Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 242 of 279
Found at i:78661977 original size:81 final size:81
Alignment explanation
Indices: 78661114--78661957 Score: 1679
Period size: 81 Copynumber: 10.4 Consensus size: 81
78661104 CGCTGACTCA
78661114 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78661179 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78661195 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78661260 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78661276 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78661341 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78661357 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78661422 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78661438 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78661503 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78661519 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78661584 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78661600 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78661665 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78661681 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78661746 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78661762 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78661827 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78661843 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78661908 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
*
78661924 AAAAGCCCTTTGAGACCAAGCTCGGATTATGACA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACA
78661958 CTGGCTCAAA
Statistics
Matches: 762, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 762 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (81 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
GTTATGACACTGGCTT
Found at i:78664094 original size:37 final size:37
Alignment explanation
Indices: 78664044--78664117 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
78664034 TCTCGTTTAC
* *
78664044 TCGGCATTTGCCCAAGTGACGTCTTCCACATTCCGAA
1 TCGGCATTCGCCCAAATGACGTCTTCCACATTCCGAA
*
78664081 TCGGCATTCGCCCAAATGACGTCTTCCACATTGCGAA
1 TCGGCATTCGCCCAAATGACGTCTTCCACATTCCGAA
78664118 CACTCCGGTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (37 bp):
TCGGCATTCGCCCAAATGACGTCTTCCACATTCCGAA
Found at i:78671462 original size:47 final size:47
Alignment explanation
Indices: 78671395--78671552 Score: 151
Period size: 46 Copynumber: 3.3 Consensus size: 47
78671385 AGAGATATAC
*
78671395 GGGACATGCATCGGTC-TTGAGATATACAAGCTAGTGTAAGATAGTCT
1 GGGACATGCATC-GACATTGAGATATACAAGCTAGTGTAAGATAGTCT
* ** * * * *
78671442 AGGACATGCATCGACATTGAGA-CGA-GAGCTACTATAAGACATGTCT
1 GGGACATGCATCGACATTGAGATATACAAGCTAGTGTAAGATA-GTCT
* * * *
78671488 GGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACTTGTCT
1 GGGACATGCATCGACATTGAGATATACAAGCTAGTGTAAGA-TAGTCT
78671536 GGGACATGGCATCGACA
1 GGGACAT-GCATCGACA
78671553 CCGATAGATG
Statistics
Matches: 84, Mismatches: 21, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
45 12 0.14
46 25 0.30
47 18 0.21
48 22 0.26
49 7 0.08
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (47 bp):
GGGACATGCATCGACATTGAGATATACAAGCTAGTGTAAGATAGTCT
Found at i:78671469 original size:93 final size:95
Alignment explanation
Indices: 78671372--78671552 Score: 242
Period size: 93 Copynumber: 1.9 Consensus size: 95
78671362 GCCACATTAT
* * * * *
78671372 GAGAGCCAGTGCAAGAGATATAC-GGGACATGCATCGGTCTTGAGATATACAAGCTAGTGTAAGA
1 GAGAGCCACTACAAGACATAT-CTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGA
78671436 -TAGTCTAGGACAT-GCATCGACATTGAGAC
65 CTAGTCTAGGACATGGCATCGACATTGAGAC
* * *
78671465 GAGAGCTACTATAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGAC
1 GAGAGCCACTACAAGACATATCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGAC
* *
78671530 TTGTCTGGGACATGGCATCGACA
66 TAGTCTAGGACATGGCATCGACA
78671553 CCGATAGATG
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
92 1 0.01
93 54 0.72
94 11 0.15
95 9 0.12
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (95 bp):
GAGAGCCACTACAAGACATATCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGAC
TAGTCTAGGACATGGCATCGACATTGAGAC
Found at i:78671571 original size:49 final size:49
Alignment explanation
Indices: 78671422--78671691 Score: 202
Period size: 49 Copynumber: 5.6 Consensus size: 49
78671412 TGAGATATAC
* * * *
78671422 AAGCTAGTGTAAGA--TAGTCTAGGACAT-GCATCGACATTG--AGACGA
1 AAGCTAGTGTAAGACCT-GTCTGGGACATGGCATCGACCTCGATAGATGA
* * * * * * *
78671467 GAGCTACTATAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-A
1 AAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA
*
78671514 CAAGCTAGTGTAAGACTTGTCTGGGACATGGCATCGACAC-CGATAGATGA
1 -AAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGA
* * * * *
78671564 AAGCTAGTGTAAGACCTATCTGAGACACGGCATCGACCTTGATATATGA
1 AAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA
* * * * *
78671613 AAG-TCATTGTAAGACCTGTCTGGGACATGGCATCGGCTTTGAT-G-TGC
1 AAGCT-AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA
* *
78671660 TAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 AAGCTAGTGTAAGACC-TGTCTGGGACATGGC
78671692 GTCAACATCT
Statistics
Matches: 180, Mismatches: 33, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
45 11 0.06
46 19 0.11
47 16 0.09
48 43 0.24
49 89 0.49
50 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
AAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA
Found at i:78676385 original size:44 final size:42
Alignment explanation
Indices: 78676234--78676402 Score: 144
Period size: 43 Copynumber: 4.0 Consensus size: 42
78676224 TCGAAAACTC
* * ***
78676234 ATACAATGCCAACGTCCCAGATGA-GGTCTTACATGTAATCAA
1 ATACGATGCCAACGTCCCAGA-CATGGTCTTACACAAAATCAA
* *** * *
78676276 ATATCAATGCCAGTATCCCAGACAAGGTCTTACACAAAATCAT
1 ATA-CGATGCCAACGTCCCAGACATGGTCTTACACAAAATCAA
*
78676319 ATACGATGCCAATGTCCCAGACATGGTCTTACACATAAATCTCAA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACA-AAA--TCAA
** *
78676364 AT-CGATGCCAACGTCTTAGACATGGTCTTACACGAAATC
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACAAAATC
78676403 CTATGTCATG
Statistics
Matches: 105, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.02
42 32 0.30
43 38 0.36
44 28 0.27
45 5 0.05
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACATGGTCTTACACAAAATCAA
Found at i:78683228 original size:40 final size:40
Alignment explanation
Indices: 78683169--78683340 Score: 206
Period size: 40 Copynumber: 4.3 Consensus size: 40
78683159 TATTCGAATG
* *
78683169 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGACT
* * *
78683209 ATATCTGGGCTAAGACCCGAAGGCATCTGTGCTG-GCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * * *
78683249 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
**
78683289 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
78683329 ATATCC-GGCTAA
1 ATATCCGGGCTAA
78683341 ATCCCAAAGA
Statistics
Matches: 111, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 7 0.06
40 103 0.93
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:78683336 original size:80 final size:80
Alignment explanation
Indices: 78683169--78683320 Score: 234
Period size: 80 Copynumber: 1.9 Consensus size: 80
78683159 TATTCGAATG
* * * *
78683169 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTGCTATATCTGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCA
78683234 TCTGTGCTGGCGACT
66 TCTGTGCTGGCGACT
*
78683249 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTG-CCATATCCGGGCTAAGACCCGAAGGC
*
78683313 ATTTGTGC
65 ATCTGTGC
78683321 GAGTGGTTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
79 2 0.03
80 63 0.97
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCA
TCTGTGCTGGCGACT
Found at i:78688357 original size:10 final size:10
Alignment explanation
Indices: 78688344--78688393 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
78688334 TAGATTTAGG
78688344 ATTTAT-TTT
1 ATTTATCTTT
78688353 CATTTATCTTT
1 -ATTTATCTTT
*
78688364 AATTATCTTT
1 ATTTATCTTT
78688374 ATTTAT-TTGT
1 ATTTATCTT-T
78688384 ATTTATCTTT
1 ATTTATCTTT
78688394 TAGGATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:78691043 original size:48 final size:46
Alignment explanation
Indices: 78690970--78691243 Score: 220
Period size: 48 Copynumber: 5.7 Consensus size: 46
78690960 TAAAATGCCT
78690970 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTC-TCT-AATGTCG
* * * * *
78691018 ATGCCATGTCCTAGACATTGACTTACA-TTG-GCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCTC-TAATGT---CG
* *
78691066 ATACAATGTCCCAGACATGGTCTTACACTAG--CTCTCGTAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCTC-TAATGT---CG
* * * * *
78691114 ATGCCATGTCCCAAACATGATCTTACACTAGCACACATATCAACT-CCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTC-TCT-AA-TGTCG
*
78691162 ATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCTCATAATGTGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCTC-TAA--T-GTCG
*
78691210 ATGCCATGTCCTAGACATGGTCTTACACTAGCAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCAC
78691244 ACATATCACA
Statistics
Matches: 182, Mismatches: 28, Indels: 30
0.76 0.12 0.12
Matches are distributed among these distances:
45 10 0.05
46 8 0.04
47 3 0.02
48 150 0.82
49 3 0.02
50 4 0.02
51 3 0.02
52 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCTCTAATGTCG
Found at i:78691230 original size:144 final size:144
Alignment explanation
Indices: 78690970--78691241 Score: 402
Period size: 144 Copynumber: 1.9 Consensus size: 144
78690960 TAAAATGCCT
* * * * * * *
78690970 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAATGTCGATGCCATGTCCTAGACA
1 ATGCCATGTCCCAAACATGATCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACA
* *
78691035 TTGACTTACATTGGCTCTCATAATGTGGCCGATACAATGTCCCAGACATGGTCTTACACTAGCTC
66 TGGACTTACACTGGCTCTCATAATGTGGCCGATACAATGTCCCAGACATGGTCTTACACTAGCTC
78691100 TCGTAATGTGGCCG
131 TCGTAATGTGGCCG
78691114 ATGCCATGTCCCAAACATGATCTTACACTAGCACACATATCAACT-CCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAAACATGATCTTACACTAGCACACATATCAA-TGCCGATGCCATGTCCCAGAC
* * * * *
78691178 ATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCCATGTCCTAGACATGGTCTTACACTAGC
65 ATGGACTTACACTGGCTCTCATAATGTGGCCGATACAATGTCCCAGACATGGTCTTACACTAGC
78691242 ACACATATCA
Statistics
Matches: 113, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
144 112 0.99
145 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (144 bp):
ATGCCATGTCCCAAACATGATCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACA
TGGACTTACACTGGCTCTCATAATGTGGCCGATACAATGTCCCAGACATGGTCTTACACTAGCTC
TCGTAATGTGGCCG
Found at i:78691249 original size:96 final size:96
Alignment explanation
Indices: 78690965--78691251 Score: 316
Period size: 96 Copynumber: 3.0 Consensus size: 96
78690955 TAGGGTAAAA
* *
78690965 TGCCTATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAA--T-GTCGATGCCATGT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTC-TCT-AATGTGGTCGATGCCATGT
* * * * * * **
78691027 CCTAGACATTGACTTACATTGGCTCTCATA--ATG
62 CCTAGACATGGTCTTACACTAGCACACATATCAAC
* * * *
78691060 TGGCCGATACAATGTCCCAGACATGGTCTTACACTAGCTCTCGTAATGTGGCCGATGCCATGTCC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-TAATGTGGTCGATGCCATGTCC
* * *
78691125 CAAACATGATCTTACACTAGCACACATATCAAC
64 TAGACATGGTCTTACACTAGCACACATATCAAC
78691158 T-CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCCATGTCCT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-TAATGTGGTCGATGCCATGTCCT
78691222 AGACATGGTCTTACACTAGCACACATATCA
65 AGACATGGTCTTACACTAGCACACATATCA
78691252 CATGTTCGCA
Statistics
Matches: 160, Mismatches: 25, Indels: 13
0.81 0.13 0.07
Matches are distributed among these distances:
93 4 0.03
94 4 0.03
95 2 0.01
96 148 0.93
98 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTAATGTGGTCGATGCCATGTCCTA
GACATGGTCTTACACTAGCACACATATCAAC
Found at i:78694344 original size:7 final size:7
Alignment explanation
Indices: 78694331--78694366 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
78694321 TCACATTTCT
78694331 ACTCATC
1 ACTCATC
*
78694338 CCTCATC
1 ACTCATC
*
78694345 ATTCATC
1 ACTCATC
78694352 ACTCATC
1 ACTCATC
78694359 ACTCATC
1 ACTCATC
78694366 A
1 A
78694367 TCCTCTCCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.28, C:0.42, G:0.00, T:0.31
Consensus pattern (7 bp):
ACTCATC
Found at i:78696645 original size:27 final size:27
Alignment explanation
Indices: 78696605--78696763 Score: 201
Period size: 27 Copynumber: 5.9 Consensus size: 27
78696595 CTAATTAATT
* * *
78696605 AAATGACTGTTTTTCCCTATATATGGTA
1 AAATGACTATTTTGCCCT-TATGTGGTA
* *
78696633 AAATAACTATTTTGCCATTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* *
78696660 AAATGATTATTTTGTCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
*
78696687 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
*
78696714 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* * *
78696741 AGATGACTGTTTTGCCCCTATGT
1 AAATGACTATTTTGCCCTTATGT
78696764 ACAGTATATA
Statistics
Matches: 117, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
27 103 0.88
28 14 0.12
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATGTGGTA
Found at i:78697045 original size:23 final size:24
Alignment explanation
Indices: 78697019--78697063 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
78697009 TTATCCCTAC
*
78697019 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
78697042 ATGGAGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
78697064 GTAGGACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.22, C:0.02, G:0.51, T:0.24
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:78701389 original size:80 final size:79
Alignment explanation
Indices: 78701240--78701462 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 79
78701230 GTGAATGCTG
* * * ** * * * * *
78701240 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAGCCGGGCTAAG-TCCCGAAGGCATT
*
78701304 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* *
78701320 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTC
* **
78701385 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * *
78701400 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATT
78701463 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 81 0.68
81 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:78701443 original size:39 final size:40
Alignment explanation
Indices: 78701293--78701462 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
78701283 GGACTAAGAT
* * *
78701293 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
78701333 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
78701373 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
78701413 CCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
78701452 CCGAAGGCATT
1 CCGAAGGCATT
78701463 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 35 0.30
40 83 0.70
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:78701482 original size:79 final size:80
Alignment explanation
Indices: 78701315--78701497 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
78701305 GTGCGAGATA
* *
78701315 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
** **
78701380 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
78701395 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
*
78701459 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
78701474 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
78701498 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:78709401 original size:27 final size:27
Alignment explanation
Indices: 78709370--78709547 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
78709360 TAAATTGTAC
*
78709370 AGCACTAAGTGTACGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
78709397 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
78709423 ATGCACTAAGTGTGCGAATTGACCATG-
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
78709450 CGACACTAAGTGTGCGAGTTTGACTATGT
1 AG-CACTAAGTGTGCGA-TTTGACTATGT
* *
78709479 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
78709506 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
78709533 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78709548 GACTCAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 104 0.81
28 22 0.17
29 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:78709484 original size:82 final size:81
Alignment explanation
Indices: 78709372--78709526 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 81
78709362 AATTGTACAG
* *
78709372 CACTAAGTGTACGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 CACTAAGTGTACGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGT
78709436 GCGAATTGACCATGCGA
65 GCGAATTGACCATGCGA
* ** *
78709453 CACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGT
1 CACTAAGTGTACGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
*
78709518 GCGAGTTGA
65 GCGAATTGA
78709527 TTATATAGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 13 0.20
82 51 0.78
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (81 bp):
CACTAAGTGTACGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCGA
Found at i:78711046 original size:20 final size:20
Alignment explanation
Indices: 78711010--78711048 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
78711000 AAACGACTAT
*
78711010 TCGATCACTTTCGAATTTCC
1 TCGATCACTTTCCAATTTCC
78711030 TCGATCTAC-TTCCAATTTC
1 TCGATC-ACTTTCCAATTTC
78711049 TTTCGCTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.21, C:0.31, G:0.08, T:0.41
Consensus pattern (20 bp):
TCGATCACTTTCCAATTTCC
Found at i:78714115 original size:29 final size:29
Alignment explanation
Indices: 78714073--78714131 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
78714063 AACCATCTGT
*
78714073 AATAACCAGTGAGTCCCAGAAAACTTCAG
1 AATAACCAGCGAGTCCCAGAAAACTTCAG
78714102 AATAACCAGCGAGTCCCAGAAAACTTCAG
1 AATAACCAGCGAGTCCCAGAAAACTTCAG
78714131 A
1 A
78714132 CTTCTAATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.25, G:0.17, T:0.15
Consensus pattern (29 bp):
AATAACCAGCGAGTCCCAGAAAACTTCAG
Found at i:78723837 original size:46 final size:46
Alignment explanation
Indices: 78723784--78723896 Score: 129
Period size: 46 Copynumber: 2.5 Consensus size: 46
78723774 TGTGTGTCAA
** *
78723784 TGTAAGACATGTCTGGGACATGCAGAGACCA-CATTATTAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCAGAGA-CATCAAGATGAGAGCTAG
* * * ** *
78723830 TGTAAGACATGTCTAGAACAGGCATCGACATTAAGATGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCAGAGACATCAAGATGAGAGCTAG
78723876 TGTAAGACATGTCTGGGACAT
1 TGTAAGACATGTCTGGGACAT
78723897 ACATCAGCCT
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
45 2 0.04
46 52 0.96
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.24
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCAGAGACATCAAGATGAGAGCTAG
Found at i:78724021 original size:27 final size:27
Alignment explanation
Indices: 78723970--78724021 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
78723960 TGTGTCAGTG
***
78723970 TAAGACCTGTCTGGGACATGGCATCAA
1 TAAGACCTGTCTGGGACACAACATCAA
78723997 TAAGACCTGTCTGGGACACAACATC
1 TAAGACCTGTCTGGGACACAACATC
78724022 GACCTCGATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (27 bp):
TAAGACCTGTCTGGGACACAACATCAA
Found at i:78727810 original size:42 final size:42
Alignment explanation
Indices: 78727751--78727834 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
78727741 TCTTCTACGA
*
78727751 TCTCTGACTCCTGTGCTAGTTGGACGACACTATAAGACAAAG
1 TCTCTGACTCCTGTGCTAGCTGGACGACACTATAAGACAAAG
78727793 TCTCTGACTCCTGTGCTAGCTGGACGACACTATAAGACAAAG
1 TCTCTGACTCCTGTGCTAGCTGGACGACACTATAAGACAAAG
78727835 GAGAGAAAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (42 bp):
TCTCTGACTCCTGTGCTAGCTGGACGACACTATAAGACAAAG
Found at i:78736404 original size:66 final size:67
Alignment explanation
Indices: 78736270--78736447 Score: 172
Period size: 66 Copynumber: 2.6 Consensus size: 67
78736260 CACTTAGTAC
* * *
78736270 CACTCATGCGACCTAGC--CGATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGG
1 CACTCATGCGACCTAGCTACGATTTATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCG
78736333 AAT
65 AAT
78736336 CACTCATGCGACCTAGCTAC-ATTTATCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-
1 CACTCATGCGACCTAGCTACGATTTATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACT
*
78736397 CGTAT
63 CGAAT
* * *
78736402 CACACATGTGACCTAGCTACTATATAGTATCTCGTAGC-CTTCTTGT
1 CACTCATGCGACCTAGCTACGAT-T--TATCTCGTAGCTC-TCTTGT
78736448 ACACATAATG
Statistics
Matches: 96, Mismatches: 6, Indels: 18
0.80 0.05 0.15
Matches are distributed among these distances:
66 38 0.40
67 11 0.11
68 16 0.17
69 26 0.27
70 5 0.05
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (67 bp):
CACTCATGCGACCTAGCTACGATTTATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGA
AT
Found at i:78738469 original size:7 final size:7
Alignment explanation
Indices: 78738453--78738490 Score: 69
Period size: 7 Copynumber: 5.6 Consensus size: 7
78738443 GATGACATCT
78738453 TTTTCT-
1 TTTTCTA
78738459 TTTTCTA
1 TTTTCTA
78738466 TTTTCTA
1 TTTTCTA
78738473 TTTTCTA
1 TTTTCTA
78738480 TTTTCTA
1 TTTTCTA
78738487 TTTT
1 TTTT
78738491 AGTCAAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 6 0.19
7 25 0.81
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTCTA
Found at i:78743613 original size:41 final size:41
Alignment explanation
Indices: 78743560--78743790 Score: 241
Period size: 41 Copynumber: 5.7 Consensus size: 41
78743550 CGCTGACTCA
* * * *
78743560 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCC
1 AAAAGCCCTTCGAGACCAAGCTCAGATTATGACACTGGCTC
* * * * * * *
78743601 GAAGGCCCTTCGAAACTAGGTTCAG-TTATGACACTGGCTT
1 AAAAGCCCTTCGAGACCAAGCTCAGATTATGACACTGGCTC
* * * *
78743641 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCC
1 AAAAGCCCTTCGAGACCAAGCTCAGATTATGACACTGGCTC
* * * * * * *
78743682 GAAGGCCCTTCGAAACTAGGTTCAG-TTATGACACTGGCTT
1 AAAAGCCCTTCGAGACCAAGCTCAGATTATGACACTGGCTC
*
78743722 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCAGATTATGACACTGGCTC
78743763 AAAAGCCCTTCGAGACCAAGCTCAGATT
1 AAAAGCCCTTCGAGACCAAGCTCAGATT
78743791 TAAAGCCCGA
Statistics
Matches: 146, Mismatches: 42, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
40 58 0.40
41 88 0.60
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCAGATTATGACACTGGCTC
Found at i:78743775 original size:81 final size:81
Alignment explanation
Indices: 78743560--78743755 Score: 392
Period size: 81 Copynumber: 2.4 Consensus size: 81
78743550 CGCTGACTCA
78743560 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78743625 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78743641 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78743706 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78743722 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACA
78743756 CTGGCTCAAA
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 115 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (81 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
GTTATGACACTGGCTT
Found at i:78752608 original size:81 final size:81
Alignment explanation
Indices: 78751745--78752588 Score: 1679
Period size: 81 Copynumber: 10.4 Consensus size: 81
78751735 CGCTGACTCA
78751745 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78751810 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78751826 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78751891 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78751907 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78751972 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78751988 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78752053 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78752069 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78752134 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78752150 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78752215 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78752231 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78752296 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78752312 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78752377 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78752393 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78752458 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
78752474 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
78752539 GTTATGACACTGGCTT
66 GTTATGACACTGGCTT
*
78752555 AAAAGCCCTTTGAGACCAAGCTCGGATTATGACA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACA
78752589 CTGGCTCAAA
Statistics
Matches: 762, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 762 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (81 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTCGCCCGAAGGCCCTTCGAAACTAGGTTCA
GTTATGACACTGGCTT
Found at i:78754722 original size:34 final size:34
Alignment explanation
Indices: 78754674--78754740 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
78754664 CTCTCGTTTA
* *
78754674 CTCGGCATTTGCCCAAGTGACGTCTTCCACATTC
1 CTCGGCATTCGCCCAAATGACGTCTTCCACATTC
78754708 CTCGGCATTCGCCCAAATGACGTCTTCCACATT
1 CTCGGCATTCGCCCAAATGACGTCTTCCACATT
78754741 GCGAACACTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.19, C:0.36, G:0.16, T:0.28
Consensus pattern (34 bp):
CTCGGCATTCGCCCAAATGACGTCTTCCACATTC
Found at i:78762090 original size:47 final size:47
Alignment explanation
Indices: 78762023--78762180 Score: 151
Period size: 46 Copynumber: 3.3 Consensus size: 47
78762013 AGAGATATAC
*
78762023 GGGACATGCATCGGTC-TTGAGATATACAAGCTAGTGTAAGATAGTCT
1 GGGACATGCATC-GACATTGAGATATACAAGCTAGTGTAAGATAGTCT
* ** * * * *
78762070 AGGACATGCATCGACATTGAGA-CGA-GAGCTACTATAAGACATGTCT
1 GGGACATGCATCGACATTGAGATATACAAGCTAGTGTAAGATA-GTCT
* * * *
78762116 GGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACTTGTCT
1 GGGACATGCATCGACATTGAGATATACAAGCTAGTGTAAGA-TAGTCT
78762164 GGGACATGGCATCGACA
1 GGGACAT-GCATCGACA
78762181 CCGATAGATG
Statistics
Matches: 84, Mismatches: 21, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
45 12 0.14
46 25 0.30
47 18 0.21
48 22 0.26
49 7 0.08
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (47 bp):
GGGACATGCATCGACATTGAGATATACAAGCTAGTGTAAGATAGTCT
Found at i:78762097 original size:93 final size:95
Alignment explanation
Indices: 78762000--78762180 Score: 242
Period size: 93 Copynumber: 1.9 Consensus size: 95
78761990 GCCACATTAT
* * * * *
78762000 GAGAGCCAGTGCAAGAGATATAC-GGGACATGCATCGGTCTTGAGATATACAAGCTAGTGTAAGA
1 GAGAGCCACTACAAGACATAT-CTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGA
78762064 -TAGTCTAGGACAT-GCATCGACATTGAGAC
65 CTAGTCTAGGACATGGCATCGACATTGAGAC
* * *
78762093 GAGAGCTACTATAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGAC
1 GAGAGCCACTACAAGACATATCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGAC
* *
78762158 TTGTCTGGGACATGGCATCGACA
66 TAGTCTAGGACATGGCATCGACA
78762181 CCGATAGATG
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
92 1 0.01
93 54 0.72
94 11 0.15
95 9 0.12
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (95 bp):
GAGAGCCACTACAAGACATATCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGAC
TAGTCTAGGACATGGCATCGACATTGAGAC
Found at i:78762199 original size:49 final size:49
Alignment explanation
Indices: 78762050--78762319 Score: 202
Period size: 49 Copynumber: 5.6 Consensus size: 49
78762040 TGAGATATAC
* * * *
78762050 AAGCTAGTGTAAGA--TAGTCTAGGACAT-GCATCGACATTG--AGACGA
1 AAGCTAGTGTAAGACCT-GTCTGGGACATGGCATCGACCTCGATAGATGA
* * * * * * *
78762095 GAGCTACTATAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-A
1 AAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA
*
78762142 CAAGCTAGTGTAAGACTTGTCTGGGACATGGCATCGACAC-CGATAGATGA
1 -AAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGA
* * * * *
78762192 AAGCTAGTGTAAGACCTATCTGAGACACGGCATCGACCTTGATATATGA
1 AAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA
* * * * *
78762241 AAG-TCATTGTAAGACCTGTCTGGGACATGGCATCGGCTTTGAT-G-TGC
1 AAGCT-AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA
* *
78762288 TAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 AAGCTAGTGTAAGACC-TGTCTGGGACATGGC
78762320 GTCAACATCT
Statistics
Matches: 180, Mismatches: 33, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
45 11 0.06
46 19 0.11
47 16 0.09
48 43 0.24
49 89 0.49
50 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
AAGCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA
Found at i:78767013 original size:44 final size:42
Alignment explanation
Indices: 78766862--78767030 Score: 144
Period size: 43 Copynumber: 4.0 Consensus size: 42
78766852 TCGAAAACTC
* * ***
78766862 ATACAATGCCAACGTCCCAGATGA-GGTCTTACATGTAATCAA
1 ATACGATGCCAACGTCCCAGA-CATGGTCTTACACAAAATCAA
* *** * *
78766904 ATATCAATGCCAGTATCCCAGACAAGGTCTTACACAAAATCAT
1 ATA-CGATGCCAACGTCCCAGACATGGTCTTACACAAAATCAA
*
78766947 ATACGATGCCAATGTCCCAGACATGGTCTTACACATAAATCTCAA
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACA-AAA--TCAA
** *
78766992 AT-CGATGCCAACGTCTTAGACATGGTCTTACACGAAATC
1 ATACGATGCCAACGTCCCAGACATGGTCTTACACAAAATC
78767031 CTATGTCATG
Statistics
Matches: 105, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.02
42 32 0.30
43 38 0.36
44 28 0.27
45 5 0.05
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACATGGTCTTACACAAAATCAA
Found at i:78773856 original size:40 final size:40
Alignment explanation
Indices: 78773797--78773968 Score: 206
Period size: 40 Copynumber: 4.3 Consensus size: 40
78773787 TATTCGAATG
* *
78773797 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGACT
* * *
78773837 ATATCTGGGCTAAGACCCGAAGGCATCTGTGCTG-GCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * * *
78773877 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
**
78773917 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
78773957 ATATCC-GGCTAA
1 ATATCCGGGCTAA
78773969 ATCCCAAAGA
Statistics
Matches: 111, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 7 0.06
40 103 0.93
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:78773964 original size:80 final size:80
Alignment explanation
Indices: 78773797--78773948 Score: 234
Period size: 80 Copynumber: 1.9 Consensus size: 80
78773787 TATTCGAATG
* * * *
78773797 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTTGCTATATCTGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCA
78773862 TCTGTGCTGGCGACT
66 TCTGTGCTGGCGACT
*
78773877 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTG-CCATATCCGGGCTAAGACCCGAAGGC
*
78773941 ATTTGTGC
65 ATCTGTGC
78773949 GAGTGGTTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
79 2 0.03
80 63 0.97
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCA
TCTGTGCTGGCGACT
Found at i:78778985 original size:10 final size:10
Alignment explanation
Indices: 78778972--78779021 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
78778962 TAGATTTAGG
78778972 ATTTAT-TTT
1 ATTTATCTTT
78778981 CATTTATCTTT
1 -ATTTATCTTT
*
78778992 AATTATCTTT
1 ATTTATCTTT
78779002 ATTTAT-TTGT
1 ATTTATCTT-T
78779012 ATTTATCTTT
1 ATTTATCTTT
78779022 TAGGATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:78781671 original size:48 final size:46
Alignment explanation
Indices: 78781598--78781871 Score: 220
Period size: 48 Copynumber: 5.7 Consensus size: 46
78781588 TAAAATGCCT
78781598 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTC-TCT-AATGTCG
* * * * *
78781646 ATGCCATGTCCTAGACATTGACTTACA-TTG-GCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCTC-TAATGT---CG
* *
78781694 ATACAATGTCCCAGACATGGTCTTACACTAG--CTCTCGTAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCTC-TAATGT---CG
* * * * *
78781742 ATGCCATGTCCCAAACATGATCTTACACTAGCACACATATCAACT-CCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTC-TCT-AA-TGTCG
*
78781790 ATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCTCATAATGTGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCTC-TAA--T-GTCG
*
78781838 ATGCCATGTCCTAGACATGGTCTTACACTAGCAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCAC
78781872 ACATATCACA
Statistics
Matches: 182, Mismatches: 28, Indels: 30
0.76 0.12 0.12
Matches are distributed among these distances:
45 10 0.05
46 8 0.04
47 3 0.02
48 150 0.82
49 3 0.02
50 4 0.02
51 3 0.02
52 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCTCTAATGTCG
Found at i:78781858 original size:144 final size:144
Alignment explanation
Indices: 78781598--78781869 Score: 402
Period size: 144 Copynumber: 1.9 Consensus size: 144
78781588 TAAAATGCCT
* * * * * * *
78781598 ATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAATGTCGATGCCATGTCCTAGACA
1 ATGCCATGTCCCAAACATGATCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACA
* *
78781663 TTGACTTACATTGGCTCTCATAATGTGGCCGATACAATGTCCCAGACATGGTCTTACACTAGCTC
66 TGGACTTACACTGGCTCTCATAATGTGGCCGATACAATGTCCCAGACATGGTCTTACACTAGCTC
78781728 TCGTAATGTGGCCG
131 TCGTAATGTGGCCG
78781742 ATGCCATGTCCCAAACATGATCTTACACTAGCACACATATCAACT-CCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAAACATGATCTTACACTAGCACACATATCAA-TGCCGATGCCATGTCCCAGAC
* * * * *
78781806 ATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCCATGTCCTAGACATGGTCTTACACTAGC
65 ATGGACTTACACTGGCTCTCATAATGTGGCCGATACAATGTCCCAGACATGGTCTTACACTAGC
78781870 ACACATATCA
Statistics
Matches: 113, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
144 112 0.99
145 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (144 bp):
ATGCCATGTCCCAAACATGATCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGACA
TGGACTTACACTGGCTCTCATAATGTGGCCGATACAATGTCCCAGACATGGTCTTACACTAGCTC
TCGTAATGTGGCCG
Found at i:78781877 original size:96 final size:96
Alignment explanation
Indices: 78781593--78781879 Score: 316
Period size: 96 Copynumber: 3.0 Consensus size: 96
78781583 TAGGGTAAAA
* *
78781593 TGCCTATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGTCTCAA--T-GTCGATGCCATGT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTC-TCT-AATGTGGTCGATGCCATGT
* * * * * * **
78781655 CCTAGACATTGACTTACATTGGCTCTCATA--ATG
62 CCTAGACATGGTCTTACACTAGCACACATATCAAC
* * * *
78781688 TGGCCGATACAATGTCCCAGACATGGTCTTACACTAGCTCTCGTAATGTGGCCGATGCCATGTCC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-TAATGTGGTCGATGCCATGTCC
* * *
78781753 CAAACATGATCTTACACTAGCACACATATCAAC
64 TAGACATGGTCTTACACTAGCACACATATCAAC
78781786 T-CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCCATGTCCT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-TAATGTGGTCGATGCCATGTCCT
78781850 AGACATGGTCTTACACTAGCACACATATCA
65 AGACATGGTCTTACACTAGCACACATATCA
78781880 CATGTTCGCA
Statistics
Matches: 160, Mismatches: 25, Indels: 13
0.81 0.13 0.07
Matches are distributed among these distances:
93 4 0.03
94 4 0.03
95 2 0.01
96 148 0.93
98 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCTAATGTGGTCGATGCCATGTCCTA
GACATGGTCTTACACTAGCACACATATCAAC
Found at i:78784972 original size:7 final size:7
Alignment explanation
Indices: 78784959--78784994 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
78784949 TCACATTTCT
78784959 ACTCATC
1 ACTCATC
*
78784966 CCTCATC
1 ACTCATC
*
78784973 ATTCATC
1 ACTCATC
78784980 ACTCATC
1 ACTCATC
78784987 ACTCATC
1 ACTCATC
78784994 A
1 A
78784995 TCCTCTCCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.28, C:0.42, G:0.00, T:0.31
Consensus pattern (7 bp):
ACTCATC
Found at i:78787273 original size:27 final size:27
Alignment explanation
Indices: 78787233--78787391 Score: 201
Period size: 27 Copynumber: 5.9 Consensus size: 27
78787223 CTAATTAATT
* * *
78787233 AAATGACTGTTTTTCCCTATATATGGTA
1 AAATGACTATTTTGCCCT-TATGTGGTA
* *
78787261 AAATAACTATTTTGCCATTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* *
78787288 AAATGATTATTTTGTCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
*
78787315 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
*
78787342 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* * *
78787369 AGATGACTGTTTTGCCCCTATGT
1 AAATGACTATTTTGCCCTTATGT
78787392 ACAGTATATA
Statistics
Matches: 117, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
27 103 0.88
28 14 0.12
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATGTGGTA
Found at i:78787673 original size:23 final size:24
Alignment explanation
Indices: 78787647--78787691 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
78787637 TTATCCCTAC
*
78787647 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
78787670 ATGGAGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
78787692 GTAGGACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.22, C:0.02, G:0.51, T:0.24
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:78792018 original size:80 final size:79
Alignment explanation
Indices: 78791869--78792091 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 79
78791859 GTGAATGCTG
* * * ** * * * * *
78791869 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAGCCGGGCTAAG-TCCCGAAGGCATT
*
78791933 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* *
78791949 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTC
* **
78792014 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * *
78792029 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATT
78792092 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 81 0.68
81 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:78792072 original size:39 final size:40
Alignment explanation
Indices: 78791922--78792091 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
78791912 GGACTAAGAT
* * *
78791922 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
78791962 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
78792002 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
78792042 CCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
78792081 CCGAAGGCATT
1 CCGAAGGCATT
78792092 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 35 0.30
40 83 0.70
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:78792111 original size:79 final size:80
Alignment explanation
Indices: 78791944--78792126 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
78791934 GTGCGAGATA
* *
78791944 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
** **
78792009 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
78792024 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
*
78792088 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
78792103 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
78792127 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:78800451 original size:61 final size:61
Alignment explanation
Indices: 78800356--78800475 Score: 240
Period size: 61 Copynumber: 2.0 Consensus size: 61
78800346 GGGTTGCCAG
78800356 CTGTAATATCCTCAATGTTGGCCCAGAAATATGTAAGAAAAGGGTGCGAAGCATACCTTTT
1 CTGTAATATCCTCAATGTTGGCCCAGAAATATGTAAGAAAAGGGTGCGAAGCATACCTTTT
78800417 CTGTAATATCCTCAATGTTGGCCCAGAAATATGTAAGAAAAGGGTGCGAAGCATACCTT
1 CTGTAATATCCTCAATGTTGGCCCAGAAATATGTAAGAAAAGGGTGCGAAGCATACCTT
78800476 GCGTATGTAC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (61 bp):
CTGTAATATCCTCAATGTTGGCCCAGAAATATGTAAGAAAAGGGTGCGAAGCATACCTTTT
Found at i:78810684 original size:21 final size:21
Alignment explanation
Indices: 78810660--78810726 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
78810650 TGGTCAGAGA
78810660 GGATCTAGAGATGCTACGACC
1 GGATCTAGAGATGCTACGACC
* * * *
78810681 GGAT-TAGCGGTGGTCAAAGA--
1 GGATCTAGAGAT-G-CTACGACC
78810701 GGATCTAGAGATGCTACGACC
1 GGATCTAGAGATGCTACGACC
*
78810722 AGATC
1 GGATC
78810727 CGAGGCTCGT
Statistics
Matches: 32, Mismatches: 9, Indels: 10
0.63 0.18 0.20
Matches are distributed among these distances:
19 4 0.12
20 10 0.31
21 14 0.44
22 4 0.12
ACGTcount: A:0.30, C:0.19, G:0.31, T:0.19
Consensus pattern (21 bp):
GGATCTAGAGATGCTACGACC
Found at i:78821682 original size:48 final size:48
Alignment explanation
Indices: 78821622--78821767 Score: 154
Period size: 48 Copynumber: 3.0 Consensus size: 48
78821612 GTCATTAGGG
*
78821622 GATA-CATTGATTTGGCTTCAGCCCATGATATTGGCACTTCGGGTGCGA
1 GATATCATTGATTTGGCTTCAG-CCATGATATTGGCACTTCGGGTGCAA
* * * *
78821670 GCT-TCATTGATTTGGCTTCGAGCCATGATATTAGCACTTTGGGTGTAA
1 GATATCATTGATTTGGCTTC-AGCCATGATATTGGCACTTCGGGTGCAA
* * * * *
78821718 GATAT-ATTGAGTTGGCTTCGGGACATGATATTGGCACTTAGTGTGCAA
1 GATATCATTGATTTGGCTTC-AGCCATGATATTGGCACTTCGGGTGCAA
78821766 GA
1 GA
78821768 CTCATGAGTA
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
48 79 0.96
49 3 0.04
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (48 bp):
GATATCATTGATTTGGCTTCAGCCATGATATTGGCACTTCGGGTGCAA
Found at i:78826776 original size:80 final size:79
Alignment explanation
Indices: 78826627--78826849 Score: 223
Period size: 80 Copynumber: 2.8 Consensus size: 79
78826617 GTGAATGCTG
* * * ** * * * * *
78826627 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAGCCGGGCTAAG-TCCCGAAGGCATT
*
78826691 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* *
78826707 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTC
* **
78826772 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * * *
78826787 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAATCGGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATT
78826850 TGAACGAGGA
Statistics
Matches: 119, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
79 34 0.29
80 81 0.68
81 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:78826837 original size:39 final size:40
Alignment explanation
Indices: 78826680--78826849 Score: 225
Period size: 40 Copynumber: 4.3 Consensus size: 40
78826670 GGACTAAGAT
* * *
78826680 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
78826720 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
78826760 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
78826800 CCGAAGGCATT-GTGTGAGTTACTAAATCGGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
78826839 CCGAAGGCATT
1 CCGAAGGCATT
78826850 TGAACGAGGA
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 34 0.29
40 83 0.71
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:78835355 original size:13 final size:13
Alignment explanation
Indices: 78835339--78835364 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
78835329 AATTTGGGTT
78835339 TTAAATTAATTAA
1 TTAAATTAATTAA
78835352 TTAAATTAATTAA
1 TTAAATTAATTAA
78835365 ATTTTATTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TTAAATTAATTAA
Found at i:78835765 original size:7 final size:7
Alignment explanation
Indices: 78835753--78835789 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
78835743 CACATTTCTA
78835753 CTCATCC
1 CTCATCC
78835760 CTCATCC
1 CTCATCC
78835767 CTCATCC
1 CTCATCC
78835774 CTCATCC
1 CTCATCC
78835781 CTCATCC
1 CTCATCC
78835788 CT
1 CT
78835790 TATCACTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.14, C:0.57, G:0.00, T:0.30
Consensus pattern (7 bp):
CTCATCC
Found at i:78838101 original size:39 final size:39
Alignment explanation
Indices: 78838054--78838181 Score: 193
Period size: 39 Copynumber: 3.3 Consensus size: 39
78838044 TATATGAGAT
78838054 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
78838093 TTGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
* * * **
78838132 TGGAAATATATCCGAACTTGAGGTCTGCAGGCTACGTGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
*
78838171 TGGAAAAATAT
1 TGGAAATATAT
78838182 TCGGTTAAAG
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.25
Consensus pattern (39 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTATATGC
Found at i:78844187 original size:27 final size:27
Alignment explanation
Indices: 78844157--78844562 Score: 442
Period size: 27 Copynumber: 15.0 Consensus size: 27
78844147 AAAGTACTCC
78844157 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
78844184 CGATTTTTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
78844211 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
78844238 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
78844265 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
78844292 CAATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
78844319 TGATTTACAGAATTACCGTCTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
78844346 C-AGTTTACAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* * *
78844373 CGATTTATAGAATTATCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
78844400 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
78844427 CAATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
78844454 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
78844481 CGATTTATAGAATTACTAG-TTTACCCT
1 CGATTTACAGAATTAC-CGTTTTACCCT
* * * *
78844508 TGGTTTACAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
78844535 CGATTTACAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
78844562 C
1 C
78844563 AATTGTGAAA
Statistics
Matches: 319, Mismatches: 52, Indels: 16
0.82 0.13 0.04
Matches are distributed among these distances:
26 4 0.01
27 311 0.97
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:78844315 original size:108 final size:108
Alignment explanation
Indices: 78844157--78844563 Score: 507
Period size: 108 Copynumber: 3.8 Consensus size: 108
78844147 AAAGTACTCC
* ** *
78844157 CGATTTACAGAATTACCGTTTTACCCTCGATTTTTAAAATTACTGTTTTACCCTCGATTTATAGA
1 CGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACTGTTTTACCCTCGATTTACAGA
*
78844222 ATTACCATTTTACCCTCAGTTTACAGAATTACTATTTTACCCT
66 ATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCT
** *
78844265 CGATTTACAGAATTACCGTTTTACCCTCAATTTGTAAAATTACTGTTTTACCCTTGATTTACAGA
1 CGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACTGTTTTACCCTCGATTTACAGA
* *
78844330 ATTACCGTCTTACCCTCAGTTTACAGAATTACCATTTTACCCT
66 ATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCT
* * * * * *
78844373 CGATTTATAGAATTATCATTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCAATTTACAGA
1 CGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACTGTTTTACCCTCGATTTACAGA
** * *
78844438 ATTACTGTTTTACCCTCGATTTGTA-A-AATTACCGTTTTACCCT
66 ATTACCATTTTACCCTC-AGTT-TACAGAATTACCATTTTACCCT
* * ***
78844481 CGATTTATAGAATTACTAG-TTTACCCTTGGTTTACAAAATTA-TCGTTTTACCCTCGATTTACA
1 CGATTTACAGAATTAC-CGTTTTACCCTCAATTTACAAAATTACT-GTTTTACCCTCGATTTACA
* *
78844544 AAATTACTATTTTACCCTCA
64 GAATTACCATTTTACCCTCA
78844564 ATTGTGAAAT
Statistics
Matches: 266, Mismatches: 29, Indels: 9
0.88 0.10 0.03
Matches are distributed among these distances:
107 2 0.01
108 258 0.97
109 4 0.02
110 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (108 bp):
CGATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACTGTTTTACCCTCGATTTACAGA
ATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCT
Found at i:78844600 original size:27 final size:27
Alignment explanation
Indices: 78844570--78844766 Score: 207
Period size: 27 Copynumber: 7.3 Consensus size: 27
78844560 CTCAATTGTG
**
78844570 AAATTACTAAAATACCCCTGTAGGGTA
1 AAATTACCGAAATACCCCTGTAGGGTA
*
78844597 AAATTACCGAAATACCCCTATAGGGTA
1 AAATTACCGAAATACCCCTGTAGGGTA
* ** * *
78844624 GAATTACTAAAATACCCTTATAGGGTA
1 AAATTACCGAAATACCCCTGTAGGGTA
* *
78844651 GAATTACCGAAATACCCCCGTAGGGTA
1 AAATTACCGAAATACCCCTGTAGGGTA
* * *
78844678 GAATTATCGAAATACCCTTGTAGGGTA
1 AAATTACCGAAATACCCCTGTAGGGTA
*
78844705 GAAA-TACAGAAATACCCCTGTAGGGTA
1 -AAATTACCGAAATACCCCTGTAGGGTA
* * ** *
78844732 GAATTACCGAGATACCTTTGTGGGGTA
1 AAATTACCGAAATACCCCTGTAGGGTA
78844759 AAATTACC
1 AAATTACC
78844767 ATTTTGCCCC
Statistics
Matches: 142, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 138 0.97
28 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
AAATTACCGAAATACCCCTGTAGGGTA
Found at i:78844639 original size:54 final size:54
Alignment explanation
Indices: 78844571--78844766 Score: 252
Period size: 54 Copynumber: 3.6 Consensus size: 54
78844561 TCAATTGTGA
* *
78844571 AATTACTAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTATAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAG
* * *
78844625 AATTACTAAAATACCCTTATAGGGTAGAATTACCGAAATACCCCCGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAG
* *
78844679 AATTA-TCGAAATACCCTTGTAGGGTAGAAA-TACAGAAATACCCCTGTAGGGTAG
1 AATTACT-AAAATACCCTTGTAGGGTA-AAATTACCGAAATACCCCTGTAGGGTAG
** * * *
78844733 AATTACCGAGATACCTTTGTGGGGTAAAATTACC
1 AATTACTAAAATACCCTTGTAGGGTAAAATTACC
78844767 ATTTTGCCCC
Statistics
Matches: 123, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
53 4 0.03
54 117 0.95
55 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (54 bp):
AATTACTAAAATACCCTTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAG
Found at i:78844683 original size:81 final size:81
Alignment explanation
Indices: 78844579--78844766 Score: 243
Period size: 81 Copynumber: 2.3 Consensus size: 81
78844569 GAAATTACTA
* * *
78844579 AAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTATAGGGTAGAATTACTA-AAATACCCTT
1 AAATACCCCCGTAGGGTAAAATTACCGAAATACCCCTATAGGGTAGAAATAC-AGAAATACCCCT
78844643 ATAGGGTAGAATTACCG
65 ATAGGGTAGAATTACCG
* * * * *
78844660 AAATACCCCCGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACAGAAATACCCCTG
1 AAATACCCCCGTAGGGTAAAATTACCGAAATACCCCTATAGGGTAGAAATACAGAAATACCCCTA
78844725 TAGGGTAGAATTACCG
66 TAGGGTAGAATTACCG
* *** *
78844741 AGATACCTTTGTGGGGTAAAATTACC
1 AAATACCCCCGTAGGGTAAAATTACC
78844767 ATTTTGCCCC
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 1 0.01
81 90 0.99
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (81 bp):
AAATACCCCCGTAGGGTAAAATTACCGAAATACCCCTATAGGGTAGAAATACAGAAATACCCCTA
TAGGGTAGAATTACCG
Found at i:78845003 original size:27 final size:26
Alignment explanation
Indices: 78844965--78845044 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
78844955 CGGAGGAAGC
*
78844965 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
78844992 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
78845018 CTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
78845045 TTTGACCGAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 8 0.17
27 40 0.83
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:78845167 original size:22 final size:22
Alignment explanation
Indices: 78845135--78845193 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
78845125 CCCGTTATTA
*
78845135 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
78845157 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
78845179 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
78845194 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:78845558 original size:6 final size:6
Alignment explanation
Indices: 78845549--78845650 Score: 95
Period size: 6 Copynumber: 16.8 Consensus size: 6
78845539 TTGCATTCAC
* * *
78845549 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCGG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
78845598 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
78845646 ATTCT
1 ATTCT
78845651 CATTTTGGTT
Statistics
Matches: 79, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
5 6 0.08
6 66 0.84
7 5 0.06
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:78845613 original size:30 final size:30
Alignment explanation
Indices: 78845549--78845650 Score: 152
Period size: 30 Copynumber: 3.4 Consensus size: 30
78845539 TTGCATTCAC
* *
78845549 ATTCTGATTCTGATTCTGTCACCTAATTCGG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
78845580 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
78845610 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
78845640 ATTCTGATTCT
1 ATTCTGATTCT
78845651 CATTTTGGTT
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
29 1 0.02
30 44 0.67
31 21 0.32
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:78847857 original size:23 final size:23
Alignment explanation
Indices: 78847830--78848050 Score: 230
Period size: 23 Copynumber: 9.6 Consensus size: 23
78847820 CAAAGTGCCA
* *
78847830 CACTGTAATATAGCCGAAGCTAT
1 CACTGTAATGTAGCCGAAGCTAC
* *
78847853 AACTGTAACGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
78847876 CACTGTATTGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
*
78847899 CACTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
78847922 CACTG-AGATGTAGCCGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
** *
78847945 CACTGTCTTGTAGACGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
78847968 CACTGAAATGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* * * * * *
78847991 CATTTTATTGTAACCTAAGCAAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
78848014 CATTGTATTGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
78848037 CACTG-AGATGTAGC
1 CACTGTA-ATGTAGC
78848051 TGATAGATTC
Statistics
Matches: 164, Mismatches: 31, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
22 2 0.01
23 162 0.99
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (23 bp):
CACTGTAATGTAGCCGAAGCTAC
Found at i:78851640 original size:46 final size:46
Alignment explanation
Indices: 78851590--78851718 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
78851580 TGGTTGAGCA
*
78851590 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
78851636 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
78851682 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78851719 GCCGGTTACA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:78856410 original size:58 final size:58
Alignment explanation
Indices: 78856320--78856435 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
78856310 CAGGGAATAA
78856320 GGCACAAAGTGCCACACTGTAATATAACCGAAGATATCACTGTAACGTAGCCGAAGCT
1 GGCACAAAGTGCCACACTGTAATATAACCGAAGATATCACTGTAACGTAGCCGAAGCT
*
78856378 GGCACAAAGTGCCACACTGTAATATAACCGAAGCTATCACTGTAACGTAGCCGAAGCT
1 GGCACAAAGTGCCACACTGTAATATAACCGAAGATATCACTGTAACGTAGCCGAAGCT
78856436 ACCACTGTAT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.19
Consensus pattern (58 bp):
GGCACAAAGTGCCACACTGTAATATAACCGAAGATATCACTGTAACGTAGCCGAAGCT
Found at i:78856422 original size:23 final size:23
Alignment explanation
Indices: 78856392--78856580 Score: 206
Period size: 23 Copynumber: 8.2 Consensus size: 23
78856382 CAAAGTGCCA
* * *
78856392 CACTGTAATATAACCGAAGCTAT
1 CACTGTAATGTAGCCGAAGCTAC
*
78856415 CACTGTAACGTAGCCGAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
78856438 CACTGTATTGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
* *
78856461 CACTGTATTGTAGCCAAAGCTAC
1 CACTGTAATGTAGCCGAAGCTAC
78856484 CACTG-AGATGTAGCCGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
*
78856507 CACTG-AGATGTAGCTGAAGCTAC
1 CACTGTA-ATGTAGCCGAAGCTAC
* *
78856530 CGCTG-AATTGTGGCCGAAGCTAC
1 CACTGTAA-TGTAGCCGAAGCTAC
*
78856553 CACTGT-ATAGTAGCTGAAGCTAC
1 CACTGTAAT-GTAGCCGAAGCTAC
78856576 CACTG
1 CACTG
78856581 AGAGGTAGCC
Statistics
Matches: 146, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
22 3 0.02
23 143 0.98
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (23 bp):
CACTGTAATGTAGCCGAAGCTAC
Found at i:78859886 original size:18 final size:18
Alignment explanation
Indices: 78859863--78859898 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
78859853 ATATGAATGG
78859863 GTTAATTACCATGTAAGT
1 GTTAATTACCATGTAAGT
78859881 GTTAATTACCATGTAAGT
1 GTTAATTACCATGTAAGT
78859899 CCACTCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (18 bp):
GTTAATTACCATGTAAGT
Found at i:78863800 original size:38 final size:38
Alignment explanation
Indices: 78863756--78863842 Score: 165
Period size: 38 Copynumber: 2.3 Consensus size: 38
78863746 GAGGTATTAA
78863756 TTAGGTTAATTAATAAATAATTGGTAAAATATCTAATT
1 TTAGGTTAATTAATAAATAATTGGTAAAATATCTAATT
*
78863794 TTAGGTTAATTAATAATTAATTGGTAAAATATCTAATT
1 TTAGGTTAATTAATAAATAATTGGTAAAATATCTAATT
78863832 TTAGGTTAATT
1 TTAGGTTAATT
78863843 GCAACCATGA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.45
Consensus pattern (38 bp):
TTAGGTTAATTAATAAATAATTGGTAAAATATCTAATT
Found at i:78865239 original size:19 final size:20
Alignment explanation
Indices: 78865217--78865258 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
78865207 GAAAGTGTTT
*
78865217 ATAATTTT-ATCAAGTCAAA
1 ATAATTTTAAACAAGTCAAA
78865236 ATAATTTTCAAACAAGTCAAA
1 ATAATTTT-AAACAAGTCAAA
78865257 AT
1 AT
78865259 TGCTCAAGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
21 12 0.60
ACGTcount: A:0.50, C:0.12, G:0.05, T:0.33
Consensus pattern (20 bp):
ATAATTTTAAACAAGTCAAA
Found at i:78875279 original size:56 final size:56
Alignment explanation
Indices: 78875193--78876040 Score: 1678
Period size: 56 Copynumber: 15.1 Consensus size: 56
78875183 ACAAGGGATG
78875193 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
78875249 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78875305 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78875361 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78875417 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78875473 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78875529 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78875585 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78875641 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78875697 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78875753 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78875809 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78875865 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78875921 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
78875977 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
78876033 ATGGGCAA
1 ATGGGCAA
78876041 TAAACTAATA
Statistics
Matches: 789, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 789 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:78877991 original size:47 final size:47
Alignment explanation
Indices: 78877895--78878023 Score: 150
Period size: 47 Copynumber: 2.7 Consensus size: 47
78877885 ATTTAGGATT
* * * *
78877895 CGATGTGATGAATGTGAAAGCGTATATATATGTGATAAGGTCTAATGGC
1 CGATGTGATGAATGTGAAA--GTGTATATATGTGACAAGGGCGAATGGC
* *
78877944 CGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGGCGAGTGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGGCGAATGGC
* * * *
78877991 CAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGA
78878024 TAAGTCCCGA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
47 51 0.73
49 19 0.27
ACGTcount: A:0.32, C:0.08, G:0.33, T:0.28
Consensus pattern (47 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGGCGAATGGC
Found at i:78878202 original size:37 final size:37
Alignment explanation
Indices: 78878146--78878224 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
78878136 CCGAGCTCTA
* * * *
78878146 AAGACCCGATGACTACGTGTGGGGATTTTGTTCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
78878183 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
78878220 AAGAC
1 AAGAC
78878225 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:78880618 original size:78 final size:79
Alignment explanation
Indices: 78880497--78880694 Score: 231
Period size: 78 Copynumber: 2.5 Consensus size: 79
78880487 TATCATTAAT
* ** * *
78880497 ATATTTAAAGTAGTATGCTTACACTTTATGTAGTTTGAAACAGGG-GGAAGATCTAGGAAAATCA
1 ATATTTTAAGTAGTATGCTTATGCTTTATGTAGTCTGAAACAGGGAGGAAGATCCAGGAAAATCA
*
78880561 ACAACATGGAAAAC
66 ACAACATAGAAAAC
* * * * * ***
78880575 ATATTTTAAGTAGTATGTTTATGCTTAATGTAGTCTGAGACAGGGAAGGAGGGTCCAGGATGGTC
1 ATATTTTAAGTAGTATGCTTATGCTTTATGTAGTCTGAAACAGGG-AGGAAGATCCAGGAAAATC
78880640 AACAACATAGAAAAC
65 AACAACATAGAAAAC
*
78880655 --ATTTTAAGTAGTATGCTTATGCTTTATGTTGTCTGAAACA
1 ATATTTTAAGTAGTATGCTTATGCTTTATGTAGTCTGAAACA
78880695 AGAGAGGAGG
Statistics
Matches: 100, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
78 74 0.74
80 26 0.26
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (79 bp):
ATATTTTAAGTAGTATGCTTATGCTTTATGTAGTCTGAAACAGGGAGGAAGATCCAGGAAAATCA
ACAACATAGAAAAC
Found at i:78880703 original size:78 final size:77
Alignment explanation
Indices: 78880558--78880729 Score: 231
Period size: 78 Copynumber: 2.2 Consensus size: 77
78880548 TCTAGGAAAA
* * *
78880558 TCAACAACATGGAAAACATATTTTAAGTAGTATGTTTATGCTTAATGTAGTCTGAGACAGGGAAG
1 TCAACAACAT-GAAAACA-ATTTTAAGTAGTATGCTTATGCTTAATGTAGTCTGAAACAGAGAAG
*
78880623 GAGGGTCCAGGATGG
64 GA-GGTCCAGAATGG
* *
78880638 TCAACAACATAGAAAAC-ATTTTAAGTAGTATGCTTATGCTTTATGTTGTCTGAAACA-AGAGAG
1 TCAACAACAT-GAAAACAATTTTAAGTAGTATGCTTATGCTTAATGTAGTCTGAAACAGAGA-AG
78880701 GAGGTCCAGAATGG
64 GAGGTCCAGAATGG
78880715 TCAACAACATGAAAA
1 TCAACAACATGAAAA
78880730 TACTGTGAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
76 5 0.06
77 23 0.27
78 40 0.48
80 16 0.19
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (77 bp):
TCAACAACATGAAAACAATTTTAAGTAGTATGCTTATGCTTAATGTAGTCTGAAACAGAGAAGGA
GGTCCAGAATGG
Found at i:78882323 original size:296 final size:295
Alignment explanation
Indices: 78881317--78883109 Score: 2473
Period size: 296 Copynumber: 6.0 Consensus size: 295
78881307 AATTCACTCG
* * * * *
78881317 ATGATTAAAAGGGAGAAGATAATTAATATCTATTTGGAACCA-AAGTTTTGTTCAATACGAGAAA
1 ATGAATAAAAGGGAGAAGATAATTAATATATATTTGGAACCACGAGTTTTATTCAATATGAGAAA
* ** *** *
78881381 ACATTTGGTACATGAAAGACATAGCTTTAGTATTTGTTCTTATTTTCTAGCAGCTCCCACCAACA
66 ACATTTGGTACATGAAAGACATAACTTTAGTACCTGTTCTTATTTTCTAATGGCTCCCCCCAACA
* * * *
78881446 ACGGCGTAAAAAGCTTTTGGTAATTTATACCATGACCTCTCCCCAAATTTTTTGCCCAAACAATC
131 ATGGCGTAAAAAGCTTTTGGTAATTTACACCATGACCTCTCCCCAAATGTCTTGCCCAAACAATC
* * * ** * *
78881511 TTATTTTCCTTTTAATCAGAACCTTGGATTCATTCTAAGGCCCTCCAAGGTCACCTTCTTGTTGA
196 TTATTTTCCTTTTAATCAAAACCTTGAATTCATTCTGAGGCCCTCCATTGTCGCCTTCGTGTTGA
78881576 GGTCTTGCCATGAGAGTGATTTCATCATATGGTAGCCAATATTTGTA
261 GGTCTTGCCATGAGAGTGA-TT--TC--AT--T-----ATATTTGTA
* * * *
78881623 ATGAATAAAAGGGATAAGATAATTAATATATATTTGGAACCACGAATTTTATTCAATATAAGGAA
1 ATGAATAAAAGGGAGAAGATAATTAATATATATTTGGAACCACGAGTTTTATTCAATATGAGAAA
* * ** ** **
78881688 ATATTTGGTACATAAAAGACATAACTTTAGTATTTGTTCTTATTTTCTAGCGGCTCCTACCAACA
66 ACATTTGGTACATGAAAGACATAACTTTAGTACCTGTTCTTATTTTCTAATGGCTCCCCCCAACA
* * * * *
78881753 ATGGCATAAAAAGCTTTTTGATAATTTACACGATGACCTCTCCCCAAATGTCTTGCCTAAATAAT
131 ATGGCGTAAAAAGC-TTTTGGTAATTTACACCATGACCTCTCCCCAAATGTCTTGCCCAAACAAT
* * * * *
78881818 CTTATTTTCCTTTTAATCAAAACCTTAAAAATCATTCTGAGGCCTTCCATTGCCGCCTTCTTGTT
195 CTTATTTTCCTTTTAATCAAAACCTT-GAATTCATTCTGAGGCCCTCCATTGTCGCCTTCGTGTT
78881883 GAGGTCTTGCCATGAGAGTGATTTCGTCATTTGGTAGCCAATATTTGTA
259 GAGGTCTTGCCATGAGAGTGA-TT--TCA--T--T-----ATATTTGTA
78881932 ATGAATAAAAGGGAGAAGATAATTAATATATATTTGGAACCACGAGTTTTATTCAATATGAGAAA
1 ATGAATAAAAGGGAGAAGATAATTAATATATATTTGGAACCACGAGTTTTATTCAATATGAGAAA
*
78881997 ACATTTGGTATATGAAAGACATAACTTTAGTACCTGTTCTTATTTTCTAATGGCTCCCCCCAACA
66 ACATTTGGTACATGAAAGACATAACTTTAGTACCTGTTCTTATTTTCTAATGGCTCCCCCCAACA
78882062 ATGGCGTAAAAAGCTTTTGGTAATTTACACCATGACCTCTCCCCACAATGTCTTGCCCAAACAAT
131 ATGGCGTAAAAAGCTTTTGGTAATTTACACCATGACCTCTCCCCA-AATGTCTTGCCCAAACAAT
* *
78882127 CTTATTTTCCTTTTAATGAAAATCTTGAATTCATTCTGAGGCCCTCCATTGTCGCCTTCGTGTTG
195 CTTATTTTCCTTTTAATCAAAACCTTGAATTCATTCTGAGGCCCTCCATTGTCGCCTTCGTGTTG
78882192 AGGTCTTGCCATGAGAGTGATTTCATTATATTTGTA
260 AGGTCTTGCCATGAGAGTGATTTCATTATATTTGTA
*
78882228 ATGAATAAAAGGGAGAAGATAATTAATATATATTTGGAACCACGGGTTTTATTCAATATGA-AGA
1 ATGAATAAAAGGGAGAAGATAATTAATATATATTTGGAACCACGAGTTTTATTCAATATGAGA-A
* ** * **
78882292 AATATTCAGTACATGAAAGACATAGCTTTAGTACCTACTCTTATTTTCTAATGGCTCCCCCCAAC
65 AACATTTGGTACATGAAAGACATAACTTTAGTACCTGTTCTTATTTTCTAATGGCTCCCCCCAAC
78882357 AATGGCGTAAAAAGCTTTTGGTAATTTACACCATGACCTCTCCCCACAATGTCTTGCCCAAACAA
130 AATGGCGTAAAAAGCTTTTGGTAATTTACACCATGACCTCTCCCCA-AATGTCTTGCCCAAACAA
* *
78882422 TCTTATTTTCCTTTTAATGAAAATCTTGAATTCATTCTGAGGCCCTCCATTGTCGCCTTCGTGTT
194 TCTTATTTTCCTTTTAATCAAAACCTTGAATTCATTCTGAGGCCCTCCATTGTCGCCTTCGTGTT
78882487 GAGGTCTTGCCATGAGAGTGATTTCATTATATTTGTA
259 GAGGTCTTGCCATGAGAGTGATTTCATTATATTTGTA
78882524 ATGAATAAAAGGGAGAAGATAATTAATATATATTTGGAACCACGAGTTTTATTCAATATGAGAAA
1 ATGAATAAAAGGGAGAAGATAATTAATATATATTTGGAACCACGAGTTTTATTCAATATGAGAAA
*
78882589 ACATTTGGTATATGAAAGACATAACTTTAGTACCTGTTCTTATTTTCTAATGGCTCCCCCCAACA
66 ACATTTGGTACATGAAAGACATAACTTTAGTACCTGTTCTTATTTTCTAATGGCTCCCCCCAACA
78882654 ATGGCGTAAAAAGCTTTTGGTAATTTACACCATGACCTCTCCCCACAATGTCTTGCCCAAACAAT
131 ATGGCGTAAAAAGCTTTTGGTAATTTACACCATGACCTCTCCCCA-AATGTCTTGCCCAAACAAT
* *
78882719 CTTATTTTCCTTTTAATGAAAATCTTGAATTCATTCTGAGGCCCTCCATTGTCGCCTTCGTGTTG
195 CTTATTTTCCTTTTAATCAAAACCTTGAATTCATTCTGAGGCCCTCCATTGTCGCCTTCGTGTTG
78882784 AGGTCTTGCCATGAGAGTGATTTCATTATATTTGTA
260 AGGTCTTGCCATGAGAGTGATTTCATTATATTTGTA
* *
78882820 ATGAATAAAAGGGAGAAGATAATTAATATCTATTTGGAACCA-TAGGTTTTATTCAATATGA-AG
1 ATGAATAAAAGGGAGAAGATAATTAATATATATTTGGAACCACGA-GTTTTATTCAATATGAGA-
* ** * **
78882883 AAATATTCAGTACATGAAAGACATAGCTTTAGTACCTACTCTTATTTTCTAATGGCTCCCCCCAA
64 AAACATTTGGTACATGAAAGACATAACTTTAGTACCTGTTCTTATTTTCTAATGGCTCCCCCCAA
* * ** * * * *
78882948 CAATGGCATAAAAACCTTTTGACAATTTACATCATGACCTCTCCCCAAATGT-TCTGTCCGAATA
129 CAATGGCGTAAAAAGCTTTTGGTAATTTACACCATGACCTCTCCCCAAATGTCT-TGCCCAAACA
* ** * * *
78883012 ATCTTATTTTCCTTTTAATCAGAACCTTGAATTCATTCTGA-GCTTTTCCATTGTCGCATTCCTA
193 ATCTTATTTTCCTTTTAATCAAAACCTTGAATTCATTCTGAGGC-CCTCCATTGTCGCCTTCGTG
* * *
78883076 TTAAGGTCTTGCCATGAAAGTGATTTCATCATAT
257 TTGAGGTCTTGCCATGAGAGTGATTTCATTATAT
78883110 GGGTTCAGTC
Statistics
Matches: 1372, Mismatches: 103, Indels: 35
0.91 0.07 0.02
Matches are distributed among these distances:
294 3 0.00
295 99 0.07
296 738 0.54
297 1 0.00
301 1 0.00
303 1 0.00
305 3 0.00
306 39 0.03
307 91 0.07
308 151 0.11
309 245 0.18
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (295 bp):
ATGAATAAAAGGGAGAAGATAATTAATATATATTTGGAACCACGAGTTTTATTCAATATGAGAAA
ACATTTGGTACATGAAAGACATAACTTTAGTACCTGTTCTTATTTTCTAATGGCTCCCCCCAACA
ATGGCGTAAAAAGCTTTTGGTAATTTACACCATGACCTCTCCCCAAATGTCTTGCCCAAACAATC
TTATTTTCCTTTTAATCAAAACCTTGAATTCATTCTGAGGCCCTCCATTGTCGCCTTCGTGTTGA
GGTCTTGCCATGAGAGTGATTTCATTATATTTGTA
Found at i:78884410 original size:6 final size:6
Alignment explanation
Indices: 78884399--78884429 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
78884389 ACAACACCTT
78884399 TCTCCA TCTCCA TCTCCA TCTCCA TCTCCA T
1 TCTCCA TCTCCA TCTCCA TCTCCA TCTCCA T
78884430 TCTATAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.48, G:0.00, T:0.35
Consensus pattern (6 bp):
TCTCCA
Found at i:78891465 original size:115 final size:115
Alignment explanation
Indices: 78891263--78891491 Score: 395
Period size: 115 Copynumber: 2.0 Consensus size: 115
78891253 GGGTTGCACT
*
78891263 AAAATTGGAGCTTCAGTCAAATAAGTTTTTAGTTGATCAAAACATTTCTGACATTTCTCCGTCCA
1 AAAATTGGAGCTTCAGTCAAATAAGTTTTCAGTTGATCAAAACATTTCTGACATTTCTCCGTCCA
*
78891328 TTCGAACTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCC
66 CTCGAACTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCC
* * ** *
78891378 AAAATTGGAGCTTCAGTCAAATGAGTTTTCAGTTGGTTGAAACTTTTCTGACATTTCTCCGTCCA
1 AAAATTGGAGCTTCAGTCAAATAAGTTTTCAGTTGATCAAAACATTTCTGACATTTCTCCGTCCA
78891443 CTCGAACTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATC
66 CTCGAACTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATC
78891492 ATCGAGAAAC
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
115 107 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (115 bp):
AAAATTGGAGCTTCAGTCAAATAAGTTTTCAGTTGATCAAAACATTTCTGACATTTCTCCGTCCA
CTCGAACTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCC
Found at i:78897840 original size:28 final size:28
Alignment explanation
Indices: 78897799--78897901 Score: 152
Period size: 28 Copynumber: 3.7 Consensus size: 28
78897789 AAGTAGTTGT
*
78897799 GCCTGATGGACCATATGAATGTGATTGG
1 GCCTGATGGGCCATATGAATGTGATTGG
* * **
78897827 GCCTGATGGGCCATGTGAATGAGATTAA
1 GCCTGATGGGCCATATGAATGTGATTGG
78897855 GCCTGATGGGCCATATGAATGTGATTGG
1 GCCTGATGGGCCATATGAATGTGATTGG
*
78897883 GCCTGATGGGCCATGTGAA
1 GCCTGATGGGCCATATGAA
78897902 CGAGATTGCA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (28 bp):
GCCTGATGGGCCATATGAATGTGATTGG
Found at i:78897885 original size:56 final size:56
Alignment explanation
Indices: 78897799--78897908 Score: 202
Period size: 56 Copynumber: 2.0 Consensus size: 56
78897789 AAGTAGTTGT
*
78897799 GCCTGATGGACCATATGAATGTGATTGGGCCTGATGGGCCATGTGAATGAGATTAA
1 GCCTGATGGACCATATGAATGTGATTGGGCCTGATGGGCCATGTGAACGAGATTAA
*
78897855 GCCTGATGGGCCATATGAATGTGATTGGGCCTGATGGGCCATGTGAACGAGATT
1 GCCTGATGGACCATATGAATGTGATTGGGCCTGATGGGCCATGTGAACGAGATT
78897909 GCACCTAAAG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.25, C:0.15, G:0.34, T:0.26
Consensus pattern (56 bp):
GCCTGATGGACCATATGAATGTGATTGGGCCTGATGGGCCATGTGAACGAGATTAA
Found at i:78898500 original size:161 final size:161
Alignment explanation
Indices: 78898227--78898566 Score: 436
Period size: 161 Copynumber: 2.1 Consensus size: 161
78898217 TAATAAAAAG
* * *
78898227 AAATTA-CTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCCTAATTTGTGAAATTACCAA
1 AAATTATC-GAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAATTTATAAAATTACCAA
*
78898291 AACACCTTCGATTGTAAAATTATCAAAACACCCTCGATTTGTAAAATTA-TCGAAACACCCTCAA
65 AACACCCTCGATTGTAAAATTATCAAAACACCCTCGATTTGTAAAATTACT-GAAACACCCTCAA
* *
78898355 TTTGTGAAATTATCGAAATACCCTCGT-GTTGTA
129 TTTGTAAAATTATCGAAATACCCTCATAG-TGTA
** * ** **
78898388 AAATTATCGAAATACCCTCGATTTGTAAAATTATTAAAATACCCTTGGTTTATAAAATTACTGAA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAATTTATAAAATTACCAAA
* ** * *
78898453 ATACCCTCGATTTGTAAAATTATTGAAATA-CCTCGATTTGTAAAATTACTGAAACACCCTCGAT
66 ACACCCTCGA-TTGTAAAATTATCAAAACACCCTCGATTTGTAAAATTACTGAAACACCCTCAAT
* *
78898517 TTGTAAAATTATCGAAATATCCTTATAGTGTA
130 TTGTAAAATTATCGAAATACCCTCATAGTGTA
78898549 AAATTATCGAAATACCCT
1 AAATTATCGAAATACCCT
78898567 TGTAGTGTAA
Statistics
Matches: 155, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
161 136 0.88
162 19 0.12
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.33
Consensus pattern (161 bp):
AAATTATCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAATTTATAAAATTACCAAA
ACACCCTCGATTGTAAAATTATCAAAACACCCTCGATTTGTAAAATTACTGAAACACCCTCAATT
TGTAAAATTATCGAAATACCCTCATAGTGTA
Found at i:78898579 original size:27 final size:27
Alignment explanation
Indices: 78898227--78898566 Score: 372
Period size: 27 Copynumber: 12.7 Consensus size: 27
78898217 TAATAAAAAG
78898227 AAATTA-CTGAAATACCCTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * *
78898254 AAATTACCGAAATACCC-CTAATTTGTG
1 AAATTATCGAAATACCCTC-GATTTGTA
* * * *
78898281 AAATTACCAAAACACCTTCGA-TTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* *
78898307 AAATTATCAAAACACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
* * *
78898334 AAATTATCGAAACACCCTCAATTTGTG
1 AAATTATCGAAATACCCTCGATTTGTA
78898361 AAATTATCGAAATACCCTCG-TGTTGTA
1 AAATTATCGAAATACCCTCGAT-TTGTA
78898388 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
** * * *
78898415 AAATTATTAAAATACCCTTGGTTTATA
1 AAATTATCGAAATACCCTCGATTTGTA
78898442 AAATTA-CTGAAATACCCTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
*
78898469 AAATTATTGAAATA-CCTCGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTA
*
78898495 AAATTA-CTGAAACACCCTCGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTA
* * *
78898522 AAATTATCGAAATATCCT-TATAGTGTA
1 AAATTATCGAAATACCCTCGAT-TTGTA
78898549 AAATTATCGAAATACCCT
1 AAATTATCGAAATACCCT
78898567 TGTAGTGTAA
Statistics
Matches: 268, Mismatches: 33, Indels: 24
0.82 0.10 0.07
Matches are distributed among these distances:
26 50 0.19
27 214 0.80
28 4 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.33
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTGTA
Found at i:78898590 original size:27 final size:27
Alignment explanation
Indices: 78898303--78898606 Score: 146
Period size: 27 Copynumber: 11.3 Consensus size: 27
78898293 CACCTTCGAT
* * * *
78898303 TGTAAAATTATCAAAACACCCTCGAT-T
1 TGTAAAATTATCGAAATACCCT-TATAG
* * *
78898330 TGTAAAATTATCGAAACACCCTCA-ATT
1 TGTAAAATTATCGAAATACCCTTATA-G
* **
78898357 TGTGAAATTATCGAAATACCCTCGT-G
1 TGTAAAATTATCGAAATACCCTTATAG
* *
78898383 TTGTAAAATTATCGAAATACCCTCGAT-T
1 -TGTAAAATTATCGAAATACCCT-TATAG
** * *
78898411 TGTAAAATTATTAAAATACCCTTGGT-T
1 TGTAAAATTATCGAAATACCCTT-ATAG
* * *
78898438 TATAAAATTA-CTGAAATACCCTCGAT-T
1 TGTAAAATTATC-GAAATACCCT-TATAG
* * *
78898465 TGTAAAATTATTGAAATA-CCTCGAT-T
1 TGTAAAATTATCGAAATACCCT-TATAG
* * *
78898491 TGTAAAATTA-CTGAAACACCCTCGAT-T
1 TGTAAAATTATC-GAAATACCCT-TATAG
*
78898518 TGTAAAATTATCGAAATATCCTTATAG
1 TGTAAAATTATCGAAATACCCTTATAG
*
78898545 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTATCGAAATACCCTTATAG
* * * *
78898572 TGTAAAATGACCGACATACCCCTATAG
1 TGTAAAATTATCGAAATACCCTTATAG
78898599 -GATAAAAT
1 TG-TAAAAT
78898607 GATTGTTTTG
Statistics
Matches: 229, Mismatches: 34, Indels: 28
0.79 0.12 0.10
Matches are distributed among these distances:
26 27 0.12
27 200 0.87
28 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (27 bp):
TGTAAAATTATCGAAATACCCTTATAG
Found at i:78898605 original size:134 final size:135
Alignment explanation
Indices: 78898320--78898611 Score: 308
Period size: 134 Copynumber: 2.2 Consensus size: 135
78898310 TTATCAAAAC
** * * *
78898320 ACCCTCGATTTGTAAAATTATCGAAACACCCTCAATTTGTGAAATTATCGAAATACCCTCGTGTT
1 ACCCTCGATAGGTAAAATTATTGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCGTGTT
* * * * *
78898385 GTAAAATTATCGAAATACCCTCGATTTGTAAAATTATTAAAATACCCTTGGTTTATAAAATTACT
66 GTAAAATTATCGAAATACCCTCGATGTGTAAAATTATCAAAATACCCTTGGTGTATAAAATGACC
78898450 GAAAT
131 GAAAT
** * *
78898455 ACCCTCGATTTGTAAAATTATTGAAATA-CCTCGATTTGTAAAATTA-CTGAAACACCCTCGAT-
1 ACCCTCGATAGGTAAAATTATTGAAACACCCTCAATTTGTAAAATTATC-GAAACACCCTCG-TG
* * * *
78898517 TTGTAAAATTATCGAAATATCCT-TATAGTGTAAAATTATCGAAATACCCTT-GTAGTGTAAAAT
64 TTGTAAAATTATCGAAATACCCTCGAT-GTGTAAAATTATCAAAATACCCTTGGT-GTATAAAAT
*
78898580 GACCGACAT
127 GACCGAAAT
* *
78898589 ACCC-CTATAGGATAAAATGATTG
1 ACCCTCGATAGG-TAAAATTATTG
78898612 TTTTGCCTTT
Statistics
Matches: 133, Mismatches: 19, Indels: 11
0.82 0.12 0.07
Matches are distributed among these distances:
133 9 0.07
134 97 0.73
135 27 0.20
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.33
Consensus pattern (135 bp):
ACCCTCGATAGGTAAAATTATTGAAACACCCTCAATTTGTAAAATTATCGAAACACCCTCGTGTT
GTAAAATTATCGAAATACCCTCGATGTGTAAAATTATCAAAATACCCTTGGTGTATAAAATGACC
GAAAT
Found at i:78902301 original size:40 final size:40
Alignment explanation
Indices: 78902224--78902401 Score: 270
Period size: 40 Copynumber: 4.5 Consensus size: 40
78902214 AACCCAAGTA
* *
78902224 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
78902263 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78902303 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
78902343 CCTTTGAGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
78902383 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
78902402 TTATCATCCG
Statistics
Matches: 129, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.11
40 115 0.89
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:78927995 original size:9 final size:9
Alignment explanation
Indices: 78927981--78928005 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
78927971 TGGAATGGTT
78927981 AATTTAGTC
1 AATTTAGTC
78927990 AATTTAGTC
1 AATTTAGTC
78927999 AATTTAG
1 AATTTAG
78928006 CTTGAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (9 bp):
AATTTAGTC
Found at i:78937784 original size:93 final size:92
Alignment explanation
Indices: 78937625--78937792 Score: 214
Period size: 93 Copynumber: 1.8 Consensus size: 92
78937615 TTTGTACGCC
** ** **
78937625 AGTGTAAGACATGTCTGGGACACGCTTCGGCCGCATATGAGAGCCAGTATAAGACCATGTCTGGG
1 AGTGTAAGACATGTCCAGGACACGCTTCACCCAAATATGAGAGCCAGTATAAGACCATGTCTGGG
78937690 ACATGGCATCGACATCTAAACAAGGGCT
66 ACAT-GCATCGACATCTAAACAAGGGCT
* * *
78937718 AGTGTAAGACATGTCCAGGACATGCTTCACCCAAATTATGAGTGCCAG-AGTAAGA-CATGTTTG
1 AGTGTAAGACATGTCCAGGACACGCTTCACCCAAA-TATGAGAGCCAGTA-TAAGACCATGTCTG
78937781 GGACATGCATCG
64 GGACATGCATCG
78937793 GCCTCGACAG
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
92 6 0.09
93 42 0.66
94 16 0.25
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (92 bp):
AGTGTAAGACATGTCCAGGACACGCTTCACCCAAATATGAGAGCCAGTATAAGACCATGTCTGGG
ACATGCATCGACATCTAAACAAGGGCT
Found at i:78940343 original size:43 final size:43
Alignment explanation
Indices: 78940282--78940367 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
78940272 CACTTGGGCG
*
78940282 AATGCCGAGTAAACGAGAGGGGCTGTTTCAAGTGTGGGTCACT
1 AATGCCGAGTAAACGAGAGGGGCTGGTTCAAGTGTGGGTCACT
*
78940325 AATGCCGAGTAAGCGAGAGGGGCTGGTTCAAGTGTGGGTCACT
1 AATGCCGAGTAAACGAGAGGGGCTGGTTCAAGTGTGGGTCACT
78940368 TGACCACTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.24, C:0.16, G:0.37, T:0.22
Consensus pattern (43 bp):
AATGCCGAGTAAACGAGAGGGGCTGGTTCAAGTGTGGGTCACT
Found at i:78945204 original size:27 final size:27
Alignment explanation
Indices: 78945174--78945351 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78945164 ATATTGAGTC
* * * *
78945174 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
78945201 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78945228 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
78945256 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
78945283 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
78945310 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78945337 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78945352 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:78945313 original size:82 final size:81
Alignment explanation
Indices: 78945195--78945350 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78945185 TGCTATATAA
* *
78945195 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
78945260 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
78945277 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
78945341 CACTTAGTGC
65 CACTTAGTGC
78945351 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:78947931 original size:22 final size:22
Alignment explanation
Indices: 78947903--78947978 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
78947893 AAGTGTATAT
78947903 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
78947925 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
78947949 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
78947972 ATGTGAT
1 ATGTGAT
78947979 GGATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:78948012 original size:47 final size:47
Alignment explanation
Indices: 78947690--78948005 Score: 526
Period size: 47 Copynumber: 6.7 Consensus size: 47
78947680 GCTGTCACAG
* *
78947690 ATGTGATGAATGTGAAAGTGTATATATGTGATAAAGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * **
78947737 ATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
78947784 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* * *
78947831 ATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
*
78947878 ATGTGATGAATGTCAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
78947925 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
*
78947972 ATGTGATGGATGTGAAAGTGTATA-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
78948006 TCCCGAAGGG
Statistics
Matches: 252, Mismatches: 17, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
46 10 0.04
47 242 0.96
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:78949623 original size:47 final size:46
Alignment explanation
Indices: 78949552--78949644 Score: 141
Period size: 47 Copynumber: 2.0 Consensus size: 46
78949542 TTATGCTTAC
*
78949552 TCTTTACCTTCCATTCCTTGTAGTTTTGACAAGCCGGTTTGGAGAT
1 TCTTTACCTTCCATTCCTTATAGTTTTGACAAGCCGGTTTGGAGAT
* * *
78949598 NTCTTTCCCTTTCATTCCTTATAGTTTTGTCAAGCCGGTTTGGAGAT
1 -TCTTTACCTTCCATTCCTTATAGTTTTGACAAGCCGGTTTGGAGAT
78949645 CAGGACGATC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.43
Consensus pattern (46 bp):
TCTTTACCTTCCATTCCTTATAGTTTTGACAAGCCGGTTTGGAGAT
Found at i:78951086 original size:44 final size:45
Alignment explanation
Indices: 78951021--78951123 Score: 122
Period size: 44 Copynumber: 2.3 Consensus size: 45
78951011 TTAAGAACTT
* * *
78951021 GCACACTTAGTG-CATAAATGTTTAGCCGAAGCTA-CAACGATATC
1 GCACACTTAGTGCCATAAATGTTAAACCAAAGCTATC-ACGATATC
* * *
78951065 GCACACTTAGTGCCAT-CATGTTAAACCAAAGTTATCTCGATATC
1 GCACACTTAGTGCCATAAATGTTAAACCAAAGCTATCACGATATC
78951109 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
78951124 CACATAACCG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
44 47 0.92
45 4 0.08
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (45 bp):
GCACACTTAGTGCCATAAATGTTAAACCAAAGCTATCACGATATC
Found at i:78953239 original size:60 final size:61
Alignment explanation
Indices: 78953126--78953241 Score: 155
Period size: 60 Copynumber: 1.9 Consensus size: 61
78953116 TTCCTGCTGG
*
78953126 TTTCATGCACCTTGCCGTCCAGCCCAAATAGACCTTGGGTCTATTTGCCTTTTAAACCCNGA
1 TTTCATGCACCTTGCCGTCCAGCCCAAATAGACCTTGGGTCTAATTGCCTTTTAAACCC-GA
* * * **
78953188 TTTCATGCCCCTTG-CGTCCATCCCAAA-ATATTTTGGGTCTAATTGCCTTTTAAA
1 TTTCATGCACCTTGCCGTCCAGCCCAAATAGACCTTGGGTCTAATTGCCTTTTAAA
78953242 ACCCTCCTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
60 23 0.48
61 12 0.25
62 13 0.27
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.34
Consensus pattern (61 bp):
TTTCATGCACCTTGCCGTCCAGCCCAAATAGACCTTGGGTCTAATTGCCTTTTAAACCCGA
Found at i:78967069 original size:90 final size:90
Alignment explanation
Indices: 78966912--78967076 Score: 215
Period size: 90 Copynumber: 1.8 Consensus size: 90
78966902 TGCCAAAGCC
* * * * * * * *
78966912 ATGTCCCCGATATGGTCTTACATAGGCCTACATATTGATGCCATATCCCAGATATGGTCTTATAT
1 ATGTCCCAGACATGGTCTTACAGAGACCTACATATCGATGCCATATCCCAGACATAGTCTTACAT
*
78966977 GAAGTCTCATGCCGGTGCCGATGCA
66 GAAATCTCATGCCGGTGCCGATGCA
* *
78967002 ATGTCCCAGACATGGTCTTACACGAGACCT-CATATCGGTGCCATGTCCCAGACATAGTCTTACA
1 ATGTCCCAGACATGGTCTTACA-GAGACCTACATATCGATGCCATATCCCAGACATAGTCTTACA
78967066 TGAAATCTCAT
65 TGAAATCTCAT
78967077 ATCAACACCA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
90 58 0.92
91 5 0.08
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (90 bp):
ATGTCCCAGACATGGTCTTACAGAGACCTACATATCGATGCCATATCCCAGACATAGTCTTACAT
GAAATCTCATGCCGGTGCCGATGCA
Found at i:78967093 original size:42 final size:42
Alignment explanation
Indices: 78967005--78967093 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 42
78966995 CGATGCAATG
* * **** *
78967005 TCCCAGACATGGTCTTACACGAGACCTCATATCGGTGCCATG
1 TCCCAGACATAGTCTTACACGAAACCTCATATCAACACCATA
* *
78967047 TCCCAGACATAGTCTTACATGAAATCTCATATCAACACCATA
1 TCCCAGACATAGTCTTACACGAAACCTCATATCAACACCATA
78967089 TCCCA
1 TCCCA
78967094 TATATGGTTA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.25
Consensus pattern (42 bp):
TCCCAGACATAGTCTTACACGAAACCTCATATCAACACCATA
Found at i:78968657 original size:31 final size:31
Alignment explanation
Indices: 78968621--78968730 Score: 202
Period size: 31 Copynumber: 3.5 Consensus size: 31
78968611 TTTAACGGTT
78968621 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
78968652 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
78968683 ACTGGGCCGAAGCCTTTTCATAAATCATATT
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
78968714 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
78968731 ACTGTAAACG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 77 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:78968979 original size:26 final size:26
Alignment explanation
Indices: 78968936--78969073 Score: 199
Period size: 26 Copynumber: 5.3 Consensus size: 26
78968926 CTCGAGGCCT
78968936 AGCCTCTTTT-AAT-AACTGGGGCATA
1 AGCC-CTTTTCAATAAACTGGGGCATA
* *
78968961 AGTCCTTTTCGATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
78968987 AGCCCTTTTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
** *
78969013 AGCCCTTTTCGGTAAACTGGGTCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
78969039 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
78969065 AGCCCTTTT
1 AGCCCTTTT
78969074 GCACTTCCTC
Statistics
Matches: 99, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
24 5 0.05
25 5 0.05
26 89 0.90
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:78969929 original size:27 final size:27
Alignment explanation
Indices: 78969850--78969936 Score: 131
Period size: 27 Copynumber: 3.2 Consensus size: 27
78969840 TATTCGTCAT
* *
78969850 TTTACCATACAGGGG-TATTACGGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCTC
78969877 TTTACCCTACAGGGGCTTTACGGTCTC
1 TTTACCCTACAGGGGCTTTACGGTCTC
*
78969904 TTTACCCTACAGGGGCTTTACGGTCTT
1 TTTACCCTACAGGGGCTTTACGGTCTC
78969931 TTTACC
1 TTTACC
78969937 TAATAGGCGT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.34
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCTC
Found at i:78970020 original size:27 final size:27
Alignment explanation
Indices: 78969990--78970041 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
78969980 GTAAATCTAC
*
78969990 AAACTAATGGTATTT-CAGTAATTTTGT
1 AAACCAATGGTATTTCCA-TAATTTTGT
78970017 AAACCAATGGTATTTCCATAATTTT
1 AAACCAATGGTATTTCCATAATTTT
78970042 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (27 bp):
AAACCAATGGTATTTCCATAATTTTGT
Found at i:78970177 original size:81 final size:80
Alignment explanation
Indices: 78970080--78970284 Score: 306
Period size: 81 Copynumber: 2.5 Consensus size: 80
78970070 TGTATATCAG
*
78970080 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CTAGTGGTATTTT-
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAG-GGTATTTTA
78970143 GCTAATTTTACAAACTA
65 GC-AATTTTACAAACTA
* *
78970160 GGAGTATTTTGGTAATTTTACAAATTGAGGGTATTTCTGTAATTTTACAAACCAAGGGTATTTTA
1 GG-GTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTTA
78970225 GCAATTTTACAAACTA
65 GCAATTTTACAAACTA
** * *
78970241 GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTT
78970285 TGTAAATCGA
Statistics
Matches: 114, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
80 39 0.34
81 70 0.61
82 5 0.04
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTTAG
CAATTTTACAAACTA
Found at i:78970293 original size:27 final size:27
Alignment explanation
Indices: 78970080--78970392 Score: 247
Period size: 27 Copynumber: 11.6 Consensus size: 27
78970070 TGTATATCAG
*
78970080 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* * *
78970107 GGGTATTTCGGTAATTTCACAAA-CTA
1 GGGTATTTTGGTAATTTTACAAATCGA
* *
78970133 GTGGTATTTTGCTAATTTTACAAA-CTA
1 G-GGTATTTTGGTAATTTTACAAATCGA
*
78970160 GGAGTATTTTGGTAATTTTACAAATTGA
1 GG-GTATTTTGGTAATTTTACAAATCGA
* *
78970188 GGGTATTTCT-GTAATTTTACAAACCAA
1 GGGTATTT-TGGTAATTTTACAAATCGA
* * *
78970215 GGGTATTTTAGCAATTTTACAAA-CTA
1 GGGTATTTTGGTAATTTTACAAATCGA
**
78970241 GGGTATTTTGGTAATTTTACTGATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
**
78970268 GGGTATTTTGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
****** * *
78970295 GGGTAAAACAATAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
**** * *
78970322 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCGA
* * * *
78970349 TGGTACTTTGGTAATTTTACAATTTGA
1 GGGTATTTTGGTAATTTTACAAATCGA
**
78970376 GGGTATTTCAGTAATTT
1 GGGTATTTTGGTAATTT
78970393 GGTAAACTAA
Statistics
Matches: 233, Mismatches: 47, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
26 25 0.11
27 204 0.88
28 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCGA
Found at i:78977067 original size:29 final size:29
Alignment explanation
Indices: 78977030--78977089 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
78977020 AATTCACATA
78977030 TTATAAACATAGAAAATAATTAAAATATT
1 TTATAAACATAGAAAATAATTAAAATATT
78977059 TTATAAACATAGAAAATAATTAAAATATT
1 TTATAAACATAGAAAATAATTAAAATATT
78977088 TT
1 TT
78977090 TTTGACTCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (29 bp):
TTATAAACATAGAAAATAATTAAAATATT
Found at i:78977641 original size:19 final size:19
Alignment explanation
Indices: 78977617--78977656 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
78977607 TGTGTCATCA
*
78977617 TAAATTCATAGGCATAACT
1 TAAATTCATAGACATAACT
**
78977636 TAAATTTGTAGACATAACT
1 TAAATTCATAGACATAACT
78977655 TA
1 TA
78977657 CACATTTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGACATAACT
Found at i:78979635 original size:47 final size:47
Alignment explanation
Indices: 78979540--78979659 Score: 147
Period size: 47 Copynumber: 2.6 Consensus size: 47
78979530 GATAAGTACA
*
78979540 TATACCATGGCTCGTAGCCATATCAAGGTAACTTATCCCAGAGAACC
1 TATACCATGGCTCGTAGCCAAATCAAGGTAACTTATCCCAGAGAACC
* ***
78979587 TATACCATGGCTCGTAGACAAATCAAGGTAACTCT-TCTTTGA-ATACC
1 TATACCATGGCTCGTAGCCAAATCAAGGTAACT-TATCCCAGAGA-ACC
78979634 TATACCATGG-TCCGTAGCCAAATCAA
1 TATACCATGGCT-CGTAGCCAAATCAA
78979660 TGTATTATTA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
46 2 0.03
47 61 0.95
48 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (47 bp):
TATACCATGGCTCGTAGCCAAATCAAGGTAACTTATCCCAGAGAACC
Found at i:78990102 original size:50 final size:50
Alignment explanation
Indices: 78990040--78990145 Score: 194
Period size: 50 Copynumber: 2.1 Consensus size: 50
78990030 ATGGAAGTGG
78990040 GAAAGAGCAACAATGGACTTTGTGAGTGGGTTACCTTCGACACCCACCAA
1 GAAAGAGCAACAATGGACTTTGTGAGTGGGTTACCTTCGACACCCACCAA
* *
78990090 GAAAGAGTAACAATGGACTTTGTGAGTGGGTTACCTTTGACACCCACCAA
1 GAAAGAGCAACAATGGACTTTGTGAGTGGGTTACCTTCGACACCCACCAA
78990140 GAAAGA
1 GAAAGA
78990146 TTCGGTGTGG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.21
Consensus pattern (50 bp):
GAAAGAGCAACAATGGACTTTGTGAGTGGGTTACCTTCGACACCCACCAA
Found at i:78998970 original size:43 final size:43
Alignment explanation
Indices: 78998905--78999027 Score: 169
Period size: 43 Copynumber: 2.9 Consensus size: 43
78998895 CTAGTATTGA
78998905 TCTGTTAAGGTTGCAC-AGGTCACACGAGACGACTGTGGACTAT
1 TCTGTTAAGGTTGCACGA-GTCACACGAGACGACTGTGGACTAT
*
78998948 TCTGTTAAGGTTGCACGAGTCACATGAGACGACTGTGGACTAT
1 TCTGTTAAGGTTGCACGAGTCACACGAGACGACTGTGGACTAT
* * * *
78998991 TCTATTAAGGTCGCACGGGTCGA-GCGAGACGACTGTG
1 TCTGTTAAGGTTGCACGAGTC-ACACGAGACGACTGTG
78999028 CACCTACCGA
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
43 70 0.97
44 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (43 bp):
TCTGTTAAGGTTGCACGAGTCACACGAGACGACTGTGGACTAT
Found at i:78999110 original size:22 final size:21
Alignment explanation
Indices: 78999063--78999141 Score: 77
Period size: 22 Copynumber: 3.6 Consensus size: 21
78999053 TGATCTGATT
*
78999063 ATGGCTCTGTGCCATTCTGAA
1 ATGGCTCTGTGCCATCCTGAA
*
78999084 GATGGCTCTGTGCCATCCCGATA
1 -ATGGCTCTGTGCCATCCTGA-A
** * *
78999107 ATGGCTCCATGCCATCTTGACC
1 ATGGCTCTGTGCCATCCTGA-A
78999129 ATGGCTCTGTGCC
1 ATGGCTCTGTGCC
78999142 GATATATTAC
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
22 45 0.98
23 1 0.02
ACGTcount: A:0.16, C:0.30, G:0.24, T:0.29
Consensus pattern (21 bp):
ATGGCTCTGTGCCATCCTGAA
Found at i:79002492 original size:27 final size:27
Alignment explanation
Indices: 79002454--79002537 Score: 123
Period size: 27 Copynumber: 3.1 Consensus size: 27
79002444 GGTCATTAAG
*
79002454 ACCCTCAGTTTGTAAGATTACTGAAAT
1 ACCCCCAGTTTGTAAGATTACTGAAAT
*
79002481 ACCCCCAGTTTGTAAGATTATTGAAAT
1 ACCCCCAGTTTGTAAGATTACTGAAAT
* * *
79002508 ACCCCCTGTTTGTAAAATTACCGAAAT
1 ACCCCCAGTTTGTAAGATTACTGAAAT
79002535 ACC
1 ACC
79002538 TTAGTCAGGT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (27 bp):
ACCCCCAGTTTGTAAGATTACTGAAAT
Found at i:79002879 original size:43 final size:43
Alignment explanation
Indices: 79002827--79002909 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 43
79002817 CCAGTATTGA
* *
79002827 TCTGTTAAGGTTGCACAGGTCGCA-CGAGATGACTGTGGACTAT
1 TCTGTTAAGGTCGCACAGGTCG-AGCGAGACGACTGTGGACTAT
*
79002870 TCTGTTAAGGTCGCACGGGTCGAGCGAGACGACTGTGGAC
1 TCTGTTAAGGTCGCACAGGTCGAGCGAGACGACTGTGGAC
79002910 CTACCGATGG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 1 0.03
43 35 0.97
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (43 bp):
TCTGTTAAGGTCGCACAGGTCGAGCGAGACGACTGTGGACTAT
Found at i:79003049 original size:32 final size:31
Alignment explanation
Indices: 79003008--79003114 Score: 119
Period size: 32 Copynumber: 3.4 Consensus size: 31
79002998 CATCTTGATC
*
79003008 ATGGCTCTGTGCCGATCATATTACCGTTACTG
1 ATGGCTCTGTGCCGATCATATTATCG-TACTG
**
79003040 ATGGCTCTGTATCGATCATATTATCG-ACTG
1 ATGGCTCTGTGCCGATCATATTATCGTACTG
* *
79003070 ATGGCTCTGTGCC-AGTCATACTATAGCTACTG
1 ATGGCTCTGTGCCGA-TCATATTATCG-TACTG
*
79003102 ATGGCTTTGTGCC
1 ATGGCTCTGTGCC
79003115 ATTCTGTTTA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 24 0.38
32 39 0.61
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (31 bp):
ATGGCTCTGTGCCGATCATATTATCGTACTG
Found at i:79004931 original size:47 final size:47
Alignment explanation
Indices: 79004831--79004958 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 47
79004821 AATCGATAAG
* *
79004831 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCAGAG
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAGAA
* * * * * *
79004878 TTCCTATGCCATGGCCCATAGCCAAATCAAGGTAACTCCTCTCTGAA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAGAA
* *
79004925 TACCTATACCATGGCCTGTAGCCATATCAAGGTA
1 TACCTATACCATGGCCCGTAGCCAAATCAAGGTA
79004959 TTATTCGTAC
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (47 bp):
TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAGAA
Found at i:79010374 original size:42 final size:42
Alignment explanation
Indices: 79010315--79010399 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
79010305 CAAGAAGATT
*
79010315 TATAGCAGATAATGTTGTGGTGGTTTTTGAGCTACTACACTC
1 TATAGCAGATAATGTTGTGGTGGCTTTTGAGCTACTACACTC
* *
79010357 TATAGCAGATAATGTTGTGGTGGCTTTTGAGCTGCTGCACTC
1 TATAGCAGATAATGTTGTGGTGGCTTTTGAGCTACTACACTC
79010399 T
1 T
79010400 TTCAAGAAGA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.21, C:0.15, G:0.26, T:0.38
Consensus pattern (42 bp):
TATAGCAGATAATGTTGTGGTGGCTTTTGAGCTACTACACTC
Found at i:79013283 original size:30 final size:30
Alignment explanation
Indices: 79013239--79013327 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
79013229 CAAAGATAAC
*
79013239 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
79013268 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
79013298 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
79013328 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:79013287 original size:15 final size:14
Alignment explanation
Indices: 79013239--79013321 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
79013229 CAAAGATAAC
*
79013239 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
79013253 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
79013268 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
79013283 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
79013298 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
79013313 AAGAAACCC
1 AAGAAACCC
79013322 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:79013327 original size:15 final size:15
Alignment explanation
Indices: 79013250--79013327 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
79013240 AGAAAACCGA
79013250 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
79013265 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
79013279 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
79013294 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
79013310 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
79013325 ATA
1 ATA
79013328 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:79015601 original size:75 final size:75
Alignment explanation
Indices: 79015478--79015626 Score: 289
Period size: 75 Copynumber: 2.0 Consensus size: 75
79015468 CCCTAAACTT
*
79015478 TTGCATATTTACACTTTTTCCCCAAAGCTCGTAAATTAAACTTCAGCCTATTTTCTTATGTTTTA
1 TTGCATATTTACACTTTTTCCCCAAAGCTCGTAAATTAAACTTCAGCCTATTTTCCTATGTTTTA
79015543 TGACATGCTC
66 TGACATGCTC
79015553 TTGCATATTTACACTTTTTCCCCAAAGCTCGTAAATTAAACTTCAGCCTATTTTCCTATGTTTTA
1 TTGCATATTTACACTTTTTCCCCAAAGCTCGTAAATTAAACTTCAGCCTATTTTCCTATGTTTTA
79015618 TGACATGCT
66 TGACATGCT
79015627 GATCATTTTT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42
Consensus pattern (75 bp):
TTGCATATTTACACTTTTTCCCCAAAGCTCGTAAATTAAACTTCAGCCTATTTTCCTATGTTTTA
TGACATGCTC
Found at i:79018361 original size:93 final size:93
Alignment explanation
Indices: 79018249--79018419 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
79018239 GCCCATAAGT
* *
79018249 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79018314 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
79018342 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79018407 CGAGTTCGGATGC
66 CGAGTTCGGATGC
79018420 TCAAACATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Done.