATAA
1 AAAAATACAT--AAAATTATAA
8143228 AAAA
1 AAAA
8143232 TACTTATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 10 0.45
22 12 0.55
ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAATACATAAAATTATAA
Found at i:8144998 original size:10 final size:9
Alignment explanation
Indices: 8144933--8145135 Score: 63
Period size: 10 Copynumber: 20.7 Consensus size: 9
8144923 AAAACACACC
8144933 ATTATAAAA
1 ATTATAAAA
8144942 ATTATTTAAAAA
1 ATTA--T-AAAA
*
8144954 ATTATAAAT
1 ATTATAAAA
8144963 A-TA-AAAA
1 ATTATAAAA
* *
8144970 ATCACAAAA
1 ATTATAAAA
**
8144979 ACTGCTAAAA
1 A-TTATAAAA
8144989 ATTATAAAA
1 ATTATAAAA
* *
8144998 ATTATTAGCGAT
1 ATTA-TA--AAA
8145010 ATTACTAAAA
1 ATTA-TAAAA
*
8145020 A--ACAAATA
1 ATTATAAA-A
8145028 ATTATAGAAA
1 ATTATA-AAA
8145038 ATTATAAAA
1 ATTATAAAA
* * *
8145047 ATTTCTGGAGA
1 A-TTAT-AAAA
*
8145058 ATCATAAATA
1 ATTATAAA-A
8145068 ATAATTATAAATA
1 AT--T-ATAAA-A
8145081 ATTATAAAA
1 ATTATAAAA
*
8145090 ATGATAAAAA
1 ATTAT-AAAA
*
8145100 ATTAAAAAA
1 ATTATAAAA
8145109 ATTATAGAAA
1 ATTATA-AAA
8145119 ATTATGAAAA
1 ATTAT-AAAA
8145129 ATATATA
1 AT-TATA
8145136 TTTTTTCATT
Statistics
Matches: 144, Mismatches: 27, Indels: 45
0.67 0.12 0.21
Matches are distributed among these distances:
7 7 0.05
8 6 0.04
9 42 0.29
10 54 0.38
11 11 0.08
12 15 0.10
13 9 0.06
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.31
Consensus pattern (9 bp):
ATTATAAAA
Found at i:8145049 original size:19 final size:19
Alignment explanation
Indices: 8145027--8145135 Score: 76
Period size: 19 Copynumber: 5.4 Consensus size: 19
8145017 AAAAACAAAT
8145027 AATTATAGAAAATTATAAA
1 AATTATAGAAAATTATAAA
* * * *
8145046 AATTTCTGGAGAATCATAAATAAT
1 AA-TTAT--AGAA-AAT-TATAAA
8145070 AATTATA-AATAATTATAAA
1 AATTATAGAA-AATTATAAA
* * *
8145089 AATGATAAAAAATTAAAAA
1 AATTATAGAAAATTATAAA
8145108 AATTATAGAAAATTATGAAA
1 AATTATAGAAAATTAT-AAA
8145128 AATATATA
1 AAT-TATA
8145136 TTTTTTCATT
Statistics
Matches: 69, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
19 33 0.48
20 16 0.23
21 5 0.07
22 4 0.06
23 5 0.07
24 6 0.09
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (19 bp):
AATTATAGAAAATTATAAA
Found at i:8149755 original size:28 final size:28
Alignment explanation
Indices: 8149715--8149770 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
8149705 CATGTTTGGA
8149715 GATAGATTTCACTTTCATAAAATCTGCT
1 GATAGATTTCACTTTCATAAAATCTGCT
8149743 GATAGATTTCACTTTCATAAAATCTGCT
1 GATAGATTTCACTTTCATAAAATCTGCT
8149771 TTTCAATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (28 bp):
GATAGATTTCACTTTCATAAAATCTGCT
Found at i:8150380 original size:24 final size:25
Alignment explanation
Indices: 8150337--8150386 Score: 93
Period size: 24 Copynumber: 2.0 Consensus size: 25
8150327 AAAATGATTG
8150337 TTTGATGAAATTTTATATACCACTA
1 TTTGATGAAATTTTATATACCACTA
8150362 TTTGATGAAA-TTTATATACCACTA
1 TTTGATGAAATTTTATATACCACTA
8150386 T
1 T
8150387 CTAAAAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (25 bp):
TTTGATGAAATTTTATATACCACTA
Found at i:8153830 original size:19 final size:19
Alignment explanation
Indices: 8153787--8153832 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
8153777 AAATGAAAAT
* *
8153787 TAAATTAAAGTTAATTAAGC
1 TAAATT-AAGGTAATTAAAC
*
8153807 CAAATTAAGGTAATTAAAC
1 TAAATTAAGGTAATTAAAC
8153826 TAAATTA
1 TAAATTA
8153833 CTTAAATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.33
Consensus pattern (19 bp):
TAAATTAAGGTAATTAAAC
Found at i:8155853 original size:29 final size:30
Alignment explanation
Indices: 8155811--8155869 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
8155801 GTAGATTGTA
* *
8155811 AAAGGTTTTTAGTTGAGCCACAAAA-CTAG
1 AAAGGGTTCTAGTTGAGCCACAAAAGCTAG
* *
8155840 AAAGGGTTCTAGTTTAGCCATAAAAGCTAG
1 AAAGGGTTCTAGTTGAGCCACAAAAGCTAG
8155870 GGTGAAAGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (30 bp):
AAAGGGTTCTAGTTGAGCCACAAAAGCTAG
Found at i:8160465 original size:10 final size:10
Alignment explanation
Indices: 8160450--8160504 Score: 55
Period size: 10 Copynumber: 5.9 Consensus size: 10
8160440 TAATTTTTTA
8160450 AAAATATATT
1 AAAATATATT
*
8160460 AAAATAAATT
1 AAAATATATT
*
8160470 AAAAT-TACT
1 AAAATATATT
8160479 AAAA-ATA-T
1 AAAATATATT
*
8160487 AAAATGTATT
1 AAAATATATT
8160497 AAAA-ATAT
1 AAAATATAT
8160505 AAATAATTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
8 5 0.14
9 13 0.35
10 19 0.51
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAATATATT
Found at i:8160491 original size:17 final size:18
Alignment explanation
Indices: 8160465--8160507 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
8160455 ATATTAAAAT
8160465 AAAT-TAAAAT-TACTAA
1 AAATATAAAATGTACTAA
*
8160481 AAATATAAAATGTATTAA
1 AAATATAAAATGTACTAA
8160499 AAATATAAA
1 AAATATAAA
8160508 TAATTATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 4 0.17
17 6 0.25
18 14 0.58
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (18 bp):
AAATATAAAATGTACTAA
Found at i:8160501 original size:18 final size:17
Alignment explanation
Indices: 8160450--8160527 Score: 66
Period size: 19 Copynumber: 4.2 Consensus size: 17
8160440 TAATTTTTTA
*
8160450 AAAATATATTAAAATAAATT
1 AAAAT-TATTAAAA-ATA-T
*
8160470 AAAATTACTAAAAATAT
1 AAAATTATTAAAAATAT
8160487 AAAATGTATTAAAAATAT
1 AAAAT-TATTAAAAATAT
*
8160505 AAATAATTATTATAAAAAAT
1 -AA-AATTATTA-AAAATAT
8160525 AAA
1 AAA
8160528 TAAATATTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
17 6 0.12
18 14 0.28
19 16 0.32
20 14 0.28
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (17 bp):
AAAATTATTAAAAATAT
Found at i:8160510 original size:22 final size:22
Alignment explanation
Indices: 8160485--8160565 Score: 62
Period size: 20 Copynumber: 3.6 Consensus size: 22
8160475 TACTAAAAAT
*
8160485 ATAAAATGTATTA-AAAATATAA
1 ATAAAAT-TATTATAAAAAATAA
8160507 AT--AATTATTATAAAAAATAA
1 ATAAAATTATTATAAAAAATAA
* *
8160527 ATAAATATT-TTATATTAATATTAA
1 ATAAA-ATTATTATA--AAAAATAA
8160551 ATAAAAATTATTATA
1 AT-AAAATTATTATA
8160566 TTAATATGAA
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
19 5 0.10
20 13 0.27
22 8 0.17
23 3 0.06
24 11 0.23
25 8 0.17
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (22 bp):
ATAAAATTATTATAAAAAATAA
Found at i:8160513 original size:37 final size:38
Alignment explanation
Indices: 8160450--8160527 Score: 88
Period size: 37 Copynumber: 2.1 Consensus size: 38
8160440 TAATTTTTTA
* *
8160450 AAAATATATTAAAATAAATTAAAATTACTA-AAAATAT
1 AAAATATATTAAAATAAATAAAAATTACTATAAAAAAT
* * *
8160487 AAAATGTATTAAAA-ATATAAATAATTATTATAAAAAAT
1 AAAATATATTAAAATAAATAAA-AATTACTATAAAAAAT
8160525 AAA
1 AAA
8160528 TAAATATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
36 5 0.15
37 20 0.59
38 9 0.26
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (38 bp):
AAAATATATTAAAATAAATAAAAATTACTATAAAAAAT
Found at i:8160526 original size:20 final size:19
Alignment explanation
Indices: 8160456--8160535 Score: 67
Period size: 20 Copynumber: 4.2 Consensus size: 19
8160446 TTTAAAAATA
*
8160456 TATTAAAATAAATTAA-AAT
1 TATTAAAA-AAATAAATAAT
* *
8160475 TACTAAAAATAT-AA-AAT
1 TATTAAAAAAATAAATAAT
*
8160492 GTATTAAAAATATAAATAAT
1 -TATTAAAAAAATAAATAAT
*
8160512 TATTATAAAAAATAAATAAA
1 TATTA-AAAAAATAAATAAT
8160532 TATT
1 TATT
8160536 TTATATTAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
17 5 0.10
18 14 0.27
19 14 0.27
20 19 0.37
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (19 bp):
TATTAAAAAAATAAATAAT
Found at i:8160530 original size:24 final size:25
Alignment explanation
Indices: 8160496--8160580 Score: 74
Period size: 24 Copynumber: 3.6 Consensus size: 25
8160486 TAAAATGTAT
8160496 TAAAAAT--ATAAATAATTATTATA
1 TAAAAATAAATAAATAATTATTATA
8160519 -AAAAATAAATAAAT-ATT-TTATA
1 TAAAAATAAATAAATAATTATTATA
* *
8160541 TTAATATTAAATAAA-AATTATTATA
1 -TAAAAATAAATAAATAATTATTATA
* *
8160566 TTAATATGAAATAAA
1 TAAAAAT-AAATAAA
8160581 ATAACTCTCT
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
22 11 0.22
23 3 0.06
24 23 0.47
25 12 0.24
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (25 bp):
TAAAAATAAATAAATAATTATTATA
Found at i:8160569 original size:25 final size:25
Alignment explanation
Indices: 8160503--8160581 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 25
8160493 TATTAAAAAT
* *
8160503 ATAAATAATTATTATA--AAAAATAA
1 ATAAA-AATTATTATATTAATATTAA
*
8160527 ATAAATATT-TTATATTAATATTAA
1 ATAAAAATTATTATATTAATATTAA
*
8160551 ATAAAAATTATTATATTAATATGAA
1 ATAAAAATTATTATATTAATATTAA
8160576 ATAAAA
1 ATAAAA
8160582 TAACTCTCTC
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
22 5 0.11
23 3 0.06
24 19 0.40
25 20 0.43
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.39
Consensus pattern (25 bp):
ATAAAAATTATTATATTAATATTAA
Found at i:8162201 original size:20 final size:20
Alignment explanation
Indices: 8162176--8162213 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8162166 AGAGAGTTTA
8162176 TTTTATTTTAATA-TAATAAG
1 TTTTA-TTTAATATTAATAAG
8162196 TTTTATTTAATATTAATA
1 TTTTATTTAATATTAATA
8162214 TAAAAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
TTTTATTTAATATTAATAAG
Found at i:8162203 original size:25 final size:25
Alignment explanation
Indices: 8162172--8162234 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
8162162 TGGGAGAGAG
* * *
8162172 TTTATTTTATTTTAATATAATAAGT
1 TTTATTTAATTTTAATATAAAAAAT
*
8162197 TTTATTTAATATTAATATAAAAAAT
1 TTTATTTAATTTTAATATAAAAAAT
8162222 TTTATTTAATTTT
1 TTTATTTAATTTT
8162235 TATAATTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59
Consensus pattern (25 bp):
TTTATTTAATTTTAATATAAAAAAT
Found at i:8162242 original size:9 final size:10
Alignment explanation
Indices: 8162228--8162281 Score: 53
Period size: 9 Copynumber: 5.7 Consensus size: 10
8162218 AAATTTTATT
8162228 TAATTTTT-A
1 TAATTTTTAA
8162237 TAATTTTTAA
1 TAATTTTTAA
8162247 TAA-TTTTAA
1 TAATTTTTAA
* *
8162256 TTTACTTTTAA
1 -TAATTTTTAA
8162267 T-ATTTTTAA
1 TAATTTTTAA
8162276 -AATTTT
1 TAATTTT
8162282 AAAATATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 26 0.67
10 7 0.18
11 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:8162251 original size:29 final size:27
Alignment explanation
Indices: 8162196--8162282 Score: 88
Period size: 25 Copynumber: 3.2 Consensus size: 27
8162186 ATATAATAAG
* **
8162196 TTTTATTTAATATTAATA--TAAAAAA
1 TTTTATTTAATTTTAATATTTTTAAAA
*
8162221 TTTTATTTAATTTTTATAATTTTTAATAA
1 TTTTATTTAATTTTAAT-ATTTTTAA-AA
*
8162250 TTTTAATTTACTTTTAATATTTTTAAAA
1 TTTT-ATTTAATTTTAATATTTTTAAAA
8162278 TTTTA
1 TTTTA
8162283 AAATATTTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
25 15 0.29
26 1 0.02
27 1 0.02
28 9 0.18
29 14 0.27
30 11 0.22
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (27 bp):
TTTTATTTAATTTTAATATTTTTAAAA
Found at i:8163232 original size:34 final size:34
Alignment explanation
Indices: 8163189--8163254 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
8163179 GCGCCATATG
8163189 GGTGAAACATGTAAGATGTTCAATGATCAAAATA
1 GGTGAAACATGTAAGATGTTCAATGATCAAAATA
*
8163223 GGTGAAACATGTAAGATGTTCAATGATTAAAA
1 GGTGAAACATGTAAGATGTTCAATGATCAAAA
8163255 GATGATGTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.44, C:0.08, G:0.21, T:0.27
Consensus pattern (34 bp):
GGTGAAACATGTAAGATGTTCAATGATCAAAATA
Found at i:8177936 original size:43 final size:43
Alignment explanation
Indices: 8177854--8177937 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
8177844 ATATATGTGT
* * * * *
8177854 CATCCGAGCTCGTTGAGAGGTTCGAGTTCCTTATGGATGCGAG
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATAGATGCGAG
*
8177897 CATCCGAGCTCATTGAGTGGTCCGAGTTCATAATAGATGCG
1 CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATAGATGCG
8177938 GTACGTGTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.27
Consensus pattern (43 bp):
CATCCGAGCTCATTGAGAGGTCCGAGTTCATAATAGATGCGAG
Found at i:8179910 original size:26 final size:26
Alignment explanation
Indices: 8179881--8179933 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
8179871 GCAAATTTAA
8179881 CATGTTTTAAAATCCCCCCTACTTAG
1 CATGTTTTAAAATCCCCCCTACTTAG
8179907 CATGTTTTAAAATCCCCCCTACTTAG
1 CATGTTTTAAAATCCCCCCTACTTAG
8179933 C
1 C
8179934 CTATACGTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (26 bp):
CATGTTTTAAAATCCCCCCTACTTAG
Found at i:8186242 original size:41 final size:41
Alignment explanation
Indices: 8186185--8186266 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
8186175 AAGTAACAGT
*
8186185 GTATCACCGGTGTCTCCTAAGCAATCAACAACACCACCTTC
1 GTATCACCAGTGTCTCCTAAGCAATCAACAACACCACCTTC
8186226 GTATCACCAGTGTCTCCTAAGCAATCAACAACACCACCTTC
1 GTATCACCAGTGTCTCCTAAGCAATCAACAACACCACCTTC
8186267 ACCTGTTAGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.30, C:0.37, G:0.11, T:0.22
Consensus pattern (41 bp):
GTATCACCAGTGTCTCCTAAGCAATCAACAACACCACCTTC
Found at i:8187453 original size:201 final size:199
Alignment explanation
Indices: 8187040--8187667 Score: 678
Period size: 201 Copynumber: 3.2 Consensus size: 199
8187030 AAGTTTTGGA
* * * * * *
8187040 TTTAATTTTTGAAATAATTTGGTACATTAACTTTTATAATGTCATTG-CTAGTCTAAATACTCCA
1 TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGTCATAGTC-A-CCTAAATACTTCA
* * * ** *
8187104 TTCTGATTAAAATGTGGACGTGCATGTACCCAAAT--AT-ACA----ACTT-TTACTTCTTTGAG
64 TTCTGATTAAAATGTTGACGTACACGTGTCCAAATACATGACATTTTACTTCTT-CTTTTTTGAG
* * * * *
8187161 ATTATATAATAATGGTCAAATTTT-AATTTTGGT-TCATAT-ATTATGCTCAAATATGGAATTTA
128 ATTACATAACAATGGTC-AATTTTCAATTTTGGTCTC-TATGA-TATGCTCAATTTTGAAATTTA
8187223 ATCTCTATAC
190 ATCTCTATAC
** * *
8187233 TTTACGTTTTGATATAATTTGGTACCTCAACTTTTATTATGTCATAGTCACACTAAATACTTCAT
1 TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGTCATAGTCAC-CTAAATACTTCAT
* *
8187298 TCTGATTAAAATGTTGACATACACGTGTCCAAATACATGACATTTTACTTCTTCTTTTTTTTAGA
65 TCTGATTAAAATGTTGACGTACACGTGTCCAAATACATGACATTTTACTTCTTC-TTTTTTGAGA
8187363 TTACATAACAATGGTCAATTTTCAATTTTGGTCTCTATGATATGCTCAATTTTGAAATTTAATCT
129 TTACATAACAATGGTCAATTTTCAATTTTGGTCTCTATGATATGCTCAATTTTGAAATTTAATCT
*
8187428 CTATAT
194 CTATAC
* **
8187434 TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGCCATAGTCATCCTAAATGA-TTTG
1 TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGTCATAGTCA-CCTAAAT-ACTTCA
* * * *
8187498 TTCTAATTAAAATGTTGATGTACACAG-GTCCAAATACACGACCTTTTA---CTTCTTTTTTGAG
64 TTCTGATTAAAATGTTGACGTACAC-GTGTCCAAATACATGACATTTTACTTCTTCTTTTTTGAG
* * * * *
8187559 ACTACATATAACAATGGTCAAATTTCAAATTTGGTCCCCATGATATGCTCAATTTTGAAATTTAA
128 ATTAC--ATAACAATGGTCAATTTTCAATTTTGGTCTCTATGATATGCTCAATTTTGAAATTTAA
*
8187624 TCTTTATAC
191 TCTCTATAC
*
8187633 TTTAATTTTTGACATAATTTGGTACCTTAACTTTT
1 TTTAATTTTTGACATAATTTGGTACCTCAACTTTT
8187668 TTCTTGTCAT
Statistics
Matches: 372, Mismatches: 44, Indels: 32
0.83 0.10 0.07
Matches are distributed among these distances:
193 81 0.22
194 1 0.00
195 2 0.01
196 3 0.01
197 12 0.03
198 4 0.01
199 95 0.26
200 11 0.03
201 157 0.42
202 6 0.02
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43
Consensus pattern (199 bp):
TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGTCATAGTCACCTAAATACTTCATT
CTGATTAAAATGTTGACGTACACGTGTCCAAATACATGACATTTTACTTCTTCTTTTTTGAGATT
ACATAACAATGGTCAATTTTCAATTTTGGTCTCTATGATATGCTCAATTTTGAAATTTAATCTCT
ATAC
Found at i:8191842 original size:46 final size:46
Alignment explanation
Indices: 8191792--8191964 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
8191782 TGGTTGAGCA
8191792 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
8191838 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
8191883 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
8191931 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
8191965 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Done.