Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 248 of 279
Found at i:80678998 original size:15 final size:16
Alignment explanation
Indices: 80678970--80678999 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
80678960 ACATATCATT
80678970 TATTTCATTATACCAA
1 TATTTCATTATACCAA
80678986 TATTTCA-TATACCA
1 TATTTCATTATACCA
80679000 TCGTTTCCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (16 bp):
TATTTCATTATACCAA
Found at i:80684664 original size:37 final size:37
Alignment explanation
Indices: 80684603--80684681 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
80684593 TTATTACGAA
* * *
80684603 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGAACAAAATCTCCACACGAAGTCATCGG
*
80684640 GTCTTACCCGAACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCGAACAAAATCT-CCACACGAAGTCATCGG
80684677 GTCTT
1 GTCTT
80684682 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGAACAAAATCTCCACACGAAGTCATCGG
Found at i:80684878 original size:47 final size:47
Alignment explanation
Indices: 80684800--80685296 Score: 895
Period size: 47 Copynumber: 10.6 Consensus size: 47
80684790 CCCTTCGGGA
* * * * * * *
80684800 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
* * *
80684847 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
80684894 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
80684941 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
80684988 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
80685035 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
80685082 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
80685129 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
80685176 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
80685223 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
*
80685270 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTCTCACATT
80685297 TATTCAAATA
Statistics
Matches: 438, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 438 1.00
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
Found at i:80689769 original size:53 final size:54
Alignment explanation
Indices: 80689687--80689798 Score: 172
Period size: 53 Copynumber: 2.1 Consensus size: 54
80689677 GGCCGAAATG
* * *
80689687 ATGACCAACATACCCTCATAGGGTAAAATGACTAAAATACTCCCATAGGGTAAA
1 ATGACCAAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAA
* *
80689741 ATGACCAAAATACCC-CATAGGGTAAAATGACCGAAATACCCCCATAGGGTATA
1 ATGACCAAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAA
80689794 ATGAC
1 ATGAC
80689799 TGTAATACCC
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 39 0.74
54 14 0.26
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.19
Consensus pattern (54 bp):
ATGACCAAAATACCCTCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAA
Found at i:80689809 original size:27 final size:27
Alignment explanation
Indices: 80689687--80689798 Score: 163
Period size: 27 Copynumber: 4.2 Consensus size: 27
80689677 GGCCGAAATG
* *
80689687 ATGACCAACATACCCTCATAGGGTAAA
1 ATGACCAAAATACCCCCATAGGGTAAA
* *
80689714 ATGACTAAAATACTCCCATAGGGTAAA
1 ATGACCAAAATACCCCCATAGGGTAAA
80689741 ATGACCAAAATA-CCCCATAGGGTAAA
1 ATGACCAAAATACCCCCATAGGGTAAA
* *
80689767 ATGACCGAAATACCCCCATAGGGTATA
1 ATGACCAAAATACCCCCATAGGGTAAA
80689794 ATGAC
1 ATGAC
80689799 TGTAATACCC
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
26 24 0.32
27 52 0.68
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.19
Consensus pattern (27 bp):
ATGACCAAAATACCCCCATAGGGTAAA
Found at i:80689818 original size:27 final size:27
Alignment explanation
Indices: 80689708--80689853 Score: 107
Period size: 27 Copynumber: 5.4 Consensus size: 27
80689698 ACCCTCATAG
** * *
80689708 GGTAAAATGACTAAAATACTCCC-ATAG
1 GGTAAAATGACTGTAATAC-CCCTGTAA
*** * *
80689735 GGTAAAATGACCAAAATACCCC-ATAG
1 GGTAAAATGACTGTAATACCCCTGTAA
* * ** *
80689761 GGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACTGTAATACCCCTGTAA
*
80689788 GGTATAATGACTGTAATACCCCTGTAA
1 GGTAAAATGACTGTAATACCCCTGTAA
** *
80689815 GGTAAAGCGACTGTAACACCCCTGTAA
1 GGTAAAATGACTGTAATACCCCTGTAA
80689842 GGTAAAATGACT
1 GGTAAAATGACT
80689854 ATTTTGCCTT
Statistics
Matches: 104, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
26 28 0.27
27 76 0.73
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACTGTAATACCCCTGTAA
Found at i:80689874 original size:27 final size:27
Alignment explanation
Indices: 80689842--80690050 Score: 149
Period size: 27 Copynumber: 7.7 Consensus size: 27
80689832 ACCCCTGTAA
*
80689842 GGTAAAATGACTATTTTGCCTTTGTGT
1 GGTAAAATGACTATTTTGCCTTTATGT
* * * *
80689869 GTTAAAATGA-TGGTTTTGCCCTTATGC
1 GGTAAAATGACT-ATTTTGCCTTTATGT
* * * * *
80689896 GATAAAAT-AATGGTTGTT-CATTTATAT
1 GGTAAAATGACT-ATT-TTGCCTTTATGT
*
80689923 GGTAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCTTTATGT
* * * *
80689950 GTTAAATTGACGATTTTG-CTCTTATAT
1 GGTAAAATGACTATTTTGCCT-TTATGT
*
80689977 GGTAAAATGA-TGATTTTGCCTTTATGA
1 GGTAAAATGACT-ATTTTGCCTTTATGT
* *
80690004 GGTAAAATGACTATTTTGCCCTTATAT
1 GGTAAAATGACTATTTTGCCTTTATGT
** *
80690031 GGTAGGATGACTGTTTTGCC
1 GGTAAAATGACTATTTTGCC
80690051 CCTATGTGAT
Statistics
Matches: 141, Mismatches: 32, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
26 5 0.04
27 129 0.91
28 7 0.05
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.42
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCTTTATGT
Found at i:80689951 original size:81 final size:81
Alignment explanation
Indices: 80689841--80690028 Score: 236
Period size: 81 Copynumber: 2.3 Consensus size: 81
80689831 CACCCCTGTA
* * * * *
80689841 AGGTAAAATGACTATTTTGCCTTTGTGTGTTAAAATGATGGTTTTGCCCTTATGCGATAAAATAA
1 AGGTAAAATGACTATTTTGCCCTTATGTGTTAAAATGACGATTTTGCCCTTATACGATAAAATAA
*
80689906 TGGTTGTT-CATTTAT-
66 TGATT-TTGCATTTATG
* * * * *
80689921 ATGGTAAAATGACTATTTTGCCCTTATGTGTTAAATTGACGATTTTGCTCTTATATGGTAAAATG
1 A-GGTAAAATGACTATTTTGCCCTTATGTGTTAAAATGACGATTTTGCCCTTATACGATAAAATA
*
80689986 ATGATTTTGCCTTTATG
65 ATGATTTTGCATTTATG
80690003 AGGTAAAATGACTATTTTGCCCTTAT
1 AGGTAAAATGACTATTTTGCCCTTAT
80690029 ATGGTAGGAT
Statistics
Matches: 93, Mismatches: 12, Indels: 5
0.85 0.11 0.05
Matches are distributed among these distances:
80 3 0.03
81 89 0.96
82 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.43
Consensus pattern (81 bp):
AGGTAAAATGACTATTTTGCCCTTATGTGTTAAAATGACGATTTTGCCCTTATACGATAAAATAA
TGATTTTGCATTTATG
Found at i:80689975 original size:54 final size:54
Alignment explanation
Indices: 80689842--80690058 Score: 179
Period size: 54 Copynumber: 4.0 Consensus size: 54
80689832 ACCCCTGTAA
* * * * * * *
80689842 GGTAAAATGACTATTTTGCCTTTGTGTGTTAAAATGA-TGGTTTTGCCCTTATGC
1 GGTAAAATGACGATTTTGCCCTTATATGGTAAAATGACT-ATTTTGCCCTTATGT
* * * * **
80689896 GATAAAATAATGGTTGTT-CATTTATATGGTAAAATGACTATTTTGCCCTTATGT
1 GGTAAAATGACGATT-TTGCCCTTATATGGTAAAATGACTATTTTGCCCTTATGT
* * * * *
80689950 GTTAAATTGACGATTTTGCTCTTATATGGTAAAATGA-TGATTTTGCCTTTATGA
1 GGTAAAATGACGATTTTGCCCTTATATGGTAAAATGACT-ATTTTGCCCTTATGT
* ** * *
80690004 GGTAAAATGACTATTTTGCCCTTATATGGTAGGATGACTGTTTTGCCCCTATGT
1 GGTAAAATGACGATTTTGCCCTTATATGGTAAAATGACTATTTTGCCCTTATGT
80690058 G
1 G
80690059 ATGTATGTTT
Statistics
Matches: 128, Mismatches: 30, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
53 3 0.02
54 121 0.95
55 4 0.03
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (54 bp):
GGTAAAATGACGATTTTGCCCTTATATGGTAAAATGACTATTTTGCCCTTATGT
Found at i:80690403 original size:18 final size:18
Alignment explanation
Indices: 80690377--80690429 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
80690367 GGACTTGCAT
*
80690377 ACTGCTTACTGTTACTGC
1 ACTGATTACTGTTACTGC
*
80690395 ACTGATTACTGTTATTGC
1 ACTGATTACTGTTACTGC
* * *
80690413 ATTGTTTACTCTTACTG
1 ACTGATTACTGTTACTG
80690430 TAATGGGCTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (18 bp):
ACTGATTACTGTTACTGC
Found at i:80691103 original size:24 final size:26
Alignment explanation
Indices: 80691071--80691136 Score: 82
Period size: 24 Copynumber: 2.6 Consensus size: 26
80691061 CTACAAAATC
80691071 AGTAAGCTCATACGAGCTGAGA-A-T
1 AGTAAGCTCATACGAGCTGAGATATT
* * *
80691095 AGTAAGCTCTTATGAGCTGATATATT
1 AGTAAGCTCATACGAGCTGAGATATT
*
80691121 GGTAAGCTCATACGAG
1 AGTAAGCTCATACGAG
80691137 TTGTGGTGAG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
24 19 0.56
25 1 0.03
26 14 0.41
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.27
Consensus pattern (26 bp):
AGTAAGCTCATACGAGCTGAGATATT
Found at i:80696434 original size:48 final size:48
Alignment explanation
Indices: 80696367--80696512 Score: 172
Period size: 48 Copynumber: 3.0 Consensus size: 48
80696357 GGTTATGTGT
80696367 GATCCCATGTAAGACCATGTCTGAGACTTGGCATTGGCATC-ATTATGA
1 GATCCCATGTAAGACCATGTCTGAGACTTGGCATTGGCATCGA-TATGA
* * * * * * *
80696415 GATCCCATGTAAGATCATGTTTGGGACATGGCATTAGCATCGACATGT
1 GATCCCATGTAAGACCATGTCTGAGACTTGGCATTGGCATCGATATGA
*
80696463 GATCCCATGTAAGACCATATCT-AGGA-TATGGCATTGGCATCGATATGA
1 GATCCCATGTAAGACCATGTCTGA-GACT-TGGCATTGGCATCGATATGA
80696511 GA
1 GA
80696513 CATCGTGTAA
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
48 79 0.99
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGAGACTTGGCATTGGCATCGATATGA
Found at i:80699504 original size:31 final size:31
Alignment explanation
Indices: 80699466--80699529 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
80699456 CCTTTTCATA
*
80699466 TTTCATATTTCATAACACTGGGTCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
80699497 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
80699528 TT
1 TT
80699530 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:80699773 original size:24 final size:24
Alignment explanation
Indices: 80699722--80699816 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
80699712 GCTTTATCAT
*
80699722 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
80699747 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
80699771 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
80699794 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
80699817 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 30 0.46
25 12 0.18
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:80699797 original size:23 final size:23
Alignment explanation
Indices: 80699743--80699815 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
80699733 CCTAGCCTCT
*
80699743 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
80699766 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
80699790 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
80699813 TTT
1 TTT
80699816 TGCACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:80699891 original size:20 final size:20
Alignment explanation
Indices: 80699866--80699930 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
80699856 ATGAATACAC
80699866 CATGTGCATATCATACATAT
1 CATGTGCATATCATACATAT
*
80699886 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAT
*
80699906 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAT
80699926 CATGT
1 CATGT
80699931 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:80699897 original size:11 final size:11
Alignment explanation
Indices: 80699866--80699919 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
80699856 ATGAATACAC
80699866 CATGTGCATAT
1 CATGTGCATAT
*
80699877 CA--TACATAT
1 CATGTGCATAT
80699886 CATGTGCATAT
1 CATGTGCATAT
* *
80699897 CA--TACATGT
1 CATGTGCATAT
80699906 CATGTGCATAT
1 CATGTGCATAT
80699917 CAT
1 CAT
80699920 ACATACCATG
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
CATGTGCATAT
Found at i:80699999 original size:25 final size:25
Alignment explanation
Indices: 80699967--80700014 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
80699957 ATATTTAAAC
* *
80699967 CCTAGGGGCATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
80699992 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
80700015 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:80702344 original size:11 final size:11
Alignment explanation
Indices: 80702317--80702350 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
80702307 TTTTTTTCCA
*
80702317 TATAATAATAAT
1 TATAATAAT-TT
80702329 TATAATAATTT
1 TATAATAATTT
80702340 TATAATAATTT
1 TATAATAATTT
80702351 CAAATATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TATAATAATTT
Found at i:80702456 original size:19 final size:18
Alignment explanation
Indices: 80702419--80702462 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
80702409 ATACTTACAG
80702419 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
80702436 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
80702455 TACTAATT
1 TAATAATT
80702463 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:80716527 original size:27 final size:26
Alignment explanation
Indices: 80716487--80716598 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
80716477 AGGAAGTGCC
*
80716487 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
80716514 CTGGTGGCTCTGCCACGTATT-TCTGTT
1 CTGGTGGCTCTGCCAC--ATTATCTGAT
80716541 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
80716569 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
80716595 CTGG
1 CTGG
80716599 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.65
28 18 0.24
ACGTcount: A:0.14, C:0.24, G:0.24, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:80716593 original size:54 final size:53
Alignment explanation
Indices: 80716487--80716598 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 53
80716477 AGGAAGTGCC
*
80716487 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACGTATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACG-ATTTCTGTT
* * *
80716541 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACGATT-TCTGTT
80716595 CTGG
1 CTGG
80716599 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
53 3 0.06
54 33 0.63
55 16 0.31
ACGTcount: A:0.14, C:0.24, G:0.24, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACGATTTCTGTT
Found at i:80721672 original size:17 final size:18
Alignment explanation
Indices: 80721646--80721679 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80721636 TTTTTGTATA
80721646 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
80721663 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
80721680 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:80727162 original size:15 final size:15
Alignment explanation
Indices: 80727142--80727171 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80727132 CAACATTTGT
80727142 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
80727157 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
80727172 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:80734222 original size:16 final size:16
Alignment explanation
Indices: 80734203--80734233 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80734193 CTTCTTCACT
80734203 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
80734219 TACTTACTTACTTAA
1 TACTCACTTACTTAA
80734234 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:80734239 original size:20 final size:20
Alignment explanation
Indices: 80734200--80734239 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
80734190 AAACTTCTTC
* *
80734200 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
80734220 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
80734240 TTATTAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:80734625 original size:108 final size:110
Alignment explanation
Indices: 80734472--80734669 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
80734462 ATCCTTTTGA
* * *
80734472 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTAAATGATAGCCTTGCCTTA-GAAATCTCACCAA
80734535 -TGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATAGT
* ** *
80734580 AACTTATCAATGCCATGTCTTGACATGGTCTTAAATGATTTCCTTGCCTTAGAAATCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTAAATGATAGCCTTGCCTTAGAAATCTCACCAAT
80734645 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
80734670 CGGTATCCTT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.59
109 7 0.09
110 25 0.31
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTAAATGATAGCCTTGCCTTAGAAATCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGAGACCTTTGCCTTATAGT
Found at i:80734679 original size:55 final size:54
Alignment explanation
Indices: 80734425--80734679 Score: 244
Period size: 55 Copynumber: 4.8 Consensus size: 54
80734415 ACACGGGTAC
* * *
80734425 CTTACC-ATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
80734474 CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * *
80734527 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGAG-A-CCTTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATG-GTATCC-TTGCC-T-TAGAAA
* * * * *
80734582 CTTATCAA-TGCCATGTCTTGACATGGTCTTAAATGATTTCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* *
80734635 TCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
80734680 AAACCCTAAT
Statistics
Matches: 169, Mismatches: 22, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
49 39 0.23
52 4 0.02
53 43 0.25
54 13 0.08
55 68 0.40
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:80737425 original size:11 final size:11
Alignment explanation
Indices: 80737393--80737426 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
80737383 TTGGTCATGA
*
80737393 GAGTTTGAATA
1 GAGTTTGAATG
80737404 GAGTTTGAATG
1 GAGTTTGAATG
80737415 GAGTTTGAATG
1 GAGTTTGAATG
80737426 G
1 G
80737427 GATGTTGGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (11 bp):
GAGTTTGAATG
Found at i:80742491 original size:27 final size:27
Alignment explanation
Indices: 80742461--80742638 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
80742451 ATATTGAGCC
* * * *
80742461 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
80742488 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
80742515 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
80742543 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
80742570 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
80742597 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
80742624 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
80742639 GTACAATTTA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:80742600 original size:82 final size:81
Alignment explanation
Indices: 80742482--80742637 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
80742472 TGCTATATAA
* * *
80742482 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
80742547 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
80742564 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
80742628 CACTTAGTGC
65 CACTTAGTGC
80742638 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 49 0.74
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:80745690 original size:20 final size:21
Alignment explanation
Indices: 80745654--80745701 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
80745644 ATTTTGATAT
*
80745654 ACATGATTTGATATGATATGC
1 ACATGATATGATATGATATGC
80745675 ACATGATATG-TATGATATGC
1 ACATGATATGATATGATATGC
80745695 ACATGAT
1 ACATGAT
80745702 GTATTCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:80745795 original size:24 final size:25
Alignment explanation
Indices: 80745749--80745800 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
80745739 GAGGAAGTGC
80745749 AAAAGGGCTTTGCCCCAGATTATCA
1 AAAAGGGCTTTGCCCCAGATTATCA
*
80745774 AAAAGGGCTTTGCCCCAG-TTATTA
1 AAAAGGGCTTTGCCCCAGATTATCA
80745798 AAA
1 AAA
80745801 GAGGCTAGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGATTATCA
Found at i:80745806 original size:24 final size:24
Alignment explanation
Indices: 80745748--80745820 Score: 78
Period size: 25 Copynumber: 3.0 Consensus size: 24
80745738 GGAGGAAGTG
80745748 CAAAAG-GGCTTTGCCCCAGATTAT
1 CAAAAGAGGCTTTGCCCCAG-TTAT
80745772 CAAAA-AGGGCTTTGCCCCAGTTAT
1 CAAAAGA-GGCTTTGCCCCAGTTAT
* **
80745796 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAGAGGCTTTGCC-CCAGTTAT
80745821 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
24 20 0.48
25 22 0.52
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (24 bp):
CAAAAGAGGCTTTGCCCCAGTTAT
Found at i:80752398 original size:20 final size:21
Alignment explanation
Indices: 80752362--80752409 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
80752352 ATTTTGATAT
*
80752362 ACATGATTTGATATGATATGC
1 ACATGATATGATATGATATGC
80752383 ACATGATATG-TATGATATGC
1 ACATGATATGATATGATATGC
80752403 ACATGAT
1 ACATGAT
80752410 GTATTCATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:80752491 original size:25 final size:25
Alignment explanation
Indices: 80752457--80752526 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
80752447 GAGGAAGTGC
* *
80752457 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
80752482 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
80752507 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
80752527 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:80752539 original size:24 final size:24
Alignment explanation
Indices: 80752456--80752553 Score: 85
Period size: 25 Copynumber: 4.0 Consensus size: 24
80752446 GGAGGAAGTG
* *
80752456 CAAAAG-GGCTTTGCCCTAGTTTAC
1 CAAAAGAGGCTTTGCCCCAG-TTAT
80752480 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAG-TTAT
80752505 CAAAA-AGGGCTTTGCCCCAGTTAT
1 CAAAAGA-GGCTTTGCCCCAGTTAT
* **
80752529 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAGAGGCTTTGCC-CCAGTTAT
80752554 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
24 20 0.31
25 44 0.69
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGAGGCTTTGCCCCAGTTAT
Found at i:80752550 original size:50 final size:50
Alignment explanation
Indices: 80752457--80752551 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
80752447 GAGGAAGTGC
* **
80752457 AAAAGGGCTTTGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
**
80752507 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
80752552 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:80758782 original size:22 final size:22
Alignment explanation
Indices: 80758757--80758843 Score: 95
Period size: 22 Copynumber: 3.8 Consensus size: 22
80758747 TCATGATCGA
80758757 TAAGCTCATACGAGCTGAACAG
1 TAAGCTCATACGAGCTGAACAG
*
80758779 TAAGCTCATACGAGCTGAATCGG
1 TAAGCTCATACGAGCTGAA-CAG
* *
80758802 TAAGCTC-TAATGAGCTGAAAACAA
1 TAAGCTCAT-ACGAGCTG--AACAG
*
80758826 TAAGCTCTTACGAGCTGA
1 TAAGCTCATACGAGCTGA
80758844 TATATAGGTA
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
22 21 0.38
23 16 0.29
24 15 0.27
25 3 0.05
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.22
Consensus pattern (22 bp):
TAAGCTCATACGAGCTGAACAG
Found at i:80758841 original size:47 final size:49
Alignment explanation
Indices: 80758757--80758870 Score: 132
Period size: 47 Copynumber: 2.4 Consensus size: 49
80758747 TCATGATCGA
* *
80758757 TAAGCTC-ATACGAGCTG--AACAGTAAGCTCATACGAGCTG-A-ATCGG
1 TAAGCTCTAT-CGAGCTGAAAACAATAAGCTCATACGAGCTGAATATAGG
*
80758802 TAAGCTCTAAT-GAGCTGAAAACAATAAGCTCTTACGAGCTGATATATAGG
1 TAAGCTCT-ATCGAGCTGAAAACAATAAGCTCATACGAGCTGA-ATATAGG
80758852 TAAGCTCTATCGAGCTGAA
1 TAAGCTCTATCGAGCTGAA
80758871 TTGGTAAGCT
Statistics
Matches: 58, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
45 13 0.22
47 22 0.38
49 3 0.05
50 20 0.34
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (49 bp):
TAAGCTCTATCGAGCTGAAAACAATAAGCTCATACGAGCTGAATATAGG
Found at i:80758858 original size:26 final size:24
Alignment explanation
Indices: 80758757--80758938 Score: 113
Period size: 23 Copynumber: 7.6 Consensus size: 24
80758747 TCATGATCGA
* *
80758757 TAAGCTCATACGAGCTG-A-ACAG
1 TAAGCTCTTACGAGCTGAATATAG
* **
80758779 TAAGCTCATACGAGCTGAAT-CGG
1 TAAGCTCTTACGAGCTGAATATAG
* * * * *
80758802 TAAGCTCTAATGAGCTGAAAACAA
1 TAAGCTCTTACGAGCTGAATATAG
80758826 TAAGCTCTTACGAGCTGATATATAGG
1 TAAGCTCTTACGAGCTGA-ATATA-G
*
80758852 TAAGCTC-TATCGAGCTGAAT-TGG
1 TAAGCTCTTA-CGAGCTGAATATAG
** * * *
80758875 TAAGCTCCAATGAGCTGAAAACAG
1 TAAGCTCTTACGAGCTGAATATAG
* *
80758899 TAAACTCTCACGAGCTGACATATCAG
1 TAAGCTCTTACGAGCTGA-ATAT-AG
*
80758925 TAAGCTCATACGAG
1 TAAGCTCTTACGAG
80758939 TTGTGGTGAG
Statistics
Matches: 123, Mismatches: 27, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
22 17 0.14
23 35 0.28
24 34 0.28
25 9 0.07
26 28 0.23
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.23
Consensus pattern (24 bp):
TAAGCTCTTACGAGCTGAATATAG
Found at i:80758877 original size:73 final size:73
Alignment explanation
Indices: 80758776--80758938 Score: 240
Period size: 73 Copynumber: 2.2 Consensus size: 73
80758766 ACGAGCTGAA
* * *
80758776 CAGTAAGCTCATACGAGCTGAATCGGTAAGCTCTAATGAGCTGAAAACAATAAGCTCTTACGAGC
1 CAGTAAGCTCATACGAGCTGAATCGGTAAGCTCCAATGAGCTGAAAACAATAAACTCTCACGAGC
*
80758841 TGATATAT
66 TGACATAT
* *
80758849 -AGGTAAGCTC-TATCGAGCTGAATTGGTAAGCTCCAATGAGCTGAAAACAGTAAACTCTCACGA
1 CA-GTAAGCTCATA-CGAGCTGAATCGGTAAGCTCCAATGAGCTGAAAACAATAAACTCTCACGA
80758912 GCTGACATAT
64 GCTGACATAT
80758922 CAGTAAGCTCATACGAG
1 CAGTAAGCTCATACGAG
80758939 TTGTGGTGAG
Statistics
Matches: 80, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
72 3 0.04
73 74 0.93
74 3 0.04
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.23
Consensus pattern (73 bp):
CAGTAAGCTCATACGAGCTGAATCGGTAAGCTCCAATGAGCTGAAAACAATAAACTCTCACGAGC
TGACATAT
Found at i:80764719 original size:44 final size:44
Alignment explanation
Indices: 80764665--80764809 Score: 195
Period size: 44 Copynumber: 3.3 Consensus size: 44
80764655 TGGCTTAAAT
80764665 CTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTTAGC
1 CTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTTAGC
* * * * * *
80764709 CTACTTCACTACTGCTTAGGGACACAAGAT-TCGCCATC-TTCGAT
1 CTACTCCACTACTGCTTAGGGAGACAAGATCT-ACAATCTTTAG-C
*
80764753 CTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTTAGC
1 CTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTTAGC
80764797 CTACTCCACTACT
1 CTACTCCACTACT
80764810 ATAGGGAGAT
Statistics
Matches: 83, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
43 4 0.05
44 75 0.90
45 4 0.05
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (44 bp):
CTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTTAGC
Found at i:80766063 original size:8 final size:8
Alignment explanation
Indices: 80766052--80766127 Score: 55
Period size: 8 Copynumber: 8.5 Consensus size: 8
80766042 TCTTTCTTCC
80766052 TTTTTTAT
1 TTTTTTAT
80766060 TTTTTTATT
1 TTTTTTA-T
80766069 TTTTATTGAT
1 TTTT-TT-AT
80766079 TTTTTTAT
1 TTTTTTAT
80766087 TTTTGATTGA-
1 TTTT--TT-AT
80766097 TTTTTTAT
1 TTTTTTAT
*
80766105 TATTATCATAT
1 T-TT-T-TTAT
80766116 TTTTTTAT
1 TTTTTTAT
80766124 TTTT
1 TTTT
80766128 GATTGTTTTG
Statistics
Matches: 56, Mismatches: 2, Indels: 20
0.72 0.03 0.26
Matches are distributed among these distances:
7 1 0.02
8 23 0.41
9 10 0.18
10 16 0.29
11 6 0.11
ACGTcount: A:0.17, C:0.01, G:0.04, T:0.78
Consensus pattern (8 bp):
TTTTTTAT
Found at i:80766082 original size:11 final size:11
Alignment explanation
Indices: 80766066--80766105 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
80766056 TTATTTTTTT
80766066 ATTTTTTATTG
1 ATTTTTTATTG
80766077 A-TTTTT-TT-
1 ATTTTTTATTG
*
80766085 ATTTTTGATTG
1 ATTTTTTATTG
80766096 ATTTTTTATT
1 ATTTTTTATT
80766106 ATTATCATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
8 1 0.04
9 6 0.25
10 7 0.29
11 10 0.42
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.75
Consensus pattern (11 bp):
ATTTTTTATTG
Found at i:80766083 original size:18 final size:19
Alignment explanation
Indices: 80766058--80766136 Score: 94
Period size: 19 Copynumber: 4.3 Consensus size: 19
80766048 TTCCTTTTTT
*
80766058 ATTTTTTTATTTTTTATTG
1 ATTTTTTTATTTTTGATTG
80766077 ATTTTTTTATTTTTGATTG
1 ATTTTTTTATTTTTGATTG
*
80766096 A-TTTTTTATTATT-ATCAT-
1 ATTTTTTTATTTTTGAT--TG
80766114 ATTTTTTTATTTTTGATTG
1 ATTTTTTTATTTTTGATTG
80766133 -TTTT
1 ATTTT
80766137 GGTCTTAAGG
Statistics
Matches: 52, Mismatches: 3, Indels: 11
0.79 0.05 0.17
Matches are distributed among these distances:
17 2 0.04
18 17 0.33
19 31 0.60
20 2 0.04
ACGTcount: A:0.18, C:0.01, G:0.06, T:0.75
Consensus pattern (19 bp):
ATTTTTTTATTTTTGATTG
Found at i:80766101 original size:37 final size:35
Alignment explanation
Indices: 80766060--80766136 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 35
80766050 CCTTTTTTAT
*
80766060 TTTTTTATT-TTTTATTGATTTTTTTATTTTTGATTG
1 TTTTTTATTATTATA-T-ATTTTTTTATTTTTGATTG
80766096 ATTTTTTATTATTATCATATTTTTTTATTTTTGATTG
1 -TTTTTTATTATTAT-ATATTTTTTTATTTTTGATTG
80766133 TTTT
1 TTTT
80766137 GGTCTTAAGG
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
36 4 0.11
37 28 0.76
38 4 0.11
39 1 0.03
ACGTcount: A:0.17, C:0.01, G:0.06, T:0.75
Consensus pattern (35 bp):
TTTTTTATTATTATATATTTTTTTATTTTTGATTG
Found at i:80769284 original size:12 final size:12
Alignment explanation
Indices: 80769267--80769297 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
80769257 ACCAGTTGCT
80769267 CTTGCATTTGTG
1 CTTGCATTTGTG
*
80769279 CTTGCATTTGTT
1 CTTGCATTTGTG
80769291 CTTGCAT
1 CTTGCAT
80769298 CTCCTTCTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.19, G:0.19, T:0.52
Consensus pattern (12 bp):
CTTGCATTTGTG
Found at i:80769472 original size:19 final size:20
Alignment explanation
Indices: 80769448--80769492 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
80769438 TTGTGACATC
*
80769448 CAATGCATATG-ATAAAATG
1 CAATGCAGATGCATAAAATG
*
80769467 CAATGCAGATGCATGAAATG
1 CAATGCAGATGCATAAAATG
80769487 -AATGCA
1 CAATGCA
80769493 AAAAGAGACG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.22
Consensus pattern (20 bp):
CAATGCAGATGCATAAAATG
Found at i:80776840 original size:22 final size:22
Alignment explanation
Indices: 80776820--80776886 Score: 64
Period size: 23 Copynumber: 2.9 Consensus size: 22
80776810 TTTATTTTTT
80776820 TATTTTTAAATTTCTTCTTTTAC
1 TATTTTT-AATTTCTTCTTTTAC
* *
80776843 TATTTTTGATTTCTT-TATTAC
1 TATTTTTAATTTCTTCTTTTAC
*
80776864 TAAATTTCTTTATTTCTTCTTTT
1 T--ATTT-TTAATTTCTTCTTTT
80776887 TAGATCATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 6 0.17
22 7 0.19
23 11 0.31
24 9 0.25
25 3 0.08
ACGTcount: A:0.19, C:0.12, G:0.01, T:0.67
Consensus pattern (22 bp):
TATTTTTAATTTCTTCTTTTAC
Found at i:80777836 original size:26 final size:26
Alignment explanation
Indices: 80777807--80777913 Score: 164
Period size: 26 Copynumber: 4.2 Consensus size: 26
80777797 TGGTACAAAT
80777807 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
*
80777833 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
80777859 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
80777885 TGATAATGGTTTAGGT-AATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
80777910 TGAT
1 TGAT
80777914 GGGAATTTCA
Statistics
Matches: 76, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
25 13 0.17
26 61 0.80
27 2 0.03
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:80779427 original size:26 final size:26
Alignment explanation
Indices: 80779398--80779450 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
80779388 TTTACAGTTT
80779398 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* * *
80779424 TACCTCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
80779450 T
1 T
80779451 GCATGTTCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:80781726 original size:23 final size:24
Alignment explanation
Indices: 80781699--80781746 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
80781689 TATGTATCTT
80781699 TTTAAA-TAA-TATTATTTTTAAAA
1 TTTAAACTAATTATT-TTTTTAAAA
80781722 TTTAAACTTAATTATTTTTTTAAAA
1 TTTAAAC-TAATTATTTTTTTAAAA
80781747 GTGAAATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 6 0.27
25 12 0.55
26 4 0.18
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
TTTAAACTAATTATTTTTTTAAAA
Found at i:80785339 original size:14 final size:15
Alignment explanation
Indices: 80785320--80785349 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
80785310 AAAAGTCTTA
80785320 TTTTATTTTT-ATTT
1 TTTTATTTTTGATTT
80785334 TTTTATTTTTGATTT
1 TTTTATTTTTGATTT
80785349 T
1 T
80785350 ATTTTGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (15 bp):
TTTTATTTTTGATTT
Found at i:80796170 original size:47 final size:47
Alignment explanation
Indices: 80796119--80796213 Score: 145
Period size: 47 Copynumber: 2.0 Consensus size: 47
80796109 CCTTACTTCG
* *
80796119 TGTTATTTTGTTCCTCCAGGTACACGGACTATTAGCAGAAATATGGT
1 TGTTATTTTGTTCCTCCAAGTACACGGACAATTAGCAGAAATATGGT
* **
80796166 TGTTATTTTGTTTCTCCAAGTACACGGACAATTAGTGGAAATATGGT
1 TGTTATTTTGTTCCTCCAAGTACACGGACAATTAGCAGAAATATGGT
80796213 T
1 T
80796214 TTTCTCCAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (47 bp):
TGTTATTTTGTTCCTCCAAGTACACGGACAATTAGCAGAAATATGGT
Found at i:80802919 original size:40 final size:40
Alignment explanation
Indices: 80802829--80803048 Score: 252
Period size: 40 Copynumber: 5.5 Consensus size: 40
80802819 ACCCAAGTAT
* ** *
80802829 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AA-GAC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG-C
* * * *
80802867 CTTCGAGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
80802907 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
80802947 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
80802987 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
80803027 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
80803049 CATTCGAATA
Statistics
Matches: 153, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
38 10 0.07
39 18 0.12
40 120 0.78
41 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:80803818 original size:35 final size:35
Alignment explanation
Indices: 80803779--80803849 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
80803769 AAACTCGGCT
*
80803779 AATACATATATATACACTAGCAATCAAATACTAAC
1 AATACACATATATACACTAGCAATCAAATACTAAC
*
80803814 AATACACATATATACACTAGTAATCAAATACTAAC
1 AATACACATATATACACTAGCAATCAAATACTAAC
80803849 A
1 A
80803850 TTTGCACTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.52, C:0.20, G:0.03, T:0.25
Consensus pattern (35 bp):
AATACACATATATACACTAGCAATCAAATACTAAC
Found at i:80810624 original size:40 final size:40
Alignment explanation
Indices: 80810578--80810704 Score: 175
Period size: 40 Copynumber: 3.2 Consensus size: 40
80810568 TCGCACAAGA
* * *
80810578 CCTTCGGGTCTTAGCTCGGATATGGTCACTAGCATAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
80810618 CCTTCGGGACTTAGCCCGAATATAGTCGCTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
*
80810658 CCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
80810698 CCTTCGG
1 CCTTCGG
80810705 NNNNNNNNNN
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
39 1 0.01
40 75 0.99
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:80813936 original size:50 final size:50
Alignment explanation
Indices: 80813861--80813960 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
80813851 ATTCTTTCAA
80813861 CTCTGTTGGTGCCATTCTATATGAGGCAATCGAGATCGGAGCTGTTCTCG
1 CTCTGTTGGTGCCATTCTATATGAGGCAATCGAGATCGGAGCTGTTCTCG
80813911 CTCTGTTGGTGCCATTCTATATGAGGCAATCGAGATCGGAGCTGTTCTCG
1 CTCTGTTGGTGCCATTCTATATGAGGCAATCGAGATCGGAGCTGTTCTCG
80813961 GTATCAAATC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.18, C:0.22, G:0.28, T:0.32
Consensus pattern (50 bp):
CTCTGTTGGTGCCATTCTATATGAGGCAATCGAGATCGGAGCTGTTCTCG
Found at i:80816867 original size:46 final size:46
Alignment explanation
Indices: 80816631--80816847 Score: 425
Period size: 46 Copynumber: 4.7 Consensus size: 46
80816621 AACCCGCCCC
80816631 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
80816677 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
80816723 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
80816769 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
*
80816815 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG
80816848 ATGCTCAACC
Statistics
Matches: 170, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 170 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
Found at i:80830910 original size:12 final size:12
Alignment explanation
Indices: 80830889--80830924 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
80830879 CTTCCATTGC
80830889 AAAAAAAAAAAG
1 AAAAAAAAAAAG
* *
80830901 AGAGAAAAAAAG
1 AAAAAAAAAAAG
80830913 AAAAAAAAAAAG
1 AAAAAAAAAAAG
80830925 CTAACCTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:80832619 original size:29 final size:29
Alignment explanation
Indices: 80832586--80832650 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
80832576 CTAGTTTATG
*
80832586 AAAATTGAATC-AAATTAAAATTCATGTAT
1 AAAATTGAA-CAAAATCAAAATTCATGTAT
* *
80832615 AAAATTGCACAAAATCAAAGTTCATGTAT
1 AAAATTGAACAAAATCAAAATTCATGTAT
*
80832644 AACATTG
1 AAAATTG
80832651 TGCCATAAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 1 0.03
29 30 0.97
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.31
Consensus pattern (29 bp):
AAAATTGAACAAAATCAAAATTCATGTAT
Found at i:80834062 original size:3 final size:3
Alignment explanation
Indices: 80834056--80834087 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
80834046 ATTATTGAGT
*
80834056 TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
80834088 GCATTTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:80834102 original size:9 final size:10
Alignment explanation
Indices: 80834040--80834101 Score: 56
Period size: 12 Copynumber: 5.9 Consensus size: 10
80834030 TCCTATCATT
80834040 TTATTTATTA
1 TTATTTATTA
80834050 TTGAGTTTATTA
1 TT-A-TTTATTA
80834062 TTA-TTATTA
1 TTATTTATTA
80834071 TTATTATCATTA
1 TTATT-T-ATTA
*
80834083 TTATTGCATT-
1 TTATT-TATTA
80834093 TTATTTATT
1 TTATTTATT
80834102 TATTTGTACC
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
9 12 0.27
10 8 0.18
11 6 0.14
12 18 0.41
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.65
Consensus pattern (10 bp):
TTATTTATTA
Found at i:80837740 original size:55 final size:55
Alignment explanation
Indices: 80837656--80837766 Score: 204
Period size: 55 Copynumber: 2.0 Consensus size: 55
80837646 AGCTAATCAA
*
80837656 TGGGAAAAGAAATTCCAGGATACTCGGGCTCGAGAAGTCGCCTTGGGCAAGAGTC
1 TGGGAAAAGAAATTCCAGGATACTCGGGCTCGAGAAGTCGCCTTGGGAAAGAGTC
*
80837711 TGGGAAAAGAAATTCCAGGATACTCGGGCTCGAGAGGTCGCCTTGGGAAAGAGTC
1 TGGGAAAAGAAATTCCAGGATACTCGGGCTCGAGAAGTCGCCTTGGGAAAGAGTC
80837766 T
1 T
80837767 ACTAGATTGC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.29, C:0.19, G:0.33, T:0.19
Consensus pattern (55 bp):
TGGGAAAAGAAATTCCAGGATACTCGGGCTCGAGAAGTCGCCTTGGGAAAGAGTC
Found at i:80845546 original size:1 final size:1
Alignment explanation
Indices: 80845540--80845575 Score: 63
Period size: 1 Copynumber: 36.0 Consensus size: 1
80845530 TTTGCTTCCT
*
80845540 AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
80845576 GGGGACTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:80847055 original size:44 final size:43
Alignment explanation
Indices: 80846824--80847149 Score: 249
Period size: 44 Copynumber: 7.6 Consensus size: 43
80846814 AAAGAATTGC
* * *
80846824 AGATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAATGTAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAA-GCAG
*
80846868 CA-ATCCTATCTCCCTGAGATTACAGTGGAGCAGATT-AA--AG
1 -AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAG
* * * *
80846908 -GATCTTATCTCCCTGA-AGTTACAGTAGAGCAGATCGCACCAG
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCAG
* * * * * *
80846950 -G-TCTTATTTCCCTGAGATTACAGTGGAACAGACTAAAGAATTTC
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCA---G
*
80846994 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CAG
* *
80847038 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACA-
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAG-CAG
** * * * ** *
80847081 CTATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAAATAA
1 AGATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCAG
* *
80847124 AGGATCTTATCTCTCTGAGGTTACAG
1 A-GATCTTATCTCCCTGAGATTACAG
80847150 CAGAGTAGAT
Statistics
Matches: 223, Mismatches: 42, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
38 1 0.00
39 29 0.13
40 3 0.01
41 28 0.13
42 6 0.03
43 32 0.14
44 89 0.40
45 2 0.01
46 32 0.14
47 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCAG
Found at i:80847091 original size:87 final size:86
Alignment explanation
Indices: 80846825--80847161 Score: 282
Period size: 87 Copynumber: 3.9 Consensus size: 86
80846815 AAGAATTGCA
* * *
80846825 GATCTTATCTCCCT-AAGATTACAGCGGAGCAGATTGAATG-TAGCA-ATCCTATCTCCCTGAGA
1 GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTGAA-GCCAG-AGATCTTATCTCCCTGAGA
* * *
80846887 TTACAGTGGAGCAGAT--TA-AAG
63 TTACAGCGGAGCAGATCGAAGAAC
* * * *
80846908 GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGCA-CCAG-G-TCTTATTTCCCTGAGATTA
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTA
* * *
80846970 CAGTGGAACAGA-CTAAAGAATTTC
66 CAGCGGAGCAGATC-GAAGAA---C
*
80846994 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATT
1 -GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATT
80847059 ACAGCGGAGCAGATCGAAGACAC
65 ACAGCGGAGCAGATCGAAGA-AC
* * * *** * * *
80847082 TATCCTATCTCCCTGAAGTTACAGTGGAGCGGATT-AAAATAAAGGATCTTATCTCTCTGAGGTT
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCAGA-GATCTTATCTCCCTGAGATT
* *
80847146 ACAGCAGAGTAGATCG
65 ACAGCGGAGCAGATCG
80847162 CATCAGGTCT
Statistics
Matches: 207, Mismatches: 30, Indels: 30
0.78 0.11 0.11
Matches are distributed among these distances:
80 28 0.14
82 3 0.01
83 32 0.15
84 3 0.01
86 4 0.02
87 97 0.47
88 5 0.02
89 1 0.00
90 32 0.15
91 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (86 bp):
GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTA
CAGCGGAGCAGATCGAAGAAC
Found at i:80847130 original size:131 final size:126
Alignment explanation
Indices: 80846874--80847149 Score: 292
Period size: 131 Copynumber: 2.2 Consensus size: 126
80846864 GTAGCAATCC
* *
80846874 TATCTCCCTGAGATTACAGTGGAGCAGATTAAAGGATCTTATCTCCCTGAAGTTACAGTAGAGCA
1 TATCTCCCTGAGGTTACAGTGGAGCAGATTAAAGGATCTTATCTCCCTGAAGTTACAGCAGAGCA
* * * * * **
80846939 GATCGCACCAGGTCTTATTTCCCTGAGATTACAGTGGAACAGACTAAAGAATTTCAGATCT
66 GATCGAAACAGATCCTATCTCCCTGAGATTACAGTGGAACAGACTAAAGAATTAAAGATCT
80847000 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTG-AGATTACAGC
1 TATCTCCCTGAGGTTACAGTGGAGCAGATT-AA---AG-GATCTTATCTCCCTGAAG-TTACAGC
* * * * *
80847064 GGAGCAGATCGAAGACACTATCCTATCTCCCTGA-AGTTACAGTGGAGCGGA-TTAA-AA-TAAA
60 AGAGCAGATCGAA-ACA-GATCCTATCTCCCTGAGA-TTACAGTGGAACAGACTAAAGAATTAAA
80847125 GGATCT
122 -GATCT
*
80847131 TATCTCTCTGAGGTTACAG
1 TATCTCCCTGAGGTTACAG
80847150 CAGAGTAGAT
Statistics
Matches: 125, Mismatches: 15, Indels: 15
0.81 0.10 0.10
Matches are distributed among these distances:
126 29 0.23
127 2 0.02
130 6 0.05
131 57 0.46
132 6 0.05
133 25 0.20
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (126 bp):
TATCTCCCTGAGGTTACAGTGGAGCAGATTAAAGGATCTTATCTCCCTGAAGTTACAGCAGAGCA
GATCGAAACAGATCCTATCTCCCTGAGATTACAGTGGAACAGACTAAAGAATTAAAGATCT
Found at i:80852407 original size:28 final size:28
Alignment explanation
Indices: 80852367--80852423 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
80852357 ATTGTTGAAA
80852367 GAAAGCACCGTCATATAGTTGAAGTTGG
1 GAAAGCACCGTCATATAGTTGAAGTTGG
**
80852395 GAAAGCATTGTCATATAGTTGAAGTTGG
1 GAAAGCACCGTCATATAGTTGAAGTTGG
80852423 G
1 G
80852424 CTCACACTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.28
Consensus pattern (28 bp):
GAAAGCACCGTCATATAGTTGAAGTTGG
Found at i:80853404 original size:30 final size:31
Alignment explanation
Indices: 80853346--80853405 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
80853336 CTTAACAAGC
80853346 AAATGCTTCTAAAATAATAAAAAAAATTAAA
1 AAATGCTTCTAAAATAATAAAAAAAATTAAA
*
80853377 AAATGCCTT-TAAAATAAT-AAGAAAATTAA
1 AAATG-CTTCTAAAATAATAAAAAAAATTAA
80853406 CAATAAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 10 0.37
31 14 0.52
32 3 0.11
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.27
Consensus pattern (31 bp):
AAATGCTTCTAAAATAATAAAAAAAATTAAA
Found at i:80858585 original size:41 final size:43
Alignment explanation
Indices: 80858506--80858815 Score: 139
Period size: 45 Copynumber: 7.0 Consensus size: 43
80858496 TTTAGACTTT
* * **
80858506 TATCAAATCACCGGC-TTTCAGCCTGCTAGGTTTTAAACCCGAA
1 TATCAATTCACCGGCATTTC-GCCTGCTAGGCTCGAAACCCGAA
*
80858549 T-TC-ATTCACCGACATTTCGCCTGCTAGGCTCGAAACCCG-A
1 TATCAATTCACCGGCATTTCGCCTGCTAGGCTCGAAACCCGAA
* * * *
80858589 TATCAATTCACTGGCATTATAGCCTACTAGGCTCGAAGGCCCGAA
1 TATCAATTCACCGGCATT-TCGCCTGCTAGGCTCGAA-ACCCGAA
** *
80858634 TAGT--ATATCACCGGCATTATAACCTACTAGGCTC-AAAGGCCCGAA
1 TA-TCAAT-TCACCGGCATT-TCGCCTGCTAGGCTCGAAA--CCCGAA
* *
80858679 TAGT--ATATCACCGGCATTATAGCCTGCTAGGCTC-AAGGGCCCGAA
1 TA-TCAAT-TCACCGGCATT-TCGCCTGCTAGGCTCGAA--ACCCGAA
* *
80858724 TAGT--ATATCACCGGCATTATAGCCTACTAGGCTC-AAAGGCCCGAA
1 TA-TCAAT-TCACCGGCATT-TCGCCTGCTAGGCTCGAAA--CCCGAA
* *
80858769 TAGT--ATATCACCGGTATTATAGCCTGCTAGGCTC-AAAGGCCCGAA
1 TA-TCAAT-TCACCGGCATT-TCGCCTGCTAGGCTCGAAA--CCCGAA
80858814 TA
1 TA
80858816 GTATTGTACG
Statistics
Matches: 233, Mismatches: 20, Indels: 26
0.84 0.07 0.09
Matches are distributed among these distances:
40 2 0.01
41 28 0.12
42 17 0.07
43 17 0.07
44 8 0.03
45 160 0.69
46 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (43 bp):
TATCAATTCACCGGCATTTCGCCTGCTAGGCTCGAAACCCGAA
Found at i:80858660 original size:45 final size:45
Alignment explanation
Indices: 80858596--80858819 Score: 385
Period size: 45 Copynumber: 5.0 Consensus size: 45
80858586 CGATATCAAT
* *
80858596 TCACTGGCATTATAGCCTACTAGGCTCGAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATA
*
80858641 TCACCGGCATTATAACCTACTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATA
* *
80858686 TCACCGGCATTATAGCCTGCTAGGCTCAAGGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATA
80858731 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATA
* *
80858776 TCACCGGTATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTAT
1 TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTAT
80858820 TGTACGATAT
Statistics
Matches: 169, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 169 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAGTATA
Found at i:80859648 original size:25 final size:25
Alignment explanation
Indices: 80859621--80859769 Score: 210
Period size: 25 Copynumber: 6.0 Consensus size: 25
80859611 GTAACTTATT
* * *
80859621 CGGAAATAATAAGGGCAAATTTAAT
1 CGGAAATATTAAGAGCAAATTTAAC
80859646 CGGAAATATTAAGAGCAAATTTAAC
1 CGGAAATATTAAGAGCAAATTTAAC
*
80859671 CGGAAATATTAAGAGCAAATTTAAT
1 CGGAAATATTAAGAGCAAATTTAAC
*
80859696 CGAAAATATTAAGAGCAAATTTAAC
1 CGGAAATATTAAGAGCAAATTTAAC
* *
80859721 CGGAATTATTAAGAACAAATTTAAC
1 CGGAAATATTAAGAGCAAATTTAAC
* *
80859746 CGGAATTATTAAGAAC-AATTTAAC
1 CGGAAATATTAAGAGCAAATTTAAC
80859770 AAGCTTAACT
Statistics
Matches: 115, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
24 8 0.07
25 107 0.93
ACGTcount: A:0.48, C:0.11, G:0.15, T:0.26
Consensus pattern (25 bp):
CGGAAATATTAAGAGCAAATTTAAC
Found at i:80859669 original size:12 final size:12
Alignment explanation
Indices: 80859630--80859719 Score: 63
Period size: 12 Copynumber: 7.2 Consensus size: 12
80859620 TCGGAAATAA
*
80859630 TAAGGGCAAATT
1 TAAGAGCAAATT
** *
80859642 TAATCGGAAATAT
1 TAAGAGCAAAT-T
80859655 TAAGAGCAAATT
1 TAAGAGCAAATT
** *
80859667 TAACCGGAAATAT
1 TAAGAGCAAAT-T
80859680 TAAGAGCAAATT
1 TAAGAGCAAATT
** *
80859692 TAATCGAAAATAT
1 TAAGAGCAAAT-T
80859705 TAAGAGCAAATT
1 TAAGAGCAAATT
80859717 TAA
1 TAA
80859720 CCGGAATTAT
Statistics
Matches: 57, Mismatches: 18, Indels: 6
0.70 0.22 0.07
Matches are distributed among these distances:
12 30 0.53
13 27 0.47
ACGTcount: A:0.49, C:0.09, G:0.16, T:0.27
Consensus pattern (12 bp):
TAAGAGCAAATT
Found at i:80871265 original size:21 final size:20
Alignment explanation
Indices: 80871227--80871270 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
80871217 TATAAAATGT
* *
80871227 ATTTTATTTTATTTATTATG
1 ATTTTATTTTATTCATTAAG
*
80871247 ATTTTCTTTATATTCATTAAG
1 ATTTTATTT-TATTCATTAAG
80871268 ATT
1 ATT
80871271 GGAGATAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.64
Consensus pattern (20 bp):
ATTTTATTTTATTCATTAAG
Found at i:80871766 original size:8 final size:8
Alignment explanation
Indices: 80871753--80871780 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
80871743 TATAAGTAGT
80871753 AATTACAA
1 AATTACAA
80871761 AATTACAA
1 AATTACAA
80871769 AATTACAA
1 AATTACAA
80871777 AATT
1 AATT
80871781 TATATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.29
Consensus pattern (8 bp):
AATTACAA
Found at i:80875153 original size:23 final size:23
Alignment explanation
Indices: 80875126--80875172 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
80875116 GAGGATGACC
80875126 TTAGGGATAACTGAGGGTGCTGA
1 TTAGGGATAACTGAGGGTGCTGA
*
80875149 TTAGGGATAACTGATGGTGCTGA
1 TTAGGGATAACTGAGGGTGCTGA
80875172 T
1 T
80875173 AACTTCGCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.36, T:0.30
Consensus pattern (23 bp):
TTAGGGATAACTGAGGGTGCTGA
Found at i:80886534 original size:19 final size:20
Alignment explanation
Indices: 80886501--80886538 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
80886491 AATTACTTCA
80886501 GAAATTTTGGAAAAAGGAAC
1 GAAATTTTGGAAAAAGGAAC
80886521 GAAATTTT-GAAAAAGGAA
1 GAAATTTTGGAAAAAGGAA
80886539 AAGATGATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.53, C:0.03, G:0.24, T:0.21
Consensus pattern (20 bp):
GAAATTTTGGAAAAAGGAAC
Found at i:80887762 original size:32 final size:32
Alignment explanation
Indices: 80887726--80887790 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
80887716 TTAGAATTCA
80887726 TGCATAAGTTAACTTGAAATTGTAGGTAAGTG
1 TGCATAAGTTAACTTGAAATTGTAGGTAAGTG
80887758 TGCATAAGTTAACTTGAAATTGTAGGTAAGTG
1 TGCATAAGTTAACTTGAAATTGTAGGTAAGTG
80887790 T
1 T
80887791 TTCATTTGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (32 bp):
TGCATAAGTTAACTTGAAATTGTAGGTAAGTG
Found at i:80887815 original size:10 final size:10
Alignment explanation
Indices: 80887800--80887833 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
80887790 TTTCATTTGG
80887800 AAAAATTGTA
1 AAAAATTGTA
*
80887810 AAAAATTG-G
1 AAAAATTGTA
80887819 AAAAATTGTA
1 AAAAATTGTA
80887829 AAAAA
1 AAAAA
80887834 ATTATAGGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.24
Consensus pattern (10 bp):
AAAAATTGTA
Found at i:80887820 original size:19 final size:19
Alignment explanation
Indices: 80887796--80887833 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
80887786 AGTGTTTCAT
80887796 TTGGAAAAATTGTAAAAAA
1 TTGGAAAAATTGTAAAAAA
80887815 TTGGAAAAATTGTAAAAAA
1 TTGGAAAAATTGTAAAAAA
80887834 ATTATAGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.16, T:0.26
Consensus pattern (19 bp):
TTGGAAAAATTGTAAAAAA
Found at i:80889300 original size:23 final size:22
Alignment explanation
Indices: 80889248--80889300 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 22
80889238 TAAATGCTAC
* * *
80889248 TATATTTTATTTTATTTTTTTA
1 TATATTTCATTATATATTTTTA
*
80889270 AATAATTTCATTATATATTTTTA
1 TAT-ATTTCATTATATATTTTTA
80889293 TTATATTT
1 -TATATTT
80889301 ATTTTTTTGA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
22 2 0.08
23 20 0.83
24 2 0.08
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (22 bp):
TATATTTCATTATATATTTTTA
Found at i:80889692 original size:29 final size:27
Alignment explanation
Indices: 80889644--80889697 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 27
80889634 AGCCCCTGTA
80889644 TTTTTTTTATATTTAAAATTTAATTTC
1 TTTTTTTTATATTTAAAATTTAATTTC
80889671 TTTTTTATT-TATTTAAGGAATTTAATT
1 TTTTTT-TTATATTTAA--AATTTAATT
80889698 ATTCTCCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 13 0.54
28 2 0.08
29 9 0.38
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (27 bp):
TTTTTTTTATATTTAAAATTTAATTTC
Found at i:80895415 original size:96 final size:96
Alignment explanation
Indices: 80895285--80895460 Score: 235
Period size: 96 Copynumber: 1.8 Consensus size: 96
80895275 GGTTAGTGGC
* * * * **
80895285 TTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTCATTATTTTTAATTTCCTCCACTACAA
1 TTTAATCTGCTCCACTGCAACTTCAAGGAAATAAGATTCACTATCTTCAACCTCCTCCACTACAA
80895350 CTTCAGAGAGATAAGACTTGTAATTTGTAGT
66 CTTCAGAGAGATAAGACTTGTAATTTGTAGT
* * * * * * *
80895381 TTTAATTTGTTCCACTGCAATTTCAGGGAAATAAGATTCGCTATCTTCAACCTGCTCCACTGCAA
1 TTTAATCTGCTCCACTGCAACTTCAAGGAAATAAGATTCACTATCTTCAACCTCCTCCACTACAA
80895446 CTTCAGAGAGATAAG
66 CTTCAGAGAGATAAG
80895461 GTTAGTGGCT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
96 67 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (96 bp):
TTTAATCTGCTCCACTGCAACTTCAAGGAAATAAGATTCACTATCTTCAACCTCCTCCACTACAA
CTTCAGAGAGATAAGACTTGTAATTTGTAGT
Found at i:80895732 original size:51 final size:51
Alignment explanation
Indices: 80895673--80895835 Score: 139
Period size: 51 Copynumber: 3.4 Consensus size: 51
80895663 TCTACTACAG
* *
80895673 CTTCAGGGAGATAAGATTTATAGCTTGTAGCTTTAATCTGTTTCACTGTGA
1 CTTCAGGGAAATAAGATTTATAGCTTGTAACTTTAATCTGTTTCACTGTGA
* * * * **
80895724 CTTCAGGGAAATAAGA---CTAGC----ATCTTCAATCTG-CTCTA-TGCAA
1 CTTCAGGGAAATAAGATTTATAGCTTGTAACTTTAATCTGTTTC-ACTGTGA
* *
80895767 CTTCA-GGAAGATAAGATTTTTAGCTTGTAACTTTAATCTGTTCCACTGTGA
1 CTTCAGGGAA-ATAAGATTTATAGCTTGTAACTTTAATCTGTTTCACTGTGA
*
80895818 CTTTAGGGAAATAAGATT
1 CTTCAGGGAAATAAGATT
80895836 AACATCTTCA
Statistics
Matches: 85, Mismatches: 15, Indels: 24
0.69 0.12 0.19
Matches are distributed among these distances:
42 4 0.05
43 16 0.19
44 11 0.13
46 4 0.05
48 4 0.05
50 11 0.13
51 31 0.36
52 4 0.05
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (51 bp):
CTTCAGGGAAATAAGATTTATAGCTTGTAACTTTAATCTGTTTCACTGTGA
Found at i:80895806 original size:94 final size:95
Alignment explanation
Indices: 80895609--80895880 Score: 393
Period size: 94 Copynumber: 2.9 Consensus size: 95
80895599 ATTTGTTATT
* * ** * * *
80895609 TTTAACCTGCTCCACTGCAACTTAAGGGAAATAAGATTAGCATATTCAATCTGCTCTACTACAGC
1 TTTAATCTGTTCCACTGTGACTTAAGGGAAATAAGATTAGCATCTTCAATCTGCTCTACTGCAAC
* *
80895674 TTCAGGGAGATAAGATTTATAGCTTGTAGC
66 TTCAGGAAGATAAGATTTATAGCTTGTAAC
* * *
80895704 TTTAATCTGTTTCACTGTGACTTCAGGGAAATAAGACTAGCATCTTCAATCTGCTCTA-TGCAAC
1 TTTAATCTGTTCCACTGTGACTTAAGGGAAATAAGATTAGCATCTTCAATCTGCTCTACTGCAAC
*
80895768 TTCAGGAAGATAAGATTTTTAGCTTGTAAC
66 TTCAGGAAGATAAGATTTATAGCTTGTAAC
* * *
80895798 TTTAATCTGTTCCACTGTGACTTTAGGGAAATAAGATTAACATCTTCAATCTGCTCCACTGCAAC
1 TTTAATCTGTTCCACTGTGACTTAAGGGAAATAAGATTAGCATCTTCAATCTGCTCTACTGCAAC
80895863 TTCAGGAAGATAAGATTT
66 TTCAGGAAGATAAGATTT
80895881 GTGGCTTTAA
Statistics
Matches: 158, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
94 84 0.53
95 74 0.47
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (95 bp):
TTTAATCTGTTCCACTGTGACTTAAGGGAAATAAGATTAGCATCTTCAATCTGCTCTACTGCAAC
TTCAGGAAGATAAGATTTATAGCTTGTAAC
Found at i:80895876 original size:44 final size:44
Alignment explanation
Indices: 80895391--80895923 Score: 238
Period size: 44 Copynumber: 11.6 Consensus size: 44
80895381 TTTAATTTGT
* * *
80895391 TCCACTGCAATTTCAGGGAA-ATAAGATTCGCTATCTTCAACCTGC
1 TCCACTGCAACTTCA-GGAAGATAAGATTAGC-ATCTTCAATCTGC
* ***
80895436 TCCACTGCAACTTCA-GAGAGATAAGGTTAGTGGCTTCAATCTGC
1 TCCACTGCAACTTCAGGA-AGATAAGATTAGCATCTTCAATCTGC
* * **
80895480 TCCACTGTAACTTCAGGGAGATAAGATTCGTTATAATAACTTCAATCTG-
1 TCCACTGCAACTTCAGGAAGATAAGA----TTAGCAT--CTTCAATCTGC
* * * * * * * **
80895529 TCCCACTACAACTTCAGG-GGTATGAGATTTGTAACTTTAATCTAT
1 T-CCACTGCAACTTCAGGAAG-ATAAGATTAGCATCTTCAATCTGC
* * * * * * *
80895574 TCTACTGCAACTTTA-GAGAGATAAGATTTGTTATTTTTAACCTGC
1 TCCACTGCAACTTCAGGA-AGATAAGATTAG-CATCTTCAATCTGC
* *
80895619 TCCACTGCAACTTAAGGGAA-ATAAGATTAGCATATTCAATCTGC
1 TCCACTGCAACTTCA-GGAAGATAAGATTAGCATCTTCAATCTGC
* * * * * * *
80895663 TCTACTACAGCTTCAGGGAGATAAGATTTATAGCTTGTAGCTTTAATCTGT
1 TCCACTGCAACTTCAGGAAGATAAGA--T-TAGC----ATCTTCAATCTGC
* ** *
80895714 TTCACTGTGACTTCAGGGAA-ATAAGACTAGCATCTTCAATCTGC
1 TCCACTGCAACTTCA-GGAAGATAAGATTAGCATCTTCAATCTGC
* * * *
80895758 TCTA-TGCAACTTCAGGAAGATAAGATTTTTAGCTTGTAACTTTAATCTGT
1 TCCACTGCAACTTCAGGAAGATAAGA---TTAGC----ATCTTCAATCTGC
** * *
80895808 TCCACTGTGACTTTAGGGAA-ATAAGATTAACATCTTCAATCTGC
1 TCCACTGCAACTTCA-GGAAGATAAGATTAGCATCTTCAATCTGC
* *** * *
80895852 TCCACTGCAACTTCAGGAAGATAAGATTTGTGGCTTTAATCTTC
1 TCCACTGCAACTTCAGGAAGATAAGATTAGCATCTTCAATCTGC
*
80895896 TCCACTGCAACTTCAGGGAGATAAGATT
1 TCCACTGCAACTTCAGGAAGATAAGATT
80895924 CATCACGATG
Statistics
Matches: 363, Mismatches: 88, Indels: 75
0.69 0.17 0.14
Matches are distributed among these distances:
42 4 0.01
43 24 0.07
44 165 0.45
45 56 0.15
46 9 0.02
47 6 0.02
48 11 0.03
49 2 0.01
50 42 0.12
51 37 0.10
52 7 0.02
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGAAGATAAGATTAGCATCTTCAATCTGC
Found at i:80898893 original size:335 final size:335
Alignment explanation
Indices: 80898276--80898945 Score: 1207
Period size: 335 Copynumber: 2.0 Consensus size: 335
80898266 TCTTCAATCA
* *
80898276 GCTCTAGAACCAGCCTACAATAATTAATCAATTTGGGGTCTCTTGTCTCTCATTCACCTTTGAGT
1 GCTCCAGAACCAGCCTACAATAATTAATCAATTTGGGGTCTCTTGTCTCCCATTCACCTTTGAGT
*
80898341 TGATAGATCACTAATGCAGAATTCCCATATACCTCTAGTACTTTGATGTTACGTTATATGGCTGC
66 TGATAGATCACTAATGCAGAATTCCCATATACCTCTAGTACTTTAATGTTACGTTATATGGCTGC
* *
80898406 ACGGATACCCATGATGCATGCTTTGTATTCTACCATATTGTTCGTGTAATTAAAATCTAATTTAC
131 ACGGATACCCATGATGCATGCTTCGTATTCTACCATATTGTTCGTGTAATTAAAATCCAATTTAC
* *
80898471 TAGTGAATGGATAATGATCTCCATCTTGGGATACTAGGACTACCCCAATTCTACTATTCACAGCA
196 TAGTGAATGGATAATGATCTCCATCTTGGGATACCAGGACTACCCCAATTCTACTATTCACAACA
80898536 TTTGAGGCTCCGTCAAAGTTTAGTTTCCAAGGATAGCCTTCTTGAGAGTCTTCTTTAGTGGTTGC
261 TTTGAGGCTCCGTCAAAGTTTAGTTTCCAAGGATAGCCTTCTTGAGAGTCTTCTTTAGTGGTTGC
80898601 AACATACATT
326 AACATACATT
80898611 GCTCCAGAACCAGCCTACAATAATTAATCAATTTGGGGTCTCTTGTCTCCCATTCACCTTTGAGT
1 GCTCCAGAACCAGCCTACAATAATTAATCAATTTGGGGTCTCTTGTCTCCCATTCACCTTTGAGT
* *
80898676 TGATAGATCACTAATGTAGAA-TCTCCATATACCTCTAGTACTTTAATGTTACGTTTTATGGCTG
66 TGATAGATCACTAATGCAGAATTC-CCATATACCTCTAGTACTTTAATGTTACGTTATATGGCTG
80898740 CACGGATACCCATGATGCATGCTTCGTATTCTACCATATTGTTCGTGTAATTAAAATCCAATTTA
130 CACGGATACCCATGATGCATGCTTCGTATTCTACCATATTGTTCGTGTAATTAAAATCCAATTTA
* *
80898805 CTAGTGAATGGATAATGATCTCCATCTTGGGATACCAGGACTACCCCAATTCTATTATTTACAAC
195 CTAGTGAATGGATAATGATCTCCATCTTGGGATACCAGGACTACCCCAATTCTACTATTCACAAC
* *
80898870 ATTTGAGGCTCCGTCACAGTTTAGTTTCTAAGGATAGCCTTCTTGAGAGTCTTCTTTAGTGGTTG
260 ATTTGAGGCTCCGTCAAAGTTTAGTTTCCAAGGATAGCCTTCTTGAGAGTCTTCTTTAGTGGTTG
80898935 CAACATACATT
325 CAACATACATT
80898946 AGATCTTTAT
Statistics
Matches: 321, Mismatches: 13, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
334 2 0.01
335 319 0.99
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (335 bp):
GCTCCAGAACCAGCCTACAATAATTAATCAATTTGGGGTCTCTTGTCTCCCATTCACCTTTGAGT
TGATAGATCACTAATGCAGAATTCCCATATACCTCTAGTACTTTAATGTTACGTTATATGGCTGC
ACGGATACCCATGATGCATGCTTCGTATTCTACCATATTGTTCGTGTAATTAAAATCCAATTTAC
TAGTGAATGGATAATGATCTCCATCTTGGGATACCAGGACTACCCCAATTCTACTATTCACAACA
TTTGAGGCTCCGTCAAAGTTTAGTTTCCAAGGATAGCCTTCTTGAGAGTCTTCTTTAGTGGTTGC
AACATACATT
Found at i:80904396 original size:19 final size:20
Alignment explanation
Indices: 80904365--80904418 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
80904355 GGTCTTTTTG
* *
80904365 TGAAATTTAATGCATATG-A
1 TGAAATGTAATGCAAATGCA
*
80904384 TGCAATGTAATGCAAATGCA
1 TGAAATGTAATGCAAATGCA
80904404 TGAAATG-AATGCAAA
1 TGAAATGTAATGCAAA
80904419 AAGAGACATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 23 0.77
20 7 0.23
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.28
Consensus pattern (20 bp):
TGAAATGTAATGCAAATGCA
Found at i:80912259 original size:28 final size:28
Alignment explanation
Indices: 80912211--80912301 Score: 128
Period size: 28 Copynumber: 3.2 Consensus size: 28
80912201 GTGACAGAGT
** *
80912211 CACCAGATACAGATGTTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGGGC
80912240 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGGGC
* *
80912268 CACCAGAACAGATAATTTGCGCCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGGGC
80912296 CACCAG
1 CACCAG
80912302 GACGCTTCCT
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 50 0.88
29 7 0.12
ACGTcount: A:0.30, C:0.25, G:0.26, T:0.19
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGGGC
Found at i:80912454 original size:28 final size:28
Alignment explanation
Indices: 80912407--80912471 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
80912397 AAATTAACCC
*
80912407 TAGGGGTATAAAGGTCATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* *
80912435 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
80912463 TAGGGGTAT
1 TAGGGGTAT
80912472 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:80913558 original size:12 final size:13
Alignment explanation
Indices: 80913539--80913571 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
80913529 GGGTTCGGCT
80913539 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
80913552 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
80913564 ATGGAGAA
1 ATGGAGAA
80913572 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:80920109 original size:28 final size:28
Alignment explanation
Indices: 80920061--80920151 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
80920051 GTGACAGAGT
*
80920061 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
80920090 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
80920118 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
80920146 CACCAG
1 CACCAG
80920152 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:80920304 original size:28 final size:28
Alignment explanation
Indices: 80920257--80920321 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
80920247 AAATTAACCC
*
80920257 TAGGGGTATAAAGGTCATTTTGCACACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
* *
80920285 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCACACA
80920313 TAGGGGTAT
1 TAGGGGTAT
80920322 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCACACA
Found at i:80921408 original size:12 final size:13
Alignment explanation
Indices: 80921389--80921421 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
80921379 GGGTTCGGCT
80921389 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
80921402 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
80921414 ATGGAGAA
1 ATGGAGAA
80921422 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:80925852 original size:159 final size:156
Alignment explanation
Indices: 80925563--80926036 Score: 487
Period size: 159 Copynumber: 3.0 Consensus size: 156
80925553 GGTGTTGGTC
* * * *
80925563 ACAACAAAAGATCATGCATTCAACCTAACACAA-TAGGAACACAGGTATATCGT-AAATACTTTT
1 ACAACAAAACATCATGCATTCAACCTAACACAACT-GGATCACAGGTATATCGTGTAACACTTTT
* * *
80925626 TCATTATCAATTCCAAAATATTAAAATCTAATTTGGGTTT-TGAATTTTTTTTATCTTAGTCTGG
65 T-AATGTCAATTCCAAAATATTTAAATCTAATTTGGGTTTCTG-A-TTTTTTT-TCTTAGTCTGG
* *
80925690 TACGAGTACAAGAACTATAAGCCCAAAAAATA
126 TACGAGTACAA-AACTAGAAGCCCAAAAAAGA
* * * *
80925722 ACAACATAACATCATGCATCCAACCTAATACAACTGGATCCCAGGTATATCGTGTAA-ACTATTT
1 ACAACAAAACATCATGCATTCAACCTAACACAACTGGATCACAGGTATATCGTGTAACACT-TTT
* *
80925786 TAATGTCAATTCAAAAATATTTTAATCTAATTTGGGTTTCTGATTTTTTTGGTCTTAGTCTGGTA
65 TAATGTCAATTCCAAAATATTTAAATCTAATTTGGGTTTCTGATTTTTTT--TCTTAGTCTGGTA
*
80925851 CGAGTACACAAACTAGAAGCCAAAAAAAGA
128 CGAGTACA-AAACTAGAAGCCCAAAAAAGA
* * * * ** *
80925881 ACAATAGAACA-CTATGCATTCAGCCTAACATAACCAGATCACAAGTATAT--TGTAAACACTTT
1 ACAACAAAACATC-ATGCATTCAACCTAACACAACTGGATCACAGGTATATCGTGT-AACAC--T
** * * * *
80925943 TTTTAATGTTTATTCCAAATTAATTAAATCTAATTTGGGGTTCTGATTTTTTTTCTCAGTCTGGT
62 TTTTAATGTCAATTCCAAAATATTTAAATCTAATTTGGGTTTCTGATTTTTTTTCTTAGTCTGGT
*
80926008 ACGAGTATGAAAACTAGAAG-CCAAAAAAG
127 ACGAGTA-CAAAACTAGAAGCCCAAAAAAG
80926037 GATGGCATGT
Statistics
Matches: 267, Mismatches: 36, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
157 11 0.04
158 38 0.14
159 161 0.60
160 56 0.21
161 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.33
Consensus pattern (156 bp):
ACAACAAAACATCATGCATTCAACCTAACACAACTGGATCACAGGTATATCGTGTAACACTTTTT
AATGTCAATTCCAAAATATTTAAATCTAATTTGGGTTTCTGATTTTTTTTCTTAGTCTGGTACGA
GTACAAAACTAGAAGCCCAAAAAAGA
Found at i:80926249 original size:82 final size:82
Alignment explanation
Indices: 80926112--80926314 Score: 363
Period size: 82 Copynumber: 2.5 Consensus size: 82
80926102 TTGAGATGAT
* *
80926112 TAACATATTTTGTTTATTTTTTGAAATGATTCGTTGAAATGGTTAGTTAACATCTTACTACTATA
1 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTAGTTAACATCTTACTACTATA
80926177 GGATCATTTTGTTAGCA
66 GGATCATTTTGTTAGCA
*
80926194 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTAGTTAACATCTTACTATTATA
1 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTAGTTAACATCTTACTACTATA
*
80926259 GGATCATTTTGTTAGTA
66 GGATCATTTTGTTAGCA
80926276 TAACATATTTTGTTTGTTTTTTGAAATGATTT-TTGAAAT
1 TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAAT
80926315 ATGTATACCA
Statistics
Matches: 117, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
81 7 0.06
82 110 0.94
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.50
Consensus pattern (82 bp):
TAACATATTTTGTTTGTTTTTTGAAATGATTTGTTGAAATGGTTAGTTAACATCTTACTACTATA
GGATCATTTTGTTAGCA
Found at i:80926936 original size:51 final size:51
Alignment explanation
Indices: 80926860--80926961 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
80926850 CCAACCAAAA
80926860 TCACTTTTCTCTGGTTTTTTCAACTTTAGCAGTAGTTCTTTGAACTACTTT
1 TCACTTTTCTCTGGTTTTTTCAACTTTAGCAGTAGTTCTTTGAACTACTTT
*
80926911 TCACTTTTCTCTGGTTTTTTCAACTTTAGCAGTAGTTCTTTGAATTACTTT
1 TCACTTTTCTCTGGTTTTTTCAACTTTAGCAGTAGTTCTTTGAACTACTTT
80926962 CCCTACTTTC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.18, C:0.19, G:0.12, T:0.52
Consensus pattern (51 bp):
TCACTTTTCTCTGGTTTTTTCAACTTTAGCAGTAGTTCTTTGAACTACTTT
Found at i:80927015 original size:66 final size:68
Alignment explanation
Indices: 80926909--80927036 Score: 172
Period size: 66 Copynumber: 1.9 Consensus size: 68
80926899 TTGAACTACT
* ** *
80926909 TTTCACTTTTCTCTGGTTTTTTCAACTTTAGCAGTAGTTCTTTGAATTACTTTCCCTACTTTCCC
1 TTTCACTTTTCTCTGGTTTCTTCAACTTTAGCAACAGTTCTTTGAACTACTTTCCCTACTTTCCC
80926974 AAC
66 AAC
* *
80926977 TTTC-CTTTTCTCTGG-TTCTTCAACTTTTA-CAACAGTTCTTTGAACTACTTTTCCTTCTTT
1 TTTCACTTTTCTCTGGTTTCTTCAAC-TTTAGCAACAGTTCTTTGAACTACTTTCCCTACTTT
80927037 TTATTTTCTT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
66 34 0.64
67 15 0.28
68 4 0.08
ACGTcount: A:0.16, C:0.25, G:0.08, T:0.51
Consensus pattern (68 bp):
TTTCACTTTTCTCTGGTTTCTTCAACTTTAGCAACAGTTCTTTGAACTACTTTCCCTACTTTCCC
AAC
Found at i:80927357 original size:162 final size:162
Alignment explanation
Indices: 80927133--80927443 Score: 459
Period size: 162 Copynumber: 1.9 Consensus size: 162
80927123 TCTTTGTTCT
* *
80927133 TTCAAGGTATGTTTTTTTTTAATTTTCTTTTACCTTTTCTACTTTCTCCTTGAGGGTAAATGGCT
1 TTCAAGGTATG-TCTTTTTTAATTTTATTTTACCTTTTCTACTTTCTCCTTGAGGGTAAATGGCT
* * *
80927198 TTGGTCTCCATTTAAAAATGGGTTTCGTTTGGTCTCC-TTCTATTCACTTTGTTGTTCTTAACTA
65 TTGGTCTCCATTTAAAAACGAGTTTCGTTTGGTC-CCTTTCTATTCACTTTGTTATTCTTAACTA
80927262 TTGACAAATTGTATAAGATTTGTTTTTGTGTTTCC
129 TTGACAAATTGTATAA-ATTTGTTTTTGTGTTTCC
* * *
80927297 TTCAAGGTATG-CTTTTTT-ATTTTATTTTTCCTTTTCTATTTTCT-CTGTGAGAGGTAAATGGT
1 TTCAAGGTATGTCTTTTTTAATTTTATTTTACCTTTTCTACTTTCTCCT-TGAG-GGTAAATGGC
* *
80927359 TTTGGTCTCCATTTAAAAACGAGTTTTGTTTGGTCCCTTTCTATTCACTTTGTTATTCTTAACTC
64 TTTGGTCTCCATTTAAAAACGAGTTTCGTTTGGTCCCTTTCTATTCACTTTGTTATTCTTAACTA
80927424 TTGACAAATTGTATAAATTT
129 TTGACAAATTGTATAAATTT
80927444 ATTTGTGTTT
Statistics
Matches: 134, Mismatches: 10, Indels: 9
0.88 0.07 0.06
Matches are distributed among these distances:
160 2 0.01
161 33 0.25
162 88 0.66
164 11 0.08
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.51
Consensus pattern (162 bp):
TTCAAGGTATGTCTTTTTTAATTTTATTTTACCTTTTCTACTTTCTCCTTGAGGGTAAATGGCTT
TGGTCTCCATTTAAAAACGAGTTTCGTTTGGTCCCTTTCTATTCACTTTGTTATTCTTAACTATT
GACAAATTGTATAAATTTGTTTTTGTGTTTCC
Found at i:80928838 original size:22 final size:22
Alignment explanation
Indices: 80928813--80928864 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
80928803 GCTAAAACGG
80928813 TGGTTTCGGGGCTGTTTTGGGT
1 TGGTTTCGGGGCTGTTTTGGGT
80928835 TGGTTTCGGGGCTGTTTTGGGT
1 TGGTTTCGGGGCTGTTTTGGGT
80928857 TGGTTTCG
1 TGGTTTCG
80928865 TGACCTCCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.00, C:0.10, G:0.44, T:0.46
Consensus pattern (22 bp):
TGGTTTCGGGGCTGTTTTGGGT
Found at i:80930197 original size:13 final size:13
Alignment explanation
Indices: 80930179--80930214 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
80930169 TCTGGTTGAC
80930179 TATTTGACTGAAA
1 TATTTGACTGAAA
*
80930192 TATTTGACTGGAA
1 TATTTGACTGAAA
80930205 TATTTGACTG
1 TATTTGACTG
80930215 TCTGATTGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (13 bp):
TATTTGACTGAAA
Found at i:80934301 original size:33 final size:33
Alignment explanation
Indices: 80934264--80934374 Score: 127
Period size: 33 Copynumber: 3.4 Consensus size: 33
80934254 TACCCAAATG
* * *
80934264 GTACAACTTGAAAAGGTTATGTACACTTTGTGT
1 GTACCACTTGAAAAGGTTAGGTATACTTTGTGT
* *
80934297 GTA-CACTTGGAAAGGTTAGGTATACTTAGTGT
1 GTACCACTTGAAAAGGTTAGGTATACTTTGTGT
* **
80934329 ATACCA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTACCACT-TGAAAAGGTTAGGTATACTTTGTGT
80934362 GTACCACTTGAAA
1 GTACCACTTGAAA
80934375 TGGAATGTAC
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
32 27 0.42
33 36 0.56
34 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (33 bp):
GTACCACTTGAAAAGGTTAGGTATACTTTGTGT
Found at i:80937587 original size:25 final size:25
Alignment explanation
Indices: 80937522--80937689 Score: 95
Period size: 25 Copynumber: 6.7 Consensus size: 25
80937512 CATGTAAATA
* * *
80937522 GGAAGCTCTTTCGGGCCATATAATG
1 GGAAGCTCTTGCGAGCCATATAACG
** * **
80937547 GGAAGCTAATGTGAGCTGTATAACG
1 GGAAGCTCTTGCGAGCCATATAACG
* * *
80937572 GGAAGCTCTTGCGAGCCAAACATCG
1 GGAAGCTCTTGCGAGCCATATAACG
* *
80937597 GGAAGCTCTTGCGAGCCAAATATCG
1 GGAAGCTCTTGCGAGCCATATAACG
* ** * *
80937622 AGAAGCTCAAGAGAGCTAT-TAATCG
1 GGAAGCTCTTGCGAGCCATATAA-CG
* * * **
80937647 GGAAGCTCTTGAGAGCTAAATAATT
1 GGAAGCTCTTGCGAGCCATATAACG
* *
80937672 GGAAGCTCATGAGAGCCA
1 GGAAGCTCTTGCGAGCCA
80937690 AGTATCGGGA
Statistics
Matches: 109, Mismatches: 32, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
24 2 0.02
25 104 0.95
26 3 0.03
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (25 bp):
GGAAGCTCTTGCGAGCCATATAACG
Found at i:80937627 original size:50 final size:49
Alignment explanation
Indices: 80937572--80937699 Score: 132
Period size: 50 Copynumber: 2.6 Consensus size: 49
80937562 CTGTATAACG
* * *
80937572 GGAAGCTCTTGCGAGCCAAACATCGGGAAGCTCTTGCGAGCCAAAT-ATC
1 GGAAGCTCATGAGAGCCAAA-ATCGGGAAGCTCTTGAGAGCCAAATAATC
* * * * *
80937621 GAGAAGCTCAAGAGAGCTATTAATCGGGAAGCTCTTGAGAGCTAAATAATT
1 G-GAAGCTCATGAGAGCCA-AAATCGGGAAGCTCTTGAGAGCCAAATAATC
*
80937672 GGAAGCTCATGAGAGCCAAGTATCGGGA
1 GGAAGCTCATGAGAGCCAA-AATCGGGA
80937700 CGCTTATAAG
Statistics
Matches: 63, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
49 1 0.02
50 58 0.92
51 4 0.06
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.20
Consensus pattern (49 bp):
GGAAGCTCATGAGAGCCAAAATCGGGAAGCTCTTGAGAGCCAAATAATC
Found at i:80947045 original size:40 final size:40
Alignment explanation
Indices: 80946976--80947184 Score: 179
Period size: 41 Copynumber: 5.2 Consensus size: 40
80946966 CGGGGTTTAG
** * * **
80946976 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTTTTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAAC
* * * *
80947015 CTGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAAC
* **
80947055 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGA-CTTAAC
* * * **
80947095 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGT
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAAC
* * * *
80947136 CCGAATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAAC
80947177 CCGGATAT
1 CCGGATAT
80947185 CATTCGAGTA
Statistics
Matches: 145, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
39 17 0.12
40 59 0.41
41 66 0.46
42 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAAC
Found at i:80947126 original size:41 final size:41
Alignment explanation
Indices: 80947029--80947184 Score: 226
Period size: 41 Copynumber: 3.8 Consensus size: 41
80947019 ATATGGTCAC
* *
80947029 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGC-
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCT
* * *
80947069 TAGCACAAATGCCTTC-GGATCTTAGTCCGGATGTAGTCGCT
1 TAGCACAAAAGCCTTCGGGA-CTTAGCCCGGATATAGTCGCT
* *
80947110 TAGCACAAAAGCCTTCGGGACTTAGTCCGAATATAGTCGCT
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCT
80947151 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
80947185 CATTCGAGTA
Statistics
Matches: 105, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.03
40 33 0.31
41 66 0.63
42 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (41 bp):
TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCT
Found at i:80947129 original size:81 final size:82
Alignment explanation
Indices: 80947029--80947182 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 82
80947019 ATATGGTCAC
* * * *
80947029 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAATGCCTTC-GGATCTT
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGAATATAGTCGCTTAGCACAAAAGCCTTCGGGA-CTT
*
80947092 AGTCCGGATGTAGTCGCT
65 AGCCCGGATGTAGTCGCT
*
80947110 TAGCACAAAAGCCTTCGGGACTTAGTCCGAATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTA
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGAATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTA
80947175 GCCCGGAT
66 GCCCGGAT
80947183 ATCATTCGAG
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 36 0.55
82 26 0.40
83 3 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (82 bp):
TAGCACAAAAGCCTTCGGGACTTAGCCCGAATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTA
GCCCGGATGTAGTCGCT
Found at i:80953558 original size:19 final size:19
Alignment explanation
Indices: 80953522--80953560 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
80953512 TTTTCATCAT
* *
80953522 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
80953541 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
80953560 A
1 A
80953561 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:80953870 original size:28 final size:28
Alignment explanation
Indices: 80953823--80953887 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
80953813 AAATTAACCC
*
80953823 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
80953851 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
80953879 TAGGGGTAT
1 TAGGGGTAT
80953888 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:80957607 original size:29 final size:30
Alignment explanation
Indices: 80957555--80957619 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
80957545 ATTGATTACA
*
80957555 AAAAGGAATGGTGACGACCATC-AATTATAG
1 AAAAGGAATGGTGACAACCATCAAATTAT-G
**
80957585 AAAAGG-ATGGTGACAACTGTCAAATTATG
1 AAAAGGAATGGTGACAACCATCAAATTATG
80957614 AAAAGG
1 AAAAGG
80957620 GATAGCCTCG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 19 0.61
30 12 0.39
ACGTcount: A:0.45, C:0.11, G:0.25, T:0.20
Consensus pattern (30 bp):
AAAAGGAATGGTGACAACCATCAAATTATG
Found at i:80958438 original size:40 final size:40
Alignment explanation
Indices: 80958290--80958481 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
80958280 CATTTGAATG
* * *
80958290 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * *
80958330 TTATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
80958370 TTATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* *
80958410 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * *
80958450 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCTGGGCTAAGACCCGAAGGCATTTGTGC
80958482 TTGTGGTTAT
Statistics
Matches: 141, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
40 138 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:80966544 original size:40 final size:40
Alignment explanation
Indices: 80966489--80966699 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
80966479 ATTTGAATGA
*
80966489 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
80966529 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
80966569 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
80966609 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
80966649 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
80966689 TATCC-GGCTAA
1 TATCCGGGCTAA
80966700 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:80993444 original size:36 final size:36
Alignment explanation
Indices: 80993415--80993485 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
80993405 AATAAGTATG
* *
80993415 AAACCGATTCATAACATATTTTATAAAATATGTTAC
1 AAACCGATTAATAACATATTTTATAAAATAAGTTAC
* *
80993451 AAACCGATTAATGACATATTTTATAAAATATGTTA
1 AAACCGATTAATAACATATTTTATAAAATAAGTTA
80993486 TGTATTAGAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.37
Consensus pattern (36 bp):
AAACCGATTAATAACATATTTTATAAAATAAGTTAC
Found at i:80994030 original size:39 final size:39
Alignment explanation
Indices: 80993974--80994142 Score: 250
Period size: 39 Copynumber: 4.3 Consensus size: 39
80993964 GTATGAGATT
*
80993974 GAAAATATATCCCGACATGAGGTCCGCAGGCTATATGCTG
1 GAAAA-ATATCCGGACATGAGGTCCGCAGGCTATATGCTG
80994014 GAAAAATATCCGGACATGAGGTCCGCAGGCTATATGCT-
1 GAAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* *
80994052 GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
1 GAAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* * ** *
80994091 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTACTG
1 GAAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTG
80994130 GAAAAATATCCGG
1 GAAAAATATCCGG
80994143 GTTAAAGTCC
Statistics
Matches: 118, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 37 0.31
39 76 0.64
40 5 0.04
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.21
Consensus pattern (39 bp):
GAAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTG
Found at i:80994111 original size:77 final size:77
Alignment explanation
Indices: 80993973--80994142 Score: 250
Period size: 77 Copynumber: 2.2 Consensus size: 77
80993963 TGTATGAGAT
* * *
80993973 TGAAAATATATCCCGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGGTCC
1 TGAAAA-ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGGTCC
* *
80994038 GCAGGCTATATGC
65 GCAGGCTACATAC
* *
80994051 TGAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCCG
1 TGAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGGTCCG
*
80994116 CAGGCTACGTAC
66 CAGGCTACATAC
80994128 TGGAAAAATATCCGG
1 T-GAAAAATATCCGG
80994143 GTTAAAGTCC
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
77 64 0.77
78 19 0.23
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (77 bp):
TGAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGGTCCG
CAGGCTACATAC
Found at i:81000269 original size:26 final size:26
Alignment explanation
Indices: 81000240--81000292 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
81000230 CGAGTTGTAG
* **
81000240 CTTACGCATCGAGGTAATTGAAGCCA
1 CTTACGCATCAAGACAATTGAAGCCA
81000266 CTTACGCATCAAGACAATTGAAGCCA
1 CTTACGCATCAAGACAATTGAAGCCA
81000292 C
1 C
81000293 ATTAGAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (26 bp):
CTTACGCATCAAGACAATTGAAGCCA
Found at i:81004243 original size:39 final size:39
Alignment explanation
Indices: 81004188--81004357 Score: 232
Period size: 39 Copynumber: 4.3 Consensus size: 39
81004178 GTATGAGATT
81004188 GAAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
1 GAAAA-ATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* * *
81004228 GAAAAATATCCGGACATAAGGTCCGCAGGCTTTATGCAG
1 GAAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* *
81004267 GAAAAATATCCGGACATGAGATCCGCAGGCTATATGCTA
1 GAAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* * * * **
81004306 GAAATATATCCAGACTTGAGGTTCGCAGGCTACGTGCTG
1 GAAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTG
81004345 GAAAAATATCCGG
1 GAAAAATATCCGG
81004358 GTTAAAGTCC
Statistics
Matches: 112, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 107 0.96
40 5 0.04
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (39 bp):
GAAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTG
Found at i:81011088 original size:27 final size:27
Alignment explanation
Indices: 81011050--81011179 Score: 163
Period size: 27 Copynumber: 4.8 Consensus size: 27
81011040 CCATAATCGA
81011050 TAAAATGACTATTTTGCCCTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGGGG
* *
81011077 TAAAATGACTATTCTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGGGG
*
81011104 TAAAATGATTATTTTGCCCTTTATGGGG
1 TAAAATGACTATTTTGCCC-TTATGGGG
* *
81011132 TAAAATGACTGTTTTTG-CCTTATGTGG
1 TAAAATGACT-ATTTTGCCCTTATGGGG
** *
81011159 TAAAATGTTTGTTTTGCCCTT
1 TAAAATGACTATTTTGCCCTT
81011180 TTATGGTAAG
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.06
27 61 0.69
28 18 0.20
29 5 0.06
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.42
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGGGG
Done.