Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 247 of 279
Found at i:80364695 original size:11 final size:12
Alignment explanation
Indices: 80364663--80364693 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
80364653 CTTGCGAGTG
80364663 TTGAAAAAGCCT
1 TTGAAAAAGCCT
80364675 TTGAAAAAGCCT
1 TTGAAAAAGCCT
80364687 TTGAAAA
1 TTGAAAA
80364694 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:80364704 original size:12 final size:12
Alignment explanation
Indices: 80364696--80364720 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80364686 TTTGAAAAGC
80364696 AAAAAGAAAATG
1 AAAAAGAAAATG
80364708 AAAAAGAAAATG
1 AAAAAGAAAATG
80364720 A
1 A
80364721 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:80364717 original size:18 final size:18
Alignment explanation
Indices: 80364690--80364745 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
80364680 AAAGCCTTTG
80364690 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
80364709 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
80364727 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
80364744 AA
1 AA
80364746 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:80364730 original size:30 final size:31
Alignment explanation
Indices: 80364696--80364777 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
80364686 TTTGAAAAGC
*
80364696 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
80364726 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
80364756 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
80364778 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:80370651 original size:27 final size:28
Alignment explanation
Indices: 80370621--80370725 Score: 101
Period size: 27 Copynumber: 3.9 Consensus size: 28
80370611 AAATTACTGA
**
80370621 AATACCCCCAGT-TTGTAAAATGACCAT
1 AATACCCCCAGTAGGGTAAAATGACCAT
* *
80370648 AATA-CCTCTGTAGGGTAAAATGACCAT
1 AATACCCCCAGTAGGGTAAAATGACCAT
* **
80370675 AATA-CCCCTGTAGGGTAAAATGACTGT
1 AATACCCCCAGTAGGGTAAAATGACCAT
* *
80370702 AATA-CCCCTGTATGGTAAAATGAC
1 AATACCCCCAGTAGGGTAAAATGAC
80370726 GATTATGCCC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.07
27 64 0.93
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (28 bp):
AATACCCCCAGTAGGGTAAAATGACCAT
Found at i:80371146 original size:28 final size:28
Alignment explanation
Indices: 80371080--80371148 Score: 68
Period size: 28 Copynumber: 2.5 Consensus size: 28
80371070 TTTGCACTGT
* * * *
80371080 ACTGATACTGT-TTGGGCTTAGTCCCAC
1 ACTGTTACTGTATAGGGCTAAGGCCCAC
** *
80371107 ACTGTTTTTGTATAGGGCTAAGGCCCAG
1 ACTGTTACTGTATAGGGCTAAGGCCCAC
80371135 ACTGTTACTGTATA
1 ACTGTTACTGTATA
80371149 CACTGTATTT
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
27 8 0.25
28 24 0.75
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (28 bp):
ACTGTTACTGTATAGGGCTAAGGCCCAC
Found at i:80383349 original size:6 final size:6
Alignment explanation
Indices: 80383340--80383368 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
80383330 AAACGAAACA
80383340 GAAAGG GAAAGG GAAAGG GAAAGG GAAAG
1 GAAAGG GAAAGG GAAAGG GAAAGG GAAAG
80383369 AAAGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (6 bp):
GAAAGG
Found at i:80383355 original size:18 final size:18
Alignment explanation
Indices: 80383334--80383368 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80383324 AAGCAAAAAC
80383334 GAAACAGAAAGGGAAAGG
1 GAAACAGAAAGGGAAAGG
**
80383352 GAAAGGGAAAGGGAAAG
1 GAAACAGAAAGGGAAAG
80383369 AAAGAAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.03, G:0.43, T:0.00
Consensus pattern (18 bp):
GAAACAGAAAGGGAAAGG
Found at i:80384315 original size:40 final size:38
Alignment explanation
Indices: 80384196--80384328 Score: 110
Period size: 40 Copynumber: 3.4 Consensus size: 38
80384186 CTTCGAGTCT
* * * *
80384196 ATGAGACACTAGGTGTCAGTCAATTACTTCGGTAATTCG
1 ATGAGACACTAGGTGTCAAT-TATTACTTCGATTATTCG
* * *
80384235 ATGAGGCACTAGGTGCCAA-T-TTACTTCGATTCA-GCTG
1 ATGAGACACTAGGTGTCAATTATTACTTCGATT-ATTC-G
*
80384272 ATGAGACATTAGGTGTCAATTTATTACTTCGAATTATTCG
1 ATGAGACACTAGGTGTCAA-TTATTACTTCG-ATTATTCG
* *
80384312 ATGAGGCACTGGGTGTC
1 ATGAGACACTAGGTGTC
80384329 GAACTGGTGT
Statistics
Matches: 73, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
36 10 0.14
37 18 0.25
39 17 0.23
40 24 0.33
41 4 0.05
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (38 bp):
ATGAGACACTAGGTGTCAATTATTACTTCGATTATTCG
Found at i:80392364 original size:21 final size:21
Alignment explanation
Indices: 80392332--80392371 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
80392322 AGCATGTATT
80392332 TTAATGATTGATGATAGTTTA
1 TTAATGATTGATGATAGTTTA
80392353 TTAAT-ATGTGATGATAGTT
1 TTAATGAT-TGATGATAGTT
80392372 ATACAAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (21 bp):
TTAATGATTGATGATAGTTTA
Found at i:80408162 original size:40 final size:40
Alignment explanation
Indices: 80408099--80408214 Score: 180
Period size: 40 Copynumber: 2.9 Consensus size: 40
80408089 CGGGCTTTAA
* * *
80408099 CCGGATATAGCCAC-TCGCTCAAATGCCTTTGGGACTTAGC
1 CCGGATATAG-TACTTCGCACAAATGCCTTCGGGACTTAGC
*
80408139 CCGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGC
80408179 CCGGATATAGTACTTCGCACAAATGCCTTCGGGACT
1 CCGGATATAGTACTTCGCACAAATGCCTTCGGGACT
80408215 NNNNNNNNNN
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
39 1 0.01
40 69 0.99
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80411893 original size:15 final size:16
Alignment explanation
Indices: 80411873--80411902 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
80411863 TATTTTTATG
80411873 TAATTTT-TTTAAAAA
1 TAATTTTCTTTAAAAA
80411888 TAATTTTCTTTAAAA
1 TAATTTTCTTTAAAA
80411903 TTTTTAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TAATTTTCTTTAAAAA
Found at i:80422086 original size:18 final size:18
Alignment explanation
Indices: 80422049--80422087 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
80422039 TGTAAGAAAA
* *
80422049 GGCCTAACACTTTTCCTT
1 GGCCTAACACTTGTCATT
80422067 GGCCTAACACTTGTCATT
1 GGCCTAACACTTGTCATT
80422085 GGC
1 GGC
80422088 GAGGTAGACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.33
Consensus pattern (18 bp):
GGCCTAACACTTGTCATT
Found at i:80424889 original size:24 final size:24
Alignment explanation
Indices: 80424862--80424980 Score: 107
Period size: 24 Copynumber: 5.0 Consensus size: 24
80424852 AAGCAGATTC
*
80424862 CTGGGCAGTCTCTTGGACCGCATG
1 CTGGGCAGTCTCTTGGACCGAATG
* * *
80424886 CTGGGTAGTCTGTTAGG-CTGAATG
1 CTGGGCAGTCTCTT-GGACCGAATG
* *
80424910 CTGGGCAGTCTATT-AAGCCGAATG
1 CTGGGCAGTCTCTTGGA-CCGAATG
* * *
80424934 TTGGGCAGTCTGTTGGGCCGAATG
1 CTGGGCAGTCTCTTGGACCGAATG
* *
80424958 TTGGGCAGTCTCTTGGACAGAAT
1 CTGGGCAGTCTCTTGGACCGAAT
80424981 AATGGGCTGC
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
24 74 0.97
25 2 0.03
ACGTcount: A:0.18, C:0.19, G:0.34, T:0.29
Consensus pattern (24 bp):
CTGGGCAGTCTCTTGGACCGAATG
Found at i:80424914 original size:48 final size:48
Alignment explanation
Indices: 80424862--80424980 Score: 141
Period size: 48 Copynumber: 2.5 Consensus size: 48
80424852 AAGCAGATTC
* * *
80424862 CTGGGCAGTCTCTTGGACCGCATGCTGGGTAGTCTGTTAGGCTGAATG
1 CTGGGCAGTCTCTTGGACCGAATGCTGGGCAGTCTGTTAGGCCGAATG
* * * *
80424910 CTGGGCAGTCTATT-AAGCCGAATGTTGGGCAGTCTGTTGGGCCGAATG
1 CTGGGCAGTCTCTTGGA-CCGAATGCTGGGCAGTCTGTTAGGCCGAATG
* *
80424958 TTGGGCAGTCTCTTGGACAGAAT
1 CTGGGCAGTCTCTTGGACCGAAT
80424981 AATGGGCTGC
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
47 1 0.02
48 56 0.97
49 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.34, T:0.29
Consensus pattern (48 bp):
CTGGGCAGTCTCTTGGACCGAATGCTGGGCAGTCTGTTAGGCCGAATG
Found at i:80424986 original size:24 final size:24
Alignment explanation
Indices: 80424935--80424987 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
80424925 AGCCGAATGT
* * * **
80424935 TGGGCAGTCTGTTGGGCCGAATGT
1 TGGGCAGTCTCTTGGACAGAATAA
80424959 TGGGCAGTCTCTTGGACAGAATAA
1 TGGGCAGTCTCTTGGACAGAATAA
80424983 TGGGC
1 TGGGC
80424988 TGCATAGTGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.19, C:0.17, G:0.38, T:0.26
Consensus pattern (24 bp):
TGGGCAGTCTCTTGGACAGAATAA
Found at i:80435355 original size:40 final size:40
Alignment explanation
Indices: 80435276--80435452 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
80435266 CGGATGATAA
* * * *
80435276 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
80435316 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
80435356 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
80435396 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
80435436 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
80435453 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.12
40 102 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:80438192 original size:34 final size:34
Alignment explanation
Indices: 80438149--80438216 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
80438139 TACTCATAAC
80438149 CGCTTCTTCTTAAATCAAATAACTTACACTTTAA
1 CGCTTCTTCTTAAATCAAATAACTTACACTTTAA
*
80438183 CGCTTCTTCTTAAATCAATTAACTTACACTTTAA
1 CGCTTCTTCTTAAATCAAATAACTTACACTTTAA
80438217 ATATTGATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.40
Consensus pattern (34 bp):
CGCTTCTTCTTAAATCAAATAACTTACACTTTAA
Found at i:80438998 original size:5 final size:5
Alignment explanation
Indices: 80438988--80439012 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
80438978 AAAATATATA
80438988 AAATT AAATT AAATT AAATT AAATT
1 AAATT AAATT AAATT AAATT AAATT
80439013 TTAATTGAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AAATT
Found at i:80439647 original size:15 final size:15
Alignment explanation
Indices: 80439627--80439658 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
80439617 GAGATTCAGG
80439627 TTAGCATCAAATTAA
1 TTAGCATCAAATTAA
80439642 TTAGCATCAAATTAA
1 TTAGCATCAAATTAA
80439657 TT
1 TT
80439659 TACTCGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (15 bp):
TTAGCATCAAATTAA
Found at i:80454053 original size:107 final size:105
Alignment explanation
Indices: 80453933--80454151 Score: 348
Period size: 107 Copynumber: 2.1 Consensus size: 105
80453923 AGTGTTGTCC
* *
80453933 AAGCTAGACATTTCTATTATGTTTATGTTAAATTAAATGTTGGGATTAAATAAGTGTTTATGTAA
1 AAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAATAAGTGTTTATGTAA
* *
80453998 ATTTTAATGCTGATATTATAGGTGAATAAGTGTATTTTTCCA
66 ATTTTAATGCTGATATTATAGCTAAATAAGTG--TTTTTCCA
* *
80454040 AAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAATAATTGTTTATGTCA
1 AAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAATAAGTGTTTATGTAA
* *
80454105 ATTTTATTGCTGATATTATAGCTAAATAAGTGTTTTTCTA
66 ATTTTAATGCTGATATTATAGCTAAATAAGTGTTTTTCCA
80454145 AAGCTGG
1 AAGCTGG
80454152 TTATATCTAA
Statistics
Matches: 104, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
105 14 0.13
107 90 0.87
ACGTcount: A:0.33, C:0.06, G:0.16, T:0.44
Consensus pattern (105 bp):
AAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAATAAGTGTTTATGTAA
ATTTTAATGCTGATATTATAGCTAAATAAGTGTTTTTCCA
Found at i:80458364 original size:18 final size:18
Alignment explanation
Indices: 80458338--80458440 Score: 59
Period size: 18 Copynumber: 5.4 Consensus size: 18
80458328 TGTTAAATGA
*
80458338 TTAACTTAAATGTTTATG
1 TTAAATTAAATGTTTATG
* *
80458356 TTAAATTAAATGTTAAAG
1 TTAAATTAAATGTTTATG
80458374 TTGAGGACATTTCTATAATGTTTATG
1 TT-A--A-A--T-TA-AATGTTTATG
*
80458400 TTAAATTAAATG-TTAGG
1 TTAAATTAAATGTTTATG
*
80458417 ATTAAA-TAAGTGTTTATG
1 -TTAAATTAAATGTTTATG
80458435 -TAAATT
1 TTAAATT
80458441 TTAATGCTGA
Statistics
Matches: 66, Mismatches: 8, Indels: 23
0.68 0.08 0.24
Matches are distributed among these distances:
16 4 0.06
17 10 0.15
18 30 0.45
19 3 0.05
20 1 0.02
21 1 0.02
22 2 0.03
23 1 0.02
24 1 0.02
25 3 0.05
26 10 0.15
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.45
Consensus pattern (18 bp):
TTAAATTAAATGTTTATG
Found at i:80458565 original size:107 final size:107
Alignment explanation
Indices: 80458379--80458581 Score: 352
Period size: 107 Copynumber: 1.9 Consensus size: 107
80458369 TAAAGTTGAG
80458379 GACATTTCTATAATGTTTATGTTAAATTAAATGTTAGGATTAAATAAGTGTTTATGTAAATTTTA
1 GACATTTCTATAATGTTTATGTTAAATTAAATGTTAGGATTAAATAAGTGTTTATGTAAATTTTA
80458444 ATGCTGATATTATAGGCGAATAAGTGTTTTTTTCCAAAGCTA
66 ATGCTGATATTATAGGCGAATAAGTGTTTTTTTCCAAAGCTA
* * * **
80458486 GACATTTCTATTATGTTTTTGTTAAATTAAATGTTCGGATTAAATAAGTGTTTATGTCGATTTTA
1 GACATTTCTATAATGTTTATGTTAAATTAAATGTTAGGATTAAATAAGTGTTTATGTAAATTTTA
*
80458551 ATGTTGATATTATAGGCGAATAAGTGTTTTT
66 ATGCTGATATTATAGGCGAATAAGTGTTTTT
80458582 CTATAGCTGA
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
107 90 1.00
ACGTcount: A:0.32, C:0.06, G:0.17, T:0.45
Consensus pattern (107 bp):
GACATTTCTATAATGTTTATGTTAAATTAAATGTTAGGATTAAATAAGTGTTTATGTAAATTTTA
ATGCTGATATTATAGGCGAATAAGTGTTTTTTTCCAAAGCTA
Found at i:80459114 original size:71 final size:71
Alignment explanation
Indices: 80458977--80459141 Score: 186
Period size: 71 Copynumber: 2.3 Consensus size: 71
80458967 GAATGAATGA
* * * ** *
80458977 ACACTCATGTTTCAGTTTTACCGACCAGCGTAGGGCGCATTTATTTGTTGGTTATATCAACCAGT
1 ACACTCAT-TTTCAGTTTTACCGACCAGCGCAAGGCACATTTATTTGTCAGTTATACCAACCAGT
80459042 GCTAGAC
65 GCTAGAC
** * **
80459049 ACACTCATTTTTGGTTTTACCGACTAGCGCAAGGCACATTTATTTGTCAGTTATACCAATTAGTG
1 ACACTCATTTTCAGTTTTACCGACCAGCGCAAGGCACATTTATTTGTCAGTTATACCAACCAGTG
* **
80459114 CTTGGT
66 CTAGAC
80459120 ACACTCATTTGTCAGTTTTACC
1 ACACTCATTT-TCAGTTTTACC
80459142 AGCTAGCTCA
Statistics
Matches: 76, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
71 59 0.78
72 17 0.22
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (71 bp):
ACACTCATTTTCAGTTTTACCGACCAGCGCAAGGCACATTTATTTGTCAGTTATACCAACCAGTG
CTAGAC
Found at i:80459561 original size:6 final size:6
Alignment explanation
Indices: 80459550--80459576 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
80459540 TCCAATGATG
80459550 ATTTGA ATTTGA ATTTGA ATTTGA ATT
1 ATTTGA ATTTGA ATTTGA ATTTGA ATT
80459577 AAATGCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (6 bp):
ATTTGA
Found at i:80461034 original size:19 final size:19
Alignment explanation
Indices: 80460973--80461026 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
80460963 TATTATAAGT
*
80460973 TAATAATTGATATATTTTCA
1 TAATAATTAATATA-TTTCA
** *
80460993 TAATTTTTTATATATTTCA
1 TAATAATTAATATATTTCA
80461012 TAATAATTAATATAT
1 TAATAATTAATATAT
80461027 CTTATAATCT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.54
Consensus pattern (19 bp):
TAATAATTAATATATTTCA
Found at i:80461071 original size:18 final size:19
Alignment explanation
Indices: 80461050--80461094 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
80461040 GTATCTCTCT
*
80461050 TATTTTTAGTAT-TTTTCA
1 TATTTTTAGTATATCTTCA
*
80461068 TATTTTTATTATATCTTCA
1 TATTTTTAGTATATCTTCA
80461087 TAATTTTT
1 T-ATTTTT
80461095 TTTTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 11 0.48
19 6 0.26
20 6 0.26
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (19 bp):
TATTTTTAGTATATCTTCA
Found at i:80461103 original size:23 final size:24
Alignment explanation
Indices: 80461070--80461118 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
80461060 ATTTTTCATA
*
80461070 TTTTTATTATATCTTCATAATTTT
1 TTTTTATTATATCTTCAGAATTTT
* *
80461094 TTTTTA-TATATTTTTAGAATTTT
1 TTTTTATTATATCTTCAGAATTTT
80461117 TT
1 TT
80461119 AGTATACACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.69
Consensus pattern (24 bp):
TTTTTATTATATCTTCAGAATTTT
Found at i:80461462 original size:20 final size:19
Alignment explanation
Indices: 80461413--80461488 Score: 75
Period size: 20 Copynumber: 3.9 Consensus size: 19
80461403 TGATAACCTA
80461413 TCATAATTTTTGGTATTAT
1 TCATAATTTTTGGTATTAT
*
80461432 CTC-T-TTTTTTGGTACTTAT
1 -TCATAATTTTTGGTA-TTAT
*
80461451 TCATAATTTTTGGTATTTCAC
1 TCATAATTTTTGGTA-TT-AT
*
80461472 TCATAATTTTTAGTATT
1 TCATAATTTTTGGTATT
80461489 TCCTTGCATT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
18 11 0.23
19 6 0.13
20 15 0.32
21 15 0.32
ACGTcount: A:0.22, C:0.11, G:0.09, T:0.58
Consensus pattern (19 bp):
TCATAATTTTTGGTATTAT
Found at i:80461521 original size:20 final size:20
Alignment explanation
Indices: 80461451--80461528 Score: 63
Period size: 20 Copynumber: 3.9 Consensus size: 20
80461441 TGGTACTTAT
* *
80461451 TCATAATTTTTGGTATTTCA
1 TCATAATTTTTGATATTCCA
*
80461471 CTCATAATTTTT-AGTATTTCCT
1 -TCATAATTTTTGA-TA-TTCCA
80461493 TGCAT--TTTTTGATATTCCA
1 T-CATAATTTTTGATATTCCA
*
80461512 TCATAATTTTTTATATT
1 TCATAATTTTTGATATT
80461529 ACCTCATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
18 3 0.07
19 5 0.11
20 17 0.37
21 15 0.33
22 6 0.13
ACGTcount: A:0.24, C:0.13, G:0.06, T:0.56
Consensus pattern (20 bp):
TCATAATTTTTGATATTCCA
Found at i:80461569 original size:18 final size:18
Alignment explanation
Indices: 80461495--80461569 Score: 51
Period size: 20 Copynumber: 3.8 Consensus size: 18
80461485 TATTTCCTTG
80461495 CATTTTTTGATATTCCATCA
1 CATTTTTTG-TATTCC-TCA
* *
80461515 TAATTTTTTATATTACCTCA
1 -CATTTTTTGTATT-CCTCA
** *
80461535 TTTTTTTTGGTGCTTCCTCA
1 CATTTTTT-GT-ATTCCTCA
80461555 CATTTTTTGTATTCC
1 CATTTTTTGTATTCC
80461570 CTTATAATTT
Statistics
Matches: 42, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
18 4 0.10
19 8 0.19
20 19 0.45
21 11 0.26
ACGTcount: A:0.19, C:0.19, G:0.07, T:0.56
Consensus pattern (18 bp):
CATTTTTTGTATTCCTCA
Found at i:80461918 original size:20 final size:20
Alignment explanation
Indices: 80461893--80461936 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
80461883 TTCCTCAAAT
*
80461893 ATTTTTGATATTCTCTTAGA
1 ATTTTTGATATTCTCTTAAA
* *
80461913 ATTTTTGGTATTTTCTTAAA
1 ATTTTTGATATTCTCTTAAA
80461933 ATTT
1 ATTT
80461937 GTGGTATTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.25, C:0.07, G:0.09, T:0.59
Consensus pattern (20 bp):
ATTTTTGATATTCTCTTAAA
Found at i:80461941 original size:20 final size:20
Alignment explanation
Indices: 80461901--80461945 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
80461891 ATATTTTTGA
* * *
80461901 TATTCTCTTAGAATTTTTGG
1 TATTTTCTTAAAATTTGTGG
80461921 TATTTTCTTAAAATTTGTGG
1 TATTTTCTTAAAATTTGTGG
80461941 TATTT
1 TATTT
80461946 CCTCACATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.22, C:0.07, G:0.13, T:0.58
Consensus pattern (20 bp):
TATTTTCTTAAAATTTGTGG
Found at i:80461958 original size:17 final size:17
Alignment explanation
Indices: 80461936--80461969 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
80461926 TCTTAAAATT
80461936 TGTGGTATTTCCTCACA
1 TGTGGTATTTCCTCACA
80461953 TGTGGTATTTCCTCACA
1 TGTGGTATTTCCTCACA
80461970 GTTTTCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.41
Consensus pattern (17 bp):
TGTGGTATTTCCTCACA
Found at i:80462523 original size:60 final size:58
Alignment explanation
Indices: 80462451--80462678 Score: 208
Period size: 60 Copynumber: 3.8 Consensus size: 58
80462441 TCTCACTATT
* *
80462451 TTTTTTTGTATTCTCTTATAATTTTTTGGTACATCCTCATATTTTTGGTAATTTTTCAGA
1 TTTTTTTATATTCTCTCATAA-TTTTTGGTACATCCTCA-ATTTTTGGTAATTTTTCAGA
* * * * * * ** *
80462511 TTTTCTTATATTCCCTCATAACTTTTAGTACTTCCTCGGAGTTTTTGGT-ATTCCCTCATA
1 TTTTTTTATATTCTCTCATAATTTTTGGTACATCCTC--AATTTTTGGTAATT-TTTCAGA
* ** *
80462571 TTTTTTTGTATTCTCTCATAATTTTTTATACATCCTC-ATTTTTGGTAATTTTGCAGA
1 TTTTTTTATATTCTCTCATAATTTTTGGTACATCCTCAATTTTTGGTAATTTTTCAGA
* * *
80462628 TTTTTTTGATATTCTCTCATAATATTTGGAACTTCCTCAGAATTTTTGGTA
1 TTTTTTT-ATATTCTCTCATAATTTTTGGTACATCCTC--AATTTTTGGTA
80462679 TTCCCTCATT
Statistics
Matches: 131, Mismatches: 29, Indels: 15
0.75 0.17 0.09
Matches are distributed among these distances:
57 18 0.14
58 27 0.21
59 16 0.12
60 59 0.45
61 11 0.08
ACGTcount: A:0.21, C:0.16, G:0.10, T:0.54
Consensus pattern (58 bp):
TTTTTTTATATTCTCTCATAATTTTTGGTACATCCTCAATTTTTGGTAATTTTTCAGA
Found at i:80462578 original size:21 final size:20
Alignment explanation
Indices: 80462519--80462597 Score: 70
Period size: 20 Copynumber: 4.0 Consensus size: 20
80462509 GATTTTCTTA
* *
80462519 TATTCCCTCATAACTTTTAG
1 TATTCCCTCATAATTTTTTG
** * *
80462539 TACTT-CCTCGGAGTTTTTGG
1 TA-TTCCCTCATAATTTTTTG
*
80462559 TATTCCCTCATATTTTTTTG
1 TATTCCCTCATAATTTTTTG
*
80462579 TATTCTCTCATAATTTTTT
1 TATTCCCTCATAATTTTTT
80462598 ATACATCCTC
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
19 2 0.04
20 42 0.91
21 2 0.04
ACGTcount: A:0.18, C:0.20, G:0.09, T:0.53
Consensus pattern (20 bp):
TATTCCCTCATAATTTTTTG
Found at i:80462596 original size:40 final size:40
Alignment explanation
Indices: 80462451--80462596 Score: 95
Period size: 40 Copynumber: 3.6 Consensus size: 40
80462441 TCTCACTATT
* *
80462451 TTTTTTTGTATTCTCTTATAATTTTTTGGTACAT-CCTCATA
1 TTTTTTTGTATTCTCTCATAA-TTTTTGGTA-TTCCCTCATA
* * * **
80462492 -TTTTTGGTAATT-TTTCA-GATTTTCTTATATTCCCTCATA
1 TTTTTTTGT-ATTCTCTCATAATTTT-TGGTATTCCCTCATA
** * ** *
80462531 ACTTTTAGTACTTC-CTCGGAGTTTTTGGTATTCCCTCATA
1 TTTTTTTGTA-TTCTCTCATAATTTTTGGTATTCCCTCATA
80462571 TTTTTTTGTATTCTCTCATAATTTTT
1 TTTTTTTGTATTCTCTCATAATTTTT
80462597 TATACATCCT
Statistics
Matches: 76, Mismatches: 21, Indels: 17
0.67 0.18 0.15
Matches are distributed among these distances:
38 5 0.07
39 15 0.20
40 49 0.64
41 7 0.09
ACGTcount: A:0.18, C:0.16, G:0.09, T:0.56
Consensus pattern (40 bp):
TTTTTTTGTATTCTCTCATAATTTTTGGTATTCCCTCATA
Found at i:80462685 original size:20 final size:20
Alignment explanation
Indices: 80462630--80462686 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 20
80462620 TTTGCAGATT
* * *
80462630 TTTTTGATATTCTCTCATAA
1 TTTTTGGTATTCCCTCAGAA
* *
80462650 TATTTGGAACTT-CCTCAGAA
1 TTTTTGGTA-TTCCCTCAGAA
80462670 TTTTTGGTATTCCCTCA
1 TTTTTGGTATTCCCTCA
80462687 TTTTTTTTTT
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.23, C:0.19, G:0.11, T:0.47
Consensus pattern (20 bp):
TTTTTGGTATTCCCTCAGAA
Found at i:80473324 original size:43 final size:43
Alignment explanation
Indices: 80473257--80473341 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
80473247 AAATTTGATC
80473257 TGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATT
1 TGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATT
* * * * *
80473300 TGAGATTTCGTGTAAGGCCTTGTCTGGGACAGAGGCTTCGAT
1 TGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCCTCGAT
80473342 ATCGAATTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (43 bp):
TGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATT
Found at i:80480444 original size:43 final size:43
Alignment explanation
Indices: 80480356--80480464 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 43
80480346 TGTCAAATTT
* *
80480356 GATTTGAAATATCATGTAAGACCGTGTCTGGGACACAGGCCTC
1 GATTTGAAATATCATGTAAGACCCTATCTGGGACACAGGCCTC
* * * * * *
80480399 GATTTGAGATTTCGTGTAAGACCCTATCTGGGATAGAGGCTTC
1 GATTTGAAATATCATGTAAGACCCTATCTGGGACACAGGCCTC
* *
80480442 GATATCGAATTA-CATGTAAGACC
1 GAT-TTGAAATATCATGTAAGACC
80480465 ACGTCTGAGA
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
43 48 0.92
44 4 0.08
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (43 bp):
GATTTGAAATATCATGTAAGACCCTATCTGGGACACAGGCCTC
Found at i:80482942 original size:22 final size:21
Alignment explanation
Indices: 80482916--80482972 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
80482906 TTGTACTAAC
80482916 AATTCTCTCATAATTTTTTAT
1 AATTCTCTCATAATTTTTTAT
*
80482937 ACATTCTCT--TAATTTTTTGT
1 A-ATTCTCTCATAATTTTTTAT
*
80482957 ATTTC-CTCATAATTTT
1 AATTCTCTCATAATTTT
80482973 GGATATTCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
18 2 0.06
19 3 0.10
20 18 0.58
21 1 0.03
22 7 0.23
ACGTcount: A:0.25, C:0.16, G:0.02, T:0.58
Consensus pattern (21 bp):
AATTCTCTCATAATTTTTTAT
Found at i:80483364 original size:106 final size:106
Alignment explanation
Indices: 80483177--80483389 Score: 399
Period size: 106 Copynumber: 2.0 Consensus size: 106
80483167 TAAATGGAAA
80483177 AATTATTTAGAAGAACCAAAAATTGGTATCCCTCACCATTTTTGTTATCCTCTCATGTTGTTTGT
1 AATTATTTAGAAGAACCAAAAATTGGTATCCCTCACCATTTTTGTTATCCTCTCATGTTGTTTGT
*
80483242 TATTCTCTCATAATTTTTTGTACTTTCAAATATTTTTTCGT
66 TATTCGCTCATAATTTTTTGTACTTTCAAATATTTTTTCGT
*
80483283 AATTATTTAGAAGAACCAAAAATTGGTATCCCTCATCATTTTTGTTATCCTCTCATGTTGTTTGT
1 AATTATTTAGAAGAACCAAAAATTGGTATCCCTCACCATTTTTGTTATCCTCTCATGTTGTTTGT
*
80483348 TATTCGCTCATCATTTTTTGTACTTTCAAATATTTTTTCGT
66 TATTCGCTCATAATTTTTTGTACTTTCAAATATTTTTTCGT
80483389 A
1 A
80483390 TTCCCTCATA
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 104 1.00
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.48
Consensus pattern (106 bp):
AATTATTTAGAAGAACCAAAAATTGGTATCCCTCACCATTTTTGTTATCCTCTCATGTTGTTTGT
TATTCGCTCATAATTTTTTGTACTTTCAAATATTTTTTCGT
Found at i:80483469 original size:20 final size:20
Alignment explanation
Indices: 80483444--80483627 Score: 85
Period size: 20 Copynumber: 9.2 Consensus size: 20
80483434 TATATATATT
*
80483444 TATTTCCTCATAATTTTTTG
1 TATTTCCTCATAATTTTTGG
*
80483464 TATTTCCTCATACTTTTTGG
1 TATTTCCTCATAATTTTTGG
* * *
80483484 TA-TGCATCCATGATTTTTGG
1 TATTTCCT-CATAATTTTTGG
* *
80483504 TATTTCCTTATAATTGTTTTTG
1 TATTTCCTCATAA-T-TTTTGG
* * * *
80483526 CA--CCCTCGTAATTTTTTG
1 TATTTCCTCATAATTTTTGG
* **
80483544 TA-CTCTCTCATGTTTTTTTGG
1 TATTTC-CTCAT-AATTTTTGG
*
80483565 TATTTTCTTC-TATATTTTTGG
1 TA-TTTCCTCATA-ATTTTTGG
*
80483586 T-TTTCCCTCA-AAATTTTGG
1 TATTT-CCTCATAATTTTTGG
* *
80483605 TACTTCCTCATATTTTTTGG
1 TATTTCCTCATAATTTTTGG
80483625 TAT
1 TAT
80483628 ACTGTAATAT
Statistics
Matches: 119, Mismatches: 31, Indels: 28
0.67 0.17 0.16
Matches are distributed among these distances:
18 7 0.06
19 21 0.18
20 60 0.50
21 21 0.18
22 8 0.07
23 2 0.02
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (20 bp):
TATTTCCTCATAATTTTTGG
Found at i:80483621 original size:19 final size:20
Alignment explanation
Indices: 80483576--80483626 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
80483566 ATTTTCTTCT
*
80483576 ATATTTTTGGT-TTTCCCTC
1 ATATTTTTGGTACTTCCCTC
* *
80483595 AAAATTTTGGTACTT-CCTC
1 ATATTTTTGGTACTTCCCTC
80483614 ATATTTTTTGGTA
1 ATA-TTTTTGGTA
80483627 TACTGTAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.53
Consensus pattern (20 bp):
ATATTTTTGGTACTTCCCTC
Found at i:80483658 original size:19 final size:20
Alignment explanation
Indices: 80483599--80483661 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
80483589 TCCCTCAAAA
80483599 TTTTGGTACTT-CCTCATATT
1 TTTTGGTA-TTACCTCATATT
* *
80483619 TTTTGGTA-TACTGTAATATT
1 TTTTGGTATTAC-CTCATATT
80483639 TTTTGGTATTACCTCA-ATT
1 TTTTGGTATTACCTCATATT
80483658 TTTT
1 TTTT
80483662 TTGTATGGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
18 1 0.03
19 8 0.22
20 24 0.67
21 3 0.08
ACGTcount: A:0.19, C:0.13, G:0.11, T:0.57
Consensus pattern (20 bp):
TTTTGGTATTACCTCATATT
Found at i:80483661 original size:21 final size:21
Alignment explanation
Indices: 80483557--80483664 Score: 68
Period size: 20 Copynumber: 5.3 Consensus size: 21
80483547 TCTCTCATGT
* * *
80483557 TTTTTTGGTATTTTCTTCTATA
1 TTTTTTGGTA-TTACCTCAATA
* *
80483579 -TTTTTGGTTTTCCCTCAA-A
1 TTTTTTGGTATTACCTCAATA
*
80483598 -ATTTTGGTACTT-CCTC-ATA
1 TTTTTTGGTA-TTACCTCAATA
*
80483617 TTTTTTGGTA-TA-CTGTAATA
1 TTTTTTGGTATTACCT-CAATA
*
80483637 TTTTTTGGTATTACCTCAATT
1 TTTTTTGGTATTACCTCAATA
80483658 TTTTTTG
1 TTTTTTG
80483665 TATGGTTTTG
Statistics
Matches: 68, Mismatches: 10, Indels: 17
0.72 0.11 0.18
Matches are distributed among these distances:
18 4 0.06
19 13 0.19
20 29 0.43
21 20 0.29
22 2 0.03
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (21 bp):
TTTTTTGGTATTACCTCAATA
Found at i:80484301 original size:20 final size:20
Alignment explanation
Indices: 80484278--80484315 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80484268 ATGAATCTTT
80484278 TTATACCAAAAATTAATTCC
1 TTATACCAAAAATTAATTCC
* *
80484298 TTATGCCAAAACTTAATT
1 TTATACCAAAAATTAATT
80484316 TTGAAAGTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.37
Consensus pattern (20 bp):
TTATACCAAAAATTAATTCC
Found at i:80484506 original size:8 final size:8
Alignment explanation
Indices: 80484493--80484522 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
80484483 ATAAAATTGT
80484493 TTTAATGA
1 TTTAATGA
80484501 TTTAATGA
1 TTTAATGA
*
80484509 TTTAATGT
1 TTTAATGA
80484517 TTTAAT
1 TTTAAT
80484523 TTTTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (8 bp):
TTTAATGA
Found at i:80484528 original size:16 final size:16
Alignment explanation
Indices: 80484487--80484530 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
80484477 TTTTTTATAA
80484487 AATTGTTTTAATGATTT
1 AATT-TTTTAATGATTT
** *
80484504 AATGATTTAATGTTTT
1 AATTTTTTAATGATTT
80484520 AATTTTTTAAT
1 AATTTTTTAAT
80484531 TTATCAATAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (16 bp):
AATTTTTTAATGATTT
Found at i:80486828 original size:23 final size:23
Alignment explanation
Indices: 80486802--80486846 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
80486792 AACTCGAATT
*
80486802 ACTT-ATTCAAGTTAACTTGAAAA
1 ACTTGATTCAA-TTAACTAGAAAA
*
80486825 ACTTGATTCGATTAACTAGAAA
1 ACTTGATTCAATTAACTAGAAA
80486847 TTTAGATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.33
Consensus pattern (23 bp):
ACTTGATTCAATTAACTAGAAAA
Found at i:80488165 original size:21 final size:21
Alignment explanation
Indices: 80488139--80488202 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 21
80488129 AGCACATAAG
80488139 TGAATAGAAACCCATAAAGGT
1 TGAATAGAAACCCATAAAGGT
*
80488160 TGAATAGAAGCCCATAAGAGG-
1 TGAATAGAAACCCATAA-AGGT
*
80488181 TGAAT-GAAAACCCATAAGGGT
1 TGAATAG-AAACCCATAAAGGT
80488202 T
1 T
80488203 AAACAGAAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
20 3 0.08
21 31 0.84
22 3 0.08
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (21 bp):
TGAATAGAAACCCATAAAGGT
Found at i:80488221 original size:42 final size:42
Alignment explanation
Indices: 80488138--80488244 Score: 99
Period size: 42 Copynumber: 2.5 Consensus size: 42
80488128 AAGCACATAA
* * * *
80488138 GTGAAT-AGAAACCCATAAAGGTTGAATAGAAGCCCATAAGAG
1 GTGAATGA-AAACCCATAAGGGTTAAACAGAAGCCCAAAAGAG
**
80488180 GTGAATGAAAACCCATAAGGGTTAAACAGAAGTTCAAAAGAG
1 GTGAATGAAAACCCATAAGGGTTAAACAGAAGCCCAAAAGAG
* * ** *
80488222 CTGAACGGGAACCCATTAGGGTT
1 GTGAATGAAAACCCATAAGGGTT
80488245 GAACGGAAAC
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 52 0.98
43 1 0.02
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.18
Consensus pattern (42 bp):
GTGAATGAAAACCCATAAGGGTTAAACAGAAGCCCAAAAGAG
Found at i:80488298 original size:32 final size:32
Alignment explanation
Indices: 80488257--80488322 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
80488247 ACGGAAACTC
* * *
80488257 ATATGAGTTAAACCGAAGCTCGTGAGTGCTAA
1 ATATGAGTTAAACAGAAACTCGTGAGAGCTAA
*
80488289 ATATGAGTTAAATAGAAACTCGTGAGAGCTAA
1 ATATGAGTTAAACAGAAACTCGTGAGAGCTAA
80488321 AT
1 AT
80488323 GGAAAGTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.26
Consensus pattern (32 bp):
ATATGAGTTAAACAGAAACTCGTGAGAGCTAA
Found at i:80488939 original size:19 final size:19
Alignment explanation
Indices: 80488915--80488968 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 19
80488905 CACGAATTCA
80488915 AACATATTACATTATCATT
1 AACATATTACATTATCATT
80488934 AACATATTACATTATCATT
1 AACATATTACATTATCATT
*
80488953 AATCATTTATACATTA
1 AA-CATAT-TACATTA
80488969 GCAAATATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 21 0.66
20 4 0.12
21 7 0.22
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.43
Consensus pattern (19 bp):
AACATATTACATTATCATT
Found at i:80492887 original size:18 final size:19
Alignment explanation
Indices: 80492861--80492925 Score: 87
Period size: 20 Copynumber: 3.4 Consensus size: 19
80492851 TCTTTAGAAT
*
80492861 TTTTAAATTTTATAAA-TA
1 TTTTAAATTTTAAAAATTA
*
80492879 TTTTGAATTTTAAAAATTA
1 TTTTAAATTTTAAAAATTA
*
80492898 TTTTAAAATTTTGAAAATTA
1 TTTT-AAATTTTAAAAATTA
80492918 TTTTAAAT
1 TTTTAAAT
80492926 ATTTTTGGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
18 14 0.34
19 10 0.24
20 17 0.41
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
TTTTAAATTTTAAAAATTA
Found at i:80495120 original size:46 final size:46
Alignment explanation
Indices: 80495068--80495160 Score: 150
Period size: 46 Copynumber: 2.0 Consensus size: 46
80495058 CGAAGGAAAT
* *
80495068 TAAAACCTAATATAATAGAGAAAATAAGTAAAACCAAAACTCTTAA
1 TAAAACCTAATATAATAAAGAAAATAAATAAAACCAAAACTCTTAA
* *
80495114 TAAAACCTGATATAATAAAGAAAATAAATAAAACTAAAACTCTTAA
1 TAAAACCTAATATAATAAAGAAAATAAATAAAACCAAAACTCTTAA
80495160 T
1 T
80495161 TGCAATTAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.59, C:0.12, G:0.05, T:0.24
Consensus pattern (46 bp):
TAAAACCTAATATAATAAAGAAAATAAATAAAACCAAAACTCTTAA
Found at i:80499827 original size:27 final size:27
Alignment explanation
Indices: 80499797--80499882 Score: 81
Period size: 27 Copynumber: 3.2 Consensus size: 27
80499787 TACCAAGATT
80499797 ATCATCTTACCAAATATCTTCAGCTTA
1 ATCATCTTACCAAATATCTTCAGCTTA
* * * *
80499824 ATCATC-AATCATTCATAT-TTAAAG-TT-
1 ATCATCTTACCA--AATATCTT-CAGCTTA
80499850 ATCATCTTACCAAATATCTTCAGCTTA
1 ATCATCTTACCAAATATCTTCAGCTTA
80499877 ATCATC
1 ATCATC
80499883 AAGCATTCAT
Statistics
Matches: 44, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
25 6 0.14
26 13 0.30
27 19 0.43
28 6 0.14
ACGTcount: A:0.35, C:0.23, G:0.03, T:0.38
Consensus pattern (27 bp):
ATCATCTTACCAAATATCTTCAGCTTA
Found at i:80499867 original size:53 final size:53
Alignment explanation
Indices: 80499795--80499903 Score: 209
Period size: 53 Copynumber: 2.1 Consensus size: 53
80499785 TATACCAAGA
*
80499795 TTATCATCTTACCAAATATCTTCAGCTTAATCATCAATCATTCATATTTAAAG
1 TTATCATCTTACCAAATATCTTCAGCTTAATCATCAAGCATTCATATTTAAAG
80499848 TTATCATCTTACCAAATATCTTCAGCTTAATCATCAAGCATTCATATTTAAAG
1 TTATCATCTTACCAAATATCTTCAGCTTAATCATCAAGCATTCATATTTAAAG
80499901 TTA
1 TTA
80499904 GACCATATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.36, C:0.20, G:0.05, T:0.39
Consensus pattern (53 bp):
TTATCATCTTACCAAATATCTTCAGCTTAATCATCAAGCATTCATATTTAAAG
Found at i:80509890 original size:79 final size:76
Alignment explanation
Indices: 80509760--80509907 Score: 183
Period size: 79 Copynumber: 1.9 Consensus size: 76
80509750 TATTACTAAA
* *
80509760 TTAATTAATATTATTACTACTATCATTATATTTTCTTTTATTTATTAATTTATCATTATCATTCT
1 TTAATTAATATTATTACTACTATAATTATATTTTCTTTTATTTATTAATTTA--ATTATCATTAT
80509825 ATTATTAAATTAG
64 ATTATTAAATTAG
* * * *
80509838 TTAATTTAATGTTATTATTACTATAATTATATTTTC-TTT-TTTATGCTTATTTAATTATTATTA
1 TTAA-TTAATATTATTACTACTATAATTATATTTTCTTTTATTTAT--TAATTTAATTATCATTA
80509901 TATTATT
63 TATTATT
80509908 GTATCCTTGA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
77 20 0.33
78 7 0.11
79 34 0.56
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (76 bp):
TTAATTAATATTATTACTACTATAATTATATTTTCTTTTATTTATTAATTTAATTATCATTATAT
TATTAAATTAG
Found at i:80510015 original size:21 final size:22
Alignment explanation
Indices: 80509991--80510040 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
80509981 TAACTATTAT
80509991 TTATTTTATTT-TATCATTTTA
1 TTATTTTATTTATATCATTTTA
* *
80510012 TTA-TTCATTTATATCTTTTTA
1 TTATTTTATTTATATCATTTTA
*
80510033 TAATTTTA
1 TTATTTTA
80510041 AAACTTTAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 6 0.26
21 14 0.61
22 3 0.13
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (22 bp):
TTATTTTATTTATATCATTTTA
Found at i:80510022 original size:29 final size:28
Alignment explanation
Indices: 80509985--80510040 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
80509975 AATATTTAAC
* *
80509985 TATTATTTAT-TTTATTTTATCATTTTAT
1 TATTATTTATATCT-TTTTATAATTTTAT
80510013 TATTCATTTATATCTTTTTATAATTTTA
1 TATT-ATTTATATCTTTTTATAATTTTA
80510041 AAACTTTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.17
29 18 0.75
30 2 0.08
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (28 bp):
TATTATTTATATCTTTTTATAATTTTAT
Found at i:80511415 original size:47 final size:47
Alignment explanation
Indices: 80511352--80511453 Score: 168
Period size: 47 Copynumber: 2.2 Consensus size: 47
80511342 TGCATGGCCC
* * *
80511352 GAAGCCAAATCGGTTTATCTCCCACTCGAAGTGCTATATCATGGCTT
1 GAAGCCAAATCAGTTTATCTCCCACCCAAAGTGCTATATCATGGCTT
*
80511399 GAAGCCAAATCAGTTTATCTCGCACCCAAAGTGCTATATCATGGCTT
1 GAAGCCAAATCAGTTTATCTCCCACCCAAAGTGCTATATCATGGCTT
80511446 GAAGCCAA
1 GAAGCCAA
80511454 CTCATAGTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (47 bp):
GAAGCCAAATCAGTTTATCTCCCACCCAAAGTGCTATATCATGGCTT
Found at i:80511453 original size:26 final size:26
Alignment explanation
Indices: 80511380--80511453 Score: 61
Period size: 26 Copynumber: 3.0 Consensus size: 26
80511370 CTCCCACTCG
80511380 AAGTGCTATATCATGGCTTGAAGCCA
1 AAGTGCTATATCATGGCTTGAAGCCA
* * * *
80511406 AA-T-C-AGT-TTAT--CTCGCACCCA
1 AAGTGCTA-TATCATGGCTTGAAGCCA
80511427 AAGTGCTATATCATGGCTTGAAGCCA
1 AAGTGCTATATCATGGCTTGAAGCCA
80511453 A
1 A
80511454 CTCATAGTAT
Statistics
Matches: 33, Mismatches: 8, Indels: 14
0.60 0.15 0.25
Matches are distributed among these distances:
21 9 0.27
22 1 0.03
23 6 0.18
24 6 0.18
25 1 0.03
26 10 0.30
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
AAGTGCTATATCATGGCTTGAAGCCA
Found at i:80519401 original size:25 final size:25
Alignment explanation
Indices: 80519372--80519438 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
80519362 TTTTAATATT
* * *
80519372 TGGGGTAAAACCCTTTTTGATAAAC
1 TGGGGCAAAGCCCTTTTCGATAAAC
*
80519397 TGGGGCAAAGCCCTTTTCGGTAAAC
1 TGGGGCAAAGCCCTTTTCGATAAAC
80519422 TGGGGCAAAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
80519439 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (25 bp):
TGGGGCAAAGCCCTTTTCGATAAAC
Found at i:80519784 original size:27 final size:27
Alignment explanation
Indices: 80519643--80519777 Score: 198
Period size: 27 Copynumber: 5.0 Consensus size: 27
80519633 GGGGCAAAAT
* ** *
80519643 GGTAATTTTACCCTACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80519670 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80519697 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80519724 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80519751 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80519778 AATAATTTTG
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:80519799 original size:27 final size:27
Alignment explanation
Indices: 80519769--80520029 Score: 136
Period size: 27 Copynumber: 9.6 Consensus size: 27
80519759 TACCCTACAG
* * *
80519769 GGGTATTTCAATAATTTTGTAAATTGA
1 GGGTATTTCAGTAATTTTGCAAATCGA
*** * * * *
80519796 GGGTAAAACGGTAATTCTGTAAATCGG
1 GGGTATTTCAGTAATTTTGCAAATCGA
* * *
80519823 GGGTACTTT-GGTAATTTTAACAAGTCGA
1 GGGTA-TTTCAGTAATTTT-GCAAATCGA
* *
80519851 GGGTATTTCATTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTGCAAATCGA
*
80519878 GGGTATTTTAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTGCAAATC-GA
** *
80519905 GGGTATTTC-GATAATTTCACAAAT-TA
1 GGGTATTTCAG-TAATTTTGCAAATCGA
** * *
80519931 GGGGTATTTTGGTAATTTTACAAA-CCA
1 -GGGTATTTCAGTAATTTTGCAAATCGA
** * * *
80519958 GGGATATTTTGGTAATTTTGTAAACCAA
1 GGG-TATTTCAGTAATTTTGCAAATCGA
** * * *
80519986 GGGTATTTTGGTAATGTTACAAGTCGA
1 GGGTATTTCAGTAATTTTGCAAATCGA
80520013 GGGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
80520030 CACAAATTAG
Statistics
Matches: 182, Mismatches: 41, Indels: 22
0.74 0.17 0.09
Matches are distributed among these distances:
26 6 0.03
27 153 0.84
28 23 0.13
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTGCAAATCGA
Found at i:80519808 original size:81 final size:81
Alignment explanation
Indices: 80519631--80519813 Score: 188
Period size: 81 Copynumber: 2.3 Consensus size: 81
80519621 TTTAACACCC
* * * *
80519631 TAGGGGCAAAATGGTAATTTTACCCTACAAAGGTATCTCGGTAATTCTATCCTACAGGGGTATTT
1 TAGGGGTAAAACGGTAATTCTACCCTACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTT
* **
80519696 CAGTAATTCTACCCTA
66 CAATAATTCTACCAAA
*** * ** *
80519712 TAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
1 TAGGGGTAAAACGGTAATTCTACCCTACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTT
***
80519777 CAATAATT-TTGTAAA
66 CAATAATTCTACCAAA
*
80519792 TTGAGGGTAAAACGGTAATTCT
1 TAG-GGGTAAAACGGTAATTCT
80519814 GTAAATCGGG
Statistics
Matches: 80, Mismatches: 21, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
80 4 0.05
81 76 0.95
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.34
Consensus pattern (81 bp):
TAGGGGTAAAACGGTAATTCTACCCTACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTT
CAATAATTCTACCAAA
Found at i:80519865 original size:28 final size:27
Alignment explanation
Indices: 80519816--80520083 Score: 163
Period size: 27 Copynumber: 9.9 Consensus size: 27
80519806 GTAATTCTGT
* *
80519816 AAATCGGGGGTACTTT-GGTAATTTTAAC
1 AAATCGAGGGTA-TTTCAGTAATTTT-AC
* *
80519844 AAGTCGAGGGTATTTCATTAATTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
80519871 AAATCGAGGGTATTTTAGTAATTTTGC
1 AAATCGAGGGTATTTCAGTAATTTTAC
*
80519898 AAA-CTGAGGGTATTTC-GATAATTTCAC
1 AAATC-GAGGGTATTTCAG-TAATTTTAC
* **
80519925 AAAT-TAGGGGTATTTTGGTAATTTTAC
1 AAATCGA-GGGTATTTCAGTAATTTTAC
* ** **
80519952 AAA-CCAGGGATATTTTGGTAATTTTGT
1 AAATCGAGGG-TATTTCAGTAATTTTAC
* * ** *
80519979 AAACCAAGGGTATTTTGGTAATGTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
80520006 AAGTCGAGGGTATTTCAGTAATTTCAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* ** *
80520033 AAAT-TAGGGGTATTTTGGTAACTTTAC
1 AAATCGA-GGGTATTTCAGTAATTTTAC
* *
80520060 AAA-CCAGGGGTATTTTAGTAATTT
1 AAATCGA-GGGTATTTCAGTAATTT
80520084 GGTAAACTAA
Statistics
Matches: 192, Mismatches: 37, Indels: 23
0.76 0.15 0.09
Matches are distributed among these distances:
26 7 0.04
27 162 0.84
28 23 0.12
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.38
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:80519927 original size:54 final size:54
Alignment explanation
Indices: 80519822--80520083 Score: 230
Period size: 54 Copynumber: 4.8 Consensus size: 54
80519812 CTGTAAATCG
* * * * *
80519822 GGGGTACTTTGGTAATTTTA-ACAAGTCGAGGGTATTTCATTAATTTTACAAA-TC
1 GGGGTATTTTGGTAATTTTACA-AACT-GAGGGTATTTCAGTAATTTCACAAATTA
* *
80519876 GAGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTC-GATAATTTCACAAATTA
1 G-GGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCAG-TAATTTCACAAATTA
* ** *** **
80519931 GGGGTATTTTGGTAATTTTACAAAC-CAGGGATATTTTGGTAATTTTGTAAACCA
1 GGGGTATTTTGGTAATTTTACAAACTGAGGG-TATTTCAGTAATTTCACAAATTA
* * *
80519985 AGGGTATTTTGGTAATGTTAC-AAGTCGAGGGTATTTCAGTAATTTCACAAATTA
1 GGGGTATTTTGGTAATTTTACAAACT-GAGGGTATTTCAGTAATTTCACAAATTA
* * *
80520039 GGGGTATTTTGGTAACTTTACAAAC-CAGGGGTATTTTAGTAATTT
1 GGGGTATTTTGGTAATTTTACAAACTGA-GGGTATTTCAGTAATTT
80520084 GGTAAACTAA
Statistics
Matches: 165, Mismatches: 33, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
53 7 0.04
54 129 0.78
55 28 0.17
56 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (54 bp):
GGGGTATTTTGGTAATTTTACAAACTGAGGGTATTTCAGTAATTTCACAAATTA
Found at i:80520015 original size:108 final size:108
Alignment explanation
Indices: 80519877--80520090 Score: 324
Period size: 108 Copynumber: 2.0 Consensus size: 108
80519867 TTACAAATCG
* *
80519877 AGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTC-GATAATTTCACAAATTAGGGGTATTTT
1 AGGGTATTTTAGTAATGTTACAAACTGAGGGTATTTCAG-TAATTTCACAAATTAGGGGTATTTT
* * *
80519941 GGTAATTTTACAAACCAGGGATATTTTGGTAATTTTGTAAACCA
65 GGTAACTTTACAAACCAGGGATATTTTAGTAATTTGGTAAACCA
* *
80519985 AGGGTATTTTGGTAATGTTAC-AAGTCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTT
1 AGGGTATTTTAGTAATGTTACAAACT-GAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTT
*
80520049 GGTAACTTTACAAACCAGGGGTATTTTAGTAATTTGGTAAAC
65 GGTAACTTTACAAACCAGGGATATTTTAGTAATTTGGTAAAC
80520091 TAAAGTATTC
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.03
108 92 0.96
109 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (108 bp):
AGGGTATTTTAGTAATGTTACAAACTGAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTG
GTAACTTTACAAACCAGGGATATTTTAGTAATTTGGTAAACCA
Found at i:80520017 original size:81 final size:80
Alignment explanation
Indices: 80519823--80520083 Score: 265
Period size: 81 Copynumber: 3.2 Consensus size: 80
80519813 TGTAAATCGG
* * * *
80519823 GGGTACTTTGGTAATTTTAACAAGTCGAGGGTATTTCATTAATTTTACAAATCGAGGGTATTTTA
1 GGGTATTTTGGTAA-TTTAACAAGTCGAGGGTATTTCAGTAATTTTACAAA-CCAGGGTATTTTG
**
80519888 GTAATTTTGCAAACTGA
64 GTAATTTTGCAAACCAA
* * * * * **
80519905 GGGTATTTCGATAATTTCACAAAT-TAGGGGTATTTTGGTAATTTTACAAACCAGGGATATTTTG
1 GGGTATTTTGGTAATTTAACAAGTCGA-GGGTATTTCAGTAATTTTACAAACCAGGG-TATTTTG
*
80519969 GTAATTTTGTAAACCAA
64 GTAATTTTGCAAACCAA
* **
80519986 GGGTATTTTGGTAATGTT-ACAAGTCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTG
1 GGGTATTTTGGTAAT-TTAACAAGTCGAGGGTATTTCAGTAATTTTACAAACCA-GGGTATTTTG
* * *
80520050 GTAACTTTACAAACCAG
64 GTAATTTTGCAAACCAA
*
80520067 GGGTATTTTAGTAATTT
1 GGGTATTTTGGTAATTT
80520084 GGTAAACTAA
Statistics
Matches: 146, Mismatches: 28, Indels: 12
0.78 0.15 0.06
Matches are distributed among these distances:
80 8 0.05
81 121 0.83
82 17 0.12
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTAACAAGTCGAGGGTATTTCAGTAATTTTACAAACCAGGGTATTTTGGT
AATTTTGCAAACCAA
Found at i:80522137 original size:30 final size:30
Alignment explanation
Indices: 80522103--80522199 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
80522093 AGCTCACTCC
80522103 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
80522133 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
80522163 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
80522193 TAGCTCA
1 TAGCTCA
80522200 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:80528165 original size:22 final size:21
Alignment explanation
Indices: 80528137--80528179 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 21
80528127 ACTCTCAACA
80528137 TAGCCTGGGACAGAGCGTCGT
1 TAGCCTGGGACAGAGCGTCGT
80528158 NTAGCCTGGGACAGAGCGTCGT
1 -TAGCCTGGGACAGAGCGTCGT
80528180 CCCTTGCGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.19, C:0.23, G:0.37, T:0.19
Consensus pattern (21 bp):
TAGCCTGGGACAGAGCGTCGT
Found at i:80532289 original size:40 final size:40
Alignment explanation
Indices: 80532194--80532363 Score: 170
Period size: 40 Copynumber: 4.3 Consensus size: 40
80532184 ACCACCAGGC
* * * * *
80532194 TAAGTCCCGAAGGCATCTGCGCTAGTGACTAGT-TCCGAG-
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGT
* *
80532233 CAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGT
* *
80532273 TAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGT
* *
80532313 TATGTCCCGAAGGCA-TTGTGCAAG-TAGCTATATCC-GGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGT
* *
80532351 TAAATCTCGAAGG
1 TAAGTCCCGAAGG
80532364 TACTTGGCTT
Statistics
Matches: 110, Mismatches: 18, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
38 14 0.13
39 46 0.42
40 50 0.45
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGT
Found at i:80532332 original size:79 final size:78
Alignment explanation
Indices: 80532194--80532363 Score: 186
Period size: 79 Copynumber: 2.2 Consensus size: 78
80532184 ACCACCAGGC
* *
80532194 TAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTTCCGAGCAAGTCCCGAAGGCATTTGTGCGAGT
1 TAAGTCCCGAAGGCATCTGCGCGAGTGACTAGTTCCGAGCAAGTCCCGAAGGCATTTGTGCAAG-
80532259 TA-CTAAATCCGGGT
65 TAGCTAAATCC-GGT
* * * *
80532273 TAAGTCCCGAAGGCAT-TGGTGCGAGTTACTA-TATCCGGGCTATGTCCCGAAGGCA-TTGTGCA
1 TAAGTCCCGAAGGCATCT-GCGCGAGTGACTAGT-TCCGAGC-AAGTCCCGAAGGCATTTGTGCA
*
80532335 AGTAGCTATATCCGGT
63 AGTAGCTAAATCCGGT
* *
80532351 TAAATCTCGAAGG
1 TAAGTCCCGAAGG
80532364 TACTTGGCTT
Statistics
Matches: 78, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
78 18 0.23
79 47 0.60
80 13 0.17
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATCTGCGCGAGTGACTAGTTCCGAGCAAGTCCCGAAGGCATTTGTGCAAGT
AGCTAAATCCGGT
Found at i:80548148 original size:39 final size:40
Alignment explanation
Indices: 80548053--80548275 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
80548043 TTGAATGATG
*
80548053 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
80548091 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
80548132 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
80548171 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
80548210 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
80548249 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
80548276 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:80548239 original size:79 final size:81
Alignment explanation
Indices: 80548053--80548275 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
80548043 TTGAATGATG
* * *
80548053 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
80548114 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
80548132 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
80548194 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
80548210 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
80548274 TG
66 TG
80548276 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:80548297 original size:79 final size:79
Alignment explanation
Indices: 80548053--80548308 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
80548043 TTGAATGATG
* * * *
80548053 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
80548114 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
80548132 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
80548196 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
80548210 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
80548274 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
80548290 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
80548309 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:80552128 original size:20 final size:19
Alignment explanation
Indices: 80552084--80552130 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
80552074 TCAACCACTC
80552084 CATTTACTTACTTACCATT
1 CATTTACTTACTTACCATT
*
80552103 CAATTTACTTACTTTCCATTT
1 C-ATTTACTTACTTACCA-TT
80552124 CATTTAC
1 CATTTAC
80552131 CTAGCATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.49
Consensus pattern (19 bp):
CATTTACTTACTTACCATT
Found at i:80561972 original size:30 final size:32
Alignment explanation
Indices: 80561911--80561975 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 32
80561901 TTCAATCTCA
*
80561911 ACATATACTAGGCCGAAGCCTCTTCATAATTC
1 ACATATACTAGGCCGAAGCATCTTCATAATTC
* *
80561943 ACAT-TACTGGGCCGAAGCAT-TTTATAATTC
1 ACATATACTAGGCCGAAGCATCTTCATAATTC
80561973 ACA
1 ACA
80561976 ACTCATATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 12 0.40
31 14 0.47
32 4 0.13
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (32 bp):
ACATATACTAGGCCGAAGCATCTTCATAATTC
Found at i:80562290 original size:25 final size:25
Alignment explanation
Indices: 80562225--80562290 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 25
80562215 TTTTAATAAT
* *
80562225 TGGGGCAAAACCCTTTTTGATAAAC
1 TGGGGCAAAGCCCTTTTCGATAAAC
* *
80562250 T-GGGCAAAGCCTTTTTCGGTAAAC
1 TGGGGCAAAGCCCTTTTCGATAAAC
*
80562274 TGGGGTAAAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
80562291 GCACTTCCTC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 20 0.59
25 14 0.41
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (25 bp):
TGGGGCAAAGCCCTTTTCGATAAAC
Found at i:80562363 original size:20 final size:21
Alignment explanation
Indices: 80562338--80562385 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
80562328 AAATGAATAC
*
80562338 ATCATGTGCATATCATA-CAT
1 ATCATGTGCATATCATATCAA
80562358 ATCATGTGCATATCATATCAA
1 ATCATGTGCATATCATATCAA
80562379 ATCATGT
1 ATCATGT
80562386 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.35
Consensus pattern (21 bp):
ATCATGTGCATATCATATCAA
Found at i:80570995 original size:10 final size:10
Alignment explanation
Indices: 80570976--80571007 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
80570966 CGGTCATGTG
80570976 AATA-TTTAC
1 AATATTTTAC
80570985 AATATTTTAC
1 AATATTTTAC
80570995 AATATTTTAC
1 AATATTTTAC
80571005 AAT
1 AAT
80571008 TAGGTCCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (10 bp):
AATATTTTAC
Found at i:80573211 original size:9 final size:9
Alignment explanation
Indices: 80573176--80573258 Score: 62
Period size: 10 Copynumber: 8.8 Consensus size: 9
80573166 ATTAAATTTT
80573176 TAAAAATT-
1 TAAAAATTA
80573184 TAAAAATTCCA
1 TAAAAATT--A
80573195 -ACAAAATTA
1 TA-AAAATTA
80573204 TAAAAATTA
1 TAAAAATTA
*
80573213 TTAAGAATTA
1 -TAAAAATTA
*
80573223 TTAAAAAGTA
1 -TAAAAATTA
**
80573233 TAAAAAAAA
1 TAAAAATTA
80573242 TAAAAATATA
1 TAAAAAT-TA
80573252 TAAAAAT
1 TAAAAAT
80573259 ATTTTGTAGT
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
8 8 0.13
9 21 0.34
10 26 0.43
11 6 0.10
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (9 bp):
TAAAAATTA
Found at i:80576352 original size:15 final size:15
Alignment explanation
Indices: 80576332--80576400 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
80576322 GTATCTTGGG
80576332 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
80576347 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
80576362 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
80576377 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
80576392 TTTCTTTAT
1 TTTCTTTAT
80576401 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:80576401 original size:30 final size:30
Alignment explanation
Indices: 80576323--80576410 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
80576313 CATAGTATCG
* * * *
80576323 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
80576353 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
80576383 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
80576411 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:80578852 original size:46 final size:45
Alignment explanation
Indices: 80578802--80578977 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
80578792 TGGTTGAGCA
80578802 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
80578848 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
80578895 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
80578941 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80578978 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:80578958 original size:93 final size:93
Alignment explanation
Indices: 80578799--80578969 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
80578789 GGATGGTTGA
* *
80578799 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80578864 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
80578892 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80578957 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
80578970 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:80582175 original size:31 final size:31
Alignment explanation
Indices: 80582140--80582242 Score: 82
Period size: 31 Copynumber: 3.3 Consensus size: 31
80582130 AGCTACATTT
80582140 ATCCCGTAGCTCTCTTGTCTACATGGTATAC
1 ATCCCGTAGCTCTCTTGTCTACATGGTATAC
* * * * * * * * **
80582171 ATCCCATATCACACATGT-GACCTAGCTACATTT
1 ATCCCGTAGCTCTCTTGTCTACAT-GGT--ATAC
80582204 ATCCCGTAGCTCTCTTGTCTACATGGTATAC
1 ATCCCGTAGCTCTCTTGTCTACATGGTATAC
80582235 ATCCCGTA
1 ATCCCGTA
80582243 TCACACATGT
Statistics
Matches: 48, Mismatches: 20, Indels: 8
0.63 0.26 0.11
Matches are distributed among these distances:
30 3 0.06
31 25 0.52
33 17 0.35
34 3 0.06
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.33
Consensus pattern (31 bp):
ATCCCGTAGCTCTCTTGTCTACATGGTATAC
Found at i:80582208 original size:64 final size:63
Alignment explanation
Indices: 80582054--80582289 Score: 305
Period size: 64 Copynumber: 3.6 Consensus size: 63
80582044 TAGTACCACC
* * * * *
80582054 CATGTGACCTAGC--CATTTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACC
1 CATGTGACCTAGCTACA-TTTATCCCGTAGCTCTCTTGTCTACATGGTATACATC-CCT---ATC
80582117 ACA
61 ACA
80582120 CATGTGACCTAGCTACATTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCCCATATCACA
1 CATGTGACCTAGCTACATTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCCC-TATCACA
80582184 CATGTGACCTAGCTACATTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCCCGTATCACA
1 CATGTGACCTAGCTACATTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCCC-TATCACA
*
80582248 CATGTGACCTAGCTACCATATAGTATCTCGTAGCTCTCTTGT
1 CATGTGACCTAGCTA-CAT-T--TATCCCGTAGCTCTCTTGT
80582290 ACACATGATG
Statistics
Matches: 156, Mismatches: 7, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
64 83 0.53
65 3 0.02
66 16 0.10
67 34 0.22
68 20 0.13
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.33
Consensus pattern (63 bp):
CATGTGACCTAGCTACATTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCCCTATCACA
Found at i:80582319 original size:132 final size:129
Alignment explanation
Indices: 80582048--80582333 Score: 305
Period size: 132 Copynumber: 2.2 Consensus size: 129
80582038 AACACTTAGT
* * * * *
80582048 ACCACCCATGTGACCTAGC--CATTTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACCT
1 ACCACACATGTGACCTAGCTACA-TTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCACC-
*
80582111 GGAACCACACATGTGACCTAGCTACATTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCCC
64 GGAACCACACATGTGACCTAGCTACATTTATCCCGTAGCTCTCTTGTCTACATGGTACACATCCC
80582176 A
129 A
*
80582177 TATCACACATGTGACCTAGCTACATTTATCCCGTAGCTCTCTTGTCTACATGGTATACATC-CC-
1 -ACCACACATGTGACCTAGCTACATTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCACCG
* * * *
80582240 GTATCACACATGTGACCTAGCTACCATATAGTATCTCGTAGCTCTCTTGTAC-ACATGATGTGCA
65 GAACCACACATGTGACCTAGCTA-CAT-T--TATCCCGTAGCTCTCTTGT-CTACATG--GTACA
* **
80582304 CTTGGC-
123 CATCCCA
*
80582310 ACCATACATGTGACCTAGCTACAT
1 ACCACACATGTGACCTAGCTACAT
80582334 ACCATCTATA
Statistics
Matches: 131, Mismatches: 16, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
128 21 0.16
129 3 0.02
130 20 0.15
131 33 0.25
132 47 0.36
133 1 0.01
134 6 0.05
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (129 bp):
ACCACACATGTGACCTAGCTACATTTATCCCGTAGCTCTCTTGTCTACATGGTATACATCACCGG
AACCACACATGTGACCTAGCTACATTTATCCCGTAGCTCTCTTGTCTACATGGTACACATCCCA
Found at i:80584085 original size:17 final size:19
Alignment explanation
Indices: 80584063--80584111 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
80584053 CTACAAGATA
80584063 AATATTAAATTAT-A-TTT
1 AATATTAAATTATCACTTT
*
80584080 AATATTAAGATAATCACTTT
1 AATATTAA-ATTATCACTTT
80584100 AATATTAAATTA
1 AATATTAAATTA
80584112 ATAAAATACT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 8 0.30
18 4 0.15
19 4 0.15
20 11 0.41
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (19 bp):
AATATTAAATTATCACTTT
Found at i:80584112 original size:25 final size:26
Alignment explanation
Indices: 80584078--80584129 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
80584068 TAAATTATAT
*
80584078 TTAATATTAAGATAATCACT-TTAATA
1 TTAATATTAAGAAAAT-ACTATTAATA
*
80584104 TTAA-ATTAATAAAATACTATTAATA
1 TTAATATTAAGAAAATACTATTAATA
80584129 T
1 T
80584130 AGGTATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 3 0.13
25 16 0.70
26 4 0.17
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (26 bp):
TTAATATTAAGAAAATACTATTAATA
Found at i:80585345 original size:46 final size:46
Alignment explanation
Indices: 80585276--80585442 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 46
80585266 TGTAACCCGC
* *
80585276 CCATAAGTGAACTCGGACACAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* * *
80585322 CCATAAGTGGACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * * * * *
80585372 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
80585415 CCATAAGTGAACTCGGACTCAACTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
80585443 AAGTTCGGAT
Statistics
Matches: 97, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 2 0.02
46 54 0.56
47 26 0.27
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:80585392 original size:93 final size:93
Alignment explanation
Indices: 80585284--80585455 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
80585274 GCCCATAAGT
* * * *
80585284 GAACTCGGACACAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTGGACTCGGACTCAACTCAA
1 GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
80585349 CGAGCTCGGATGCCTAGTTACATTTCAC
66 CAAGCTCGGATGCCTAGTTACATTTCAC
* *
80585377 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
80585442 CAAGTTCGGATGCC
66 CAAGCTCGGATGCC
80585456 CAAATATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATTTCAC
Found at i:80596944 original size:46 final size:46
Alignment explanation
Indices: 80596843--80596931 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
80596833 TGTAACCCGC
* ** *
80596843 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCACAT
*
80596889 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA
80596932 AACATCCTAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCACAT
Found at i:80601595 original size:50 final size:50
Alignment explanation
Indices: 80601541--80601766 Score: 242
Period size: 50 Copynumber: 4.5 Consensus size: 50
80601531 GCCAATTATA
80601541 CAAGATCAAATATAATATCACATATGAGCTTACCTATATGGCCGAATATG
1 CAAGATCAAATATAATATCACATATGAGCTTACCTATATGGCCGAATATG
* * * *
80601591 CAAGATCAAATTTAATATCACATATGTGCTTACCAATATGGCTGAATATG
1 CAAGATCAAATATAATATCACATATGAGCTTACCTATATGGCCGAATATG
* * * * * *
80601641 CAAGATCAAATTTAACATCATATATGTA-CTTACTTATATGGCCGGATATA
1 CAAGATCAAATATAATATCACATATG-AGCTTACCTATATGGCCGAATATG
* * * * *
80601691 CAA-ATTCAAATATAATATCACATTTGTGCATACCT-TCATGGCCGAATTTT
1 CAAGA-TCAAATATAATATCACATATGAGCTTACCTAT-ATGGCCGAATATG
* * *
80601741 CAAGATCCAATACAACATCACATATG
1 CAAGATCAAATATAATATCACATATG
80601767 TACATGTAAC
Statistics
Matches: 145, Mismatches: 26, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
49 2 0.01
50 142 0.98
51 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (50 bp):
CAAGATCAAATATAATATCACATATGAGCTTACCTATATGGCCGAATATG
Found at i:80601719 original size:100 final size:100
Alignment explanation
Indices: 80601541--80601769 Score: 275
Period size: 100 Copynumber: 2.3 Consensus size: 100
80601531 GCCAATTATA
* * *
80601541 CAAGATCAAATATAATATCACATATG-AGCTTACCTATATGGCCGAATATGCAAGATCAAATTTA
1 CAAGATCAAATATAACATCACATATGTA-CTTACCTATATGGCCGAATATACAAGATCAAATATA
* *
80601605 ATATCACATATGTGCTTACCAAT-ATGGCTGAATATG
65 ATATCACATATGTGCATACC-ATCATGGCCGAATATG
* * * *
80601641 CAAGATCAAATTTAACATCATATATGTACTTACTTATATGGCCGGATATACAA-ATTCAAATATA
1 CAAGATCAAATATAACATCACATATGTACTTACCTATATGGCCGAATATACAAGA-TCAAATATA
* * * *
80601705 ATATCACATTTGTGCATACCTTCATGGCCGAATTTT
65 ATATCACATATGTGCATACCATCATGGCCGAATATG
* *
80601741 CAAGATCCAATACAACATCACATATGTAC
1 CAAGATCAAATATAACATCACATATGTAC
80601770 ATGTAACGCC
Statistics
Matches: 109, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
99 2 0.02
100 106 0.97
101 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (100 bp):
CAAGATCAAATATAACATCACATATGTACTTACCTATATGGCCGAATATACAAGATCAAATATAA
TATCACATATGTGCATACCATCATGGCCGAATATG
Found at i:80602392 original size:28 final size:29
Alignment explanation
Indices: 80602352--80602412 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 29
80602342 AGTTGTGCCG
* *
80602352 TTTTTCTGACCATC-CTTCCTCCTCTTTT
1 TTTTTCTCACCATCACTTCCTCCTCTTCT
* *
80602380 TTTTTCTCTCCATCTACTTTCTCCTCTTCT
1 TTTTTCTCACCATC-ACTTCCTCCTCTTCT
80602410 TTT
1 TTT
80602413 CTCCATAGCC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 12 0.44
30 15 0.56
ACGTcount: A:0.07, C:0.34, G:0.02, T:0.57
Consensus pattern (29 bp):
TTTTTCTCACCATCACTTCCTCCTCTTCT
Found at i:80603707 original size:54 final size:53
Alignment explanation
Indices: 80603624--80603729 Score: 149
Period size: 54 Copynumber: 2.0 Consensus size: 53
80603614 GGAAACGTCC
* * *
80603624 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTT
1 TGGTGGCTATACCACAATTATCTGATCTGGTGACTCTACCACAT-TATCTGTTT
* * *
80603678 TGGTGGCTCTACCACAATTATCTGTTCTGGTGACTCTATCACATTATCTGTT
1 TGGTGGCTATACCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTT
80603730 CTAGTAGCCA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 8 0.17
54 38 0.83
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.39
Consensus pattern (53 bp):
TGGTGGCTATACCACAATTATCTGATCTGGTGACTCTACCACATTATCTGTTT
Found at i:80603730 original size:26 final size:26
Alignment explanation
Indices: 80603623--80603731 Score: 128
Period size: 27 Copynumber: 4.1 Consensus size: 26
80603613 AGGAAACGTC
* * *
80603623 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTACCAC-ATTATCTGTT
*
80603650 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTACCACAT-TATCTGTT
*
80603677 TTGGTGGCTCTACCACAATTATCTGTT
1 CTGGTGGCTCTACCAC-ATTATCTGTT
* *
80603704 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTACCACATTATCTGTT
80603730 CT
1 CT
80603732 AGTAGCCATG
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 14 0.19
27 57 0.78
28 2 0.03
ACGTcount: A:0.18, C:0.24, G:0.19, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTACCACATTATCTGTT
Found at i:80606080 original size:14 final size:15
Alignment explanation
Indices: 80606061--80606089 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
80606051 AAACAAGATT
80606061 TTCACACAC-ATAAA
1 TTCACACACAATAAA
80606075 TTCACACACAATAAA
1 TTCACACACAATAAA
80606090 CACAATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.21
Consensus pattern (15 bp):
TTCACACACAATAAA
Found at i:80608773 original size:50 final size:51
Alignment explanation
Indices: 80608656--80608791 Score: 190
Period size: 50 Copynumber: 2.7 Consensus size: 51
80608646 CTGGTACGCA
* **
80608656 TAGTAGCCTGCACTTAGTACTACAC-CTGCGA-C-CAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACAC-GCGACCTCACCAGTCTAATACACG
*
80608705 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTCACCAGTCTAATACACG
*
80608755 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTCAC
80608792 AATAGATCAT
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
49 28 0.36
50 46 0.59
51 4 0.05
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTCACCAGTCTAATACACG
Found at i:80615178 original size:50 final size:50
Alignment explanation
Indices: 80615091--80615356 Score: 272
Period size: 50 Copynumber: 5.3 Consensus size: 50
80615081 ATCTCTTATT
*
80615091 TGGCC-AATTATACAAGATCAAATATAATATCAAATATGAGCTTACCTATA
1 TGGCCGAA-TATACAAGATCAAATATAATATCACATATGAGCTTACCTATA
* * * *
80615141 TGGCTGAATATGCAAGATCAAATTTAATATCACATATGTGCTTACCTATA
1 TGGCCGAATATACAAGATCAAATATAATATCACATATGAGCTTACCTATA
* * * * *
80615191 TGGTCGAATATGCAAGATCAAATTTAACATCACATATGTA-CTTACTTATA
1 TGGCCGAATATACAAGATCAAATATAATATCACATATG-AGCTTACCTATA
* * * *
80615241 TGGCAGAATATACAA-ATTCAAATATAATATCACATTTGTGCATACCT-TCA
1 TGGCCGAATATACAAGA-TCAAATATAATATCACATATGAGCTTACCTAT-A
* * * * * *
80615291 TGGCCGAATATTCAAGATCCAATACAACATCACATATGTA-CATACCTATG
1 TGGCCGAATATACAAGATCAAATATAATATCACATATG-AGCTTACCTATA
80615341 TGGCCGAATATACAAG
1 TGGCCGAATATACAAG
80615357 GTCATTTAGC
Statistics
Matches: 180, Mismatches: 28, Indels: 16
0.80 0.12 0.07
Matches are distributed among these distances:
49 2 0.01
50 174 0.97
51 4 0.02
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.30
Consensus pattern (50 bp):
TGGCCGAATATACAAGATCAAATATAATATCACATATGAGCTTACCTATA
Found at i:80615281 original size:100 final size:100
Alignment explanation
Indices: 80615103--80615356 Score: 316
Period size: 100 Copynumber: 2.5 Consensus size: 100
80615093 GCCAATTATA
* * * * *
80615103 CAAGATCAAATATAATATCAAATATG-AGCTTACCTATATGGCTGAATATGCAAGATCAAATTTA
1 CAAGATCAAATATAACATCACATATGTA-CTTACCTATATGGCAGAATATACAAGATCAAATATA
* *
80615167 ATATCACATATGTGCTTACCTAT-ATGGTCGAATATG
65 ATATCACATATGTGCATACCT-TCATGGCCGAATATG
* *
80615203 CAAGATCAAATTTAACATCACATATGTACTTACTTATATGGCAGAATATACAA-ATTCAAATATA
1 CAAGATCAAATATAACATCACATATGTACTTACCTATATGGCAGAATATACAAGA-TCAAATATA
* *
80615267 ATATCACATTTGTGCATACCTTCATGGCCGAATATT
65 ATATCACATATGTGCATACCTTCATGGCCGAATATG
* * * * *
80615303 CAAGATCCAATACAACATCACATATGTACATACCTATGTGGCCGAATATACAAG
1 CAAGATCAAATATAACATCACATATGTACTTACCTATATGGCAGAATATACAAG
80615357 GTCATTTAGC
Statistics
Matches: 132, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
99 2 0.02
100 129 0.98
101 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.30
Consensus pattern (100 bp):
CAAGATCAAATATAACATCACATATGTACTTACCTATATGGCAGAATATACAAGATCAAATATAA
TATCACATATGTGCATACCTTCATGGCCGAATATG
Found at i:80636447 original size:48 final size:48
Alignment explanation
Indices: 80636392--80636715 Score: 231
Period size: 48 Copynumber: 6.8 Consensus size: 48
80636382 CAGCCACATT
* *
80636392 ATGAGTGCCAATGTAGGACCATGTCTGGGACATGGCATCGATGTAGAG
1 ATGAGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGATGTAGAG
*
80636440 ATGAGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGAG
1 ATGAGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGATGTAGAG
* *** *
80636488 ATGAGTGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGATG
1 ATGAGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGATGTAGA-G
* * * *
80636535 ATGA-TAGCCAGTGTAAGA-CGTGTCTGGGACA-CGTATCGA-CTA-AG
1 ATGAGT-GCCAGTGTAAGACCATGTCTGGGACATGGCATCGATGTAGAG
* * * * * * *
80636579 A-GTTGTGCTAGTGTAAGA-TATGTCTAGGACAT-GCATCAGCACGTATAT
1 ATG-AGTGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ATGTAGAG
* * * * * ** *
80636627 ACGAGAGCTAGTATAAGACCATGTCTAGGACATGGCATCCG-CCTCGATG
1 ATGAGTGCCAGTGTAAGACCATGTCTGGGACATGGCAT-CGATGTAGA-G
* *
80636676 ATG-CTAGCCAGTGTAAGACAATGTCTGGGACATGGCATCG
1 ATGAGT-GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
80636716 GCAACTTATC
Statistics
Matches: 225, Mismatches: 35, Indels: 32
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.00
44 27 0.12
45 3 0.01
46 14 0.06
47 48 0.21
48 82 0.36
49 44 0.20
50 5 0.02
51 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
ATGAGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGATGTAGAG
Found at i:80636693 original size:49 final size:48
Alignment explanation
Indices: 80636446--80636714 Score: 191
Period size: 47 Copynumber: 5.7 Consensus size: 48
80636436 AGAGATGAGT
* * ** *
80636446 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGA-GATGAGT-
1 GCCAGTGTAAGA-CATGTCTAGGACATGGCATCCGCCTCGATGATGA-TA
*
80636494 GCCAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGATGATGATA
1 GCCAGTGTAAGACATGTCTAGGACATGGCATCCGCCTCGATGATGATA
* * * * * * *
80636541 GCCAGTGTAAGACGTGTCTGGGACA-CGTAT-CGACTAAGA-GTTG-T-
1 GCCAGTGTAAGACATGTCTAGGACATGGCATCCGCCT-CGATGATGATA
* * * * *
80636585 GCTAGTGTAAGATATGTCTAGGACAT-GCATCAG-CACGTAT-ATACGAGA
1 GCCAGTGTAAGACATGTCTAGGACATGGCATCCGCCTCG-ATGAT--GATA
* * *
80636633 GCTAGTATAAGACCATGTCTAGGACATGGCATCCGCCTCGATGATGCTA
1 GCCAGTGTAAGA-CATGTCTAGGACATGGCATCCGCCTCGATGATGATA
*
80636682 GCCAGTGTAAGACAATGTCTGGGACATGGCATC
1 GCCAGTGTAAGAC-ATGTCTAGGACATGGCATC
80636715 GGCAACTTAT
Statistics
Matches: 174, Mismatches: 30, Indels: 33
0.73 0.13 0.14
Matches are distributed among these distances:
43 1 0.01
44 27 0.16
45 2 0.01
46 18 0.10
47 46 0.26
48 24 0.14
49 43 0.25
50 8 0.05
51 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
GCCAGTGTAAGACATGTCTAGGACATGGCATCCGCCTCGATGATGATA
Found at i:80637604 original size:55 final size:55
Alignment explanation
Indices: 80637478--80637604 Score: 139
Period size: 55 Copynumber: 2.3 Consensus size: 55
80637468 TAAACTTTTT
* *
80637478 AGTCAGTGTTGTACACGGGCAGGCCACACGGGCGTGTGCCATGGTCGTGTCTTAA
1 AGTCAGTGTTGTACACGAGCAGGCCACACGGGCATGTGCCATGGTCGTGTCTTAA
* * * * * * *
80637533 AGTCAGTATCGTACACGAGCATGTCACACGGGCATGTGCTATGG-CTGTGTGTTGA
1 AGTCAGTGTTGTACACGAGCAGGCCACACGGGCATGTGCCATGGTC-GTGTCTTAA
* *
80637588 AGTCAATGTTGCACACG
1 AGTCAGTGTTGTACACG
80637605 GGCTAAGGAC
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
54 1 0.02
55 57 0.98
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.25
Consensus pattern (55 bp):
AGTCAGTGTTGTACACGAGCAGGCCACACGGGCATGTGCCATGGTCGTGTCTTAA
Found at i:80640103 original size:40 final size:40
Alignment explanation
Indices: 80640053--80640239 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
80640043 TACCACAAGC
* * *
80640053 ACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTCGA
1 ACAAATGCCTTCGGGTCTTAGCCCGGACATAGCAACTCGA
* * * *
80640093 ACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGC
1 ACAAATGCCTTCGGGTCTTAGCCCGGACATAGCAACTCGA
* * * *
80640133 ACAAATGCCTTCGGGTCTTAGCCCGGATCAAATC-ACTAGC
1 ACAAATGCCTTCGGGTCTTAGCCCGGA-CATAGCAACTCGA
* * * * * *
80640173 ACAAATGCCTTTGGGACTTAGCCCGGATCAAATC-ACTAGC
1 ACAAATGCCTTCGGGTCTTAGCCCGGA-CATAGCAACTCGA
*
80640213 ACAAATGCCTTCGGGACTTAGCCCGGA
1 ACAAATGCCTTCGGGTCTTAGCCCGGA
80640240 TCTCATTCAA
Statistics
Matches: 132, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
40 128 0.97
41 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
ACAAATGCCTTCGGGTCTTAGCCCGGACATAGCAACTCGA
Found at i:80640135 original size:80 final size:80
Alignment explanation
Indices: 80640050--80640239 Score: 231
Period size: 80 Copynumber: 2.4 Consensus size: 80
80640040 TATTACCACA
* * * * * *
80640050 AGCACAATTGCCTTCGGGTCTTAACCCGG-GCATAGCAACTCGAACGAATGCCTTCGGGTCTTAG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGAGCAAAGC-ACTAGAACAAATGCCTTCGGGACTTAG
*
80640114 CCCGGAT-ATATCAACT
65 CCCGGATCAAATC-ACT
* * * * *
80640130 CGCACAAATGCCTTCGGGTCTTAGCCCGGATCAAATCACTAGCACAAATGCCTTTGGGACTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGAGCAAAGCACTAGAACAAATGCCTTCGGGACTTAGC
80640195 CCGGATCAAATCACT
66 CCGGATCAAATCACT
*
80640210 AGCACAAATGCCTTCGGGACTTAGCCCGGA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGA
80640240 TCTCATTCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
80 86 0.91
81 8 0.09
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (80 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGAGCAAAGCACTAGAACAAATGCCTTCGGGACTTAGC
CCGGATCAAATCACT
Found at i:80640240 original size:40 final size:40
Alignment explanation
Indices: 80640096--80640241 Score: 231
Period size: 40 Copynumber: 3.6 Consensus size: 40
80640086 AACTCGAACG
* * *
80640096 AATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATCAAATC-ACTAGCACA
*
80640136 AATGCCTTCGGGTCTTAGCCCGGATCAAATCACTAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATCAAATCACTAGCACA
*
80640176 AATGCCTTTGGGACTTAGCCCGGATCAAATCACTAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATCAAATCACTAGCACA
80640216 AATGCCTTCGGGACTTAGCCCGGATC
1 AATGCCTTCGGGACTTAGCCCGGATC
80640242 TCATTCAAAT
Statistics
Matches: 100, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 96 0.96
41 4 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATCAAATCACTAGCACA
Found at i:80645282 original size:27 final size:26
Alignment explanation
Indices: 80645245--80645690 Score: 437
Period size: 27 Copynumber: 16.6 Consensus size: 26
80645235 ACATATGGGT
* * *
80645245 AAAATATTCATTTTACCATAAAAGGGA
1 AAAATAGTCATTTTACC-TATAAGGGC
* *
80645272 AAAATAATCATTTTACCACATAAGGGC
1 AAAATAGTCATTTTACC-TATAAGGGC
*
80645299 AAAACAGTCATTTTACCTCATAAGGGC
1 AAAATAGTCATTTTACCT-ATAAGGGC
* *
80645326 AAAATAATCATTTTACCTCATAAGAGC
1 AAAATAGTCATTTTACCT-ATAAGGGC
* * *
80645353 AAAATAATCATTTTACCCCAAAAGGGC
1 AAAATAGTCATTTTA-CCTATAAGGGC
*
80645380 AAAACAGTCATTTTACCTCATAAGGGC
1 AAAATAGTCATTTTACCT-ATAAGGGC
* *
80645407 AAAATAATCATTTTACCTCATAAGAGC
1 AAAATAGTCATTTTACCT-ATAAGGGC
* * *
80645434 AAAATAATCATTTTACCCCAAAAGGGC
1 AAAATAGTCATTTTA-CCTATAAGGGC
*
80645461 AAAACAGTCATTTTACCTCATAAGGGC
1 AAAATAGTCATTTTACCT-ATAAGGGC
* * *
80645488 AAAACAGTTATTTTACCTTATAAGAGC
1 AAAATAGTCATTTTACC-TATAAGGGC
*
80645515 AAAACT-GTCATTTTACCCTACAAGGGC
1 AAAA-TAGTCATTTTA-CCTATAAGGGC
* * *
80645542 AAAACAGTCATTTTACCCCATAAAGGC
1 AAAATAGTCATTTTA-CCTATAAGGGC
* * *
80645569 GAAACAGTCAGTTTACCTCATAAGGGC
1 AAAATAGTCATTTTACCT-ATAAGGGC
80645596 AAAATAGTCATTTTACCTATAAGGGC
1 AAAATAGTCATTTTACCTATAAGGGC
80645622 AAAATAGTCATTTTACCTCATAAGGG-
1 AAAATAGTCATTTTACCT-ATAAGGGC
* *
80645648 AAGAACAGTCATTTTACCCCATAAGGGC
1 AA-AATAGTCATTTTA-CCTATAAGGGC
* *
80645676 AAAGTAATCATTTTA
1 AAAATAGTCATTTTA
80645691 TCGATTAATG
Statistics
Matches: 356, Mismatches: 49, Indels: 28
0.82 0.11 0.06
Matches are distributed among these distances:
26 34 0.10
27 311 0.87
28 11 0.03
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (26 bp):
AAAATAGTCATTTTACCTATAAGGGC
Found at i:80645310 original size:54 final size:54
Alignment explanation
Indices: 80645252--80645678 Score: 511
Period size: 54 Copynumber: 7.9 Consensus size: 54
80645242 GGTAAAATAT
* * * * *
80645252 TCATTTTACCAT-AAAAGGGAAAAATAATCATTTTACCACATAAGGGCAAAACAG
1 TCATTTTACC-TCATAAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAG
* * * * * *
80645306 TCATTTTACCTCATAAGGGCAAAATAATCATTTTACCTCATAAGAGCAAAATAA
1 TCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAG
* * * * *
80645360 TCATTTTACCCCAAAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAATAA
1 TCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAG
* * * *
80645414 TCATTTTACCTCATAAGAGCAAAATAATCATTTTACCCCAAAAGGGCAAAACAG
1 TCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAG
* ** * *
80645468 TCATTTTACCTCATAAGGGCAAAACAGTTATTTTACCTTATAAGAGCAAAACTG
1 TCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAG
* * *
80645522 TCATTTTACC-CTACAAGGGCAAAACAGTCATTTTACCCCATAAAGGCGAAACAG
1 TCATTTTACCTC-ATAAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAG
* * * *
80645576 TCAGTTTACCTCATAAGGGCAAAATAGTCATTTTA-CCTATAAGGGCAAAATAG
1 TCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAG
80645629 TCATTTTACCTCATAAGGG-AAGAACAGTCATTTTACCCCATAAGGGCAAA
1 TCATTTTACCTCATAAGGGCAA-AACAGTCATTTTACCCCATAAGGGCAAA
80645679 GTAATCATTT
Statistics
Matches: 321, Mismatches: 47, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
52 2 0.01
53 46 0.14
54 272 0.85
55 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.26
Consensus pattern (54 bp):
TCATTTTACCTCATAAGGGCAAAACAGTCATTTTACCCCATAAGGGCAAAACAG
Found at i:80645380 original size:81 final size:81
Alignment explanation
Indices: 80645272--80645690 Score: 592
Period size: 81 Copynumber: 5.2 Consensus size: 81
80645262 ATAAAAGGGA
* * * *
80645272 AAAATAATCATTTTACCACATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAATAATCAT
1 AAAATAATCATTTTACCCCAAAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACAGTCAT
80645337 TTTACCTCATAAGAGC
66 TTTACCTCATAAGAGC
* *
80645353 AAAATAATCATTTTACCCCAAAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAATAATCAT
1 AAAATAATCATTTTACCCCAAAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACAGTCAT
80645418 TTTACCTCATAAGAGC
66 TTTACCTCATAAGAGC
*
80645434 AAAATAATCATTTTACCCCAAAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACAGTTAT
1 AAAATAATCATTTTACCCCAAAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACAGTCAT
*
80645499 TTTACCTTATAAGAGC
66 TTTACCTCATAAGAGC
* * * * * *
80645515 AAAACT-GTCATTTTACCCTACAAGGGCAAAACAGTCATTTTACCCCATAAAGGCGAAACAGTCA
1 AAAA-TAATCATTTTACCCCAAAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACAGTCA
* *
80645579 GTTTACCTCATAAGGGC
65 TTTTACCTCATAAGAGC
* * * *
80645596 AAAATAGTCATTTTA-CCTATAAGGGCAAAATAGTCATTTTACCTCATAAGGG-AAGAACAGTCA
1 AAAATAATCATTTTACCCCAAAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAA-AACAGTCA
* *
80645659 TTTTACCCCATAAGGGC
65 TTTTACCTCATAAGAGC
*
80645676 AAAGTAATCATTTTA
1 AAAATAATCATTTTA
80645691 TCGATTAATG
Statistics
Matches: 310, Mismatches: 25, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
79 1 0.00
80 70 0.23
81 238 0.77
82 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (81 bp):
AAAATAATCATTTTACCCCAAAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAACAGTCAT
TTTACCTCATAAGAGC
Found at i:80646003 original size:46 final size:46
Alignment explanation
Indices: 80645904--80646004 Score: 114
Period size: 46 Copynumber: 2.2 Consensus size: 46
80645894 ACTAGTGTGG
* * * *
80645904 GGCCCACATGCCCATGGGGCCTACCCGGCCCAATTCAGCCCAATAT
1 GGCCCAAATGCCCATGGGGCCGACACGACCCAATTCAGCCCAATAT
* * * *
80645950 AGTCCAAATGCCCATGGGGCCGACACGACCC-ATTCTGGCCCACTAT
1 GGCCCAAATGCCCATGGGGCCGACACGACCCAATTC-AGCCCAATAT
80645996 GGCCCAAAT
1 GGCCCAAAT
80646005 CGACCTCAGA
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
45 4 0.09
46 40 0.91
ACGTcount: A:0.24, C:0.39, G:0.22, T:0.16
Consensus pattern (46 bp):
GGCCCAAATGCCCATGGGGCCGACACGACCCAATTCAGCCCAATAT
Found at i:80669491 original size:46 final size:46
Alignment explanation
Indices: 80669436--80669794 Score: 340
Period size: 46 Copynumber: 7.7 Consensus size: 46
80669426 TGGTTGAGCA
*
80669436 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAAGG
* * * * *
80669482 TTCGAACTCGTTGAGTTGAGTCTGAGTT--CGT-CAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAA--AGG
*
80669527 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAAGG
* * * * *
80669575 TTCGAACTCGTTGAGTTGAGTCTGAGTT--CGT-CAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAA--AGG
*
80669620 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAAGG
* * * * *
80669668 TTCGAACTCGTTGAGTTGAGTCTGAGTT--CGT-CAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAA--AGG
* * *
80669713 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAAGG
* *
80669761 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80669795 GGGGCAGGTT
Statistics
Matches: 252, Mismatches: 40, Indels: 42
0.75 0.12 0.13
Matches are distributed among these distances:
43 21 0.08
44 6 0.02
45 6 0.02
46 110 0.44
47 78 0.31
48 6 0.02
49 6 0.02
50 19 0.08
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAAGG
Found at i:80669549 original size:47 final size:47
Alignment explanation
Indices: 80669433--80669743 Score: 295
Period size: 47 Copynumber: 6.7 Consensus size: 47
80669423 GAATGGTTGA
* * * *
80669433 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAA--AT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-CAGATGTAACTAG
* *
80669481 G--TTCGAACTCGTTGAGTTGAGTCTGAGTTCGTCAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTCAGATGTAACTAG
* * * *
80669526 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAA--AT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-CAGATGTAACTAG
* *
80669574 G--TTCGAACTCGTTGAGTTGAGTCTGAGTTCGTCAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTCAGATGTAACTAG
* * * *
80669619 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAA--AT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-CAGATGTAACTAG
* *
80669667 G--TTCGAACTCGTTGAGTTGAGTCTGAGTTCGTCAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTCAGATGTAACTAG
80669712 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
80669744 ACTTATGGAT
Statistics
Matches: 213, Mismatches: 32, Indels: 37
0.76 0.11 0.13
Matches are distributed among these distances:
43 21 0.10
44 6 0.03
45 6 0.03
46 78 0.37
47 79 0.37
48 5 0.02
49 4 0.02
50 14 0.07
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTCAGATGTAACTAG
Found at i:80669592 original size:93 final size:93
Alignment explanation
Indices: 80669433--80669789 Score: 651
Period size: 93 Copynumber: 3.8 Consensus size: 93
80669423 GAATGGTTGA
80669433 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAATGTTCGAACTCGTTGAGT
80669498 TGAGTCTGAGTTCGTCAGATGTAACTAG
66 TGAGTCTGAGTTCGTCAGATGTAACTAG
80669526 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAATGTTCGAACTCGTTGAGT
80669591 TGAGTCTGAGTTCGTCAGATGTAACTAG
66 TGAGTCTGAGTTCGTCAGATGTAACTAG
80669619 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAATGTTCGAACTCGTTGAGT
80669684 TGAGTCTGAGTTCGTCAGATGTAACTAG
66 TGAGTCTGAGTTCGTCAGATGTAACTAG
* * * ** *
80669712 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAATGTTCGAACTCGTTGAGT
*
80669777 TGAGTCCGAGTTC
66 TGAGTCTGAGTTC
80669790 ACTTAGGGGC
Statistics
Matches: 257, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 257 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAATGTTCGAACTCGTTGAGT
TGAGTCTGAGTTCGTCAGATGTAACTAG
Found at i:80672244 original size:54 final size:54
Alignment explanation
Indices: 80672162--80672271 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
80672152 TGGGAATTTT
*
80672162 AAGAAGCAAAATGTGGGTCCTAAGTCCCAGACTACTTAGGCAGCCAGTGTAGGG
1 AAGAAGCAAAATGTGGGTCCTAAGTCCCAGACTACTTAGGCAGCCAGTCTAGGG
*
80672216 AAGAAGCAAAATGTGGGTCCTAAGTCCCAGACTACTTCGGCAGCCAGTCTAGGG
1 AAGAAGCAAAATGTGGGTCCTAAGTCCCAGACTACTTAGGCAGCCAGTCTAGGG
80672270 AA
1 AA
80672272 CTCGAGATTT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.32, C:0.22, G:0.28, T:0.18
Consensus pattern (54 bp):
AAGAAGCAAAATGTGGGTCCTAAGTCCCAGACTACTTAGGCAGCCAGTCTAGGG
Found at i:80676822 original size:46 final size:46
Alignment explanation
Indices: 80676771--80676895 Score: 178
Period size: 46 Copynumber: 2.7 Consensus size: 46
80676761 GGTTGAGCAT
* *
80676771 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGC
* * *
80676817 TCGAACTCGTTGAGTTGTGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGC
* * *
80676863 CCGAGCTTGTTGAGTTGAGTCCAAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
80676896 GGGGCGGGTT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAACGC
Done.