Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 249 of 279
Found at i:81011153 original size:55 final size:55
Alignment explanation
Indices: 81011050--81011185 Score: 186
Period size: 55 Copynumber: 2.5 Consensus size: 55
81011040 CCATAATCGA
*
81011050 TAAAATGACTATTTTGCCC-TTATGGGGTAAAATGACTATTCTGCCCTTATGAGG
1 TAAAATGATTATTTTGCCCTTTATGGGGTAAAATGACTATTCTGCCCTTATGAGG
* * *
81011104 TAAAATGATTATTTTGCCCTTTATGGGGTAAAATGACTGTTTTTG-CCTTATGTGG
1 TAAAATGATTATTTTGCCCTTTATGGGGTAAAATGACT-ATTCTGCCCTTATGAGG
* *
81011159 TAAAATGTTTGTTTTGCCCTTTTATGG
1 TAAAATGATTATTTTGCCC-TTTATGG
81011186 TAAGATGATT
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
54 18 0.25
55 44 0.60
56 11 0.15
ACGTcount: A:0.24, C:0.13, G:0.21, T:0.42
Consensus pattern (55 bp):
TAAAATGATTATTTTGCCCTTTATGGGGTAAAATGACTATTCTGCCCTTATGAGG
Found at i:81011186 original size:27 final size:27
Alignment explanation
Indices: 81011050--81011199 Score: 108
Period size: 27 Copynumber: 5.5 Consensus size: 27
81011040 CCATAATCGA
* * * **
81011050 TAAAATGACTATTTTGCCCTTATGGGG
1 TAAAATGATTGTTTTGCCCTTTTATGG
* * * *
81011077 TAAAATGACTATTCTGCCCTTATGA-GG
1 TAAAATGATTGTTTTGCCCTT-TTATGG
*
81011104 TAAAATGATTATTTTGCCC-TTTATGGGG
1 TAAAATGATTGTTTTGCCCTTTTAT--GG
* * *
81011132 TAAAATGACTGTTTTTG-CCTTATGTGG
1 TAAAATGATTG-TTTTGCCCTTTTATGG
*
81011159 TAAAATGTTTGTTTTGCCCTTTTATGG
1 TAAAATGATTGTTTTGCCCTTTTATGG
*
81011186 TAAGATGATTGTTT
1 TAAAATGATTGTTT
81011200 GACCCCTATG
Statistics
Matches: 99, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
25 2 0.02
26 6 0.06
27 70 0.71
28 13 0.13
29 8 0.08
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.43
Consensus pattern (27 bp):
TAAAATGATTGTTTTGCCCTTTTATGG
Found at i:81015004 original size:35 final size:35
Alignment explanation
Indices: 81014964--81015030 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
81014954 ATTTTATGAT
*
81014964 TATTTTGAGGTCTATGATATGATTGCATGATTGTG
1 TATTTTGAGGTATATGATATGATTGCATGATTGTG
81014999 TATTTTGAGGTATATGATATGATTGCATGATT
1 TATTTTGAGGTATATGATATGATTGCATGATT
81015031 CTGTGAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.25, C:0.04, G:0.24, T:0.46
Consensus pattern (35 bp):
TATTTTGAGGTATATGATATGATTGCATGATTGTG
Found at i:81018254 original size:43 final size:41
Alignment explanation
Indices: 81018207--81018305 Score: 108
Period size: 43 Copynumber: 2.3 Consensus size: 41
81018197 AGATAGAGTG
* *
81018207 TTACATGAAATCAATTAACGATGCCAATGTCCCCGACATGATC
1 TTACATGAAATCAA-T-ACAATGCCAATGTCCCAGACATGATC
* * * *
81018250 TTACATGTAATCTCAATACAATGCCAATTTCCCAGACATGGTT
1 TTACATG-AA-ATCAATACAATGCCAATGTCCCAGACATGATC
81018293 TTACATGAAATCA
1 TTACATGAAATCA
81018306 CATATCCATA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
41 3 0.06
42 2 0.04
43 35 0.74
44 3 0.06
45 4 0.09
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.29
Consensus pattern (41 bp):
TTACATGAAATCAATACAATGCCAATGTCCCAGACATGATC
Found at i:81042616 original size:12 final size:12
Alignment explanation
Indices: 81042601--81042636 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
81042591 TCTTTAAATT
81042601 GAACAGTCAATC
1 GAACAGTCAATC
*
81042613 GAACATTTCAATC
1 GAACA-GTCAATC
81042626 GAACAGTCAAT
1 GAACAGTCAAT
81042637 ATGATGTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (12 bp):
GAACAGTCAATC
Found at i:81044567 original size:43 final size:42
Alignment explanation
Indices: 81044501--81044589 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 42
81044491 AGATCGTACA
* * *
81044501 ATGCCAACGTCCTAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCTAGACAGGGTCTTACACGAAATCAAATAT-G
*
81044544 ATGCC-ACTGTCCTAGATAGGGTCTTACACGAAATCAAATATG
1 ATGCCAAC-GTCCTAGACAGGGTCTTACACGAAATCAAATATG
81044586 ATGC
1 ATGC
81044590 TGATGTCCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
42 7 0.17
43 34 0.83
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (42 bp):
ATGCCAACGTCCTAGACAGGGTCTTACACGAAATCAAATATG
Found at i:81051486 original size:36 final size:35
Alignment explanation
Indices: 81051406--81051523 Score: 130
Period size: 36 Copynumber: 3.3 Consensus size: 35
81051396 TACTCTCTGT
* *
81051406 TTTGGTGTGTTTCGATTGGACTAGCTCTTCTGAGC-
1 TTTGGTGTGTTTCGA-TGGATTAGCTCTTATGAGCA
*
81051441 TATTGGTGTGTTTCAGATGGATTAGCTCTTATAAGCA
1 T-TTGGTGTGTTTC-GATGGATTAGCTCTTATGAGCA
* * *
81051478 TTTAGTGTGTTTTGGATGTATTAGCTCTTATGAGCA
1 TTTGGTGTG-TTTCGATGGATTAGCTCTTATGAGCA
*
81051514 TCTGGTGTGT
1 TTTGGTGTGT
81051524 GTGTTTTTTG
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
35 2 0.03
36 62 0.89
37 6 0.09
ACGTcount: A:0.17, C:0.12, G:0.27, T:0.44
Consensus pattern (35 bp):
TTTGGTGTGTTTCGATGGATTAGCTCTTATGAGCA
Found at i:81058327 original size:30 final size:30
Alignment explanation
Indices: 81058291--81058351 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
81058281 CATGATTTTT
81058291 TGGTAGATTGTGTAGAATACAATCTATGTA
1 TGGTAGATTGTGTAGAATACAATCTATGTA
81058321 TGGTAGATTGTGTAGAATACAATCTATGTA
1 TGGTAGATTGTGTAGAATACAATCTATGTA
81058351 T
1 T
81058352 AGAGGTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.38
Consensus pattern (30 bp):
TGGTAGATTGTGTAGAATACAATCTATGTA
Found at i:81064777 original size:3 final size:3
Alignment explanation
Indices: 81064771--81065060 Score: 84
Period size: 3 Copynumber: 94.7 Consensus size: 3
81064761 ACAATGGCAG
* * * * *
81064771 TAA TAA TGA TAA TAA TAA -AG TAA TAAA TCA TAA TGA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
81064816 TAA TAA T-A TAA GTAA TAA T-A TAA GTAA TAA T-A TAA GTAAA TACA
1 TAA TAA TAA TAA -TAA TAA TAA TAA -TAA TAA TAA TAA -T-AA TA-A
* * * * *
81064860 GAGA GAA T-A TGTA TAA TAA -CA TAA TAA TACC TATA TAA -AA TTAA
1 TA-A TAA TAA T-AA TAA TAA TAA TAA TAA TA-A TA-A TAA TAA -TAA
* * * * * *
81064904 CTAA CCTAA TAA CAA -GA TGA TAA TAC TAG TAA TAA TAA TAA -GA TGGAA
1 -TAA --TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T--AA
* * * * * *
81064952 -AA CAA TAA TAA T-A TAT TAA TAA GAA TGAA -AA CAA T-A TAT TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA
** *
81064994 TAA TAA CGA TAAA TAA TAA TAAA TGA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
*
81065041 TAA TAA TAA TAA TAG TAA TA
1 TAA TAA TAA TAA TAA TAA TA
81065061 GCATAATAGT
Statistics
Matches: 213, Mismatches: 46, Indels: 56
0.68 0.15 0.18
Matches are distributed among these distances:
2 22 0.10
3 149 0.70
4 35 0.16
5 7 0.03
ACGTcount: A:0.58, C:0.04, G:0.08, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:81064851 original size:12 final size:12
Alignment explanation
Indices: 81064780--81064854 Score: 93
Period size: 12 Copynumber: 6.2 Consensus size: 12
81064770 GTAATAATGA
81064780 TAATAATA-AAG
1 TAATAATATAAG
81064791 TAATAAATCATAA-
1 TAAT-AAT-ATAAG
*
81064804 TGATAATAGTAA-
1 TAATAATA-TAAG
81064816 TAATAATATAAG
1 TAATAATATAAG
81064828 TAATAATATAAG
1 TAATAATATAAG
81064840 TAATAATATAAG
1 TAATAATATAAG
81064852 TAA
1 TAA
81064855 ATACAGAGAG
Statistics
Matches: 57, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
11 8 0.14
12 43 0.75
13 4 0.07
14 2 0.04
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (12 bp):
TAATAATATAAG
Found at i:81065233 original size:17 final size:19
Alignment explanation
Indices: 81065189--81065233 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 19
81065179 ATATATATGC
81065189 ATGTATTAAAAATAATAATA
1 ATGTATT-AAAATAATAATA
81065209 ATGT-TTAAAA-AATAATA
1 ATGTATTAAAATAATAATA
81065226 AT-TATTAA
1 ATGTATTAA
81065234 TAATTTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 1 0.04
17 13 0.54
18 4 0.17
19 2 0.08
20 4 0.17
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (19 bp):
ATGTATTAAAATAATAATA
Found at i:81068901 original size:47 final size:47
Alignment explanation
Indices: 81068833--81068929 Score: 194
Period size: 47 Copynumber: 2.1 Consensus size: 47
81068823 GCATTGGTTT
81068833 TTATTATACTTCCACTGTAAATAAGTTTTGGCAAAGAAAACAATTAA
1 TTATTATACTTCCACTGTAAATAAGTTTTGGCAAAGAAAACAATTAA
81068880 TTATTATACTTCCACTGTAAATAAGTTTTGGCAAAGAAAACAATTAA
1 TTATTATACTTCCACTGTAAATAAGTTTTGGCAAAGAAAACAATTAA
81068927 TTA
1 TTA
81068930 ACGTTTTCGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (47 bp):
TTATTATACTTCCACTGTAAATAAGTTTTGGCAAAGAAAACAATTAA
Found at i:81082743 original size:25 final size:25
Alignment explanation
Indices: 81082709--81082761 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 25
81082699 ATCTAGTGCT
81082709 ATAAGAAAATGA-TTATGATAAATTC
1 ATAAGAAAAT-ACTTATGATAAATTC
81082734 ATAAGAAAATACTTATGATAAATTC
1 ATAAGAAAATACTTATGATAAATTC
81082759 ATA
1 ATA
81082762 CTTTTTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.53, C:0.06, G:0.09, T:0.32
Consensus pattern (25 bp):
ATAAGAAAATACTTATGATAAATTC
Found at i:81101014 original size:23 final size:22
Alignment explanation
Indices: 81100982--81101037 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
81100972 TAATTTTGGT
81100982 ATATGATGAAGT-TATCTT-ATAA
1 ATATGATGAA-TCTATCTTGA-AA
81101004 ATATGCATGAATCTATCTTGAAA
1 ATATG-ATGAATCTATCTTGAAA
*
81101027 ATATGTTGAAT
1 ATATGATGAAT
81101038 TGGATTGGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 11 0.37
23 18 0.60
24 1 0.03
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.39
Consensus pattern (22 bp):
ATATGATGAATCTATCTTGAAA
Found at i:81104098 original size:29 final size:28
Alignment explanation
Indices: 81104062--81104139 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
81104052 TCATGAGATT
81104062 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
81104092 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
81104119 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
81104140 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:81104357 original size:174 final size:174
Alignment explanation
Indices: 81104092--81104419 Score: 629
Period size: 174 Copynumber: 1.9 Consensus size: 174
81104082 AAATTGTACA
81104092 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
81104157 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTACGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
81104222 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
81104266 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
81104331 TGTACGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTACGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
81104396 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
81104420 ACCTTGAGTT
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 151 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTACGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:81116673 original size:25 final size:22
Alignment explanation
Indices: 81116639--81116694 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 22
81116629 TGATTAGGTG
*
81116639 GTTGTATGGTTGTTATATGGTTGTT
1 GTTGTATGG-TG--ATATGGTAGTT
*
81116664 GTTGTGTGGTGATATGGTAGTT
1 GTTGTATGGTGATATGGTAGTT
*
81116686 GTTGGATGG
1 GTTGTATGG
81116695 CGTTTCAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 17 0.63
24 2 0.07
25 8 0.30
ACGTcount: A:0.12, C:0.00, G:0.39, T:0.48
Consensus pattern (22 bp):
GTTGTATGGTGATATGGTAGTT
Found at i:81117843 original size:21 final size:20
Alignment explanation
Indices: 81117819--81117867 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
81117809 TTTATTTCTA
* *
81117819 TTAATTTAGCCATTTTTTATT
1 TTAATTTA-ACATTTTTTAAT
*
81117840 TTAATATTAATATTTTTTAAT
1 TTAAT-TTAACATTTTTTAAT
81117861 TTAATTT
1 TTAATTT
81117868 TTAAATTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 19 0.79
22 3 0.12
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (20 bp):
TTAATTTAACATTTTTTAAT
Found at i:81117870 original size:12 final size:14
Alignment explanation
Indices: 81117851--81117883 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
81117841 TAATATTAAT
*
81117851 ATTTTTTAATT-TA
1 ATTTTTAAATTCTA
81117864 ATTTTTAAATTCTA
1 ATTTTTAAATTCTA
81117878 ATTTTT
1 ATTTTT
81117884 CTTTCGTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTTTTAAATTCTA
Found at i:81121162 original size:14 final size:14
Alignment explanation
Indices: 81121136--81121195 Score: 59
Period size: 14 Copynumber: 4.3 Consensus size: 14
81121126 ACTATCTTTA
81121136 TTTTTATTGTTATTT
1 TTTTTATT-TTATTT
81121151 TTTTTATTTTATTT
1 TTTTTATTTTATTT
*** *
81121165 TTCAGA-TTTATAT
1 TTTTTATTTTATTT
*
81121178 GTTTTATTTTATTT
1 TTTTTATTTTATTT
81121192 TTTT
1 TTTT
81121196 ACGCACTTTA
Statistics
Matches: 34, Mismatches: 10, Indels: 3
0.72 0.21 0.06
Matches are distributed among these distances:
13 8 0.24
14 18 0.53
15 8 0.24
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.77
Consensus pattern (14 bp):
TTTTTATTTTATTT
Found at i:81132487 original size:4 final size:4
Alignment explanation
Indices: 81132478--81132503 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
81132468 TTAACCAAGC
81132478 TATT TATT TATT TATT TATT TATT TA
1 TATT TATT TATT TATT TATT TATT TA
81132504 AATGAGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:81138694 original size:174 final size:174
Alignment explanation
Indices: 81138404--81139043 Score: 1253
Period size: 174 Copynumber: 3.7 Consensus size: 174
81138394 ACTCGGCCCT
81138404 GTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTATTT
1 GTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTATTT
81138469 ACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGA
66 ACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGA
81138534 AATGCATGGCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAA
131 AATGCATGGCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAA
81138578 GTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTATTT
1 GTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTATTT
81138643 ACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGA
66 ACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGA
81138708 AATGCATGGCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAA
131 AATGCATGGCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAA
81138752 GTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTATTT
1 GTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTATTT
81138817 ACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGA
66 ACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGA
81138882 AATGCATGGCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAA
131 AATGCATGGCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAA
*
81138926 GTGTGCGCGGTTGATTATTAAGCACTATGTGTACGAACCCAATATATATTTTCTATAAATTATTT
1 GTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTATTT
* *
81138991 ACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
66 ACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGT
81139044 ACCTTGAGTT
Statistics
Matches: 463, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 463 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTATTT
ACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGA
AATGCATGGCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAA
Found at i:81151297 original size:25 final size:22
Alignment explanation
Indices: 81151263--81151318 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 22
81151253 TGATTAGGTG
*
81151263 GTTGTATGGTTGTTATATGGTTGTT
1 GTTGTATGG-TG--ATATGGTAGTT
*
81151288 GTTGTGTGGTGATATGGTAGTT
1 GTTGTATGGTGATATGGTAGTT
*
81151310 GTTGGATGG
1 GTTGTATGG
81151319 CGTTTCAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 17 0.63
24 2 0.07
25 8 0.30
ACGTcount: A:0.12, C:0.00, G:0.39, T:0.48
Consensus pattern (22 bp):
GTTGTATGGTGATATGGTAGTT
Found at i:81152467 original size:21 final size:20
Alignment explanation
Indices: 81152443--81152491 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
81152433 TTTATTTCTA
* *
81152443 TTAATTTAGCCATTTTTTATT
1 TTAATTTA-ACATTTTTTAAT
*
81152464 TTAATATTAATATTTTTTAAT
1 TTAAT-TTAACATTTTTTAAT
81152485 TTAATTT
1 TTAATTT
81152492 TTAAATTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 19 0.79
22 3 0.12
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (20 bp):
TTAATTTAACATTTTTTAAT
Found at i:81152494 original size:12 final size:14
Alignment explanation
Indices: 81152475--81152507 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
81152465 TAATATTAAT
*
81152475 ATTTTTTAATT-TA
1 ATTTTTAAATTCTA
81152488 ATTTTTAAATTCTA
1 ATTTTTAAATTCTA
81152502 ATTTTT
1 ATTTTT
81152508 CTTTCGTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTTTTAAATTCTA
Found at i:81155786 original size:14 final size:14
Alignment explanation
Indices: 81155760--81155819 Score: 59
Period size: 14 Copynumber: 4.3 Consensus size: 14
81155750 ACTATCTTTA
81155760 TTTTTATTGTTATTT
1 TTTTTATT-TTATTT
81155775 TTTTTATTTTATTT
1 TTTTTATTTTATTT
*** *
81155789 TTCAGA-TTTATAT
1 TTTTTATTTTATTT
*
81155802 GTTTTATTTTATTT
1 TTTTTATTTTATTT
81155816 TTTT
1 TTTT
81155820 ACGCACTTTA
Statistics
Matches: 34, Mismatches: 10, Indels: 3
0.72 0.21 0.06
Matches are distributed among these distances:
13 8 0.24
14 18 0.53
15 8 0.24
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.77
Consensus pattern (14 bp):
TTTTTATTTTATTT
Found at i:81167111 original size:4 final size:4
Alignment explanation
Indices: 81167102--81167127 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
81167092 TTAACCAAGC
81167102 TATT TATT TATT TATT TATT TATT TA
1 TATT TATT TATT TATT TATT TATT TA
81167128 AATGAGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:81172828 original size:37 final size:37
Alignment explanation
Indices: 81172778--81172856 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
81172768 TTATTACGAA
* * *
81172778 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
81172815 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
81172852 GTCTT
1 GTCTT
81172857 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:81173053 original size:47 final size:47
Alignment explanation
Indices: 81172975--81173360 Score: 673
Period size: 47 Copynumber: 8.2 Consensus size: 47
81172965 CCCTTCGGGA
* * * * * *
81172975 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81173022 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81173069 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81173116 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81173163 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81173210 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81173257 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81173306 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81173353 CTTATCAC
1 CTTATCAC
81173361 CATTTCATAT
Statistics
Matches: 325, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 279 0.86
49 46 0.14
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81178180 original size:23 final size:23
Alignment explanation
Indices: 81178150--81178201 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
81178140 TAGATTTTTC
*
81178150 CTAAATATTATCACTAAAGAATT
1 CTAAATATTATCACAAAAGAATT
*
81178173 CTAAATATTATCACAAAATAATT
1 CTAAATATTATCACAAAAGAATT
*
81178196 CAAAAT
1 CTAAAT
81178202 TTAAAAATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.33
Consensus pattern (23 bp):
CTAAATATTATCACAAAAGAATT
Found at i:81184140 original size:43 final size:43
Alignment explanation
Indices: 81183941--81184141 Score: 235
Period size: 43 Copynumber: 4.7 Consensus size: 43
81183931 GCGTTCCTAA
* * * *
81183941 CTTTAACGGTGCTTTTCCCACAAACGCCGGCTATATACCATGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCC-GCTAAAGACCATGAC
**
81183985 CTTTAGCGGCGCTTTTCCCACAAACGTAGCTAAAGACCATGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGAC
** * * * *
81184028 CTTTAGCAACGCATTTT-CCATAAACGCTGCTAAAAATCATGAC
1 CTTTAGCGGCGC-TTTTCCCACAAACGCCGCTAAAGACCATGAC
81184071 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCA-GTAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATG-AC
* *
81184114 CTTTAGCGGCGCTTCTACCACAAACGCC
1 CTTTAGCGGCGCTTTTCCCACAAACGCC
81184142 ACTATAAAAA
Statistics
Matches: 133, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
42 5 0.04
43 100 0.75
44 28 0.21
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.24
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGAC
Found at i:81186795 original size:147 final size:147
Alignment explanation
Indices: 81186582--81186990 Score: 696
Period size: 147 Copynumber: 2.8 Consensus size: 147
81186572 CTTACCTTTG
* * * * * *
81186582 AAAATTTATTTCATTTGGAATAAAATGACACTATTTTGTTATGCTAAAAGGGCGCTA-TTTTTTA
1 AAAAATTATTTCATTTGGAATAAAACGACACTGTTTTGCTAT-ATAAAATGGCGCTATTTTTTTA
** *
81186646 AAGTAAAATTA-TTTTTTAAGCCTGTTTTTTATAAAAACGCCGCTATTGCTTACCTTTTGCGGCG
65 AAGTAAAATTACTTTTTTGTGGC-GTTTTTTATAAAAACGCCGCTATTGCTTACCTTTTGCGGCG
81186710 TTTGTCATAAAAACGCCGC
129 TTTGTCATAAAAACGCCGC
81186729 AAAAATTATTTCATTTGGAATAAAACGACACTGTTTTGCTATATAAAATGGCGCTATTTTTTTAA
1 AAAAATTATTTCATTTGGAATAAAACGACACTGTTTTGCTATATAAAATGGCGCTATTTTTTTAA
81186794 AGTAAAATTACTTTTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTTACCTTTTGCGGCGTT
66 AGTAAAATTACTTTTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTTACCTTTTGCGGCGTT
81186859 TGTCATAAAAACGCCGC
131 TGTCATAAAAACGCCGC
*
81186876 AAAAATTATTTCCTTTGGAATAAAACGACACTGTTTTGCTATATAAAATGGCGCTATTTTTTTAA
1 AAAAATTATTTCATTTGGAATAAAACGACACTGTTTTGCTATATAAAATGGCGCTATTTTTTTAA
81186941 AGTAAAATTACTTTTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTT
66 AGTAAAATTACTTTTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTT
81186991 TGCGGCGTTT
Statistics
Matches: 250, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
146 12 0.05
147 230 0.92
148 8 0.03
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.40
Consensus pattern (147 bp):
AAAAATTATTTCATTTGGAATAAAACGACACTGTTTTGCTATATAAAATGGCGCTATTTTTTTAA
AGTAAAATTACTTTTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTTACCTTTTGCGGCGTT
TGTCATAAAAACGCCGC
Found at i:81187888 original size:28 final size:28
Alignment explanation
Indices: 81187856--81187913 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
81187846 CTGAATCTCT
* * *
81187856 AAACCCTAAATCACTAACCCCTAACCCC
1 AAACCCCAAATCACTAACCACTAAACCC
*
81187884 AAACCCCAAATCCCTAACCACTAAACCC
1 AAACCCCAAATCACTAACCACTAAACCC
81187912 AA
1 AA
81187914 TAAGCTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.43, C:0.45, G:0.00, T:0.12
Consensus pattern (28 bp):
AAACCCCAAATCACTAACCACTAAACCC
Found at i:81188102 original size:21 final size:20
Alignment explanation
Indices: 81188078--81188129 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 20
81188068 CGAATCCATA
* *
81188078 AACCCTAAATCCCTAACTCTT
1 AACCCTAAAT-CCTAACCCCT
*
81188099 AACCTCTAACTCCTAACCCCT
1 AACC-CTAAATCCTAACCCCT
81188120 AACCCATAAA
1 AACCC-TAAA
81188130 CCTTAAATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 1 0.04
21 19 0.76
22 5 0.20
ACGTcount: A:0.37, C:0.40, G:0.00, T:0.23
Consensus pattern (20 bp):
AACCCTAAATCCTAACCCCT
Found at i:81188109 original size:14 final size:14
Alignment explanation
Indices: 81188088--81188122 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
81188078 AACCCTAAAT
*
81188088 CCCTAACTCTTAAC
1 CCCTAACTCCTAAC
*
81188102 CTCTAACTCCTAAC
1 CCCTAACTCCTAAC
81188116 CCCTAAC
1 CCCTAAC
81188123 CCATAAACCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.29, C:0.46, G:0.00, T:0.26
Consensus pattern (14 bp):
CCCTAACTCCTAAC
Found at i:81188178 original size:14 final size:15
Alignment explanation
Indices: 81188155--81188187 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
81188145 CTTAAATCAG
81188155 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
*
81188169 AATCCTTAATTCCAT
1 AATCCCTAATTCCAT
81188184 AATC
1 AATC
81188188 TATAAACCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.36, C:0.30, G:0.00, T:0.33
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:81188650 original size:41 final size:41
Alignment explanation
Indices: 81188593--81188749 Score: 201
Period size: 41 Copynumber: 3.9 Consensus size: 41
81188583 AAATGTTTTT
* * *
81188593 GCGGCGCTTTTTCAAAAACGCCGTTAAAGCCCCGAGCATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCGAGCATTA
81188634 GCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCGAGCATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCGAGCATTA
****
81188675 GCGGCGCTTTTCCAAAAACGCCGCTAAA-AATAAAGCATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCGAGCATTA
* * *
81188715 GCGGCGCTTCTT-CAAAAATGCCGGTAAAGCCCCGA
1 GCGGCGCTT-TTCCAAAAACGCCGCTAAAGACCCGA
81188750 AAACTCAAAA
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
40 31 0.31
41 69 0.69
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (41 bp):
GCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCGAGCATTA
Found at i:81189857 original size:23 final size:23
Alignment explanation
Indices: 81189829--81189874 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
81189819 CTAGTGGTAA
*
81189829 CATGTGACAATCTCTCAGTATGT
1 CATGTGACAACCTCTCAGTATGT
81189852 CATGTGACAACCTCTCAGTATGT
1 CATGTGACAACCTCTCAGTATGT
81189875 TACGTGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (23 bp):
CATGTGACAACCTCTCAGTATGT
Found at i:81189881 original size:23 final size:23
Alignment explanation
Indices: 81189832--81189881 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
81189822 GTGGTAACAT
* *
81189832 GTGACAATCTCTCAGTATGTCAT
1 GTGACAACCTCTCAGTATGTCAC
*
81189855 GTGACAACCTCTCAGTATGTTAC
1 GTGACAACCTCTCAGTATGTCAC
81189878 GTGA
1 GTGA
81189882 AAAATATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (23 bp):
GTGACAACCTCTCAGTATGTCAC
Found at i:81195039 original size:40 final size:40
Alignment explanation
Indices: 81194984--81195125 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
81194974 TATTCGGATG
*
81194984 ATATCCGGGCTAAGTCCCGAAGGCCTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
81195024 ATATCCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
81195064 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
81195104 ATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
81195126 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.15
40 78 0.83
41 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:81202251 original size:42 final size:42
Alignment explanation
Indices: 81202173--81202281 Score: 134
Period size: 42 Copynumber: 2.6 Consensus size: 42
81202163 GCCCTGTTTT
* * * *
81202173 CACACAGCCTG-TGACACAGGCGTGTCGGTGGCCGTGTGATG
1 CACACGGCCTGTTGACACGGGCATGTCGGTGGCCGTGTGAGG
81202214 CACACGG-CT-TATGACACGGGCATGTCTGGTGGCCGTGTGAGG
1 CACACGGCCTGT-TGACACGGGCATGTC-GGTGGCCGTGTGAGG
*
81202256 CACACGGCCTGTTTACACGGGCATGT
1 CACACGGCCTGTTGACACGGGCATGT
81202282 GACCCTTAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
40 2 0.03
41 19 0.33
42 21 0.36
43 15 0.26
44 1 0.02
ACGTcount: A:0.17, C:0.27, G:0.35, T:0.21
Consensus pattern (42 bp):
CACACGGCCTGTTGACACGGGCATGTCGGTGGCCGTGTGAGG
Found at i:81202530 original size:23 final size:23
Alignment explanation
Indices: 81202500--81202545 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
81202490 CCTATTCTGG
81202500 CAACGGATACGGGTTAGGGGTGT
1 CAACGGATACGGGTTAGGGGTGT
81202523 CAACGGATACGGGTTAGGGGTGT
1 CAACGGATACGGGTTAGGGGTGT
81202546 TACACACCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.13, G:0.43, T:0.22
Consensus pattern (23 bp):
CAACGGATACGGGTTAGGGGTGT
Found at i:81203483 original size:34 final size:34
Alignment explanation
Indices: 81203437--81203506 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
81203427 ATCATTTAAG
81203437 TATAAATATTTTATATGATCAAACCTTAAGACTT
1 TATAAATATTTTATATGATCAAACCTTAAGACTT
*
81203471 TATAAATCTTTTATATGATCAAACCTTAAGACTT
1 TATAAATATTTTATATGATCAAACCTTAAGACTT
81203505 TA
1 TA
81203507 GCATTTAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.41
Consensus pattern (34 bp):
TATAAATATTTTATATGATCAAACCTTAAGACTT
Found at i:81205621 original size:29 final size:29
Alignment explanation
Indices: 81205579--81205638 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
81205569 GAGGTTTCAA
*
81205579 AGCCGCTTCATATTCTTCCTCATCATCAT
1 AGCCGCTTCATATTCTTCATCATCATCAT
*
81205608 AGCCTCTTCATATTCTTCATCATCATCAT
1 AGCCGCTTCATATTCTTCATCATCATCAT
81205637 AG
1 AG
81205639 TCATAAACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.23, C:0.32, G:0.07, T:0.38
Consensus pattern (29 bp):
AGCCGCTTCATATTCTTCATCATCATCAT
Found at i:81208051 original size:14 final size:14
Alignment explanation
Indices: 81208034--81208061 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81208024 TACAAAGAAA
81208034 CAAACTCCAAGAGT
1 CAAACTCCAAGAGT
81208048 CAAACTCCAAGAGT
1 CAAACTCCAAGAGT
81208062 TGAAAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.29, G:0.14, T:0.14
Consensus pattern (14 bp):
CAAACTCCAAGAGT
Found at i:81211269 original size:18 final size:18
Alignment explanation
Indices: 81211248--81211284 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
81211238 GGTGTACGGG
* *
81211248 CCACACGGGTGTGTGGGC
1 CCACACGAGTATGTGGGC
81211266 CCACACGAGTATGTGGGC
1 CCACACGAGTATGTGGGC
81211284 C
1 C
81211285 TATTATATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.16, C:0.30, G:0.38, T:0.16
Consensus pattern (18 bp):
CCACACGAGTATGTGGGC
Found at i:81218837 original size:20 final size:20
Alignment explanation
Indices: 81218809--81218855 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
81218799 ATGGAGGTAG
*
81218809 GATTTTGTACATTTGA-ATCT
1 GATTCTGTA-ATTTGATATCT
81218829 GATTCTGTAATTTGATATCT
1 GATTCTGTAATTTGATATCT
*
81218849 GAATCTG
1 GATTCTG
81218856 GATCTGGATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.47
Consensus pattern (20 bp):
GATTCTGTAATTTGATATCT
Found at i:81221499 original size:29 final size:30
Alignment explanation
Indices: 81221444--81221501 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
81221434 TATTTTAGGT
81221444 CCACACGGCCAGACACACAGGCGTGTGGCC
1 CCACACGGCCAGACACACAGGCGTGTGGCC
* * *
81221474 CCACACGGCTAG-CACACGGGCTTGTGGC
1 CCACACGGCCAGACACACAGGCGTGTGGC
81221502 TTAGTTGTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.21, C:0.38, G:0.31, T:0.10
Consensus pattern (30 bp):
CCACACGGCCAGACACACAGGCGTGTGGCC
Found at i:81225812 original size:15 final size:14
Alignment explanation
Indices: 81225794--81225830 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 14
81225784 TATAAAGGTT
81225794 ATAATAATAAAAGCA
1 ATAATAATAAAAG-A
81225809 ATAATAATAAAAGA
1 ATAATAATAAAAGA
81225823 ATGAATAA
1 AT-AATAA
81225831 AGAAATTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 3 0.14
15 18 0.86
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.22
Consensus pattern (14 bp):
ATAATAATAAAAGA
Found at i:81227627 original size:30 final size:30
Alignment explanation
Indices: 81227591--81227648 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
81227581 CTTGTATACT
81227591 ACCATAATAAGTAAGAAATGTAAATTAATA
1 ACCATAATAAGTAAGAAATGTAAATTAATA
*
81227621 ACCATAATAGGTAAGAAATGTAAATTAA
1 ACCATAATAAGTAAGAAATGTAAATTAA
81227649 CTATTAAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.55, C:0.07, G:0.12, T:0.26
Consensus pattern (30 bp):
ACCATAATAAGTAAGAAATGTAAATTAATA
Found at i:81230365 original size:33 final size:33
Alignment explanation
Indices: 81230303--81230369 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
81230293 TCCGTGTATT
* * * *
81230303 TATGGCGTAAAAATCTGTCTGCTTTAGTGGTTA
1 TATGGCATAAAAATCCGTCTACTTCAGTGGTTA
*
81230336 TATGGCATAAACATCCGTCTACTTCAGTGGTTA
1 TATGGCATAAAAATCCGTCTACTTCAGTGGTTA
81230369 T
1 T
81230370 GTGTTCTGTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.37
Consensus pattern (33 bp):
TATGGCATAAAAATCCGTCTACTTCAGTGGTTA
Found at i:81236629 original size:10 final size:10
Alignment explanation
Indices: 81236606--81236658 Score: 56
Period size: 10 Copynumber: 5.3 Consensus size: 10
81236596 TTAGTTTTTC
*
81236606 AAATAATTAAA
1 AAAT-ATTATA
81236617 AAATATTATA
1 AAATATTATA
81236627 AAATATTATA
1 AAATATTATA
*
81236637 AAA-ATTTTA
1 AAATATTATA
81236646 AAA-ATTATTA
1 AAATATTA-TA
81236656 AAA
1 AAA
81236659 ATAATATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
9 11 0.29
10 23 0.61
11 4 0.11
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAATATTATA
Found at i:81236630 original size:21 final size:19
Alignment explanation
Indices: 81236606--81236659 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 19
81236596 TTAGTTTTTC
81236606 AAATAATTAAAAAATATTATA
1 AAAT-ATTAAAAAATATTA-A
*
81236627 AAATATTATAAAAATTTTAA
1 AAATATTA-AAAAATATTAA
81236647 AAATTATTAAAAA
1 AAA-TATTAAAAA
81236660 TAATATTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AAATATTAAAAAATATTAA
Found at i:81236657 original size:19 final size:21
Alignment explanation
Indices: 81236606--81236661 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 21
81236596 TTAGTTTTTC
81236606 AAATAATTA-AAAAATATTATA
1 AAAT-ATTATAAAAATATTATA
81236627 AAATATTATAAAAAT-TT-TA
1 AAATATTATAAAAATATTATA
81236646 AAA-ATTATTAAAAATA
1 AAATATTA-TAAAAATA
81236662 ATATTAATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.12
19 12 0.38
20 6 0.19
21 10 0.31
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
AAATATTATAAAAATATTATA
Found at i:81237066 original size:29 final size:29
Alignment explanation
Indices: 81237031--81237105 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
81237021 AATTAATTTT
*
81237031 TAATTTTAATATTTTTTTGTAATT-TTAAA
1 TAATTTTAATATTTTTTTATAATTCTT-AA
81237060 TAATTTTAATA-TTTTTTATAATTCTTAA
1 TAATTTTAATATTTTTTTATAATTCTTAA
81237088 TAATTTTTAATCATTTTT
1 TAA-TTTTAAT-ATTTTT
81237106 CATAATTACT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
28 16 0.39
29 20 0.49
30 1 0.02
31 4 0.10
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (29 bp):
TAATTTTAATATTTTTTTATAATTCTTAA
Found at i:81237075 original size:19 final size:21
Alignment explanation
Indices: 81237053--81237097 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
81237043 TTTTTTGTAA
81237053 TTTTAAATAATT-TTAAT-AT
1 TTTTAAATAATTCTTAATAAT
*
81237072 TTTT-TATAATTCTTAATAAT
1 TTTTAAATAATTCTTAATAAT
81237092 TTTTAA
1 TTTTAA
81237098 TCATTTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
18 6 0.29
19 9 0.43
20 6 0.29
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTAAATAATTCTTAATAAT
Found at i:81237105 original size:10 final size:10
Alignment explanation
Indices: 81237034--81237112 Score: 72
Period size: 10 Copynumber: 8.1 Consensus size: 10
81237024 TAATTTTTAA
*
81237034 TTTTAATATT
1 TTTTAATAAT
**
81237044 TTTTTGTAAT
1 TTTTAATAAT
*
81237054 TTTAAATAA-
1 TTTTAATAAT
81237063 TTTTAAT-AT
1 TTTTAATAAT
*
81237072 TTTTTATAAT
1 TTTTAATAAT
*
81237082 TCTTAATAAT
1 TTTTAATAAT
*
81237092 TTTTAATCAT
1 TTTTAATAAT
*
81237102 TTTTCATAAT
1 TTTTAATAAT
81237112 T
1 T
81237113 ACTTGAAAAA
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
8 1 0.02
9 12 0.23
10 40 0.75
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:81237202 original size:19 final size:17
Alignment explanation
Indices: 81237174--81237216 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
81237164 TTCAAATAAT
81237174 TATTAAAAAAATTTGTTTA
1 TATT-AAAAAATTT-TTTA
*
81237193 TATTATAAAATTTTTTA
1 TATTAAAAAATTTTTTA
*
81237210 TTTTAAA
1 TATTAAA
81237217 GTTATTTGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 9 0.43
18 8 0.38
19 4 0.19
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (17 bp):
TATTAAAAAATTTTTTA
Found at i:81241810 original size:18 final size:19
Alignment explanation
Indices: 81241777--81241814 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
81241767 AGACTCCAGG
*
81241777 TCTGATTCTTTTCAATCAT
1 TCTGATTCTCTTCAATCAT
81241796 TCTGATT-TCTTCAATCAT
1 TCTGATTCTCTTCAATCAT
81241814 T
1 T
81241815 GCTTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTCTCTTCAATCAT
Found at i:81246295 original size:18 final size:19
Alignment explanation
Indices: 81246262--81246299 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
81246252 AGACTCCAGG
*
81246262 TCTGATTCTTTTCAATCAT
1 TCTGATTCTCTTCAATCAT
81246281 TCTGATT-TCTTCAATCAT
1 TCTGATTCTCTTCAATCAT
81246299 T
1 T
81246300 GCTTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTCTCTTCAATCAT
Found at i:81253253 original size:26 final size:28
Alignment explanation
Indices: 81253199--81253254 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
81253189 CTGACCTCAC
* *
81253199 TATTTTTTTATTATTAAATAAAAGTAAAT
1 TATTTTTTTATGA-TAAATAAAAGCAAAT
81253228 TATTTTTTTATGA-AAATAAAA-CAAAT
1 TATTTTTTTATGATAAATAAAAGCAAAT
81253254 T
1 T
81253255 TTATTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 5 0.20
27 8 0.32
29 12 0.48
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (28 bp):
TATTTTTTTATGATAAATAAAAGCAAAT
Found at i:81258635 original size:17 final size:19
Alignment explanation
Indices: 81258593--81258636 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
81258583 ACGAAATTTT
*
81258593 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
81258612 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
81258630 AA-TATTA
1 AATTATTA
81258637 CTGCATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:81261026 original size:27 final size:27
Alignment explanation
Indices: 81260987--81261115 Score: 86
Period size: 27 Copynumber: 4.5 Consensus size: 27
81260977 ACTTGTAATA
*
81260987 GGGCTACGGCCCAGATTGATACTGATAT
1 GGGCTA-GGCCCAGATTAATACTGATAT
*
81261015 GGGCTAGGCCCA-ATATACTCTGATACT-ATAAG
1 GGGCTAGGCCCAGAT-TA-----ATACTGAT-AT
*
81261047 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTA-GGCCCAGATTAATACTGATAT
*
81261075 GGGCTAAGGCCCA-ATTAACACTGA-AT
1 GGGCT-AGGCCCAGATTAATACTGATAT
81261101 AGGGCTTAGGCCCAG
1 -GGGC-TAGGCCCAG
81261116 TAAAGCTTGA
Statistics
Matches: 81, Mismatches: 6, Indels: 28
0.70 0.05 0.24
Matches are distributed among these distances:
26 4 0.05
27 27 0.33
28 23 0.28
29 3 0.04
31 2 0.02
32 12 0.15
33 8 0.10
34 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (27 bp):
GGGCTAGGCCCAGATTAATACTGATAT
Found at i:81261027 original size:60 final size:59
Alignment explanation
Indices: 81260951--81261089 Score: 156
Period size: 60 Copynumber: 2.3 Consensus size: 59
81260941 AACTATGTTA
* * * *
81260951 ATATGGCCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATATAA-AGGGCTACGGCCCAGATTAATACTG
* * *
81261011 ATATGGGCTAGGCCCAATATACTCTGATACTATAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TATAAAGGGCTACGGCCCAGATTAATACTG
81261071 ATATGGGCTAAGGCCCAAT
1 ATATGGGCT-AGGCCCAAT
81261090 TAACACTGAA
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
59 1 0.01
60 51 0.75
61 16 0.24
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATATAAAGGGCTACGGCCCAGATTAATACTG
Found at i:81262074 original size:49 final size:49
Alignment explanation
Indices: 81262002--81262102 Score: 166
Period size: 49 Copynumber: 2.1 Consensus size: 49
81261992 TCTGTTGATT
*
81262002 GTGAATGCTAGGCATGTATAGGATAGCATAGGTAATTCGTTATCCGTAG
1 GTGAATGCTAGGCAAGTATAGGATAGCATAGGTAATTCGTTATCCGTAG
* * *
81262051 GTGAATGCTAGGCAAGTATAGGATGGGATAGGTAATTGGTTATCCGTAG
1 GTGAATGCTAGGCAAGTATAGGATAGCATAGGTAATTCGTTATCCGTAG
81262100 GTG
1 GTG
81262103 TGGCTGTATG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.28, C:0.10, G:0.33, T:0.30
Consensus pattern (49 bp):
GTGAATGCTAGGCAAGTATAGGATAGCATAGGTAATTCGTTATCCGTAG
Found at i:81264250 original size:5 final size:6
Alignment explanation
Indices: 81264237--81264284 Score: 60
Period size: 6 Copynumber: 7.5 Consensus size: 6
81264227 ATAATTTAAT
*
81264237 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAATTAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA-TAA AAA
81264285 AATATATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.70
7 6 0.16
8 5 0.14
ACGTcount: A:0.77, C:0.04, G:0.00, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:81264381 original size:9 final size:9
Alignment explanation
Indices: 81264305--81264380 Score: 91
Period size: 9 Copynumber: 8.6 Consensus size: 9
81264295 TTTATACAAA
81264305 TAATTCGGT
1 TAATTCGGT
81264314 TAATTCGGT
1 TAATTCGGT
**
81264323 TAATTTAG-
1 TAATTCGGT
*
81264331 TAATTCGGG
1 TAATTCGGT
81264340 TAATTCGGT
1 TAATTCGGT
*
81264349 TAATTCGAT
1 TAATTCGGT
*
81264358 TAATTTGGT
1 TAATTCGGT
*
81264367 TAATTTGGT
1 TAATTCGGT
81264376 TAATT
1 TAATT
81264381 TTATACTTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
8 6 0.10
9 52 0.90
ACGTcount: A:0.26, C:0.07, G:0.20, T:0.47
Consensus pattern (9 bp):
TAATTCGGT
Found at i:81266638 original size:18 final size:18
Alignment explanation
Indices: 81266580--81266639 Score: 52
Period size: 20 Copynumber: 3.3 Consensus size: 18
81266570 AAATATAAAT
81266580 TATTCTATTTATATTT-TA
1 TATT-TATTTATATTTATA
* **
81266598 T-TTTATATATATAAATAA
1 TATTTATTTATATTTAT-A
81266616 TTATTTATTTATATTTATA
1 -TATTTATTTATATTTATA
81266635 TATTT
1 TATTT
81266640 TCTTCGCTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 8 0.25
17 3 0.09
18 7 0.22
19 2 0.06
20 12 0.38
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TATTTATTTATATTTATA
Found at i:81267860 original size:60 final size:58
Alignment explanation
Indices: 81267770--81267919 Score: 164
Period size: 60 Copynumber: 2.6 Consensus size: 58
81267760 TTGGACCAAT
* * * *
81267770 AAAAGTTCAAATCTCGATGTGGAAACAATTACCAAACTTA-GAAGTTAATTTGGACAAAAA
1 AAAAGTTCAAATCTCAATGTGAAAACAATTACCAAACTTATGAA-TTAACTTAGAC--AAA
* ** *
81267830 AAAAGTTCAAATCTCAATGTGAAAATAATTATTAAATTTATGAATTAACTTAGACAAA
1 AAAAGTTCAAATCTCAATGTGAAAACAATTACCAAACTTATGAATTAACTTAGACAAA
81267888 AAAA-TTCAAA-CATCAATGT-AAAACAATTACCA
1 AAAAGTTCAAATC-TCAATGTGAAAACAATTACCA
81267920 TTAAGATTTC
Statistics
Matches: 77, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
56 11 0.14
57 13 0.17
58 7 0.09
60 43 0.56
61 3 0.04
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (58 bp):
AAAAGTTCAAATCTCAATGTGAAAACAATTACCAAACTTATGAATTAACTTAGACAAA
Found at i:81272753 original size:19 final size:18
Alignment explanation
Indices: 81272711--81272747 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
81272701 ATTATTATTC
81272711 TATTTA-AAATAAAATAT
1 TATTTATAAATAAAATAT
81272728 TATTTATAAATAAAA-AT
1 TATTTATAAATAAAATAT
81272745 TAT
1 TAT
81272748 ATTTATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TATTTATAAATAAAATAT
Found at i:81272767 original size:13 final size:13
Alignment explanation
Indices: 81272751--81272776 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81272741 AAATTATATT
81272751 TATTTAATTAAAA
1 TATTTAATTAAAA
81272764 TATTTAATTAAAA
1 TATTTAATTAAAA
81272777 AACTTGGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TATTTAATTAAAA
Found at i:81273346 original size:12 final size:12
Alignment explanation
Indices: 81273325--81273358 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
81273315 TATATATTTT
*
81273325 AAAATTATATAA
1 AAAATAATATAA
81273337 AAAATAATATAA
1 AAAATAATATAA
*
81273349 AAATTAATAT
1 AAAATAATAT
81273359 GGAAGGGGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:81273975 original size:12 final size:13
Alignment explanation
Indices: 81273957--81273995 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
81273947 TAAAACACAT
81273957 AAAAA-TTATAAA
1 AAAAAGTTATAAA
* *
81273969 CAAAATTTATAAA
1 AAAAAGTTATAAA
81273982 AAAAAGTTATAAA
1 AAAAAGTTATAAA
81273995 A
1 A
81273996 TTTTTATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 4 0.17
13 19 0.83
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (13 bp):
AAAAAGTTATAAA
Found at i:81274122 original size:17 final size:17
Alignment explanation
Indices: 81274100--81274134 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
81274090 TTATTTTTAA
81274100 TAAAAAATTTATAACTT
1 TAAAAAATTTATAACTT
81274117 TAAAAAATTTATAACTT
1 TAAAAAATTTATAACTT
81274134 T
1 T
81274135 TATTTATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (17 bp):
TAAAAAATTTATAACTT
Found at i:81274140 original size:22 final size:22
Alignment explanation
Indices: 81274115--81274158 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
81274105 AATTTATAAC
81274115 TTTAAAAAATTTATAACTTTTA
1 TTTAAAAAATTTATAACTTTTA
* ** *
81274137 TTTATAATTTTTATAATTTTTA
1 TTTAAAAAATTTATAACTTTTA
81274159 ATTATTTTTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTAAAAAATTTATAACTTTTA
Found at i:81274149 original size:9 final size:9
Alignment explanation
Indices: 81274137--81274174 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
81274127 ATAACTTTTA
81274137 TTTATAATT
1 TTTATAATT
81274146 TTTATAATT
1 TTTATAATT
*
81274155 TTTAATTATT
1 TTT-ATAATT
81274165 TTTA-AATT
1 TTTATAATT
81274173 TT
1 TT
81274175 AAAAGTGTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
8 5 0.19
9 13 0.50
10 8 0.31
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTATAATT
Found at i:81275742 original size:26 final size:26
Alignment explanation
Indices: 81275683--81275742 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
81275673 TCAATTAATA
* *
81275683 AAGTTCTCTTTGAGTTTTCTTTTTAAG
1 AAGTTTTC-TTGAGTTTTCTTTTAAAG
*
81275710 AATTTTTCTTGAGTTTTCTTTTAAA-
1 AAGTTTTCTTGAGTTTTCTTTTAAAG
81275735 AGAGTTTT
1 A-AGTTTT
81275743 AACAATCTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 1 0.04
26 21 0.75
27 6 0.21
ACGTcount: A:0.22, C:0.08, G:0.13, T:0.57
Consensus pattern (26 bp):
AAGTTTTCTTGAGTTTTCTTTTAAAG
Found at i:81276695 original size:26 final size:26
Alignment explanation
Indices: 81276650--81276699 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
81276640 ACTTTTTCTT
*
81276650 AAAGAAAACTCAAGAGAAATTTTAAA
1 AAAGAAAACTCAAGAAAAATTTTAAA
81276676 AAAGAAAACTCAA-ATAAAATTTTA
1 AAAGAAAACTCAAGA-AAAATTTTA
81276700 TTAATTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.22
Consensus pattern (26 bp):
AAAGAAAACTCAAGAAAAATTTTAAA
Found at i:81279017 original size:63 final size:62
Alignment explanation
Indices: 81278829--81279020 Score: 208
Period size: 63 Copynumber: 3.1 Consensus size: 62
81278819 ACACAGCTGA
* * ** *
81278829 GTAACTCACTATTTT-GAAGTTAGAGTCACA-TGAGCCAGAGACACGGATGTGTGTCTAGGCTGT
1 GTAACTCACT-TTTTGGAA-TTAGAGTCACACAGA-CCAAAGACACGGGCGTGTGTCTAGGCCGT
* * * * * *
81278892 ATAACTCACTATTTGGAATTAGAGTCACACGGGCCAAGGACACGGGCGTGTGTTTAGGCCGT
1 GTAACTCACTTTTTGGAATTAGAGTCACACAGACCAAAGACACGGGCGTGTGTCTAGGCCGT
* * *
81278954 GTAACTCACTGTTTTGGAATTAGAGACACACAGACCAAAGACACGGGCATGTGTCCAGGCCGT
1 GTAACTCACT-TTTTGGAATTAGAGTCACACAGACCAAAGACACGGGCGTGTGTCTAGGCCGT
81279017 GTAA
1 GTAA
81279021 GATATATTTT
Statistics
Matches: 107, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
62 46 0.43
63 61 0.57
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (62 bp):
GTAACTCACTTTTTGGAATTAGAGTCACACAGACCAAAGACACGGGCGTGTGTCTAGGCCGT
Found at i:81279238 original size:108 final size:108
Alignment explanation
Indices: 81279063--81279273 Score: 305
Period size: 108 Copynumber: 2.0 Consensus size: 108
81279053 GTGTTGAACT
* * *
81279063 GTGTGCTAAACCGTGTAACTCAATATTTTGAGCTACATGGGCGTGTGTTAGGACATGTGACAGGT
1 GTGTGCTAAACCGTGTAACTCAATATTTTGAGCCACATGGGCGTGTGTTAGGACATATGACAAGT
* *
81279128 CATGTGCGACACTGAGGTAGGCCACACTGGTATGTGCTGGGTC
66 CATGTACGACACTGAGGTAGGCCACACGGGTATGTGCTGGGTC
* * * * *
81279171 GTGTGCTATACCGTGTAACTCACTGTTTTGAGCCACATGGGCGTGTGTTAGGCCATATGATAAGT
1 GTGTGCTAAACCGTGTAACTCAATATTTTGAGCCACATGGGCGTGTGTTAGGACATATGACAAGT
* * *
81279236 CATGTACGACATTGAGGTAGGCCATACGGGTGTGTGCT
66 CATGTACGACACTGAGGTAGGCCACACGGGTATGTGCT
81279274 AGGCTGTGTG
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
108 90 1.00
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (108 bp):
GTGTGCTAAACCGTGTAACTCAATATTTTGAGCCACATGGGCGTGTGTTAGGACATATGACAAGT
CATGTACGACACTGAGGTAGGCCACACGGGTATGTGCTGGGTC
Found at i:81296587 original size:7 final size:7
Alignment explanation
Indices: 81296571--81296636 Score: 89
Period size: 7 Copynumber: 9.4 Consensus size: 7
81296561 TCCCTTCCTA
*
81296571 TTCCAAT
1 TTCCAGT
81296578 TTCCAGT
1 TTCCAGT
81296585 TTCCAG-
1 TTCCAGT
81296591 TTCCTAGT
1 TTCC-AGT
*
81296599 TTCTAGT
1 TTCCAGT
81296606 TTCCAGT
1 TTCCAGT
81296613 TTCCAGT
1 TTCCAGT
81296620 TTCCAGT
1 TTCCAGT
*
81296627 TTCCATT
1 TTCCAGT
81296634 TTC
1 TTC
81296637 TTTTATTTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
6 4 0.08
7 46 0.87
8 3 0.06
ACGTcount: A:0.15, C:0.27, G:0.11, T:0.47
Consensus pattern (7 bp):
TTCCAGT
Found at i:81299163 original size:22 final size:22
Alignment explanation
Indices: 81299138--81299183 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
81299128 GAGAAAAAGT
81299138 TTTGGGGGAAAAAGTA-AAAATA
1 TTTGGGGGAAAAA-TATAAAATA
*
81299160 TTTGGGGTAAAAATATAAAATA
1 TTTGGGGGAAAAATATAAAATA
81299182 TT
1 TT
81299184 ATAGTTTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.48, C:0.00, G:0.22, T:0.30
Consensus pattern (22 bp):
TTTGGGGGAAAAATATAAAATA
Found at i:81300497 original size:41 final size:41
Alignment explanation
Indices: 81300440--81300521 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
81300430 TTGGTGGAAC
*
81300440 ACTGGTATAATCATAAGGCATCAAGGGTTTCCTAGGACAAT
1 ACTGGTATAATCATAAGGCATCAAGGGTATCCTAGGACAAT
81300481 ACTGGTATAATCATAAGGCATCAAGGGTATCCTAGGACAAT
1 ACTGGTATAATCATAAGGCATCAAGGGTATCCTAGGACAAT
81300522 CATTTGTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (41 bp):
ACTGGTATAATCATAAGGCATCAAGGGTATCCTAGGACAAT
Found at i:81305288 original size:14 final size:15
Alignment explanation
Indices: 81305264--81305292 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
81305254 AGTAAATCTT
81305264 TAATATAAAATATTA
1 TAATATAAAATATTA
81305279 TAATAT-AAATATTA
1 TAATATAAAATATTA
81305293 AAAAAAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATATAAAATATTA
Found at i:81306700 original size:76 final size:80
Alignment explanation
Indices: 81306613--81306839 Score: 214
Period size: 76 Copynumber: 2.8 Consensus size: 80
81306603 AAAGAAAACG
* * * *
81306613 AAATAAATAATATATAAAAAAATTTGAAGTAGATAATA-T-AAAACAA-TTTAAAGTAAATAATA
1 AAATAAATAATATATAAAAAAATTTAAAATAAATAATAGTAAAAACAAGTTTAAAATAAATAATA
**
81306675 TGTAAAACAAATT-A
66 TACAAAACAAATTAA
** ** *
81306689 AAATAAATAATATACGAAGCAATTTAAAATAAATAATATGTAAAAAGAAGTTTAAAATAAATAAT
1 AAATAAATAATATATAAAAAAATTTAAAATAAATAATA-GTAAAAACAAGTTTAAAATAAATAAT
**
81306754 ATACAAAACAGTTTAA
65 ATACAAAACAAATTAA
* **
81306770 AAATAAATGATATATAAAAAAATAATTCAAAATAAATAATA-TATATGAC-AGTTTAAAAATAAA
1 AAATAAATAATATATAAAAAAAT--TT-AAAATAAATAATAGTA-AAAACAAGTTT-AAAATAAA
81306833 TAATATA
61 TAATATA
81306840 TGAAAATTTT
Statistics
Matches: 120, Mismatches: 21, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
76 31 0.26
78 1 0.01
79 6 0.05
80 24 0.20
81 19 0.16
82 7 0.06
83 19 0.16
84 13 0.11
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.29
Consensus pattern (80 bp):
AAATAAATAATATATAAAAAAATTTAAAATAAATAATAGTAAAAACAAGTTTAAAATAAATAATA
TACAAAACAAATTAA
Found at i:81306772 original size:27 final size:26
Alignment explanation
Indices: 81306613--81306960 Score: 227
Period size: 26 Copynumber: 13.4 Consensus size: 26
81306603 AAAGAAAACG
* *
81306613 AAATAAATAATATATAAAAAAATTTG
1 AAATAAATAATATATAAAACAATTTA
* *
81306639 AAGTAGAT-A-ATATAAAACAATTTA
1 AAATAAATAATATATAAAACAATTTA
* * *
81306663 AAGTAAATAATATGTAAAACAAATTA
1 AAATAAATAATATATAAAACAATTTA
** *
81306689 AAATAAATAATATACGAAGCAATTTA
1 AAATAAATAATATATAAAACAATTTA
* *
81306715 AAATAAATAATATGTAAAAAGAAGTTTA
1 AAATAAATAATATAT-AAAACAA-TTTA
* *
81306743 AAATAAATAATATACAAAACAGTTTAA
1 AAATAAATAATATATAAAACAATTT-A
* *
81306770 AAATAAATGATATATAAAAAAATAATTCA
1 AAATAAATAATATATAAAACAAT--TT-A
** *
81306799 AAATAAATAATATATATGACAGTTTAA
1 AAATAAATAATATATAAAACAATTT-A
* *
81306826 AAATAAATAATATATGAAA-ATTTTA
1 AAATAAATAATATATAAAACAATTTA
** * * * *
81306851 AAATGGATAATAGTTTGAAATAGTTT-
1 AAATAAATAATA-TATAAAACAATTTA
* *
81306877 --A-AAAT-ATGTAGAAAAC---TTA
1 AAATAAATAATATATAAAACAATTTA
81306896 AAATAAATAATA-ATAAAACAATTTAA
1 AAATAAATAATATATAAAACAATTT-A
81306922 AAATAAATAATATATGAGAAA-AAGTTTTA
1 AAATAAATAATATAT-A-AAACAA--TTTA
81306951 AAATAAATAA
1 AAATAAATAA
81306961 ATAAATAACA
Statistics
Matches: 249, Mismatches: 50, Indels: 43
0.73 0.15 0.13
Matches are distributed among these distances:
18 2 0.01
21 5 0.02
22 12 0.05
23 4 0.02
24 21 0.08
25 15 0.06
26 78 0.31
27 54 0.22
28 20 0.08
29 35 0.14
30 3 0.01
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (26 bp):
AAATAAATAATATATAAAACAATTTA
Found at i:81306801 original size:29 final size:29
Alignment explanation
Indices: 81306652--81306814 Score: 110
Period size: 28 Copynumber: 5.9 Consensus size: 29
81306642 TAGATAATAT
* * *
81306652 AAAACAATTTAAAGTAAATAATATGT-AA
1 AAAATAATTTAAAATAAATAATATATAAA
* *
81306680 AACA-AA-TTAAAATAAAT-A-ATAT-AC
1 AAAATAATTTAAAATAAATAATATATAAA
* ** *
81306704 GAAGCAATTTAAAATAAATAATATGTAAA
1 AAAATAATTTAAAATAAATAATATATAAA
* * *
81306733 AAGA-AGTTTAAAATAAATAATATACAAA
1 AAAATAATTTAAAATAAATAATATATAAA
* * * *
81306761 ACAGT--TTAAAAATAAATGATATATAAA
1 AAAATAATTTAAAATAAATAATATATAAA
*
81306788 AAAATAATTCAAAATAAATAATATATA
1 AAAATAATTTAAAATAAATAATATATA
81306815 TGACAGTTTA
Statistics
Matches: 102, Mismatches: 25, Indels: 15
0.72 0.18 0.11
Matches are distributed among these distances:
24 5 0.05
25 3 0.03
26 21 0.21
27 25 0.25
28 28 0.27
29 20 0.20
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.28
Consensus pattern (29 bp):
AAAATAATTTAAAATAAATAATATATAAA
Found at i:81306811 original size:56 final size:53
Alignment explanation
Indices: 81306613--81306845 Score: 222
Period size: 56 Copynumber: 4.4 Consensus size: 53
81306603 AAAGAAAACG
* * * *
81306613 AAATAAATAATATAT-AAAAAAATTTGAAGTAGATAATAT--AAAACAATTTA
1 AAATAAATAATATATAAAAAAAAATTAAAATAAATAATATACAAAACAATTTA
* * * * *
81306663 AAGTAAATAATATGT-AAAACAAATTAAAATAAATAATATACGAAGCAATTTA
1 AAATAAATAATATATAAAAAAAAATTAAAATAAATAATATACAAAACAATTTA
* ** *
81306715 AAATAAATAATATGTAAAAAGAAGTTTAAAATAAATAATATACAAAACAGTTTAA
1 AAATAAATAATATATAAAAA-AAAATTAAAATAAATAATATACAAAACAATTT-A
* * ** *
81306770 AAATAAATGATATATAAAAAAATAATTCAAAATAAATAATATATATGACAGTTTAA
1 AAATAAATAATATATAAAAAAA-AATT-AAAATAAATAATATACAAAACAATTT-A
*
81306826 AAATAAATAATATATGAAAA
1 AAATAAATAATATATAAAAA
81306846 TTTTAAAATG
Statistics
Matches: 151, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
50 32 0.21
52 23 0.15
53 4 0.03
54 28 0.19
55 21 0.14
56 43 0.28
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.28
Consensus pattern (53 bp):
AAATAAATAATATATAAAAAAAAATTAAAATAAATAATATACAAAACAATTTA
Found at i:81306954 original size:29 final size:26
Alignment explanation
Indices: 81306893--81306987 Score: 86
Period size: 29 Copynumber: 3.4 Consensus size: 26
81306883 TGTAGAAAAC
81306893 TTAAAATAAATAATAATAAAACAATT
1 TTAAAATAAATAATAATAAAACAATT
*
81306919 TAAAAATAAATAATATATGAGAAA-AAGTT
1 TTAAAATAAATAATA-AT-A-AAACAA-TT
*
81306948 TTAAAATAAATAAATAAATAACAA-ATTT
1 TTAAAATAAAT-AAT-AATAA-AACAATT
81306976 TTGAAAATAAAT
1 TT-AAAATAAAT
81306988 TGAAATCAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
26 14 0.24
27 2 0.03
28 8 0.14
29 28 0.48
30 5 0.09
31 1 0.02
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (26 bp):
TTAAAATAAATAATAATAAAACAATT
Found at i:81319513 original size:46 final size:46
Alignment explanation
Indices: 81319461--81320424 Score: 1705
Period size: 46 Copynumber: 21.0 Consensus size: 46
81319451 GCTTTCTAAA
81319461 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
* *
81319507 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
* * *
81319553 ATAAAATGTGCAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
*
81319599 ATAAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
81319645 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
81319691 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
81319737 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
81319783 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
81319829 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
81319875 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
81319921 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
81319967 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
81320013 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
81320059 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
81320105 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
81320151 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
81320197 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
*
81320243 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
* * ** * *
81320289 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
*** * * *
81320335 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
* * * *
81320381 A-GAAAATGAGTAAGACCATAGTTGAAAGACACAATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATG
81320425 TCAAAGATAA
Statistics
Matches: 889, Mismatches: 28, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
45 1 0.00
46 888 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
Found at i:81320726 original size:16 final size:17
Alignment explanation
Indices: 81320705--81320737 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81320695 ATGATGGAGC
81320705 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
81320721 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
81320738 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:81330578 original size:7 final size:7
Alignment explanation
Indices: 81330566--81330590 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
81330556 TCAAACGTTG
81330566 TTTCCAT
1 TTTCCAT
81330573 TTTCCAT
1 TTTCCAT
81330580 TTTCCAT
1 TTTCCAT
81330587 TTTC
1 TTTC
81330591 ATTGTATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (7 bp):
TTTCCAT
Found at i:81341324 original size:10 final size:11
Alignment explanation
Indices: 81341294--81341326 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
81341284 CGGCCCACCC
81341294 ATATTAATTTT
1 ATATTAATTTT
81341305 ATATTAATTTT
1 ATATTAATTTT
81341316 ATA-TAATTTT
1 ATATTAATTTT
81341326 A
1 A
81341327 AAAAATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
ATATTAATTTT
Found at i:81341350 original size:18 final size:18
Alignment explanation
Indices: 81341327--81341371 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
81341317 TATAATTTTA
*
81341327 AAAAATATATAAACCATC
1 AAAAATATATAAAACATC
81341345 AAAAATACTA-AAAACATC
1 AAAAATA-TATAAAACATC
81341363 AAAAA-ATAT
1 AAAAATATAT
81341372 TTCTCAACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 2 0.08
17 1 0.04
18 19 0.79
19 2 0.08
ACGTcount: A:0.67, C:0.13, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATATATAAAACATC
Found at i:81341484 original size:30 final size:29
Alignment explanation
Indices: 81341450--81341506 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
81341440 TTTAACAAGC
*
81341450 AAATGCCTCTAAAATAGTAACAAAATTAGA
1 AAATGCCTCTAAAATAATAA-AAAATTAGA
* *
81341480 AAATGTCTTTAAAATAATAAAAAATTA
1 AAATGCCTCTAAAATAATAAAAAATTA
81341507 ACAATAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.56, C:0.09, G:0.07, T:0.28
Consensus pattern (29 bp):
AAATGCCTCTAAAATAATAAAAAATTAGA
Found at i:81347380 original size:6 final size:6
Alignment explanation
Indices: 81347371--81347399 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
81347361 ATTTCAGTAA
81347371 CAGTTT CAGTTT CAGTTT CAGTTT CAGTT
1 CAGTTT CAGTTT CAGTTT CAGTTT CAGTT
81347400 AGGGCCTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.48
Consensus pattern (6 bp):
CAGTTT
Found at i:81347385 original size:18 final size:18
Alignment explanation
Indices: 81347362--81347399 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
81347352 TTTAAGCCCA
81347362 TTTCAGTAACAGTTTCAG
1 TTTCAGTAACAGTTTCAG
**
81347380 TTTCAGTTTCAGTTTCAG
1 TTTCAGTAACAGTTTCAG
81347398 TT
1 TT
81347400 AGGGCCTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.47
Consensus pattern (18 bp):
TTTCAGTAACAGTTTCAG
Found at i:81347478 original size:18 final size:19
Alignment explanation
Indices: 81347455--81347493 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
81347445 CTTGGCCTAT
* *
81347455 TACAGTATCA-ATATTCAG
1 TACAGTAACAGATATACAG
81347473 TACAGTAACAGATATACAG
1 TACAGTAACAGATATACAG
81347492 TA
1 TA
81347494 TCAAATCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.28
Consensus pattern (19 bp):
TACAGTAACAGATATACAG
Found at i:81358927 original size:23 final size:21
Alignment explanation
Indices: 81358900--81358941 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
81358890 ATGAATTAGA
81358900 ATGTTGAAATGTTATGTTTAAAT
1 ATGTTGAAATG--ATGTTTAAAT
*
81358923 ATGTTTAAATGATGTTTAA
1 ATGTTGAAATGATGTTTAA
81358942 GTCTCTTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
23 10 0.56
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.48
Consensus pattern (21 bp):
ATGTTGAAATGATGTTTAAAT
Found at i:81358939 original size:11 final size:10
Alignment explanation
Indices: 81358912--81358941 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
81358902 GTTGAAATGT
81358912 TATGTTTAAA
1 TATGTTTAAA
81358922 TATGTTTAAA
1 TATGTTTAAA
81358932 TGATGTTTAA
1 T-ATGTTTAA
81358942 GTCTCTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.58
11 8 0.42
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (10 bp):
TATGTTTAAA
Found at i:81359836 original size:12 final size:12
Alignment explanation
Indices: 81359819--81359844 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
81359809 ATATATTTTA
81359819 ATATTTTAAGGT
1 ATATTTTAAGGT
81359831 ATATTTTAAGGT
1 ATATTTTAAGGT
81359843 AT
1 AT
81359845 TTGGAATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (12 bp):
ATATTTTAAGGT
Found at i:81360379 original size:20 final size:20
Alignment explanation
Indices: 81360324--81360380 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
81360314 TGCTCCTAAC
*
81360324 AGTACCTTC-GTACTCCTGTT
1 AGTA-CTTCTGTACTCCTGAT
* *
81360344 AGTA-TTATTGTGCTCCTGAT
1 AGTACTT-CTGTACTCCTGAT
81360364 AGTACTTCTGTACTCCT
1 AGTACTTCTGTACTCCT
81360381 ATTAGCACTG
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
18 2 0.07
20 25 0.86
21 2 0.07
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.42
Consensus pattern (20 bp):
AGTACTTCTGTACTCCTGAT
Found at i:81366251 original size:15 final size:14
Alignment explanation
Indices: 81366219--81366259 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
81366209 TTATATTTTT
81366219 TAAAAAAATT-ATA
1 TAAAAAAATTAATA
*
81366232 T-AAAAATTTAATA
1 TAAAAAAATTAATA
81366245 TAAAAAAATTAATA
1 TAAAAAAATTAATA
81366259 T
1 T
81366260 GGGTCGGGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 7 0.29
13 5 0.21
14 12 0.50
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
TAAAAAAATTAATA
Found at i:81366485 original size:17 final size:17
Alignment explanation
Indices: 81366463--81366497 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
81366453 TTATAAAATT
* *
81366463 ATCTTTTAAAATTTAAA
1 ATCTTTAAAAATATAAA
81366480 ATCTTTAAAAATATAAA
1 ATCTTTAAAAATATAAA
81366497 A
1 A
81366498 ATGTAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (17 bp):
ATCTTTAAAAATATAAA
Found at i:81366905 original size:35 final size:35
Alignment explanation
Indices: 81366866--81366965 Score: 132
Period size: 35 Copynumber: 2.9 Consensus size: 35
81366856 GTCAAAGTCG
* *
81366866 ACCTTAAAGAGGTTGGGATAGACCCGTCTAA-GACA
1 ACCTTAAAAAGGTTGGGATAGACACGTCTAAGGA-A
* * *
81366901 ACCTTAAAAAGGTTGGGACAAACTCGTCTAAGGAA
1 ACCTTAAAAAGGTTGGGATAGACACGTCTAAGGAA
81366936 ACCTTAAAAAGGTTGGGATAGA-ACGTCTAA
1 ACCTTAAAAAGGTTGGGATAGACACGTCTAA
81366966 TAGGGTAGAC
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
34 7 0.12
35 48 0.84
36 2 0.04
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (35 bp):
ACCTTAAAAAGGTTGGGATAGACACGTCTAAGGAA
Found at i:81368521 original size:13 final size:13
Alignment explanation
Indices: 81368503--81368527 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81368493 TATGATCTTA
81368503 AATCTTCCATGCG
1 AATCTTCCATGCG
81368516 AATCTTCCATGC
1 AATCTTCCATGC
81368528 TAAGCTACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.32, G:0.12, T:0.32
Consensus pattern (13 bp):
AATCTTCCATGCG
Found at i:81369048 original size:16 final size:15
Alignment explanation
Indices: 81369016--81369055 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
81369006 TTCTTTTTCA
*
81369016 TTTTAATCCTTGATT
1 TTTTTATCCTTGATT
81369031 TTTTTATCCTTGATT
1 TTTTTATCCTTGATT
81369046 TTTTTATCCT
1 TTTTTATCCT
81369056 AATCAATACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.15, C:0.15, G:0.05, T:0.65
Consensus pattern (15 bp):
TTTTTATCCTTGATT
Found at i:81370394 original size:20 final size:20
Alignment explanation
Indices: 81370369--81370438 Score: 94
Period size: 19 Copynumber: 3.7 Consensus size: 20
81370359 ATTATAAAAT
81370369 AATTCAAAATAATTTTTAAA
1 AATTCAAAATAATTTTTAAA
81370389 AATTCAAAATAATTTTT-AA
1 AATTCAAAATAATTTTTAAA
* *
81370408 AATTGAAAAT-ATTTATAAA
1 AATTCAAAATAATTTTTAAA
81370427 AATT-AAAA-AATT
1 AATTCAAAATAATT
81370439 GGAATAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
18 12 0.26
19 17 0.37
20 17 0.37
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (20 bp):
AATTCAAAATAATTTTTAAA
Found at i:81370409 original size:19 final size:19
Alignment explanation
Indices: 81370369--81370427 Score: 84
Period size: 20 Copynumber: 3.1 Consensus size: 19
81370359 ATTATAAAAT
81370369 AATTCAAAATAATTTTTAAA
1 AATTCAAAATAATTTTT-AA
81370389 AATTCAAAATAATTTTTAA
1 AATTCAAAATAATTTTTAA
* *
81370408 AATTGAAAAT-ATTTATAA
1 AATTCAAAATAATTTTTAA
81370426 AA
1 AA
81370428 ATTAAAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.24
19 11 0.30
20 17 0.46
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (19 bp):
AATTCAAAATAATTTTTAA
Found at i:81372896 original size:22 final size:22
Alignment explanation
Indices: 81372871--81372917 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
81372861 ACTTATAGGT
*
81372871 TTGACTCAATTGGGTTGGCAAG
1 TTGACTCAATTGGGGTGGCAAG
81372893 TTGACTCAATTGGGGTGGCAAG
1 TTGACTCAATTGGGGTGGCAAG
81372915 TTG
1 TTG
81372918 GCTATTCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.13, G:0.34, T:0.32
Consensus pattern (22 bp):
TTGACTCAATTGGGGTGGCAAG
Found at i:81379254 original size:3 final size:3
Alignment explanation
Indices: 81379246--81379292 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
81379236 ATTTATTTGT
81379246 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
81379293 CTTTTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:81382870 original size:44 final size:44
Alignment explanation
Indices: 81382807--81382894 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
81382797 ATTACATGTA
* * * * * *
81382807 TCGCATCCATTATGAACTCAGACCAATTTAACGAGTTCGGATGC
1 TCGCATCCATAATGAACTCAAACCAACTCAACGAGCTCAGATGC
81382851 TCGCATCCATAATGAACTCAAACCAACTCAACGAGCTCAGATGC
1 TCGCATCCATAATGAACTCAAACCAACTCAACGAGCTCAGATGC
81382895 CTCATATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCAAACCAACTCAACGAGCTCAGATGC
Found at i:81384892 original size:31 final size:31
Alignment explanation
Indices: 81384857--81384918 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
81384847 AATATAAGAC
81384857 TAAATCAACCACAACATGACAATTAAATACA
1 TAAATCAACCACAACATGACAATTAAATACA
81384888 TAAATCAACCACAACATGACAATTAAATACA
1 TAAATCAACCACAACATGACAATTAAATACA
81384919 AATCTCATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.55, C:0.23, G:0.03, T:0.19
Consensus pattern (31 bp):
TAAATCAACCACAACATGACAATTAAATACA
Found at i:81385718 original size:49 final size:48
Alignment explanation
Indices: 81385558--81385832 Score: 213
Period size: 49 Copynumber: 5.7 Consensus size: 48
81385548 AGGGTATGAT
* * * * * *
81385558 GTCGATGTCATGTTCCAAACATGGTCTTACACTGACTCTCAC-ATCTAA
1 GTCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCACTATATAG
* ** *
81385606 GTCAATGCCATG-CACCAGACAGGTCTTACACTAACT-TCCAC-ACATAAG
1 GTCGATGCCATGTC-CCAGACAGGTCTTACACTGGCTCT-CACTATAT-AG
* * **
81385654 GCCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCACTTATATTT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCAC-TATATAG
* *
81385703 GTCGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGCA-TATCTTGAG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCT-CACTAT-AT-AG
* * * * *
81385752 GCCGATGCCGTGTCCCAGATAGGTCTTACACTGGCTCTCA-TCTATCG
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTATATAG
*
81385799 GTGCTGATGCCATGTCCCAGATAGGTCTTACACT
1 GT-C-GATGCCATGTCCCAGACAGGTCTTACACT
81385833 AGCACACACA
Statistics
Matches: 183, Mismatches: 31, Indels: 25
0.77 0.13 0.10
Matches are distributed among these distances:
46 1 0.01
47 24 0.13
48 53 0.29
49 101 0.55
50 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCACTATATAG
Found at i:81385780 original size:98 final size:96
Alignment explanation
Indices: 81385560--81385835 Score: 306
Period size: 98 Copynumber: 2.8 Consensus size: 96
81385550 GGTATGATGT
* * * * *
81385560 CGATGTCATGTTCCAAACATGGTCTTACACTGACTCTCAC-ATCTAAGTCAATGCCATG-CACCA
1 CGATGCCATGTCCCAAACA-GGTCTTACACTGGCTCTCACTATATAAGTCGATGCCATGTC-CCA
*
81385623 GACAGGTCTTACACTAACTTCCACACATAAGGC
64 GACAGGTCTTACACTAGCTTCCACACATAAGGC
**
81385656 CGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCACTTATATTTGTCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCAC-TATATAAGTCGATGCCATGTCCCAG
* * * *
81385721 ACAGGTCTTACACTAGCTTGCATATCTTGAGGC
65 ACAGGTCTTACACTAGCTTCCACA-CATAAGGC
* * * * **
81385754 CGATGCCGTGTCCCAGATAGGTCTTACACTGGCTCTCA-TCTATCGGTGCTGATGCCATGTCCCA
1 CGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCACTATATAAGT-C-GATGCCATGTCCCA
*
81385818 GATAGGTCTTACACTAGC
64 GACAGGTCTTACACTAGC
81385836 ACACACATCA
Statistics
Matches: 155, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
95 19 0.12
96 23 0.15
97 40 0.26
98 73 0.47
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCACTATATAAGTCGATGCCATGTCCCAGA
CAGGTCTTACACTAGCTTCCACACATAAGGC
Found at i:81387878 original size:20 final size:21
Alignment explanation
Indices: 81387853--81387894 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
81387843 AATATGCTGT
*
81387853 AAAATGAAAG-TTTTTGATAG
1 AAAATGAAAGATTATTGATAG
81387873 AAAATGAAAGATTATTGATAG
1 AAAATGAAAGATTATTGATAG
81387894 A
1 A
81387895 TAAACCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (21 bp):
AAAATGAAAGATTATTGATAG
Found at i:81388678 original size:33 final size:33
Alignment explanation
Indices: 81388575--81388690 Score: 110
Period size: 33 Copynumber: 3.5 Consensus size: 33
81388565 ACCCAAAATG
* ** * * *
81388575 GTACAACTTGAAAAGGTTATGTACACTTTTTGT
1 GTACCACTTGAAAAGGAAAGGTATACTTTGTGT
** *
81388608 GTA-CACTTGAAAAGGTTAGGTATACTTTGTAT
1 GTACCACTTGAAAAGGAAAGGTATACTTTGTGT
*
81388640 ATACCA-TATGAAAAGGAAAGGTATACTTTGTGT
1 GTACCACT-TGAAAAGGAAAGGTATACTTTGTGT
*
81388673 GTACCACTTGGAAAGGAA
1 GTACCACTTGAAAAGGAA
81388691 TGCACACCTC
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
32 27 0.39
33 41 0.59
34 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (33 bp):
GTACCACTTGAAAAGGAAAGGTATACTTTGTGT
Found at i:81396185 original size:49 final size:49
Alignment explanation
Indices: 81395935--81396254 Score: 207
Period size: 49 Copynumber: 6.7 Consensus size: 49
81395925 GTACGATGCC
* * * **
81395935 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCA-A-ATCTAAGTTA
1 GATGCCATGTCCCAAACA-GGTCTTACACTAGCTCTCATATATC-GAGGCA
* * * * ** *
81395984 -ATGCCATGTCCTAGACAGGTTTTACACTAACT-TCCATACGTCGAGGCT
1 GATGCCATGTCCCAAACAGGTCTTACACTAGCTCT-CATATATCGAGGCA
* * * * * *
81396032 GATGCCATGTCTCAGACAGGTCTTACACTGGTTCTCACT-TATCTATGTC-
1 GATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCA-TATATCGA-GGCA
* * * * * *
81396081 GATGCCATGTCCCAGACAGGTCTTACACTGGCACACCT-TA---AGCCA
1 GATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATATATCGAGGCA
* * *
81396126 -ATGCCATGTCCCAAACATGTCTTACACTAGCT-TGCATATCTTGAGGCA
1 GATGCCATGTCCCAAACAGGTCTTACACTAGCTCT-CATATATCGAGGCA
* * * *
81396174 GATGCCGTGTCCCAAACAGGTCTTACACT-GACTCTCATCTATCGATGCC
1 GATGCCATGTCCCAAACAGGTCTTACACTAG-CTCTCATATATCGAGGCA
81396223 GATGCCATGTCCCAAACAGGTCTTACACTAGC
1 GATGCCATGTCCCAAACAGGTCTTACACTAGC
81396255 ACATACATCA
Statistics
Matches: 211, Mismatches: 43, Indels: 34
0.73 0.15 0.12
Matches are distributed among these distances:
44 32 0.15
45 2 0.01
46 1 0.00
47 14 0.07
48 25 0.12
49 131 0.62
50 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAAACAGGTCTTACACTAGCTCTCATATATCGAGGCA
Found at i:81396242 original size:142 final size:143
Alignment explanation
Indices: 81395928--81396257 Score: 387
Period size: 142 Copynumber: 2.3 Consensus size: 143
81395918 ACATAGGGTA
* * **
81395928 CGATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAAATCTAAGTTAATGCCATGT
1 CGATGCCGATGCCATGTCCCAAACA-GGTCTTACACTGG--CACAAATCTAAGCCAATGCCATGT
* * * * * *
81395993 CCTAGACAGGTTTTACACTAACTTCCATACGTCGAGGCTGATGCCATGTCTCAGACAGGTCTTAC
63 CCCAAACAGGTCTTACACTAACTTCCATACGTCGAGGCAGATGCCATGTCCCAAACAGGTCTTAC
**
81396058 ACTGGTTCTCACTTAT
128 ACTGACTCTCACTTAT
* * * **
81396074 CTATGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCACACCT-TAAGCCAATGCCATGTCCC
1 CGATGCCGATGCCATGTCCCAAACAGGTCTTACACTGGCACAAATCTAAGCCAATGCCATGTCCC
* * * * *
81396138 AAACATGTCTTACACTAGCTTGCATATC-TTGAGGCAGATGCCGTGTCCCAAACAGGTCTTACAC
66 AAACAGGTCTTACACTAACTTCCATA-CGTCGAGGCAGATGCCATGTCCCAAACAGGTCTTACAC
81396202 TGACTCTCA-TCTAT
130 TGACTCTCACT-TAT
*
81396216 CGATGCCGATGCCATGTCCCAAACAGGTCTTACACTAGCACA
1 CGATGCCGATGCCATGTCCCAAACAGGTCTTACACTGGCACA
81396258 TACATCACCC
Statistics
Matches: 156, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
141 1 0.01
142 116 0.74
143 5 0.03
145 13 0.08
146 21 0.13
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (143 bp):
CGATGCCGATGCCATGTCCCAAACAGGTCTTACACTGGCACAAATCTAAGCCAATGCCATGTCCC
AAACAGGTCTTACACTAACTTCCATACGTCGAGGCAGATGCCATGTCCCAAACAGGTCTTACACT
GACTCTCACTTAT
Found at i:81397346 original size:180 final size:179
Alignment explanation
Indices: 81396986--81397349 Score: 613
Period size: 180 Copynumber: 2.0 Consensus size: 179
81396976 ACCACCAAAA
* *
81396986 TCACTTACTTGCAAGGGTGAAGAGTTGCTAAAATTTCAAGCTTTCAAAACCCTTATTTTGGTAAA
1 TCACTTACTTGCAAGGGTGAAGAGTTGCTAAAATTTCAAGCTTCCAAAACCCTTATTTTGCTAAA
*
81397051 AATTGGTGGAGAGGAGGAAAATGAAAGGTGATATCCTTTTCTCTTTATTTTATTTTATTTTATTT
66 AATTGGTGGAGAGAAGGAAAATGAAAGGTGATATCCTTTTCTC----TTTTATTTTATTTTATTT
*
81397116 CAAGTCAAATTAGTCACCAAATTTTAGCTAACCTTTGACCATTTCATTTTCTT
127 CAAGTCAAATTAGTCACCAAATTTCAGCTAACCTTTGACCATTTCATTTTCTT
*
81397169 TCACTTACTTGCAAGGGTGAAGAGTTGCTGAAATTTCAAGCTTCCAAAACCCTTATTTTGCTAAA
1 TCACTTACTTGCAAGGGTGAAGAGTTGCTAAAATTTCAAGCTTCCAAAACCCTTATTTTGCTAAA
81397234 AATTTCGGTGGAGAGAAGGAAAATGAAAGGTGATATCCTTTTCTC-TTTATTTTATTTTATTTCA
66 AA-TT-GGTGGAGAGAAGGAAAATGAAAGGTGATATCCTTTTCTCTTTTATTTTATTTTATTTCA
*
81397298 AGTTAAATTAGTCACCAAATTTCAGCTAACCTTTGACCATTTCATTTTCTT
129 AGTCAAATTAGTCACCAAATTTCAGCTAACCTTTGACCATTTCATTTTCTT
81397349 T
1 T
81397350 ATCTCTATGG
Statistics
Matches: 173, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
180 69 0.40
183 64 0.37
184 2 0.01
185 38 0.22
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (179 bp):
TCACTTACTTGCAAGGGTGAAGAGTTGCTAAAATTTCAAGCTTCCAAAACCCTTATTTTGCTAAA
AATTGGTGGAGAGAAGGAAAATGAAAGGTGATATCCTTTTCTCTTTTATTTTATTTTATTTCAAG
TCAAATTAGTCACCAAATTTCAGCTAACCTTTGACCATTTCATTTTCTT
Done.