Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 250 of 279
Found at i:81399879 original size:24 final size:24
Alignment explanation
Indices: 81399847--81399907 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
81399837 AAAATCCAAT
* * *
81399847 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTATAAT-TA
81399871 GCACTATGTGTGCGAGTATAATTA
1 GCACTATGTGTGCGAGTATAATTA
81399895 GCACTATGTGTGC
1 GCACTATGTGTGC
81399908 AAATTTGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTATAATTA
Found at i:81402407 original size:10 final size:9
Alignment explanation
Indices: 81402371--81402491 Score: 83
Period size: 10 Copynumber: 13.4 Consensus size: 9
81402361 ATTTTATTTG
81402371 AAAATTA-A
1 AAAATTATA
81402379 AATAATTATA
1 AA-AATTATA
*
81402389 TAAATTTATA
1 -AAAATTATA
81402399 AAAACTTATA
1 AAAA-TTATA
*
81402409 AAAATTCTAAA
1 AAAA-T-TATA
*
81402420 AAAATTCTA
1 AAAATTATA
81402429 ATAAATTATA
1 A-AAATTATA
81402439 AAAA-TATA
1 AAAATTATA
*
81402447 AATATTA-A
1 AAAATTATA
81402455 AAAATTAT-
1 AAAATTATA
*
81402463 -AAATTATT
1 AAAATTATA
*
81402471 AATA-TATA
1 AAAATTATA
*
81402479 TAAATTATA
1 AAAATTATA
81402488 AAAA
1 AAAA
81402492 AAATCATTTA
Statistics
Matches: 88, Mismatches: 14, Indels: 21
0.72 0.11 0.17
Matches are distributed among these distances:
7 7 0.08
8 21 0.24
9 25 0.28
10 26 0.30
11 9 0.10
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (9 bp):
AAAATTATA
Found at i:81402413 original size:38 final size:34
Alignment explanation
Indices: 81402371--81402491 Score: 102
Period size: 32 Copynumber: 3.4 Consensus size: 34
81402361 ATTTTATTTG
81402371 AAAATTAAAATAATTATATAAATTTATAAAAACTTATA
1 AAAATTAAAA-AATTATATAAA-TTATAAAAA--TATA
*
81402409 AAAATTCTAAAAAAATTCTAATAAATTATAAAAATATA
1 AAAA-T-T-AAAAAATTAT-ATAAATTATAAAAATATA
* * *
81402447 AATATTAAAAAA-T-TATAAATTATTAATATATA
1 AAAATTAAAAAATTATATAAATTATAAAAATATA
*
81402479 TAAATTATAAAAA
1 AAAATTA-AAAAA
81402492 AAATCATTTA
Statistics
Matches: 72, Mismatches: 6, Indels: 15
0.77 0.06 0.16
Matches are distributed among these distances:
32 21 0.29
33 6 0.08
34 1 0.01
35 6 0.08
36 1 0.01
37 1 0.01
38 11 0.15
39 1 0.01
40 15 0.21
41 9 0.12
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (34 bp):
AAAATTAAAAAATTATATAAATTATAAAAATATA
Found at i:81402458 original size:17 final size:18
Alignment explanation
Indices: 81402433--81402495 Score: 67
Period size: 17 Copynumber: 3.6 Consensus size: 18
81402423 ATTCTAATAA
*
81402433 ATTATAAAAATATAAA-T
1 ATTAAAAAAATATAAATT
*
81402450 ATTAAAAAATTATAAATT
1 ATTAAAAAAATATAAATT
* *
81402468 ATT-AATATATATAAATT
1 ATTAAAAAAATATAAATT
*
81402485 ATAAAAAAAAT
1 ATTAAAAAAAT
81402496 CATTTATTGA
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
17 27 0.75
18 9 0.25
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATTAAAAAAATATAAATT
Found at i:81402493 original size:36 final size:36
Alignment explanation
Indices: 81402405--81402496 Score: 93
Period size: 34 Copynumber: 2.6 Consensus size: 36
81402395 TATAAAAACT
* * *
81402405 TATAAAAATTCTAAAAAAATTCTAATAAATTATAAA
1 TATATAAATTATAAAAAAAATCTAATAAATTATAAA
* *
81402441 AATATAAA-TAT-TAAAAAAT-T-ATAAATTATTAATA
1 TATATAAATTATAAAAAAAATCTAATAAATTA-TAA-A
81402475 TATATAAATTATAAAAAAAATC
1 TATATAAATTATAAAAAAAATC
81402497 ATTTATTGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
32 8 0.18
33 4 0.09
34 14 0.32
35 5 0.11
36 13 0.30
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (36 bp):
TATATAAATTATAAAAAAAATCTAATAAATTATAAA
Found at i:81402957 original size:11 final size:10
Alignment explanation
Indices: 81402932--81402973 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
81402922 AATTTATTAG
*
81402932 AATTTCTATA
1 AATTTTTATA
81402942 AATTTTTATGA
1 AATTTTTAT-A
81402953 AATTTTTA-A
1 AATTTTTATA
81402962 TAATTTTTATA
1 -AATTTTTATA
81402973 A
1 A
81402974 GTTCATATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
9 1 0.04
10 17 0.61
11 10 0.36
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (10 bp):
AATTTTTATA
Found at i:81402957 original size:21 final size:21
Alignment explanation
Indices: 81402920--81402971 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
81402910 GATAAATTTG
81402920 ATAATTTATTA-G-AATTTCT-
1 ATAATTT-TTATGAAATTTCTA
*
81402939 ATAAATTTTTATGAAATTTTTA
1 AT-AATTTTTATGAAATTTCTA
81402961 ATAATTTTTAT
1 ATAATTTTTAT
81402972 AAGTTCATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
19 5 0.18
20 6 0.21
21 15 0.54
22 2 0.07
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (21 bp):
ATAATTTTTATGAAATTTCTA
Found at i:81409282 original size:22 final size:22
Alignment explanation
Indices: 81409235--81409282 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
81409225 GAAGCAAAGG
*
81409235 GACAAAGGCGTGCCAACAAGCC
1 GACAAAGGCGTGCCAACAAGCA
*
81409257 GACAAAGGCGTGCCAACAGGCA
1 GACAAAGGCGTGCCAACAAGCA
81409279 GACA
1 GACA
81409283 GGAATAAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.29, G:0.29, T:0.04
Consensus pattern (22 bp):
GACAAAGGCGTGCCAACAAGCA
Found at i:81419660 original size:3 final size:3
Alignment explanation
Indices: 81419652--81419686 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
81419642 GAAATGTTGA
*
81419652 ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
81419687 AATATATGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:81421178 original size:34 final size:35
Alignment explanation
Indices: 81421072--81421214 Score: 146
Period size: 35 Copynumber: 4.1 Consensus size: 35
81421062 ATGCCTTAAT
* *
81421072 TAAAGGCAACCTTAAAAAGGTTGGGATAGACCCGTC
1 TAAA-GCAATCTTAAAAAGGTTGGGATAGACACGTC
* *
81421108 T-AAGACAATCTTAAAAAGGTTGGGATATACTCGTC
1 TAAAG-CAATCTTAAAAAGGTTGGGATAGACACGTC
* * *
81421143 TAAAGTAATCTTAAAAA-GTTAGGATAGACAAGTC
1 TAAAGCAATCTTAAAAAGGTTGGGATAGACACGTC
* * * * *
81421177 TAAGGCAACCTCAAAAAGTTTGGGATAGACACATC
1 TAAAGCAATCTTAAAAAGGTTGGGATAGACACGTC
81421212 TAA
1 TAA
81421215 TAGGGTAGAT
Statistics
Matches: 88, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
34 27 0.31
35 57 0.65
36 4 0.05
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (35 bp):
TAAAGCAATCTTAAAAAGGTTGGGATAGACACGTC
Found at i:81421214 original size:69 final size:70
Alignment explanation
Indices: 81421082--81421214 Score: 169
Period size: 69 Copynumber: 1.9 Consensus size: 70
81421072 TAAAGGCAAC
* ** * * * * *
81421082 CTTAAAAAGGTTGGGATAGACCCGTCTAAGACAATCTTAAAAAGGTTGGGATATACTCGTCTAAA
1 CTTAAAAAGGTTAGGATAGACAAGTCTAAGACAACCTCAAAAAGGTTGGGATAGACACATCTAAA
81421147 GTAAT
66 GTAAT
* *
81421152 CTTAAAAA-GTTAGGATAGACAAGTCTAAGGCAACCTCAAAAAGTTTGGGATAGACACATCTAA
1 CTTAAAAAGGTTAGGATAGACAAGTCTAAGACAACCTCAAAAAGGTTGGGATAGACACATCTAA
81421215 TAGGGTAGAT
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
69 45 0.85
70 8 0.15
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (70 bp):
CTTAAAAAGGTTAGGATAGACAAGTCTAAGACAACCTCAAAAAGGTTGGGATAGACACATCTAAA
GTAAT
Found at i:81424714 original size:22 final size:22
Alignment explanation
Indices: 81424686--81424744 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
81424676 TAAAGTTATC
* *
81424686 ATGTCTCAAGACAAATGGGTGT
1 ATGTCTCAAGACAAAAGGGTAT
81424708 ATGTCTCAAGACAAAAGGGTAT
1 ATGTCTCAAGACAAAAGGGTAT
*
81424730 ATTTCTCAAGACAAA
1 ATGTCTCAAGACAAA
81424745 GTCTAATATC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.25
Consensus pattern (22 bp):
ATGTCTCAAGACAAAAGGGTAT
Found at i:81424753 original size:22 final size:21
Alignment explanation
Indices: 81424689--81424764 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 21
81424679 AGTTATCATG
* * *
81424689 TCTCAAGACAAATGGGTGTATG
1 TCTCAAGACAAA-GGCTATATC
* *
81424711 TCTCAAGACAAAAGGGTATATT
1 TCTCAAGAC-AAAGGCTATATC
*
81424733 TCTCAAGACAAAGTCTAATATC
1 TCTCAAGACAAAGGCT-ATATC
*
81424755 TCTCGAGACA
1 TCTCAAGACA
81424765 TGGCCCTGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 5 0.11
22 38 0.83
23 3 0.07
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (21 bp):
TCTCAAGACAAAGGCTATATC
Found at i:81426303 original size:3 final size:3
Alignment explanation
Indices: 81426295--81426500 Score: 61
Period size: 3 Copynumber: 69.7 Consensus size: 3
81426285 ATTGGACATT
* * * *
81426295 TTA TTA TTA TT- TTA ATA ATA TTA TTG TT- GTA TTCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
* * * * * *
81426339 TATG TTA CTA TTA TGT- TCA TTA TTT TTA CTT- TTA TTA TTC TTT TTA
1 T-TA TTA TTA TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
** * * * * * *
81426385 TTA AGA TTA TTT TTA CTA TTA TT- TTT TTA -TA CTA TAA TTA TTC TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * ** * * *
81426431 TTA ATA -TA TTA TT- TTC TCC CTA TTA TTA TTA -TA TCA TTA TTA TTC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
81426476 TTA TTGA TGTA TTA TTA TTT TTA TT
1 TTA TT-A T-TA TTA TTA TTA TTA TT
81426501 TTTGTTACAT
Statistics
Matches: 146, Mismatches: 42, Indels: 30
0.67 0.19 0.14
Matches are distributed among these distances:
2 15 0.10
3 118 0.81
4 12 0.08
5 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:81426471 original size:17 final size:17
Alignment explanation
Indices: 81426451--81426494 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
81426441 ATTTTCTCCC
81426451 TATTATTATTATATCAT-
1 TATTATTATTAT-TCATG
* *
81426468 TATTATTCTTATTGATG
1 TATTATTATTATTCATG
81426485 TATTATTATT
1 TATTATTATT
81426495 TTTATTTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (17 bp):
TATTATTATTATTCATG
Found at i:81426474 original size:20 final size:20
Alignment explanation
Indices: 81426451--81426500 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
81426441 ATTTTCTCCC
81426451 TATTATTATT-ATATCATTAT
1 TATTATTATTGATAT-ATTAT
* *
81426471 TATTCTTATTGATGTATTAT
1 TATTATTATTGATATATTAT
*
81426491 TATTTTTATT
1 TATTATTATT
81426501 TTTGTTACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 23 0.88
21 3 0.12
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.64
Consensus pattern (20 bp):
TATTATTATTGATATATTAT
Found at i:81432544 original size:14 final size:14
Alignment explanation
Indices: 81432525--81432551 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81432515 ATTGGTTTAT
81432525 TTATAATTTAGTCC
1 TTATAATTTAGTCC
81432539 TTATAATTTAGTC
1 TTATAATTTAGTC
81432552 ATTAGCTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (14 bp):
TTATAATTTAGTCC
Found at i:81436510 original size:12 final size:12
Alignment explanation
Indices: 81436497--81436534 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
81436487 AAATAGGCTA
81436497 AAAAATAA-AAT
1 AAAAATAATAAT
81436508 AAAAATAATAAT
1 AAAAATAATAAT
*
81436520 AATAATAATAAT
1 AAAAATAATAAT
81436532 AAA
1 AAA
81436535 GGGTCCTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAAATAATAAT
Found at i:81436519 original size:3 final size:3
Alignment explanation
Indices: 81436500--81436533 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
81436490 TAGGCTAAAA
*
81436500 AAT AA- AAT AAA AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
81436534 AGGGTCCTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:81451814 original size:14 final size:13
Alignment explanation
Indices: 81451795--81451834 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
81451785 AANAAATTTG
81451795 TAAATCATTATTAT
1 TAAATCA-TATTAT
*
81451809 TAAATCATATTTT
1 TAAATCATATTAT
*
81451822 TAACTCATATTAT
1 TAAATCATATTAT
81451835 ATACACATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 16 0.70
14 7 0.30
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (13 bp):
TAAATCATATTAT
Found at i:81451824 original size:13 final size:13
Alignment explanation
Indices: 81451790--81451832 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
81451780 CCTGTAANAA
*
81451790 ATTTGTAAATCATT
1 ATTTTTAAATCA-T
*
81451804 ATTATTAAATCAT
1 ATTTTTAAATCAT
*
81451817 ATTTTTAACTCAT
1 ATTTTTAAATCAT
81451830 ATT
1 ATT
81451833 ATATACACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.37, C:0.09, G:0.02, T:0.51
Consensus pattern (13 bp):
ATTTTTAAATCAT
Found at i:81452007 original size:22 final size:22
Alignment explanation
Indices: 81451972--81452022 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
81451962 TTTTAAACCA
81451972 ATATATTTTATTATTATATAATT
1 ATATATTTTATTATTATAT-ATT
*
81451995 AT-TATTTTTTTATTATATATT
1 ATATATTTTATTATTATATATT
81452016 ATATATT
1 ATATATT
81452023 AAATACTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 5 0.19
22 19 0.73
23 2 0.08
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (22 bp):
ATATATTTTATTATTATATATT
Found at i:81452032 original size:24 final size:24
Alignment explanation
Indices: 81452005--81452051 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
81451995 ATTATTTTTT
*
81452005 TATTAT-ATATTATATATTAAATAC
1 TATTATAAAATTAT-TATTAAATAC
*
81452029 TATTTTAAAATTATTATTAAATA
1 TATTATAAAATTATTATTAAATA
81452052 TCATATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
TATTATAAAATTATTATTAAATAC
Found at i:81452048 original size:12 final size:13
Alignment explanation
Indices: 81452004--81452052 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
81451994 TATTATTTTT
*
81452004 TTATTATATATTA
1 TTATTAAATATTA
*
81452017 TATATTAAATACTA
1 T-TATTAAATATTA
81452031 TT-TTAAA-ATTA
1 TTATTAAATATTA
81452042 TTATTAAATAT
1 TTATTAAATAT
81452053 CATATTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.17
12 10 0.33
13 4 0.13
14 11 0.37
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (13 bp):
TTATTAAATATTA
Found at i:81456507 original size:14 final size:14
Alignment explanation
Indices: 81456488--81456514 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81456478 CTATTCTCTA
81456488 GGCATTCTCAATTG
1 GGCATTCTCAATTG
81456502 GGCATTCTCAATT
1 GGCATTCTCAATT
81456515 AAGGTCATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (14 bp):
GGCATTCTCAATTG
Found at i:81459890 original size:21 final size:21
Alignment explanation
Indices: 81459864--81459904 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
81459854 ATCTGCTCAA
*
81459864 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTTTGGAGTAC
81459885 ACTCCACCTGCTTTGGAGTA
1 ACTCCACCTGCTTTGGAGTA
81459905 TTGCTCGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.32
Consensus pattern (21 bp):
ACTCCACCTGCTTTGGAGTAC
Found at i:81466909 original size:51 final size:51
Alignment explanation
Indices: 81466854--81467069 Score: 335
Period size: 51 Copynumber: 4.3 Consensus size: 51
81466844 CTGATCACAT
81466854 TTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * * *
81466905 TTATCACTTGTCACTGATCAGACAAGTGTAGCTACA-CTACCACTTATCAT
1 TTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
81466955 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * *
81467006 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* *
81467057 TTGTCACTGATCA
1 TTATCACTTATCA
81467070 GAAGTACTCA
Statistics
Matches: 152, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
50 47 0.31
51 105 0.69
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (51 bp):
TTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:81466970 original size:101 final size:102
Alignment explanation
Indices: 81466851--81467069 Score: 350
Period size: 101 Copynumber: 2.2 Consensus size: 102
81466841 ACACTGATCA
*
81466851 CATTTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTGT
1 CATTTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTAT
81466916 CACTGATCAGACAAGTGTAGCT-ACACTACCACTTAT
66 CACTGATCAGACAAGTGTAGCTGACACTACCACTTAT
* *
81466952 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCACTTAT
1 CATTTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTAT
* **
81467017 CACTGATCAGATAAGTGTAGCTGAGGCTACCACTTAT
66 CACTGATCAGACAAGTGTAGCTGACACTACCACTTAT
* * *
81467054 CACTTGTCACTGATCA
1 CATTTATCACTTATCA
81467070 GAAGTACTCA
Statistics
Matches: 107, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
101 83 0.78
102 24 0.22
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (102 bp):
CATTTATCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTATCACTTAT
CACTGATCAGACAAGTGTAGCTGACACTACCACTTAT
Found at i:81468576 original size:49 final size:48
Alignment explanation
Indices: 81468501--81468601 Score: 175
Period size: 49 Copynumber: 2.1 Consensus size: 48
81468491 TATTAAGTAA
* *
81468501 ATTTTGCAATATTCCAATTTTTCCCTTAATTCATCAATTTTCCTGCTG
1 ATTTTGCAATATTCCAATTTTGCCCTTAATTCATCAATTCTCCTGCTG
81468549 ANTTTTGCAATATTCCAATTTTGCCCTTAATTCATCAATTCTCCTGCTG
1 A-TTTTGCAATATTCCAATTTTGCCCTTAATTCATCAATTCTCCTGCTG
81468598 ATTT
1 ATTT
81468602 CATGCACCTT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
48 4 0.08
49 46 0.92
ACGTcount: A:0.23, C:0.23, G:0.07, T:0.47
Consensus pattern (48 bp):
ATTTTGCAATATTCCAATTTTGCCCTTAATTCATCAATTCTCCTGCTG
Found at i:81476175 original size:81 final size:81
Alignment explanation
Indices: 81476083--81476244 Score: 324
Period size: 81 Copynumber: 2.0 Consensus size: 81
81476073 AGTACCATTT
81476083 AAAAAAAATCATCTTTTGCATTATTTATTTAAAATTTATTTCATTAGTTTAAATTGTTTTCATGT
1 AAAAAAAATCATCTTTTGCATTATTTATTTAAAATTTATTTCATTAGTTTAAATTGTTTTCATGT
81476148 ACCCTTCAAATTTCCA
66 ACCCTTCAAATTTCCA
81476164 AAAAAAAATCATCTTTTGCATTATTTATTTAAAATTTATTTCATTAGTTTAAATTGTTTTCATGT
1 AAAAAAAATCATCTTTTGCATTATTTATTTAAAATTTATTTCATTAGTTTAAATTGTTTTCATGT
81476229 ACCCTTCAAATTTCCA
66 ACCCTTCAAATTTCCA
81476245 TTCATTTATT
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 81 1.00
ACGTcount: A:0.35, C:0.14, G:0.05, T:0.47
Consensus pattern (81 bp):
AAAAAAAATCATCTTTTGCATTATTTATTTAAAATTTATTTCATTAGTTTAAATTGTTTTCATGT
ACCCTTCAAATTTCCA
Found at i:81480216 original size:19 final size:20
Alignment explanation
Indices: 81480189--81480231 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
81480179 TCTTTTTGCA
* *
81480189 TTCATTCATTTGCATTACAT
1 TTCATTCATGTGCATTAAAT
81480209 TTCA-TCATGTGCATTAAAT
1 TTCATTCATGTGCATTAAAT
81480228 TTCA
1 TTCA
81480232 CGAAAAGACC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.47
Consensus pattern (20 bp):
TTCATTCATGTGCATTAAAT
Found at i:81487574 original size:14 final size:14
Alignment explanation
Indices: 81487555--81487583 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81487545 GGGCATGCGG
81487555 CAGTTTTGTCTTCT
1 CAGTTTTGTCTTCT
81487569 CAGTTTTGTCTTCT
1 CAGTTTTGTCTTCT
81487583 C
1 C
81487584 TGAATTAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.24, G:0.14, T:0.55
Consensus pattern (14 bp):
CAGTTTTGTCTTCT
Found at i:81488579 original size:87 final size:87
Alignment explanation
Indices: 81488424--81488897 Score: 722
Period size: 87 Copynumber: 5.4 Consensus size: 87
81488414 NNNNNNNNNA
* *
81488424 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATA-GG---TAACAGC
1 AATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGCCTTAAC--C
*
81488485 CCTCTAAGCAGTAGGGTAACAAGCTG
63 CC-CTAAGCAGTAGGGTAACAGGCTG
*
81488511 AATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAATAGATCGAAGACGAAGGGCCTTAACCCCC
1 AATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAACCCCC
*
81488576 TAAGTAGTAGGGTAACAGGCTG
66 TAAGCAGTAGGGTAACAGGCTG
* * *
81488598 AATTTACAGATTTTAGCTCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAGCCCC
1 AATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAACCCCC
81488663 TAAGCAGTAGGGTAACAGGCTG
66 TAAGCAGTAGGGTAACAGGCTG
*
81488685 AATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAATAGATCGAAGACGAAGGGCCTTAACCCCC
1 AATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAACCCCC
*
81488750 TAAGTAGTAGGGTAACAGGCTG
66 TAAGCAGTAGGGTAACAGGCTG
* * *
81488772 AATTTACAGATTTTAGCTCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAGCCCC
1 AATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAACCCCC
81488837 TAAGCAGTAGGGTAACAGGCTG
66 TAAGCAGTAGGGTAACAGGCTG
* * * * *
81488859 AATTTACAAATCTTAACCCTCTAAGTAGTAGGGTAACAG
1 AATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAACAG
81488898 GCTGGAAATC
Statistics
Matches: 356, Mismatches: 27, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
86 1 0.00
87 348 0.98
88 3 0.01
90 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (87 bp):
AATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAACCCCC
TAAGCAGTAGGGTAACAGGCTG
Found at i:81488585 original size:44 final size:44
Alignment explanation
Indices: 81488435--81488854 Score: 232
Period size: 44 Copynumber: 9.6 Consensus size: 44
81488425 ATTTACAGAT
*
81488435 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATA-GG-
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGC
* * * **
81488478 --TAACAGCCCTCTAAGCAGTAGGGTAACA-AGCTGAATTTAC--A-GAT
1 CTTAAC--CCC-CTAAGCAGTAGGGAAACAGATC-GAA--GACGAAGGGC
* *
81488522 CTTAGCCCCCTAAGCAGTAGGGAAATAGATCGAAGACGAAGGGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGC
* * * * **
81488566 CTTAACCCCCTAAGTAGTAGGGTAACAG-GCTGAATTTAC--A-GAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAA--GACGAAGGGC
* * *
81488609 TTTAGCTCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGC
* * * * **
81488653 CTTAAGCCCCTAAGCAGTAGGGTAACAG-GCTGAATTTAC--A-GAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAA--GACGAAGGGC
* *
81488696 CTTAGCCCCCTAAGCAGTAGGGAAATAGATCGAAGACGAAGGGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGC
* * * * **
81488740 CTTAACCCCCTAAGTAGTAGGGTAACAG-GCTGAATTTAC--A-GAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAA--GACGAAGGGC
* * *
81488783 TTTAGCTCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGC
* *
81488827 CTTAAGCCCCTAAGCAGTAGGGTAACAG
1 CTTAACCCCCTAAGCAGTAGGGAAACAG
81488855 GCTGAATTTA
Statistics
Matches: 275, Mismatches: 68, Indels: 67
0.67 0.17 0.16
Matches are distributed among these distances:
41 12 0.04
43 115 0.42
44 138 0.50
46 10 0.04
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.19
Consensus pattern (44 bp):
CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGC
Found at i:81488714 original size:174 final size:174
Alignment explanation
Indices: 81488424--81488891 Score: 798
Period size: 174 Copynumber: 2.7 Consensus size: 174
81488414 NNNNNNNNNA
* * * * *
81488424 AATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATA-GG--TAACAGCC
1 AATTTACAGATTTTAGCTCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGCCTTA-AGCC
*
81488486 CTCTAAGCAGTAGGGTAACAAGCTGAATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAATAGA
64 C-CTAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAATAGA
81488551 TCGAAGACGAAGGGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTG
128 TCGAAGACGAAGGGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTG
81488598 AATTTACAGATTTTAGCTCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAGCCCC
1 AATTTACAGATTTTAGCTCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAGCCCC
81488663 TAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAATAGATCG
66 TAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAATAGATCG
81488728 AAGACGAAGGGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTG
131 AAGACGAAGGGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTG
81488772 AATTTACAGATTTTAGCTCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAGCCCC
1 AATTTACAGATTTTAGCTCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAGCCCC
* * * *
81488837 TAAGCAGTAGGGTAACAGGCTGAATTTACAAATCTTAACCCTCTAAGTAGTAGGG
66 TAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAGCCCCCTAAGCAGTAGGG
81488892 TAACAGGCTG
Statistics
Matches: 281, Mismatches: 10, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
173 1 0.00
174 273 0.97
175 5 0.02
176 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (174 bp):
AATTTACAGATTTTAGCTCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGCCTTAAGCCCC
TAAGCAGTAGGGTAACAGGCTGAATTTACAGATCTTAGCCCCCTAAGCAGTAGGGAAATAGATCG
AAGACGAAGGGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTG
Found at i:81493256 original size:206 final size:206
Alignment explanation
Indices: 81492976--81493943 Score: 1846
Period size: 206 Copynumber: 4.7 Consensus size: 206
81492966 AAATCTGCTT
81492976 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCAGGGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCAGGGTAAGCAC
81493041 GCAAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GCAAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
81493106 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
81493171 GAGATGCCAAA
196 GAGATGCCAAA
81493182 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCAGGGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCAGGGTAAGCAC
81493247 GCAAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GCAAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
81493312 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
81493377 GAGATGCCAAA
196 GAGATGCCAAA
81493388 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCAGGGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCAGGGTAAGCAC
81493453 GCAAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GCAAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
81493518 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
81493583 GAGATGCCAAA
196 GAGATGCCAAA
81493594 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCAGGGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCAGGGTAAGCAC
81493659 GCAAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GCAAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
81493724 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
81493789 GAGATGCCAAA
196 GAGATGCCAAA
* **
81493800 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCAGGGTAAGCAC
** * * *
81493865 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCAAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
81493930 GGATTTTGCTTCAG
131 GGA-TCTGCTTCAG
81493944 CCAGATCTGC
Statistics
Matches: 752, Mismatches: 9, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
206 743 0.99
207 9 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGATTTGCTTCAGGGTAAGCAC
GCAAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
GAGATGCCAAA
Found at i:81501622 original size:10 final size:10
Alignment explanation
Indices: 81501607--81501662 Score: 51
Period size: 10 Copynumber: 5.4 Consensus size: 10
81501597 TCCTCTTATC
81501607 CAAATTCTCT
1 CAAATTCTCT
81501617 CAAATTCT-T
1 CAAATTCTCT
*
81501626 CCAAAAATTCTCC
1 -C--AAATTCTCT
*
81501639 CATATTCTCT
1 CAAATTCTCT
*
81501649 CAAATTTTCT
1 CAAATTCTCT
81501659 CAAA
1 CAAA
81501663 GCTCTCTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
9 1 0.03
10 28 0.76
12 8 0.22
ACGTcount: A:0.34, C:0.29, G:0.00, T:0.38
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:81501864 original size:48 final size:49
Alignment explanation
Indices: 81501812--81501910 Score: 146
Period size: 49 Copynumber: 2.0 Consensus size: 49
81501802 AGTGATAATT
**
81501812 TTAATATTTCAATAGTATTTAATA-TCTTTTTAATTTATGCAATTTTAA
1 TTAATATTTCAATACAATTTAATATTCTTTTTAATTTATGCAATTTTAA
* * *
81501860 TTAATTTTTCAATACAATTTAATATTTTTTTTCATTTATGCAATTTTAA
1 TTAATATTTCAATACAATTTAATATTCTTTTTAATTTATGCAATTTTAA
81501909 TT
1 TT
81501911 TTAATTTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
48 21 0.47
49 24 0.53
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (49 bp):
TTAATATTTCAATACAATTTAATATTCTTTTTAATTTATGCAATTTTAA
Found at i:81502868 original size:7 final size:7
Alignment explanation
Indices: 81502858--81502894 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
81502848 TCGTTTCGTG
81502858 TTTAGTA
1 TTTAGTA
*
81502865 TTTAATA
1 TTTAGTA
81502872 TTTAGTA
1 TTTAGTA
81502879 TTTAGTA
1 TTTAGTA
81502886 TTTAGTA
1 TTTAGTA
81502893 TT
1 TT
81502895 ATGTATACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (7 bp):
TTTAGTA
Found at i:81503546 original size:16 final size:18
Alignment explanation
Indices: 81503511--81503552 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
81503501 GCCAAGTACG
*
81503511 TATCCTAGCCCTTATATA
1 TATCCTAACCCTTATATA
81503529 TATCCTAACCCTTATATA
1 TATCCTAACCCTTATATA
*
81503547 TTTCCT
1 TATCCT
81503553 TTTTCTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.26, C:0.29, G:0.02, T:0.43
Consensus pattern (18 bp):
TATCCTAACCCTTATATA
Found at i:81504014 original size:56 final size:56
Alignment explanation
Indices: 81503949--81504086 Score: 231
Period size: 56 Copynumber: 2.5 Consensus size: 56
81503939 TTCTTTCATT
81503949 TAATAAAATAAAAGTTATTTTTAATATCTTAATTATAATTTACTCTTTTATATTTG
1 TAATAAAATAAAAGTTATTTTTAATATCTTAATTATAATTTACTCTTTTATATTTG
* *
81504005 TAATAAAATAAAAGTTATTTTTAGTATTTTAATTATAATTTACTCTTTTATATTTG
1 TAATAAAATAAAAGTTATTTTTAATATCTTAATTATAATTTACTCTTTTATATTTG
* * *
81504061 TAATAGAATAAAAGTTGTTTTGAATA
1 TAATAAAATAAAAGTTATTTTTAATA
81504087 AGGAAATATT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 76 1.00
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.50
Consensus pattern (56 bp):
TAATAAAATAAAAGTTATTTTTAATATCTTAATTATAATTTACTCTTTTATATTTG
Found at i:81507321 original size:125 final size:125
Alignment explanation
Indices: 81507057--81507443 Score: 467
Period size: 126 Copynumber: 3.1 Consensus size: 125
81507047 GGAACTACTG
* * * * * *
81507057 TAGAAAAAGAGCATCCACGTGTGAGCTTTTTTCAGTAATTTTGCTGAAAGTGCATACTGCATGAA
1 TAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTGAA
* * * *
81507122 GCGTTTTTGACACTATTTGTTCAGAAAGGTCATCTCACAATTATTTTTTCAGATACCACTA
66 GCGTTTTT-ACACTATTTCTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATACCACTA
** * * * * *
81507183 TATCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTCCTGACAGTGCATCCTGCTTAAA
1 TAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTGAA
81507248 GCGTTTTTACACTATTT-TTCCAGAAACGTCTTCTCAAAATTATTTTCTT-AGATACCACTA
66 GCGTTTTTACACTATTTCTT-CAGAAACGTCTTCTCAAAATTATTTT-TTCAGATACCACTA
* * *
81507308 TAGAAAAAAAGCGTCCACATGAGAGCATTTTTCAGTAATTTTGTTGACAGTGCATCCTGCTTGAA
1 TAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTGAA
* * * * *
81507373 GCGTTTTGGATACTATTTCTTCAGAAACTTCTTCTTAAAATT-TTTTTTCCAGATACTACTGA
66 GCGTTTT-TACACTATTTCTTCAGAAACGTCTTCTCAAAATTATTTTTT-CAGATACCACT-A
81507435 -AGAAAAAAA
1 TAGAAAAAAA
81507444 AACCAAAAAA
Statistics
Matches: 226, Mismatches: 28, Indels: 14
0.84 0.10 0.05
Matches are distributed among these distances:
124 4 0.02
125 109 0.48
126 110 0.49
127 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (125 bp):
TAGAAAAAAAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTGAA
GCGTTTTTACACTATTTCTTCAGAAACGTCTTCTCAAAATTATTTTTTCAGATACCACTA
Found at i:81507633 original size:19 final size:17
Alignment explanation
Indices: 81507609--81507643 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
81507599 TTTAATTAAC
81507609 TAAACCCTTACAAAAACCA
1 TAAACCC-TA-AAAAACCA
81507628 TAAACCCTAAAAAACC
1 TAAACCCTAAAAAACC
81507644 CTCACACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 2 0.12
19 7 0.44
ACGTcount: A:0.54, C:0.31, G:0.00, T:0.14
Consensus pattern (17 bp):
TAAACCCTAAAAAACCA
Found at i:81508438 original size:26 final size:26
Alignment explanation
Indices: 81508404--81508459 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
81508394 TTGATAAAAT
81508404 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
81508430 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
81508456 TGAT
1 TGAT
81508460 GGGCATTTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:81511566 original size:29 final size:30
Alignment explanation
Indices: 81511524--81511587 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
81511514 TTTTTTTTGA
* *
81511524 ATTTTTAAAAAATTTTACAACTTT-T-AAT
1 ATTTTAAAAAAATTTTAAAACTTTCTAAAT
*
81511552 ATTTTAAAATAAATTTTAAAATTTTCTAAAT
1 ATTTTAAAA-AAATTTTAAAACTTTCTAAAT
81511583 ATTTT
1 ATTTT
81511588 TTACTAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 8 0.27
29 13 0.43
30 1 0.03
31 8 0.27
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.52
Consensus pattern (30 bp):
ATTTTAAAAAAATTTTAAAACTTTCTAAAT
Found at i:81511705 original size:20 final size:20
Alignment explanation
Indices: 81511682--81511722 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
81511672 TAATGCATGG
81511682 TCAACATGCCATGTCACCAA
1 TCAACATGCCATGTCACCAA
* *
81511702 TCAACTTGCCATGTCATCAA
1 TCAACATGCCATGTCACCAA
81511722 T
1 T
81511723 GACATGGTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.32, G:0.10, T:0.27
Consensus pattern (20 bp):
TCAACATGCCATGTCACCAA
Found at i:81516427 original size:42 final size:39
Alignment explanation
Indices: 81516308--81516428 Score: 120
Period size: 41 Copynumber: 2.9 Consensus size: 39
81516298 GTGGTTATAA
81516308 ATATTTTATTGTTAATAATATT-TTAATTCTAAAAATTTG
1 ATATTTTATTGTTAATAATATTATTAATT-TAAAAATTTG
**
81516347 ATATTTTTTATTGTTAATAATATTCATTTAAAGT-AAAATTGTG
1 ATA--TTTTATTGTTAATAATATT-A-TTAATTTAAAAATT-TG
* *
81516390 ATATTTTCATTGCTAATAACATTATCTAATTTAAAAATT
1 ATATTTT-ATTGTTAATAATATTAT-TAATTTAAAAATT
81516429 ATGGAATAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
39 3 0.04
40 1 0.01
41 28 0.42
42 25 0.37
43 6 0.09
44 4 0.06
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.50
Consensus pattern (39 bp):
ATATTTTATTGTTAATAATATTATTAATTTAAAAATTTG
Found at i:81516541 original size:16 final size:16
Alignment explanation
Indices: 81516520--81516555 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
81516510 TAGGATTTTC
81516520 AAAT-AAATGAAAAATA
1 AAATAAAAT-AAAAATA
81516536 AAATAAAATAAAAATA
1 AAATAAAATAAAAATA
81516552 AAAT
1 AAAT
81516556 TTCAATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (16 bp):
AAATAAAATAAAAATA
Found at i:81518125 original size:10 final size:9
Alignment explanation
Indices: 81518105--81518177 Score: 60
Period size: 10 Copynumber: 7.8 Consensus size: 9
81518095 TTAGGAGTAG
81518105 ATTTAAGTTT
1 ATTTAA-TTT
81518115 ATTTCAATTT
1 ATTT-AATTT
*
81518125 ATTTAGTTT
1 ATTTAATTT
*
81518134 A-TTAATAT
1 ATTTAATTT
81518142 ATTTCAATTT
1 ATTT-AATTT
*
81518152 ATTTAGTTT
1 ATTTAATTT
81518161 A-TTAATATT
1 ATTTAAT-TT
81518170 ATTATAAT
1 ATT-TAAT
81518178 CTTCCTTCCA
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
8 10 0.20
9 15 0.29
10 20 0.39
11 6 0.12
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.59
Consensus pattern (9 bp):
ATTTAATTT
Found at i:81518144 original size:27 final size:27
Alignment explanation
Indices: 81518114--81518168 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
81518104 GATTTAAGTT
81518114 TATTTCAATTTATTTAGTTTATTAATA
1 TATTTCAATTTATTTAGTTTATTAATA
81518141 TATTTCAATTTATTTAGTTTATTAATA
1 TATTTCAATTTATTTAGTTTATTAATA
81518168 T
1 T
81518169 TATTATAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.60
Consensus pattern (27 bp):
TATTTCAATTTATTTAGTTTATTAATA
Found at i:81531528 original size:16 final size:16
Alignment explanation
Indices: 81531507--81531550 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
81531497 ATACAAAGTA
*
81531507 AAAGAAATAAAAAAAG
1 AAAGAAAGAAAAAAAG
*
81531523 AAAGAAAGAAAAAGAG
1 AAAGAAAGAAAAAAAG
*
81531539 AATAGAATGAAA
1 AA-AGAAAGAAA
81531551 CGAAACAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 16 0.67
17 8 0.33
ACGTcount: A:0.75, C:0.00, G:0.18, T:0.07
Consensus pattern (16 bp):
AAAGAAAGAAAAAAAG
Found at i:81531565 original size:20 final size:19
Alignment explanation
Indices: 81531507--81531565 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
81531497 ATACAAAGTA
*
81531507 AAAGAAATAAAAAAAGAAAG
1 AAAGAAA-AAGAAAAGAAAG
*
81531527 AAAGAAAAAGAGAATAGAATG
1 AAAGAAAAAGA-AA-AGAAAG
*
81531548 AAACGAAACAGAAAAGAA
1 AAA-GAAAAAGAAAAGAA
81531566 CAGGGGAGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.09
20 13 0.39
21 10 0.30
22 7 0.21
ACGTcount: A:0.73, C:0.03, G:0.19, T:0.05
Consensus pattern (19 bp):
AAAGAAAAAGAAAAGAAAG
Found at i:81532592 original size:17 final size:18
Alignment explanation
Indices: 81532506--81532599 Score: 68
Period size: 18 Copynumber: 5.3 Consensus size: 18
81532496 TCAATAACTG
*
81532506 TTACTGAATAACTGACTA
1 TTACTGAATAACTGATTA
* *
81532524 CTACTGAATAATTGATTGA
1 TTACTGAATAACTGATT-A
* ***
81532543 -TATTGAATAAAC-GACCG
1 TTACTGAAT-AACTGATTA
81532560 TTACTGAATAACTGATTA
1 TTACTGAATAACTGATTA
* *
81532578 TTACTG-ATGACTGATTG
1 TTACTGAATAACTGATTA
81532595 TTACT
1 TTACT
81532600 AAACAATAAA
Statistics
Matches: 58, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
17 17 0.29
18 38 0.66
19 3 0.05
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (18 bp):
TTACTGAATAACTGATTA
Found at i:81537133 original size:98 final size:98
Alignment explanation
Indices: 81537015--81537418 Score: 749
Period size: 98 Copynumber: 4.1 Consensus size: 98
81537005 TGATATATAT
81537015 ATATATATATTATAAATCCTATCATTCTCTTTAATTATATTTAAGGGTATACGTGAATTTCACAA
1 ATATATATATTATAAATCCTATCATTCTCTTTAATTATATTTAAGGGTATACGTGAATTTCACAA
81537080 TTTTAACTTTTTATATATATTTTTGCTTTTTAA
66 TTTTAACTTTTTATATATATTTTTGCTTTTTAA
81537113 ATATATATATTATAAATCCTATCATTCTCTTTAATTATATTTAAGGGTATACGTGAATTTCACAA
1 ATATATATATTATAAATCCTATCATTCTCTTTAATTATATTTAAGGGTATACGTGAATTTCACAA
81537178 TTTTAACTTTTTATATATATTTTTGCTTTTTAA
66 TTTTAACTTTTTATATATATTTTTGCTTTTTAA
81537211 ATATATATATTATAAATCCTATCATTCTCTTTAATTATATTTAAGGGTATACGTGAATTTCACAA
1 ATATATATATTATAAATCCTATCATTCTCTTTAATTATATTTAAGGGTATACGTGAATTTCACAA
81537276 TTTTAACTTTTTATATATATTTTTGCTTTTTAA
66 TTTTAACTTTTTATATATATTTTTGCTTTTTAA
81537309 ATATATATATTATAAATCCTATCATTCTCTTTAATTATATTTAAGGGTAT-CTGTGAATTTCA-A
1 ATATATATATTATAAATCCTATCATTCTCTTTAATTATATTTAAGGGTATAC-GTGAATTTCACA
*
81537372 ATTTTTAACTTTTTATATATTTTTTTGCTTTTTAA
65 A-TTTTAACTTTTTATATATATTTTTGCTTTTTAA
*
81537407 ATTTGATATATT
1 ATAT-ATATATT
81537419 TTTATGAAAT
Statistics
Matches: 301, Mismatches: 2, Indels: 5
0.98 0.01 0.02
Matches are distributed among these distances:
97 3 0.01
98 291 0.97
99 7 0.02
ACGTcount: A:0.32, C:0.10, G:0.06, T:0.52
Consensus pattern (98 bp):
ATATATATATTATAAATCCTATCATTCTCTTTAATTATATTTAAGGGTATACGTGAATTTCACAA
TTTTAACTTTTTATATATATTTTTGCTTTTTAA
Found at i:81537438 original size:21 final size:23
Alignment explanation
Indices: 81537407--81537454 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 23
81537397 TGCTTTTTAA
*
81537407 ATTTGATATATTTTTAT-GAAAT
1 ATTTGATATATTTTTATAAAAAT
81537429 ATTT-ATATATTTTTATAAAAAT
1 ATTTGATATATTTTTATAAAAAT
81537451 ATTT
1 ATTT
81537455 TTGAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
ATTTGATATATTTTTATAAAAAT
Found at i:81543174 original size:26 final size:26
Alignment explanation
Indices: 81543138--81543193 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
81543128 ATACAAATTA
*
81543138 ATAATAGGTTAGGTAAATGTTCCATG
1 ATAATAGGTTAGGTAAATATTCCATG
* *
81543164 ATAATGGGTTAGGTAAATATTTCATG
1 ATAATAGGTTAGGTAAATATTCCATG
81543190 ATAA
1 ATAA
81543194 GAATTTCATG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.38, C:0.05, G:0.21, T:0.36
Consensus pattern (26 bp):
ATAATAGGTTAGGTAAATATTCCATG
Found at i:81544570 original size:236 final size:236
Alignment explanation
Indices: 81544157--81544627 Score: 933
Period size: 236 Copynumber: 2.0 Consensus size: 236
81544147 TGACAAAAAT
81544157 TTGTTAATGAGTTACTTATTGTTTTCTTATAAGCTTACTATGATCTGTAGGTGTGGTTGGTTGAA
1 TTGTTAATGAGTTACTTATTGTTTTCTTATAAGCTTACTATGATCTGTAGGTGTGGTTGGTTGAA
81544222 TATTATAAGGGGTTAATACGTAGTTCGTATTTGAATAGTTAGAATAATGTGTTAGTAATCCAATT
66 TATTATAAGGGGTTAATACGTAGTTCGTATTTGAATAGTTAGAATAATGTGTTAGTAATCCAATT
81544287 GTAGGCAGTTCGTGTGTGGATCTCGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACCCTC
131 GTAGGCAGTTCGTGTGTGGATCTCGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACCCTC
81544352 TTTCTTAGTCTGGACCGGCAAAAGTCGAAAAGCCAAAATGA
196 TTTCTTAGTCTGGACCGGCAAAAGTCGAAAAGCCAAAATGA
*
81544393 TTGTTAATGAGTTGCTTATTGTTTTCTTATAAGCTTACTATGATCTGTAGGTGTGGTTGGTTGAA
1 TTGTTAATGAGTTACTTATTGTTTTCTTATAAGCTTACTATGATCTGTAGGTGTGGTTGGTTGAA
81544458 TATTATAAGGGGTTAATACGTAGTTCGTATTTGAATAGTTAGAATAATGTGTTAGTAATCCAATT
66 TATTATAAGGGGTTAATACGTAGTTCGTATTTGAATAGTTAGAATAATGTGTTAGTAATCCAATT
81544523 GTAGGCAGTTCGTGTGTGGATCTCGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACCCTC
131 GTAGGCAGTTCGTGTGTGGATCTCGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACCCTC
81544588 TTTCTTAGTCTGGACCGGCAAAAGTCGAAAAGCCAAAATG
196 TTTCTTAGTCTGGACCGGCAAAAGTCGAAAAGCCAAAATG
81544628 CCGAAAATCG
Statistics
Matches: 234, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
236 234 1.00
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (236 bp):
TTGTTAATGAGTTACTTATTGTTTTCTTATAAGCTTACTATGATCTGTAGGTGTGGTTGGTTGAA
TATTATAAGGGGTTAATACGTAGTTCGTATTTGAATAGTTAGAATAATGTGTTAGTAATCCAATT
GTAGGCAGTTCGTGTGTGGATCTCGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACCCTC
TTTCTTAGTCTGGACCGGCAAAAGTCGAAAAGCCAAAATGA
Found at i:81544943 original size:26 final size:26
Alignment explanation
Indices: 81544914--81544966 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
81544904 TTTACAGTTT
*
81544914 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCATAGG-GATAAATTGACCGAAA
* *
81544940 TACCCATAGGGTTAAATTGACCTAAA
1 TACCCATAGGGATAAATTGACCGAAA
81544966 T
1 T
81544967 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCATAGGGATAAATTGACCGAAA
Found at i:81549171 original size:26 final size:26
Alignment explanation
Indices: 81549135--81549190 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
81549125 ATACAAATTA
81549135 ATAATAGGTTAGGTAAATGTTCCATG
1 ATAATAGGTTAGGTAAATGTTCCATG
*
81549161 ATAATAGGTTAGGTAAATGTTTCATG
1 ATAATAGGTTAGGTAAATGTTCCATG
81549187 ATAA
1 ATAA
81549191 GAATTTCATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.05, G:0.21, T:0.36
Consensus pattern (26 bp):
ATAATAGGTTAGGTAAATGTTCCATG
Found at i:81555350 original size:17 final size:17
Alignment explanation
Indices: 81555330--81555374 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
81555320 TTGAATTTAA
*
81555330 GTCAATTTCGAGTTCGT
1 GTCAATTTCGAGTTCAT
*
81555347 GTCAATTTAGAGTTCAT
1 GTCAATTTCGAGTTCAT
81555364 GTCAATTTCGA
1 GTCAATTTCGA
81555375 TCTGGGTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (17 bp):
GTCAATTTCGAGTTCAT
Found at i:81558448 original size:16 final size:16
Alignment explanation
Indices: 81558427--81558458 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
81558417 GCTACTGACT
81558427 TGGTTTCAAAAGAAGC
1 TGGTTTCAAAAGAAGC
81558443 TGGTTTCAAAAGAAGC
1 TGGTTTCAAAAGAAGC
81558459 ATCAGGGGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (16 bp):
TGGTTTCAAAAGAAGC
Found at i:81562190 original size:31 final size:31
Alignment explanation
Indices: 81562121--81562190 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 31
81562111 CAAATTAGGT
* **
81562121 GTGTGGGCTCACACGGGTACGCCACACTGGT
1 GTGTGGGCCCACACGGGTACGCCACACTGAC
*
81562152 GTATGGGCCCACACGGGTA-GCC-CACATGAAC
1 GTGTGGGCCCACACGGGTACGCCACAC-TG-AC
81562183 GTGTGGGC
1 GTGTGGGC
81562191 TCATTTAACT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
29 3 0.09
30 5 0.16
31 24 0.75
ACGTcount: A:0.19, C:0.29, G:0.36, T:0.17
Consensus pattern (31 bp):
GTGTGGGCCCACACGGGTACGCCACACTGAC
Found at i:81573559 original size:3 final size:3
Alignment explanation
Indices: 81573551--81573580 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
81573541 ATATGACAAC
81573551 ATA ATA ATA ATA ATA ATA ATA ATA AGTA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA AT
81573581 TATATTTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:81578589 original size:17 final size:17
Alignment explanation
Indices: 81578567--81578600 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81578557 TCAATTTTCC
81578567 CTTTTCTCCCTTTCTTT
1 CTTTTCTCCCTTTCTTT
**
81578584 CTTTTCTTTCTTTCTTT
1 CTTTTCTCCCTTTCTTT
81578601 TCCTCCCCTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (17 bp):
CTTTTCTCCCTTTCTTT
Found at i:81578592 original size:13 final size:13
Alignment explanation
Indices: 81578576--81578602 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81578566 CCTTTTCTCC
81578576 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
81578589 CTTTCTTTCTTTT
1 CTTTCTTTCTTTT
81578602 C
1 C
81578603 CTCCCCTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (13 bp):
CTTTCTTTCTTTT
Found at i:81578958 original size:62 final size:62
Alignment explanation
Indices: 81578886--81579009 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
81578876 TAATATTACA
81578886 CATGTCACCATATCCATATGCACCATACATTTTTCTTTTCTTAATTTATTTCAAAATATAAT
1 CATGTCACCATATCCATATGCACCATACATTTTTCTTTTCTTAATTTATTTCAAAATATAAT
*
81578948 CATGTCACCATGTCCATATGCACCATACATTTTTCTTTTCTTAATTTATTTCAAAATATAAT
1 CATGTCACCATATCCATATGCACCATACATTTTTCTTTTCTTAATTTATTTCAAAATATAAT
81579010 AATATAATTA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.31, C:0.21, G:0.04, T:0.44
Consensus pattern (62 bp):
CATGTCACCATATCCATATGCACCATACATTTTTCTTTTCTTAATTTATTTCAAAATATAAT
Found at i:81581224 original size:22 final size:21
Alignment explanation
Indices: 81581195--81581261 Score: 82
Period size: 22 Copynumber: 3.1 Consensus size: 21
81581185 TGCACTAATG
81581195 AACAGAGAGCACTGAAGTGCT
1 AACAGAGAGCACTGAAGTGCT
*
81581216 ATACAGAGAGCAC-AAATGTGCT
1 A-ACAGAGAGCACTGAA-GTGCT
*
81581238 AATCAGAGAGCACTGACGTGCT
1 AA-CAGAGAGCACTGAAGTGCT
81581260 AA
1 AA
81581262 ATATTAGAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
21 4 0.10
22 34 0.87
23 1 0.03
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.16
Consensus pattern (21 bp):
AACAGAGAGCACTGAAGTGCT
Found at i:81581277 original size:47 final size:47
Alignment explanation
Indices: 81581197--81581556 Score: 573
Period size: 47 Copynumber: 7.7 Consensus size: 47
81581187 CACTAATGAA
*
81581197 CAGAGAGCACTGAAGTGCT--ATA-CAGAGAGCACAAATGTGCTAAT
1 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
* *
81581241 CAGAGAGCACTGACGTGCTAAATATTAGAGATCACAAATGTGCTAAT
1 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
* *
81581288 CATAGAGCTCTGACGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
1 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
* *
81581335 CAGAGAGCACTGACGTGCTAAATATTAGAGATCACAAATGTGCTAAT
1 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
* *
81581382 CATAGAGCTCTGACGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
1 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
* *
81581429 CAGAGAGCACTGACGTGCTAAATATTAGAGATCACAAATGTGCTAAT
1 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
* *
81581476 CATAGAGCTCTGACGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
1 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
*
81581523 CAGAGAGCACTGACGTGCTAAATATTAGAGAGCA
1 CAGAGAGCACTGACGTGCTAAATATCAGAGAGCA
81581557 TGCTGAAGTC
Statistics
Matches: 287, Mismatches: 26, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
44 18 0.06
46 3 0.01
47 266 0.93
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (47 bp):
CAGAGAGCACTGACGTGCTAAATATCAGAGAGCACAAATGTGCTAAT
Found at i:81581350 original size:94 final size:94
Alignment explanation
Indices: 81581219--81581553 Score: 670
Period size: 94 Copynumber: 3.6 Consensus size: 94
81581209 AAGTGCTATA
81581219 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGACGTGCTAAATATTAGAGATCACAAATGTGC
1 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGACGTGCTAAATATTAGAGATCACAAATGTGC
81581284 TAATCATAGAGCTCTGACGTGCTAAATAT
66 TAATCATAGAGCTCTGACGTGCTAAATAT
81581313 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGACGTGCTAAATATTAGAGATCACAAATGTGC
1 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGACGTGCTAAATATTAGAGATCACAAATGTGC
81581378 TAATCATAGAGCTCTGACGTGCTAAATAT
66 TAATCATAGAGCTCTGACGTGCTAAATAT
81581407 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGACGTGCTAAATATTAGAGATCACAAATGTGC
1 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGACGTGCTAAATATTAGAGATCACAAATGTGC
81581472 TAATCATAGAGCTCTGACGTGCTAAATAT
66 TAATCATAGAGCTCTGACGTGCTAAATAT
81581501 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGACGTGCTAAATATTAGAGA
1 CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGACGTGCTAAATATTAGAGA
81581554 GCATGCTGAA
Statistics
Matches: 241, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 241 1.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.23
Consensus pattern (94 bp):
CAGAGAGCACAAATGTGCTAATCAGAGAGCACTGACGTGCTAAATATTAGAGATCACAAATGTGC
TAATCATAGAGCTCTGACGTGCTAAATAT
Found at i:81588956 original size:16 final size:17
Alignment explanation
Indices: 81588928--81588962 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
81588918 ATGACACACT
*
81588928 ATGAATGTCATAAGTGA
1 ATGAATGTCATAAATGA
81588945 ATGAAT-TCATAAATGA
1 ATGAATGTCATAAATGA
81588961 AT
1 AT
81588963 CTAAGATCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.31
Consensus pattern (17 bp):
ATGAATGTCATAAATGA
Found at i:81590664 original size:47 final size:46
Alignment explanation
Indices: 81590590--81590717 Score: 152
Period size: 48 Copynumber: 2.7 Consensus size: 46
81590580 TGATATCTGT
* * *
81590590 GCTAGTGTAAGACCATGTTTGGGACAT-GCATCCGCCACATT-ATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAG---CATTGACGAGA
*
81590637 GCTAATGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATT--GACGAGA
*
81590685 GCTGGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
81590718 GGCAATTTAC
Statistics
Matches: 71, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
45 4 0.06
47 25 0.35
48 42 0.59
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGACGAGA
Found at i:81595613 original size:28 final size:28
Alignment explanation
Indices: 81595558--81595614 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
81595548 TGTTTTATAT
* *
81595558 TTTTAAATATTATTTATTTTAAATTTTC
1 TTTTAAATATTATTTATGTTAAACTTTC
* *
81595586 TTTTACATATTATTTATGTTAGACTTTC
1 TTTTAAATATTATTTATGTTAAACTTTC
81595614 T
1 T
81595615 ATATGTTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.61
Consensus pattern (28 bp):
TTTTAAATATTATTTATGTTAAACTTTC
Found at i:81595697 original size:46 final size:44
Alignment explanation
Indices: 81595620--81595708 Score: 133
Period size: 46 Copynumber: 2.0 Consensus size: 44
81595610 TTTCTATATG
*
81595620 TTATTTTAAATTGTTATATATTATTTATTTTAAGTTGCTTTATT
1 TTATTTTAAATTGTTATATATTAATTATTTTAAGTTGCTTTATT
* *
81595664 TTATTTTAAATTGTTTTGTATATTAATTATTTTAAGTTGTTTTAT
1 TTATTTTAAATTG--TTATATATTAATTATTTTAAGTTGCTTTAT
81595709 ACCATTCACA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 13 0.32
46 27 0.68
ACGTcount: A:0.27, C:0.01, G:0.08, T:0.64
Consensus pattern (44 bp):
TTATTTTAAATTGTTATATATTAATTATTTTAAGTTGCTTTATT
Found at i:81595709 original size:24 final size:23
Alignment explanation
Indices: 81595620--81595709 Score: 87
Period size: 24 Copynumber: 3.9 Consensus size: 23
81595610 TTTCTATATG
*
81595620 TTATTTTAAATTGTTATATATTA
1 TTATTTTAAATTGTTTTATATTA
* *
81595643 TTTATTTTAAGTTG-CTT-TATT-
1 -TTATTTTAAATTGTTTTATATTA
81595664 TTATTTTAAATTGTTTTGTATATTAA
1 TTATTTTAAATTG-TTT-TATATT-A
*
81595690 TTATTTTAAGTTGTTTTATA
1 TTATTTTAAATTGTTTTATA
81595710 CCATTCACAT
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
20 12 0.22
22 5 0.09
23 2 0.04
24 20 0.37
25 3 0.06
26 12 0.22
ACGTcount: A:0.28, C:0.01, G:0.08, T:0.63
Consensus pattern (23 bp):
TTATTTTAAATTGTTTTATATTA
Found at i:81597682 original size:19 final size:19
Alignment explanation
Indices: 81597658--81597702 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
81597648 TGTCTCTTTT
*
81597658 TGCATT-CATTTCATGCATC
1 TGCATTGCATTTCAT-CATA
81597677 TGCATTGCATTTCATCATA
1 TGCATTGCATTTCATCATA
81597696 TGCATTG
1 TGCATTG
81597703 AATGTCACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.42
Consensus pattern (19 bp):
TGCATTGCATTTCATCATA
Found at i:81598315 original size:26 final size:26
Alignment explanation
Indices: 81598286--81598341 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
81598276 TGATACAAAT
81598286 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81598312 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81598338 TGAT
1 TGAT
81598342 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81599880 original size:26 final size:25
Alignment explanation
Indices: 81599828--81599880 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
81599818 TTTACAGTTT
81599828 TACCCCTAGTAGATAAATTACCGAAA
1 TACCCCTAG-AGATAAATTACCGAAA
*
81599854 TACCCCTA-AGATTAAATTGACCTAAA
1 TACCCCTAGAGA-TAAATT-ACCGAAA
81599880 T
1 T
81599881 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 6 0.25
26 15 0.62
ACGTcount: A:0.42, C:0.23, G:0.09, T:0.26
Consensus pattern (25 bp):
TACCCCTAGAGATAAATTACCGAAA
Found at i:81600113 original size:26 final size:25
Alignment explanation
Indices: 81600061--81600113 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
81600051 TTTACAGTTT
81600061 TACCCCTAGTAGATAAATTACCGAAA
1 TACCCCTAG-AGATAAATTACCGAAA
*
81600087 TACCCCTA-AGATTAAATTGACCTAAA
1 TACCCCTAGAGA-TAAATT-ACCGAAA
81600113 T
1 T
81600114 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 6 0.25
26 15 0.62
ACGTcount: A:0.42, C:0.23, G:0.09, T:0.26
Consensus pattern (25 bp):
TACCCCTAGAGATAAATTACCGAAA
Found at i:81600114 original size:233 final size:233
Alignment explanation
Indices: 81599707--81600171 Score: 921
Period size: 233 Copynumber: 2.0 Consensus size: 233
81599697 CCAACGGGCC
81599707 CAATTCGGTAAGAACCCTCGGTACGTTATTCTGTTAGTACGTGAAAAGTAGGAATATCCATGAAA
1 CAATTCGGTAAGAACCCTCGGTACGTTATTCTGTTAGTACGTGAAAAGTAGGAATATCCATGAAA
81599772 AACCCAAAAATAGATAAATTACTGAAATACCTTTAAAAATGGAAAATTTACAGTTTTACCCCTAG
66 AACCCAAAAATAGATAAATTACTGAAATACCTTTAAAAATGGAAAATTTACAGTTTTACCCCTAG
81599837 TAGATAAATTACCGAAATACCCCTAAGATTAAATTGACCTAAATGCATGTTTGACTGTTGTTATT
131 TAGATAAATTACCGAAATACCCCTAAGATTAAATTGACCTAAATGCATGTTTGACTGTTGTTATT
*
81599902 TACTGCATGCCATGTTGTTATTATTTGATGCATGGGAT
196 TACTGCATGCCATGTTGTTATTATCTGATGCATGGGAT
81599940 CAATTCGGTAAGAACCCTCGGTACGTTATTCTGTTAGTACGTGAAAAGTAGGAATATCCATGAAA
1 CAATTCGGTAAGAACCCTCGGTACGTTATTCTGTTAGTACGTGAAAAGTAGGAATATCCATGAAA
81600005 AACCCAAAAATAGATAAATTACTGAAATACCTTTAAAAATGGAAAATTTACAGTTTTACCCCTAG
66 AACCCAAAAATAGATAAATTACTGAAATACCTTTAAAAATGGAAAATTTACAGTTTTACCCCTAG
81600070 TAGATAAATTACCGAAATACCCCTAAGATTAAATTGACCTAAATGCATGTTTGACTGTTGTTATT
131 TAGATAAATTACCGAAATACCCCTAAGATTAAATTGACCTAAATGCATGTTTGACTGTTGTTATT
81600135 TACTGCATGCCATGTTGTTATTATCTGATGCATGGGA
196 TACTGCATGCCATGTTGTTATTATCTGATGCATGGGA
81600172 CTGGGATATT
Statistics
Matches: 231, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
233 231 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (233 bp):
CAATTCGGTAAGAACCCTCGGTACGTTATTCTGTTAGTACGTGAAAAGTAGGAATATCCATGAAA
AACCCAAAAATAGATAAATTACTGAAATACCTTTAAAAATGGAAAATTTACAGTTTTACCCCTAG
TAGATAAATTACCGAAATACCCCTAAGATTAAATTGACCTAAATGCATGTTTGACTGTTGTTATT
TACTGCATGCCATGTTGTTATTATCTGATGCATGGGAT
Found at i:81600492 original size:56 final size:56
Alignment explanation
Indices: 81600406--81600518 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
81600396 GTATTTTGAA
81600406 ATGGGCCTATGGGCCATACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGT
1 ATGGGCCTATGGGCCATACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGT
81600462 ATGGGCCTATGGGCCATACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGT
1 ATGGGCCTATGGGCCATACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGT
81600518 A
1 A
81600519 ATCTGAAAAG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (56 bp):
ATGGGCCTATGGGCCATACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGT
Found at i:81604114 original size:21 final size:21
Alignment explanation
Indices: 81604088--81604131 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
81604078 CTTAAACAAG
81604088 AAGTAACGGAGTTTGTAGGGA
1 AAGTAACGGAGTTTGTAGGGA
81604109 AAGTAACGGAGTTTGTAGGGA
1 AAGTAACGGAGTTTGTAGGGA
81604130 AA
1 AA
81604132 TGTCTGACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.05, G:0.36, T:0.23
Consensus pattern (21 bp):
AAGTAACGGAGTTTGTAGGGA
Found at i:81605672 original size:26 final size:26
Alignment explanation
Indices: 81605643--81606426 Score: 1568
Period size: 26 Copynumber: 30.2 Consensus size: 26
81605633 TGATACAAAT
81605643 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81605669 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81605695 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81605721 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81605747 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81605773 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81605799 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81605825 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81605851 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81605877 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81605903 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81605929 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81605955 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81605981 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606007 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606033 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606059 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606085 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606111 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606137 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606163 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606189 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606215 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606241 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606267 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606293 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606319 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606345 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606371 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606397 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81606423 TGAT
1 TGAT
81606427 TGGAATTTCA
Statistics
Matches: 758, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 758 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81608758 original size:9 final size:9
Alignment explanation
Indices: 81608744--81608794 Score: 75
Period size: 9 Copynumber: 5.7 Consensus size: 9
81608734 TTTGGTTAAA
81608744 AATTAACCG
1 AATTAACCG
81608753 AATTAACCG
1 AATTAACCG
**
81608762 AATTAATTG
1 AATTAACCG
81608771 AATTAACCG
1 AATTAACCG
*
81608780 AATTAACTG
1 AATTAACCG
81608789 AATTAA
1 AATTAA
81608795 ATCACTACAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:81608767 original size:18 final size:18
Alignment explanation
Indices: 81608744--81608794 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
81608734 TTTGGTTAAA
*
81608744 AATTAACCGAATTAACCG
1 AATTAACTGAATTAACCG
*
81608762 AATTAATTGAATTAACCG
1 AATTAACTGAATTAACCG
81608780 AATTAACTGAATTAA
1 AATTAACTGAATTAA
81608795 ATCACTACAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.47, C:0.14, G:0.10, T:0.29
Consensus pattern (18 bp):
AATTAACTGAATTAACCG
Found at i:81608822 original size:17 final size:17
Alignment explanation
Indices: 81608800--81608897 Score: 52
Period size: 17 Copynumber: 5.4 Consensus size: 17
81608790 ATTAAATCAC
81608800 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
81608817 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
*
81608837 TACATAATAAAAAACAT
1 TACATAATTAAAAACAT
** * *
81608854 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
*
81608874 TACTTAATTAAAAACAT
1 TACATAATTAAAAACAT
81608891 TACATAA
1 TACATAA
81608898 GTCTTGAAAT
Statistics
Matches: 55, Mismatches: 20, Indels: 12
0.63 0.23 0.14
Matches are distributed among these distances:
17 31 0.56
20 24 0.44
ACGTcount: A:0.49, C:0.15, G:0.04, T:0.32
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:81608919 original size:37 final size:37
Alignment explanation
Indices: 81608794--81608902 Score: 200
Period size: 37 Copynumber: 2.9 Consensus size: 37
81608784 AACTGAATTA
81608794 AATCACTACATAATTAAAAACATTACATAAGTCTTTG
1 AATCACTACATAATTAAAAACATTACATAAGTCTTTG
*
81608831 AATCACTACATAATAAAAAACATTACATAAGTCTTTG
1 AATCACTACATAATTAAAAACATTACATAAGTCTTTG
*
81608868 AATCACTACTTAATTAAAAACATTACATAAGTCTT
1 AATCACTACATAATTAAAAACATTACATAAGTCTT
81608903 GAAATTAACA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.47, C:0.17, G:0.05, T:0.32
Consensus pattern (37 bp):
AATCACTACATAATTAAAAACATTACATAAGTCTTTG
Found at i:81615313 original size:8 final size:8
Alignment explanation
Indices: 81615312--81615342 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
81615302 GGGTAATTGG
81615312 GTTGGGTA
1 GTTGGGTA
81615320 GTTGGGTA
1 GTTGGGTA
81615328 GTTGGGTA
1 GTTGGGTA
81615336 GTTGGGT
1 GTTGGGT
81615343 TTTAATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.10, C:0.00, G:0.52, T:0.39
Consensus pattern (8 bp):
GTTGGGTA
Found at i:81615318 original size:13 final size:13
Alignment explanation
Indices: 81615281--81615326 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
81615271 AATAAAAATT
*
81615281 ATTGGGTTGGGAA
1 ATTGGGTTGGGTA
*
81615294 ATTAGGTTGGGTA
1 ATTGGGTTGGGTA
81615307 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
*
81615320 GTTGGGT
1 ATTGGGT
81615327 AGTTGGGTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.17, C:0.00, G:0.46, T:0.37
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:81618894 original size:53 final size:53
Alignment explanation
Indices: 81618814--81618970 Score: 269
Period size: 53 Copynumber: 3.0 Consensus size: 53
81618804 GCTCCCAACC
* * *
81618814 AATTTCCTTTTTATTACATTTGCTATCTTTGATTAACTTACTCATTTCGAGTT
1 AATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCAAGTT
81618867 AATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCAAGTT
1 AATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCAAGTT
* *
81618920 AATTTCCTTCTTATTGCATTTGCTATCTTTGATTAATTTATTCATTTCAAG
1 AATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCAAG
81618971 CTATGCTCTT
Statistics
Matches: 99, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 99 1.00
ACGTcount: A:0.24, C:0.17, G:0.07, T:0.53
Consensus pattern (53 bp):
AATTTCCTTCTTATTACATTTGCTATCTTTGATTAACTTATTCATTTCAAGTT
Found at i:81618906 original size:27 final size:26
Alignment explanation
Indices: 81618876--81618966 Score: 71
Period size: 26 Copynumber: 3.4 Consensus size: 26
81618866 TAATTTCCTT
81618876 CTTATTACATTTGCTATCTTTGATTAA
1 CTTATT-CATTTGCTATCTTTGATTAA
* * **
81618903 CTTATTCATTT-CAAGTTAATTTCCTT--
1 CTTATTCATTTGCTA--T-CTTTGATTAA
81618929 CTTATTGCATTTGCTATCTTTGATTAA
1 CTTATT-CATTTGCTATCTTTGATTAA
*
81618956 TTTATTCATTT
1 CTTATTCATTT
81618967 CAAGCTATGC
Statistics
Matches: 48, Mismatches: 9, Indels: 15
0.67 0.12 0.21
Matches are distributed among these distances:
25 7 0.15
26 17 0.35
27 17 0.35
28 7 0.15
ACGTcount: A:0.23, C:0.15, G:0.07, T:0.55
Consensus pattern (26 bp):
CTTATTCATTTGCTATCTTTGATTAA
Found at i:81619069 original size:39 final size:39
Alignment explanation
Indices: 81619015--81619093 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
81619005 TTATGATCTT
81619015 TTTCAAGATTTTGCATTGAAATAATGATTAATGGACTAA
1 TTTCAAGATTTTGCATTGAAATAATGATTAATGGACTAA
81619054 TTTCAAGATTTTGCATTGAAATAATGATTAATGGACTAA
1 TTTCAAGATTTTGCATTGAAATAATGATTAATGGACTAA
81619093 T
1 T
81619094 AAAACTTTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.39
Consensus pattern (39 bp):
TTTCAAGATTTTGCATTGAAATAATGATTAATGGACTAA
Found at i:81619533 original size:46 final size:46
Alignment explanation
Indices: 81619442--81619553 Score: 136
Period size: 46 Copynumber: 2.4 Consensus size: 46
81619432 CCCTGAGCTA
* *
81619442 CAGTGGTATGAATTGAAGAAGATACAAATCCTATACCCATAAGTTG
1 CAGTGGGATGGATTGAAGAAGATACAAATCCTATACCCATAAGTTG
* * *
81619488 CAGTGGGATGGATTGAAGATGATACACATCCTATA-CCATTGAGTTG
1 CAGTGGGATGGATTGAAGAAGATACAAATCCTATACCCA-TAAGTTG
* * *
81619534 CAATGGGGTGGATAGAAGAA
1 CAGTGGGATGGATTGAAGAA
81619554 ACCACAAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 3 0.05
46 53 0.95
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.25
Consensus pattern (46 bp):
CAGTGGGATGGATTGAAGAAGATACAAATCCTATACCCATAAGTTG
Found at i:81620236 original size:44 final size:43
Alignment explanation
Indices: 81620166--81620498 Score: 150
Period size: 44 Copynumber: 7.7 Consensus size: 43
81620156 AATCATGGTG
* * * ** *
81620166 AATCTTATCTTCCTGAAGTTGTAGTGGAGTAGATTGAAGCCAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACCAC
* *
81620209 AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGATCAAAACCAT
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACCAC
* ** * *
81620253 AATCCTTATCTCTCTGAAGTTGCAGTAAAGCAGGATAAAAAAACAC
1 AAT-CTTATCTCCCTGAAGTTGCAGTGGAGCA-GAT-CAAAACCAC
* ** * * * *
81620299 AAACCTTATCTCCCTGAAGTTATAGTGGAGCAGGTTGAAGTAGCA-
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATCAA-AACCAC
* * *
81620344 AGTCTTATCTCCTTGAAGTTGTAGTGGAGCAG---------A-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACCAC
* * ** *
81620377 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACCAC
** * * *
81620420 AATACTTATCTCTTTGAAGTTGCGGTAGAGCAGGAT-AAAGATACAC
1 AAT-CTTATCTCCCTGAAGTTGCAGTGGAGCA-GATCAAA-A-CCAC
* * *
81620466 AAACCTTATCTCTCTGAAGTTGTAGTGGAGCAG
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAG
81620499 GTTGAAATTA
Statistics
Matches: 224, Mismatches: 45, Indels: 40
0.72 0.15 0.13
Matches are distributed among these distances:
33 31 0.14
42 1 0.00
43 6 0.03
44 112 0.50
45 9 0.04
46 61 0.27
47 4 0.02
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACCAC
Found at i:81620317 original size:46 final size:44
Alignment explanation
Indices: 81620213--81620319 Score: 124
Period size: 46 Copynumber: 2.4 Consensus size: 44
81620203 AGCCACAAGT
* ** * * * *
81620213 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATCAAAACCATAATC
1 CTTATCTCCCTGAAGTTGCAGTAAAGCAGATAAAAAACACAAAC
*
81620257 CTTATCTCTCTGAAGTTGCAGTAAAGCAGGATAAAAAAACACAAAC
1 CTTATCTCCCTGAAGTTGCAGTAAAGCA-GAT-AAAAAACACAAAC
81620303 CTTATCTCCCTGAAGTT
1 CTTATCTCCCTGAAGTT
81620320 ATAGTGGAGC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 24 0.46
45 3 0.06
46 25 0.48
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTAAAGCAGATAAAAAACACAAAC
Found at i:81620380 original size:33 final size:33
Alignment explanation
Indices: 81620343--81620409 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
81620333 TTGAAGTAGC
* *
81620343 AAGTCTTATCTCCTTGAAGTTGTAGTGGAGCAG
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
81620376 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
81620409 A
1 A
81620410 TCGAAGTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (33 bp):
AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
Found at i:81620451 original size:77 final size:76
Alignment explanation
Indices: 81620303--81620452 Score: 185
Period size: 77 Copynumber: 1.9 Consensus size: 76
81620293 AAACACAAAC
* * * * *
81620303 CTTATCTCCCTGAAGTTATAGTGGAGCAGGTTGAAGTAGCAAGTCTTATCTCCTTGAAGTTGTAG
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGTA-CAAATCTTATCTCCTTGAAGTTGCAG
*
81620368 TGGAGCAGAAGT
65 TAGAGCAGAAGT
* * *
81620380 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGT-CATAATACTTATCTCTTTGAAGTTGCG
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGTACA-AAT-CTTATCTCCTTGAAGTTGCA
81620444 GTAGAGCAG
64 GTAGAGCAG
81620453 GATAAAGATA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
75 2 0.03
76 2 0.03
77 58 0.94
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (76 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGTACAAATCTTATCTCCTTGAAGTTGCAGT
AGAGCAGAAGT
Found at i:81620485 original size:167 final size:168
Alignment explanation
Indices: 81620209--81620531 Score: 495
Period size: 167 Copynumber: 1.9 Consensus size: 168
81620199 TTGAAGCCAC
*
81620209 AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGATCAAAACCATAATCCTTATCTCTCTGAAGTT
1 AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGATCAAAACCATAATACTTATCTCTCTGAAGTT
81620274 GCAGTAAAGCAGGATAAAAAAACACAAACCTTATCTCCCTGAAGTTATAGTGGAGCAGGTTG-AA
66 GCAGTAAAGCAGGATAAAAAAACACAAACCTTATCTCCCTGAAGTTATAGTGGAGCAGGTTGAAA
* *
81620338 GTAGCAAGTCTTATCTCCTTGAAGTTGTAGTGGAGCAG
131 GTACCAAGTCTTACCTCCTTGAAGTTGTAGTGGAGCAG
* * ** *
81620376 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGTCATAATACTTATCTCTTTGAAGTT
1 AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGATCAAAACCATAATACTTATCTCTCTGAAGTT
* * * * * *
81620441 GCGGTAGAGCAGGATAAAGATACACAAACCTTATCTCTCTGAAGTTGTAGTGGAGCAGGTTGAAA
66 GCAGTAAAGCAGGATAAAAAAACACAAACCTTATCTCCCTGAAGTTATAGTGGAGCAGGTTGAAA
* *
81620506 TTACCAATTCTTACCTCCTTGAAGTT
131 GTACCAAGTCTTACCTCCTTGAAGTT
81620532 CCAGCGGAGT
Statistics
Matches: 139, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
167 115 0.83
168 24 0.17
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (168 bp):
AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGATCAAAACCATAATACTTATCTCTCTGAAGTT
GCAGTAAAGCAGGATAAAAAAACACAAACCTTATCTCCCTGAAGTTATAGTGGAGCAGGTTGAAA
GTACCAAGTCTTACCTCCTTGAAGTTGTAGTGGAGCAG
Found at i:81622122 original size:28 final size:30
Alignment explanation
Indices: 81622056--81622124 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 30
81622046 GACCCTATAC
*
81622056 TTTAAACT-TTTTTATTATATATTATTTAT
1 TTTAAACTATTTTTATCATATATTATTTAT
81622085 TTTAAA-TATTTTTA-CATAT-TTATTTAT
1 TTTAAACTATTTTTATCATATATTATTTAT
81622112 TTTAAACTATTTT
1 TTTAAACTATTTT
81622125 ATCTATTTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
27 14 0.38
28 11 0.30
29 12 0.32
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (30 bp):
TTTAAACTATTTTTATCATATATTATTTAT
Found at i:81622125 original size:27 final size:29
Alignment explanation
Indices: 81622056--81622127 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 29
81622046 GACCCTATAC
* *
81622056 TTTAAACTTTTTTATTATATATTATTTAT
1 TTTAAACTATTTTATCATATATTATTTAT
81622085 TTTAAA-TATTTT-TACATAT-TTATTTAT
1 TTTAAACTATTTTAT-CATATATTATTTAT
81622112 TTTAAACTATTTTATC
1 TTTAAACTATTTTATC
81622128 TATTTTAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
27 15 0.39
28 16 0.42
29 7 0.18
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (29 bp):
TTTAAACTATTTTATCATATATTATTTAT
Found at i:81622131 original size:27 final size:27
Alignment explanation
Indices: 81622056--81622132 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 27
81622046 GACCCTATAC
* *
81622056 TTTAAACTTTTTTATTATATATTATTTAT
1 TTTAAACTATTTTA-TCTAT-TTATTTAT
81622085 TTTAAA-TATTTT-TACATATTTATTTAT
1 TTTAAACTATTTTAT-C-TATTTATTTAT
81622112 TTTAAACTATTTTATCTATTT
1 TTTAAACTATTTTATCTATTT
81622133 TAAATTTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
26 1 0.02
27 19 0.45
28 15 0.36
29 7 0.17
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (27 bp):
TTTAAACTATTTTATCTATTTATTTAT
Found at i:81622182 original size:26 final size:24
Alignment explanation
Indices: 81622137--81622190 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
81622127 CTATTTTAAA
* *
81622137 TTTTTATGTTATTTAGTTTATATT
1 TTTTTATGTTAATTAGTTTAAATT
81622161 GTTTTATATGTTAATT-GTTTTAAATT
1 -TTTT-TATGTTAATTAG-TTTAAATT
81622187 TTTT
1 TTTT
81622191 GTTTATTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (24 bp):
TTTTTATGTTAATTAGTTTAAATT
Found at i:81622233 original size:25 final size:25
Alignment explanation
Indices: 81622205--81622261 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
81622195 ATTATTAAAC
81622205 TATTTTATATATTTTTA-ATAATATT
1 TATTTTA-ATATTTTTACATAATATT
* *
81622230 TATTTTAATTTTTTTACATATTATT
1 TATTTTAATATTTTTACATAATATT
81622255 TATTTTA
1 TATTTTA
81622262 GACTTTCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 8 0.28
25 21 0.72
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (25 bp):
TATTTTAATATTTTTACATAATATT
Found at i:81627346 original size:26 final size:26
Alignment explanation
Indices: 81627316--81627368 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
81627306 CTTAAAAAGC
81627316 TCGCTTTATTTAAAACGTGTTTGTCA
1 TCGCTTTATTTAAAACGTGTTTGTCA
81627342 TCGCTTTATTTAAAACGTGTTTGTCA
1 TCGCTTTATTTAAAACGTGTTTGTCA
81627368 T
1 T
81627369 ACTTATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.47
Consensus pattern (26 bp):
TCGCTTTATTTAAAACGTGTTTGTCA
Found at i:81627539 original size:13 final size:13
Alignment explanation
Indices: 81627521--81627563 Score: 70
Period size: 12 Copynumber: 3.3 Consensus size: 13
81627511 GTATCATGTC
81627521 AAAAATCCAAAAA
1 AAAAATCCAAAAA
81627534 AAAAATCC-AAAA
1 AAAAATCCAAAAA
81627546 AAAAATCCAAAACA
1 AAAAATCCAAAA-A
81627560 AAAA
1 AAAA
81627564 CAATCACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.43
13 11 0.39
14 5 0.18
ACGTcount: A:0.77, C:0.16, G:0.00, T:0.07
Consensus pattern (13 bp):
AAAAATCCAAAAA
Found at i:81637528 original size:8 final size:8
Alignment explanation
Indices: 81637515--81637545 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
81637505 AAAATAATTC
81637515 GAAAAAAA
1 GAAAAAAA
81637523 GAAAAAAA
1 GAAAAAAA
81637531 GAAAAGAAA
1 GAAAA-AAA
81637540 GAAAAA
1 GAAAAA
81637546 TAGTTTGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (8 bp):
GAAAAAAA
Found at i:81637661 original size:37 final size:37
Alignment explanation
Indices: 81637611--81637684 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
81637601 GCCTATGTTT
81637611 TCTAAGGTTGTGGACATGATATAGTTACTTGTAGGGA
1 TCTAAGGTTGTGGACATGATATAGTTACTTGTAGGGA
*
81637648 TCTAAGGTTGTGGACATGATATAGTTACTTGTTGGGA
1 TCTAAGGTTGTGGACATGATATAGTTACTTGTAGGGA
81637685 AACTCTTGTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.08, G:0.30, T:0.36
Consensus pattern (37 bp):
TCTAAGGTTGTGGACATGATATAGTTACTTGTAGGGA
Found at i:81640127 original size:22 final size:21
Alignment explanation
Indices: 81640097--81640143 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
81640087 TACAAATTAA
81640097 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
81640119 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
81640140 ATCT
1 ATCT
81640144 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:81640149 original size:19 final size:19
Alignment explanation
Indices: 81640114--81640173 Score: 88
Period size: 17 Copynumber: 3.2 Consensus size: 19
81640104 AGATTACAAG
81640114 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
81640135 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
81640152 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
81640171 ATC
1 ATC
81640174 CTTAATGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
17 17 0.46
19 11 0.30
20 1 0.03
21 8 0.22
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:81640649 original size:44 final size:45
Alignment explanation
Indices: 81640536--81640803 Score: 238
Period size: 45 Copynumber: 5.9 Consensus size: 45
81640526 CGATATCTAC
* * *
81640536 TATCTTTGATCTGTTCCCCGTCTAATACAGAGACGTCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* *
81640581 TATCTTCGATCTGCTCCCCATCTAATACAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* *
81640626 T-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * * * * *
81640670 TATCTCCGATTTGCTCCCCGTCTAACATAAAGATGCCAAATCTAT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * ** * * * * *
81640715 CATCTTGGATCTGCT--TTGATGTAA-ACACATGAAGGTCAAATTTGCT
1 TATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ACGCCAAATCTG-T
* *
81640761 ATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 -TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATC
81640804 ATATTGGATC
Statistics
Matches: 175, Mismatches: 39, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
43 4 0.02
44 45 0.26
45 96 0.55
46 1 0.01
47 19 0.11
48 5 0.03
49 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.31
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
Found at i:81640708 original size:89 final size:89
Alignment explanation
Indices: 81640544--81640712 Score: 248
Period size: 89 Copynumber: 1.9 Consensus size: 89
81640534 ACTATCTTTG
* * * *
81640544 ATCTGTTCCCCGTCTAATACAGAGACGTCAAATCTGTTATCTTCGATCTGCTCCCCATCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCATCTAACAC
*
81640609 AGAGACGCCAAATCTGCTTCTTCA
66 AAAGACGCCAAATCTGCTTCTTCA
* * * *
81640633 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAACAT
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCATCTAACAC
*
81640698 AAAGATGCCAAATCT
66 AAAGACGCCAAATCT
81640713 ATCATCTTGG
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
89 70 1.00
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGCTCCCCATCTAACAC
AAAGACGCCAAATCTGCTTCTTCA
Found at i:81640874 original size:78 final size:78
Alignment explanation
Indices: 81640743--81641817 Score: 1821
Period size: 78 Copynumber: 13.8 Consensus size: 78
81640733 ATGTAAACAC
* * * * ** *
81640743 ATGAAGGTCAAATTTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATAT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
81640808 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * * ***
81640821 ATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTC-CTCGTCTAATACAAAGATGCCAAATCATC
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTC-CGTCGAATATGGAGATGCCAAATCATC
81640885 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * * * * * * * *
81640899 ATGAAGGTTAGATCTACTGTGTCTTTGATCTGCTAC-CCGTCTAATATAGAGATGCCAAATAATC
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACT-CTCCGTCGAATATGGAGATGCCAAATCATC
*
81640963 TTGGATATGCTTCA
65 TTGGATCTGCTTCA
* * * * * *
81640977 ATAAAGGTCAGATCTGCTATGTCTTCAATTTGCTCTCCATCGAATATGGAGATGCCAAATCATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
81641042 TGGATCTGCTTCA
66 TGGATCTGCTTCA
81641055 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
81641120 TGGATCTGCTTCA
66 TGGATCTGCTTCA
81641133 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
81641198 TGGATCTGCTTCA
66 TGGATCTGCTTCA
81641211 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
81641276 TGGATCTGCTTCA
66 TGGATCTGCTTCA
81641289 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
81641354 TGGATCTGCTTCA
66 TGGATCTGCTTCA
81641367 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
81641432 TGGATCTGCTTCA
66 TGGATCTGCTTCA
81641445 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
81641510 TGGATCTGCTTCA
66 TGGATCTGCTTCA
81641523 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
81641588 TGGATCTGCTTCA
66 TGGATCTGCTTCA
81641601 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
81641666 TGGATCTGCTTCA
66 TGGATCTGCTTCA
81641679 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
81641744 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * *
81641757 ATGAAGGTCAATTTTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATC
81641818 TGTTTCTTCG
Statistics
Matches: 957, Mismatches: 37, Indels: 6
0.96 0.04 0.01
Matches are distributed among these distances:
77 2 0.00
78 953 1.00
79 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAAATCTGCTATGTCTTCGATCTACTCTCCGTCGAATATGGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:81649905 original size:22 final size:21
Alignment explanation
Indices: 81649875--81649940 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
81649865 TATAAATTAA
81649875 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
81649897 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
81649918 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
81649937 ATCT
1 ATCT
81649941 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:81649927 original size:19 final size:19
Alignment explanation
Indices: 81649892--81649989 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
81649882 AGATTACAAG
81649892 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
81649913 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
81649932 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
81649949 ATCACATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
* *
81649968 ATCATAACTAAGATTGCGT
1 ATCATATCTAAGATTGCAT
81649987 ATC
1 ATC
81649990 CTTAAAGATT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 16 0.23
19 46 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:81649958 original size:36 final size:37
Alignment explanation
Indices: 81649892--81649983 Score: 132
Period size: 36 Copynumber: 2.4 Consensus size: 37
81649882 AGATTACAAG
*
81649892 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCACATCTAAGATTGCAT
81649932 ATCATATCTAAGATTG-TATCACATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCACATCTAAGATTGCAT
*
81649968 ATCATAACTAAGATTG
1 ATCATATCTAAGATTG
81649984 CGTATCCTTA
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
36 34 0.68
38 7 0.14
39 1 0.02
40 8 0.16
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCACATCTAAGATTGCAT
Found at i:81655684 original size:13 final size:13
Alignment explanation
Indices: 81655665--81655696 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
81655655 AGGGTAATGT
81655665 CAAAAATCCAAAA
1 CAAAAATCCAAAA
*
81655678 TAAAAATCCAAAA
1 CAAAAATCCAAAA
81655691 CAAAAA
1 CAAAAA
81655697 CAATCCCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.72, C:0.19, G:0.00, T:0.09
Consensus pattern (13 bp):
CAAAAATCCAAAA
Found at i:81657286 original size:16 final size:15
Alignment explanation
Indices: 81657258--81657298 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 15
81657248 CTTCTTTTAA
81657258 AAAAATAAAATCAAAT
1 AAAAAT-AAATCAAAT
81657274 AAATAATAAATCAAAT
1 AAA-AATAAATCAAAT
81657290 AAAAATAAA
1 AAAAATAAA
81657299 GTTTTAAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.25
16 15 0.62
17 3 0.12
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.20
Consensus pattern (15 bp):
AAAAATAAATCAAAT
Found at i:81662737 original size:40 final size:40
Alignment explanation
Indices: 81662681--81662884 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
81662671 CGAAATTTAA
** *
81662681 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
81662721 CCGGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81662761 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
81662800 CC-GAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
81662840 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
81662880 CCGGA
1 CCGGA
81662885 CATCATTCGA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 4 0.03
39 30 0.22
40 90 0.65
41 14 0.10
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:81662811 original size:79 final size:80
Alignment explanation
Indices: 81662702--81662882 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
81662692 TACTCGTTCA
* **
81662702 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCAGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGA
* *
81662766 TTTAGTAAC-TCGCACC
65 TATAGTAACTTAGCA-C
**
81662782 AATGCCTTCGGG-CTTAGCCCGAA-ATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
81662845 TATAGTCACTTAGCAC
65 TATAGTAACTTAGCAC
*
81662861 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
81662883 GACATCATTC
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
78 4 0.05
79 59 0.67
80 25 0.28
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:81666225 original size:21 final size:20
Alignment explanation
Indices: 81666176--81666220 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 20
81666166 TTGAAGGCCT
81666176 CAGCTCTCGCCCTTTCCCTA
1 CAGCTCTCGCCCTTTCCCTA
81666196 NCAGCTCTCGCCCTTTCCCTA
1 -CAGCTCTCGCCCTTTCCCTA
81666217 -AGCT
1 CAGCT
81666221 ATCTCCATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 4 0.17
21 20 0.83
ACGTcount: A:0.11, C:0.47, G:0.11, T:0.29
Consensus pattern (20 bp):
CAGCTCTCGCCCTTTCCCTA
Found at i:81666911 original size:15 final size:15
Alignment explanation
Indices: 81666891--81666921 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81666881 TCCTCCTATC
*
81666891 TTTTTTATTTTTATT
1 TTTTTTATTTTCATT
81666906 TTTTTTATTTTCATT
1 TTTTTTATTTTCATT
81666921 T
1 T
81666922 CAATTTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTATTTTCATT
Done.