Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 252 of 279
Found at i:82058858 original size:20 final size:21
Alignment explanation
Indices: 82058819--82058858 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
82058809 AAGAAAATTT
*
82058819 TTGTTTTGTTATATTATTTTC
1 TTGTTTTGTTATACTATTTTC
*
82058840 TTGTTTT-TTTTACTATTTT
1 TTGTTTTGTTATACTATTTT
82058859 TTCGTTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.12, C:0.05, G:0.07, T:0.75
Consensus pattern (21 bp):
TTGTTTTGTTATACTATTTTC
Found at i:82058869 original size:23 final size:22
Alignment explanation
Indices: 82058822--82058869 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
82058812 AAAATTTTTG
*
82058822 TTTTGTTATATTATTTTCTTGT
1 TTTTGTTATATTATTTTCTTAT
*
82058844 TTTTTTTACTATT-TTTTCGTTAT
1 TTTTGTTA-TATTATTTTC-TTAT
82058867 TTT
1 TTT
82058870 CTTCTTGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.12, C:0.06, G:0.06, T:0.75
Consensus pattern (22 bp):
TTTTGTTATATTATTTTCTTAT
Found at i:82060110 original size:9 final size:9
Alignment explanation
Indices: 82060100--82060140 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
82060090 TATAAAAAAA
82060100 TTAACCGAA-
1 TTAACC-AAT
*
82060109 TTAATCAAT
1 TTAACCAAT
82060118 TTAACCAAT
1 TTAACCAAT
82060127 TTAACCAAT
1 TTAACCAAT
82060136 TTAAC
1 TTAAC
82060141 TGAAATTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 2 0.07
9 27 0.93
ACGTcount: A:0.44, C:0.20, G:0.02, T:0.34
Consensus pattern (9 bp):
TTAACCAAT
Found at i:82064200 original size:27 final size:27
Alignment explanation
Indices: 82064165--82064224 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
82064155 AAATTTATTA
* *
82064165 ATAAATTAATTAAAATTTAA-TATGTTT
1 ATAATTTAAGTAAAATTTAATTAT-TTT
*
82064192 ATAATTTAAGTACAATTTAATTATTTT
1 ATAATTTAAGTAAAATTTAATTATTTT
82064219 ATAATT
1 ATAATT
82064225 ATATTATATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 26 0.90
28 3 0.10
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (27 bp):
ATAATTTAAGTAAAATTTAATTATTTT
Found at i:82070168 original size:29 final size:29
Alignment explanation
Indices: 82070136--82070280 Score: 175
Period size: 29 Copynumber: 5.0 Consensus size: 29
82070126 AATGGTTGAA
82070136 ACCATCCCTTTTCATATTTGATGGTCGTC
1 ACCATCCCTTTTCATATTTGATGGTCGTC
* * **
82070165 ACCATCCCTTTTCATATTCGATGGTTGAA
1 ACCATCCCTTTTCATATTTGATGGTCGTC
*
82070194 ACCATCCCTTTTCTTATTTGATGGTCGTC
1 ACCATCCCTTTTCATATTTGATGGTCGTC
* **
82070223 ACCATCCCTTTTCATATTTGATAGAT-GAA
1 ACCATCCCTTTTCATATTTGAT-GGTCGTC
* * *
82070252 ACCAACCCTTTTCATATTCGATGGGCGTC
1 ACCATCCCTTTTCATATTTGATGGTCGTC
82070281 TATACTTCAT
Statistics
Matches: 95, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
28 1 0.01
29 92 0.97
30 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (29 bp):
ACCATCCCTTTTCATATTTGATGGTCGTC
Found at i:82070191 original size:58 final size:58
Alignment explanation
Indices: 82070127--82070280 Score: 245
Period size: 58 Copynumber: 2.7 Consensus size: 58
82070117 TCTTTAATCA
82070127 ATGGTTGAAACCATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATATTCG
1 ATGGTTGAAACCATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATATTCG
* *
82070185 ATGGTTGAAACCATCCCTTTTCTTATTTGATGGTCGTCACCATCCCTTTTCATATTTG
1 ATGGTTGAAACCATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATATTCG
* * * * *
82070243 ATAGATGAAACCAACCCTTTTCATATTCGATGGGCGTC
1 ATGGTTGAAACCATCCCTTTTCATATTTGATGGTCGTC
82070281 TATACTTCAT
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 88 1.00
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (58 bp):
ATGGTTGAAACCATCCCTTTTCATATTTGATGGTCGTCACCATCCCTTTTCATATTCG
Found at i:82075740 original size:18 final size:18
Alignment explanation
Indices: 82075701--82075736 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
82075691 CATGTGGCCT
*
82075701 GCCCGTGCTGGCCTACAC
1 GCCCGTGCTGGCCCACAC
82075719 GCCCGTG-TGGCCCACAC
1 GCCCGTGCTGGCCCACAC
82075736 G
1 G
82075737 GCCCTATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.11, C:0.44, G:0.31, T:0.14
Consensus pattern (18 bp):
GCCCGTGCTGGCCCACAC
Found at i:82075903 original size:33 final size:33
Alignment explanation
Indices: 82075830--82075894 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
82075820 ACTCGTATGA
* * * *
82075830 CCTACACAGCCCAAATCAGTCTAGCCTGTGTGG
1 CCTACACAACCAAAATCAGTCCAGCCTATGTGG
82075863 CCTACACAACCAAAATCAGTCCAGCCTATGTG
1 CCTACACAACCAAAATCAGTCCAGCCTATGTG
82075895 TCACACACAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.29, C:0.34, G:0.17, T:0.20
Consensus pattern (33 bp):
CCTACACAACCAAAATCAGTCCAGCCTATGTGG
Found at i:82086259 original size:55 final size:55
Alignment explanation
Indices: 82086189--82086297 Score: 209
Period size: 55 Copynumber: 2.0 Consensus size: 55
82086179 ACCAAGGCCA
82086189 GAAGCTCATTAATCGACTGAGCGAATAATATTTAAAAGGAATCAACTACTCCAGG
1 GAAGCTCATTAATCGACTGAGCGAATAATATTTAAAAGGAATCAACTACTCCAGG
*
82086244 GAAGCTCATTCATCGACTGAGCGAATAATATTTAAAAGGAATCAACTACTCCAG
1 GAAGCTCATTAATCGACTGAGCGAATAATATTTAAAAGGAATCAACTACTCCAG
82086298 TGCATATACG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.24
Consensus pattern (55 bp):
GAAGCTCATTAATCGACTGAGCGAATAATATTTAAAAGGAATCAACTACTCCAGG
Found at i:82086467 original size:40 final size:40
Alignment explanation
Indices: 82086388--82086565 Score: 243
Period size: 40 Copynumber: 4.5 Consensus size: 40
82086378 AAACCAAGTA
* * *
82086388 CCTTCGGAATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
82086427 CCTTCGGGACTTAGCCCGGTTATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82086467 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
82086507 CCTTCGGGACTTAGCCTGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82086547 CCTTTGGGACTTGGCCCGG
1 CCTTCGGGACTTAGCCCGG
82086566 TTATCATCCG
Statistics
Matches: 124, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 13 0.10
40 111 0.90
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82094627 original size:40 final size:40
Alignment explanation
Indices: 82094553--82094760 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
82094543 CCTTCGGATT
*
82094553 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
* * *
82094592 TTAGCCCGGTTATTGTAACTCGCACAAATGTCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
82094632 TTAGCCCGGATATAGTAACTCGCACAAATACCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
82094672 TTAGCTCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
82094712 TTAGCCCAGAAATAGTCACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
82094752 TTGGCCCGG
1 TTAGCCCGG
82094761 TTATCATCCG
Statistics
Matches: 149, Mismatches: 18, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
39 5 0.03
40 144 0.97
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:82111465 original size:47 final size:47
Alignment explanation
Indices: 82111412--82111543 Score: 151
Period size: 47 Copynumber: 2.8 Consensus size: 47
82111402 GTGTGAATAA
* * * *
82111412 TACCTTGATTTGGCTATGGGCTATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCTATGATATAGGTACTTAGAGAGAAGT
* * * *
82111459 TACCTTGATTTGGTTACGGGCCAT-AGTATAGGTACTTAGGGATAAGT
1 TACCTTGATTTGGCTACGGGCTATGA-TATAGGTACTTAGAGAGAAGT
*
82111506 TACCTTGATTTGGCTACGGG-TCATGGTATAGGTACTTA
1 TACCTTGATTTGGCTACGGGCT-ATGATATAGGTACTTA
82111544 TCAATTGCGA
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
46 1 0.01
47 70 0.99
ACGTcount: A:0.23, C:0.12, G:0.28, T:0.36
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCTATGATATAGGTACTTAGAGAGAAGT
Found at i:82115308 original size:40 final size:40
Alignment explanation
Indices: 82115264--82115374 Score: 143
Period size: 40 Copynumber: 2.8 Consensus size: 40
82115254 TGAGTTACCA
* *
82115264 TAGTGAATCAGGAACAAATCCTATCCACTTTA-TATATTT
1 TAGTGAATCAGGAATAAATCCTATTCACTTTAGTATATTT
* * *
82115303 CTAGTGCATCAGGAATAAATCCTATTCACTTTAGTTTCTTT
1 -TAGTGAATCAGGAATAAATCCTATTCACTTTAGTATATTT
* *
82115344 TAGTGAATCAAGAATAGATCCTATTCACTTT
1 TAGTGAATCAGGAATAAATCCTATTCACTTT
82115375 TAATTCTCGA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 57 0.92
41 5 0.08
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (40 bp):
TAGTGAATCAGGAATAAATCCTATTCACTTTAGTATATTT
Found at i:82118913 original size:43 final size:43
Alignment explanation
Indices: 82118865--82118980 Score: 137
Period size: 42 Copynumber: 2.7 Consensus size: 43
82118855 CCCAGAGTGA
* *
82118865 TCTTACATGTAATCAAATATCGATGCCACTATCCTAGACAAGG
1 TCTTACATGTAATCAAATATCGATGCCAATATCCCAGACAAGG
* * *
82118908 TCTTACATGAAATCAAATA-CGATGCCAATGTCCCAGACATGG
1 TCTTACATGTAATCAAATATCGATGCCAATATCCCAGACAAGG
* *
82118950 TCTTACACGTAAATCATAA-GTCGATGCCAAT
1 TCTTACATGT-AATCA-AATATCGATGCCAAT
82118981 GTCTCAAACG
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
42 27 0.44
43 23 0.37
44 12 0.19
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (43 bp):
TCTTACATGTAATCAAATATCGATGCCAATATCCCAGACAAGG
Found at i:82118995 original size:44 final size:42
Alignment explanation
Indices: 82118865--82119003 Score: 136
Period size: 44 Copynumber: 3.2 Consensus size: 42
82118855 CCCAGAGTGA
* * * * * * *
82118865 TCTTACATGTAATCAAATATCGATGCCACTATCCTAGACAAGG
1 TCTTACACGAAATCAAATA-CGATGCCAATGTCCCAAACATGG
* *
82118908 TCTTACATGAAATCAAATACGATGCCAATGTCCCAGACATGG
1 TCTTACACGAAATCAAATACGATGCCAATGTCCCAAACATGG
* *
82118950 TCTTACACGTAAATCATAAGT-CGATGCCAATGTCTCAAACGTGG
1 TCTTACACG-AAATCA-AA-TACGATGCCAATGTCCCAAACATGG
82118994 TCTTACACGA
1 TCTTACACGA
82119004 TAACACATAT
Statistics
Matches: 84, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
42 27 0.32
43 25 0.30
44 31 0.37
45 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.27
Consensus pattern (42 bp):
TCTTACACGAAATCAAATACGATGCCAATGTCCCAAACATGG
Found at i:82120232 original size:28 final size:28
Alignment explanation
Indices: 82120192--82120254 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
82120182 GTCATTATCA
82120192 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
*** *
82120220 ACCCCATAAGTTATGGGACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
82120248 ACCCCAT
1 ACCCCAT
82120255 TAATATAGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:82125648 original size:28 final size:28
Alignment explanation
Indices: 82125608--82125670 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
82125598 GCCATTATCA
82125608 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* *
82125636 ACCCCATAAGTTATGAAACTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
82125664 ACCCCAT
1 ACCCCAT
82125671 TAATATGGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:82127071 original size:92 final size:92
Alignment explanation
Indices: 82126885--82127193 Score: 491
Period size: 92 Copynumber: 3.4 Consensus size: 92
82126875 ACGTGAGCTA
* * * * *
82126885 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-G-A-AAGCAGAATTTGCAAAAC-AGAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGGAAGAAACAGAAATTGAAAAACGAAAT
82126946 TTTGAAAATACCTCTGCATGTGACCCG
66 TTTGAAAATACCTCTGCATGTGACCCG
*
82126973 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGGAAGAAACAGAAATTGAAAAACGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGGAAGAAACAGAAATTGAAAAACGAAAT
82127038 TTTGAAAATACCTCTGCATGTGACCCG
66 TTTGAAAATACCTCTGCATGTGACCCG
82127065 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGGAAGAAACAGAAATTGAAAAACGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGGAAGAAACAGAAATTGAAAAACGAAAT
* *
82127130 TTTGAAAATACCTCGGCATGTGGCCCG
66 TTTGAAAATACCTCTGCATGTGACCCG
* * *
82127157 AGGCTCAACTCATCTTTTGCAATATGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
82127194 TTTTTGAAAA
Statistics
Matches: 205, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
88 35 0.17
89 1 0.00
90 1 0.00
91 15 0.07
92 153 0.75
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (92 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGGAAGAAACAGAAATTGAAAAACGAAAT
TTTGAAAATACCTCTGCATGTGACCCG
Found at i:82127262 original size:78 final size:78
Alignment explanation
Indices: 82127116--82127675 Score: 306
Period size: 78 Copynumber: 7.0 Consensus size: 78
82127106 GAAACAGAAA
* * * * *
82127116 TTGAAAAAC-GAAATTTTGAAAATACCTCGGCATGTGGCCCGAGGCTCAACTCATCTTTTGCAAT
1 TTGAAAAACAGAAA--TTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAAT
82127180 ATGAGTTGATTTTTTTT
62 ATGAGTTGATTTTTTTT
* *
82127197 TTGAAAAACAGAAATTCAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAACATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
82127262 GTTGA---TTTTT
66 GTTGATTTTTTTT
* *
82127272 TTGAAACTTAA-ATGAAGGTTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACCTCT
1 TTGAAA---AACA-GAA---ATTGAAAATACCTCAG-C--GTGTCCCGAGGCTCAACTCACCTCT
*
82127335 CGCAACATGAGTTGATTTTTTTT
56 CGCAATATGAGTTGATTTTTTTT
* * ** * **** *
82127358 TTGAAAAATAG-AATTTAAAATAGAATTTAAAAAGTCCTCGGCATGTGGCCTGAGACTCAACTCA
1 TTGAAAAACAGAAATTGAAAAT--ACCTCAGCGTGTCC-C-G-A---GG-CTCA-ACTC-A--C-
* *
82127422 CTTCTAGCAATATGAGTTGA--TTTCTT
52 C-TCTCGCAATATGAGTTGATTTTTTTT
** * ** *
82127448 TTGACGAATAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAG--CGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
* *
82127513 AAGTTGATTTTTTTG
64 GAGTTGATTTTTTTT
* ** * *
82127528 ATG-AGTA-A-AAATT-AAAATTACCTCAGCGTGTCCTGGGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAA-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
* *
82127589 AG-TCA--ATTTTT
65 AGTTGATTTTTTTT
* * ** * **
82127600 TTCAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCGCCTCTCATAATATG
1 TTGAAAA-ACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
82127665 AGTTAATTTTT
65 AGTTGATTTTT
82127676 GAAAACAGAA
Statistics
Matches: 368, Mismatches: 66, Indels: 92
0.70 0.13 0.17
Matches are distributed among these distances:
72 5 0.01
73 1 0.00
74 3 0.01
75 43 0.12
76 48 0.13
77 20 0.05
78 57 0.15
79 15 0.04
80 23 0.06
81 25 0.07
82 7 0.02
83 46 0.12
84 4 0.01
85 4 0.01
86 14 0.04
87 4 0.01
88 2 0.01
89 3 0.01
90 16 0.04
91 12 0.03
92 16 0.04
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (78 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTT
Found at i:82127328 original size:253 final size:249
Alignment explanation
Indices: 82127037--82127528 Score: 654
Period size: 253 Copynumber: 1.9 Consensus size: 249
82127027 AAAAACGAAA
*
82127037 TTTTGAAAATACCTCTGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
1 TTTTGAAAATACCTCTGCATGTGACCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTT
* *
82127101 TGGAAGAAACAGAAATTGAAAA-ACGAAATTTTGAAAA-TACCTCGGCATGTGGCCCGAGGCTCA
66 TGGAA-AAACAG-AATTGAAAATA-G-AA-TTTAAAAAGT-CCTCGGCATGTGGCCCGAGACTCA
* *
82127164 ACTCATCTT-TTGCAATATGAGTTGATTTTTTTTTTGAAAAACAGAAATTCAAAATACCTCAG-C
125 ACTCA-CTTCTAGCAATATGAGTTGA--TTTCTTTTGAAAAACAGAAATTCAAAATACCTCAGAC
* * *
82127227 GTGTCCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTTGAAACTTAAATGAAGG
187 GTGACCCAAGGCTCAACTCACCTCTCGCAACATAAGTTGATTTTTTTGAAACTTAAATGAAGG
82127290 TTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTT
1 TTTTGAAAATACCTCTG-CATGTGACCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGA---T
* * * *
82127354 TTTTTTGAAAAATAGAATTTAAAATAGAATTTAAAAAGTCCTCGGCATGTGGCCTGAGACTCAAC
62 TTTTTGGAAAAACAGAATTGAAAATAGAATTTAAAAAGTCCTCGGCATGTGGCCCGAGACTCAAC
** * *
82127419 TCACTTCTAGCAATATGAGTTGATTTCTTTTGACGAATAGAAATTGAAAATACCTCAGCACGTGA
127 TCACTTCTAGCAATATGAGTTGATTTCTTTTGAAAAACAGAAATTCAAAATACCTCAG-ACGTGA
* *
82127484 GCCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGA
191 CCCAAGGCTCAACTCACCTCTCGCAACATAAGTTGATTTTTTTGA
82127529 TGAGTAAAAA
Statistics
Matches: 211, Mismatches: 18, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
251 30 0.14
252 4 0.02
253 151 0.72
254 3 0.01
255 9 0.04
256 6 0.03
257 8 0.04
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (249 bp):
TTTTGAAAATACCTCTGCATGTGACCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTT
TGGAAAAACAGAATTGAAAATAGAATTTAAAAAGTCCTCGGCATGTGGCCCGAGACTCAACTCAC
TTCTAGCAATATGAGTTGATTTCTTTTGAAAAACAGAAATTCAAAATACCTCAGACGTGACCCAA
GGCTCAACTCACCTCTCGCAACATAAGTTGATTTTTTTGAAACTTAAATGAAGG
Found at i:82127329 original size:83 final size:78
Alignment explanation
Indices: 82127116--82127356 Score: 260
Period size: 83 Copynumber: 3.0 Consensus size: 78
82127106 GAAACAGAAA
* * * * * *
82127116 TTGAAAAAC-GAAATTTTGAAAATACCTCGGCATGTGGCCCGAGGCTCAACTCATCTTTTGCAAT
1 TTGAAAAACAG-AATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAAC
82127180 ATGAGTTGATTTTTTTT
65 ATGAGTTGA---TTTTT
* * *
82127197 TTGAAAAACAGAA-ATTCAAAATACCTC-AGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAAC
1 TTGAAAAACAGAATTTTGAAAATACCTCGA-CATGTGACCCGAGGCTCAACTCACCTCTCGCAAC
82127258 ATGAGTTGATTTTT
65 ATGAGTTGATTTTT
82127272 TTGAAACTTAA-ATGAAGGTTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTC
1 TTGAAA---AACA-GAA--TTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTC
82127336 GCAACATGAGTTGATTTTT
60 GCAACATGAGTTGATTTTT
82127355 TT
1 TT
82127357 TTTGAAAAAT
Statistics
Matches: 137, Mismatches: 11, Indels: 22
0.81 0.06 0.13
Matches are distributed among these distances:
75 11 0.08
77 1 0.01
78 40 0.29
80 13 0.09
81 24 0.18
82 2 0.01
83 46 0.34
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (78 bp):
TTGAAAAACAGAATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACCTCTCGCAACA
TGAGTTGATTTTT
Found at i:82127348 original size:161 final size:167
Alignment explanation
Indices: 82127024--82127379 Score: 440
Period size: 161 Copynumber: 2.1 Consensus size: 167
82127014 GAAACAGAAA
* * *
82127024 TTGAAAAAC-GAAATTTTGAAAATACCTCTGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAACAGAAA--TTCAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAAC
* *
82127088 ATGAGTTGATTTTTGGAAGAAACAGAAATTGAAAAACGAAATTTTGAAAATACCTCGGCATGTGG
63 ATGAGTTGATTTTT-GAAGAAACAGAAATTG--AAACG-AATTTTGAAAATACCTCGACATGTGA
* * * *
82127153 CCCGAGGCTCAACTCATCTTTTGCAATATGAGTTGATTTTTTTT
124 CCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTTT
*
82127197 TTGAAAAACAGAAATTCAAAATACCTCAGC-GTGTCCCGAGGCTCAACTCACCTCTCGCAACATG
1 TTGAAAAACAGAAATTCAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAACATG
** ** *
82127261 AGTTGATTTTT-TTGAAACTTAAA-TG-AA-G-GTTTTGAAAATACCTCGACATGTGACCCGAGG
66 AGTTGATTTTTGAAGAAACAGAAATTGAAACGAATTTTGAAAATACCTCGACATGTGACCCGAGG
82127321 CTCAACTCACCTCTCGCAACATGAGTTGATTTTTTTT
131 CTCAACTCACCTCTCGCAACATGAGTTGATTTTTTTT
* *
82127358 TTGAAAAATAG-AATTTAAAATA
1 TTGAAAAACAGAAATTCAAAATA
82127380 GAATTTAAAA
Statistics
Matches: 165, Mismatches: 17, Indels: 15
0.84 0.09 0.08
Matches are distributed among these distances:
160 10 0.06
161 72 0.44
163 1 0.01
164 2 0.01
167 2 0.01
168 8 0.05
170 43 0.26
172 14 0.08
173 9 0.05
174 4 0.02
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (167 bp):
TTGAAAAACAGAAATTCAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAACATG
AGTTGATTTTTGAAGAAACAGAAATTGAAACGAATTTTGAAAATACCTCGACATGTGACCCGAGG
CTCAACTCACCTCTCGCAACATGAGTTGATTTTTTTT
Found at i:82127377 original size:12 final size:12
Alignment explanation
Indices: 82127362--82127389 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
82127352 TTTTTTTTGA
82127362 AAAATAGAATTT
1 AAAATAGAATTT
82127374 AAAATAGAATTT
1 AAAATAGAATTT
82127386 AAAA
1 AAAA
82127390 AGTCCTCGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (12 bp):
AAAATAGAATTT
Found at i:82127583 original size:75 final size:75
Alignment explanation
Indices: 82127406--82127675 Score: 267
Period size: 76 Copynumber: 3.5 Consensus size: 75
82127396 CGGCATGTGG
* * * * * * *
82127406 CCTGAGACTCAACTCACTTCTAGCAATATGAGTTGATTTCTTTTGACGAATAGAAATTGAAAATA
1 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT-TTTTGAAGAGTAAAAATTGAAAATA
*
82127471 CCTCAGCACGTGAG
65 CCTCAG--CGTG-T
* * * *
82127485 CC-AAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGATGAGTAAAAATT-AAAATTA
1 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTGAAGAGTAAAAATTGAAAA-TA
82127548 CCTCAGCGTGT
65 CCTCAGCGTGT
* * * *
82127559 CCTGGGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTCAAAAG-ACAGAAATTGAAAAT
1 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTGAAGAGTA-A-AAATTGAAAAT
*
82127623 ACCTCAACGTGT
64 ACCTCAGCGTGT
* * **
82127635 CTTGAGGCTCAACTCGCCTCTCATAATATGAGTTAATTTTT
1 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
82127676 GAAAACAGAA
Statistics
Matches: 162, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
74 3 0.02
75 43 0.27
76 56 0.35
77 27 0.17
78 31 0.19
79 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (75 bp):
CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTTTGAAGAGTAAAAATTGAAAATAC
CTCAGCGTGT
Found at i:82140193 original size:3 final size:3
Alignment explanation
Indices: 82140187--82140251 Score: 64
Period size: 3 Copynumber: 21.7 Consensus size: 3
82140177 TGATAGTATG
82140187 AAT AAT ATAT ACA- AAT AAT AAT AAT AAAT AAT AAT AAT AAT -AT AAT
1 AAT AAT A-AT A-AT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT
* *
82140233 AAT ATT AAT ATT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AA
82140252 AAAAGCTATT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
2 5 0.10
3 40 0.77
4 7 0.13
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:82140205 original size:13 final size:13
Alignment explanation
Indices: 82140187--82140236 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
82140177 TGATAGTATG
82140187 AATAAT-ATATACA
1 AATAATAATA-ACA
*
82140200 AATAATAATAATA
1 AATAATAATAACA
*
82140213 AATAATAATAATA
1 AATAATAATAACA
82140226 ATATAATAATA
1 A-ATAATAATA
82140237 TTAATATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
13 22 0.65
14 12 0.35
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (13 bp):
AATAATAATAACA
Found at i:82140208 original size:16 final size:14
Alignment explanation
Indices: 82140163--82140236 Score: 69
Period size: 14 Copynumber: 5.1 Consensus size: 14
82140153 GTAATAGTGG
*
82140163 TAATAACATAATAA
1 TAATAAAATAATAA
* **
82140177 TGATAGTATGAATAA
1 TAATAAAAT-AATAA
82140192 TATATACAAATAATAA
1 TA-ATA-AAATAATAA
82140208 TAAT-AAATAATAA
1 TAATAAAATAATAA
*
82140221 TAATAATATAATAA
1 TAATAAAATAATAA
82140235 TA
1 TA
82140237 TTAATATTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
13 13 0.27
14 16 0.33
15 8 0.16
16 10 0.20
17 2 0.04
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (14 bp):
TAATAAAATAATAA
Found at i:82140275 original size:14 final size:14
Alignment explanation
Indices: 82140204--82140283 Score: 56
Period size: 14 Copynumber: 5.6 Consensus size: 14
82140194 TATACAAATA
82140204 ATAATAATAAATA--
1 ATAATAA-AAATATT
* *
82140217 ATAATAATAATATA
1 ATAATAAAAATATT
**
82140231 ATAATATTAATATT
1 ATAATAAAAATATT
*
82140245 AAAATAAAAAAGCTATT
1 ATAAT-AAAAA--TATT
82140262 ATAATAAAAATATT
1 ATAATAAAAATATT
*
82140276 AAAATAAA
1 ATAATAAA
82140284 GTAATAAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
12 4 0.07
13 7 0.13
14 27 0.50
15 3 0.06
16 5 0.09
17 8 0.15
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (14 bp):
ATAATAAAAATATT
Found at i:82152408 original size:44 final size:43
Alignment explanation
Indices: 82152345--82152503 Score: 166
Period size: 43 Copynumber: 3.7 Consensus size: 43
82152335 TATGTGTTAT
82152345 CATGTAAGACCACGTCTGGGACGTTGGCATCA-ACTTATGATTTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCATA-TT-TGATTTA
* * *
82152389 CATGTAAGACCATGTCTGGGACATCGGCATCATATTTGATTT-
1 CATGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTTA
* * *
82152431 CGTGTAAGACC-CTGTCTGGGATAG-TGGCATTGATATTTGA-TTA
1 CATGTAAGACCAC-GTCTGGGA-CGTTGGCA-TCATATTTGATTTA
* *
82152474 CATGTAAGACCGCGTCTGGGACTTTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
82152504 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
42 25 0.26
43 38 0.40
44 32 0.33
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTTA
Found at i:82160052 original size:24 final size:24
Alignment explanation
Indices: 82160023--82160072 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
82160013 AGAAAATAAA
* *
82160023 GACATAGATGTGATTGATTAGACT
1 GACATAAATGTGAATGATTAGACT
82160047 GACATAAATGTGAATGATTAGACT
1 GACATAAATGTGAATGATTAGACT
82160071 GA
1 GA
82160073 TAGTACATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (24 bp):
GACATAAATGTGAATGATTAGACT
Found at i:82162646 original size:48 final size:48
Alignment explanation
Indices: 82162588--82162748 Score: 150
Period size: 48 Copynumber: 3.4 Consensus size: 48
82162578 TTACCCATTT
*
82162588 GGGTTAAACCTAAACAAATAATGAATCATAATTCTTGGTCACACGTAA
1 GGGTTAAACCTACACAAATAATGAATCATAATTCTTGGTCACACGTAA
* * * * * * * *
82162636 GGGTTGAACCTACACGAAT--CGAATAAT-ATTGTCTAGTCACCCTTAA
1 GGGTTAAACCTACACAAATAATGAATCATAATTCT-TGGTCACACGTAA
* * * *
82162682 GGGTTAAACCTACACAAATAATAAATCATAGTCCCTGGTCA-ACCGTAA
1 GGGTTAAACCTACACAAATAATGAATCATAATTCTTGGTCACA-CGTAA
*
82162730 GGGTTGAACCTACACAAAT
1 GGGTTAAACCTACACAAAT
82162749 CGGATAATAG
Statistics
Matches: 86, Mismatches: 22, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
45 4 0.05
46 33 0.38
48 48 0.56
49 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.25
Consensus pattern (48 bp):
GGGTTAAACCTACACAAATAATGAATCATAATTCTTGGTCACACGTAA
Found at i:82162684 original size:46 final size:46
Alignment explanation
Indices: 82162625--82162789 Score: 181
Period size: 46 Copynumber: 3.5 Consensus size: 46
82162615 ATAATTCTTG
* *
82162625 GTCACACGTAAGGGTTGAACCTACACGAATCGAATAATATTGTCTA
1 GTCACCCGTAAGGGTTGAACCTACACAAATCGAATAATATTGTCTA
* * * *
82162671 GTCACCCTTAAGGGTTAAACCTACACAAAT--AATAAATCATAGTCCCTG
1 GTCACCCGTAAGGGTTGAACCTACACAAATCGAAT-AAT-ATTGT--CTA
* * *
82162719 GTCAACCGTAAGGGTTGAACCTACACAAATCGGATAATAGTGTCTA
1 GTCACCCGTAAGGGTTGAACCTACACAAATCGAATAATATTGTCTA
* *
82162765 ATCACTCGTAAGGGTTGAACCTACA
1 GTCACCCGTAAGGGTTGAACCTACA
82162790 AAACAATTAG
Statistics
Matches: 97, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
44 3 0.03
45 3 0.03
46 54 0.56
48 32 0.33
49 3 0.03
50 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (46 bp):
GTCACCCGTAAGGGTTGAACCTACACAAATCGAATAATATTGTCTA
Found at i:82162788 original size:94 final size:94
Alignment explanation
Indices: 82162588--82162789 Score: 280
Period size: 94 Copynumber: 2.1 Consensus size: 94
82162578 TTACCCATTT
* * * * *
82162588 GGGTTAAACCTAAACAAATAATGAATCATAATTCTTGGTCACACGTAAGGGTTGAACCTACACGA
1 GGGTTAAACCTACACAAATAATAAATCATAATCCCTGGTCACACGTAAGGGTTGAACCTACACAA
* * *
82162653 ATCGAATAATATTGTCTAGTCACCCTTAA
66 ATCGAATAATAGTGTCTAATCACCCGTAA
*
82162682 GGGTTAAACCTACACAAATAATAAATCATAGTCCCTGGTCA-ACCGTAAGGGTTGAACCTACACA
1 GGGTTAAACCTACACAAATAATAAATCATAATCCCTGGTCACA-CGTAAGGGTTGAACCTACACA
* *
82162746 AATCGGATAATAGTGTCTAATCACTCGTAA
65 AATCGAATAATAGTGTCTAATCACCCGTAA
*
82162776 GGGTTGAACCTACA
1 GGGTTAAACCTACA
82162790 AAACAATTAG
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
93 1 0.01
94 94 0.99
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (94 bp):
GGGTTAAACCTACACAAATAATAAATCATAATCCCTGGTCACACGTAAGGGTTGAACCTACACAA
ATCGAATAATAGTGTCTAATCACCCGTAA
Found at i:82164727 original size:43 final size:43
Alignment explanation
Indices: 82164666--82164751 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
82164656 CAGTCCCAAG
*
82164666 TGATTGTCCAGTTTCAATGTCTTGACTTTACAGATGTGGTGTT
1 TGATTGTCCAGTTTCAATGTCATGACTTTACAGATGTGGTGTT
82164709 TGATTGTCCAGTTTCAATGTCATGACTTTACAGATGTGGTGTT
1 TGATTGTCCAGTTTCAATGTCATGACTTTACAGATGTGGTGTT
82164752 GCGACATGGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.20, C:0.14, G:0.23, T:0.43
Consensus pattern (43 bp):
TGATTGTCCAGTTTCAATGTCATGACTTTACAGATGTGGTGTT
Found at i:82166783 original size:37 final size:38
Alignment explanation
Indices: 82166742--82166830 Score: 94
Period size: 36 Copynumber: 2.4 Consensus size: 38
82166732 TATTTTCAAG
* *
82166742 TAATTTATAATTTATAAACTGAAATAAGTT-TATATTT
1 TAATTTATAATTTATAAACTGAAATAAGTTCCATATTA
* *
82166779 TAA-TTA-ATTTTAATAAACTGAATTAAGTTCCATATTA
1 TAATTTATAATTT-ATAAACTGAAATAAGTTCCATATTA
* *
82166816 TAATTGATCATTTAT
1 TAATTTATAATTTAT
82166831 TTCATAAATT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
35 4 0.10
36 19 0.46
37 11 0.27
38 4 0.10
39 3 0.07
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.47
Consensus pattern (38 bp):
TAATTTATAATTTATAAACTGAAATAAGTTCCATATTA
Found at i:82169716 original size:4 final size:4
Alignment explanation
Indices: 82169707--82169736 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
82169697 GAGTGACGAA
82169707 CCTG CCTG CCTG CCTG CCTG CCTG CCTG CC
1 CCTG CCTG CCTG CCTG CCTG CCTG CCTG CC
82169737 ACGCTCCCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.53, G:0.23, T:0.23
Consensus pattern (4 bp):
CCTG
Found at i:82171071 original size:252 final size:252
Alignment explanation
Indices: 82170626--82171129 Score: 1008
Period size: 252 Copynumber: 2.0 Consensus size: 252
82170616 TTGTATGTAT
82170626 TATCATCATCATAATTATGTATTCTATTTATGTACCTCGGTAAAAAAAAATTAGAGTTACAATTT
1 TATCATCATCATAATTATGTATTCTATTTATGTACCTCGGTAAAAAAAAATTAGAGTTACAATTT
82170691 ATTTAGAAATTTTCTATTTTGGATTATAAGAAAACTGTCATGAAAGGGTTTTCCGTTTTTATTTA
66 ATTTAGAAATTTTCTATTTTGGATTATAAGAAAACTGTCATGAAAGGGTTTTCCGTTTTTATTTA
82170756 TTTTTTGTTTTTGCTTATTTTTGCTATTTTTTTGTTTATGGCATTGTTTCCCAAATTGGTGTCTT
131 TTTTTTGTTTTTGCTTATTTTTGCTATTTTTTTGTTTATGGCATTGTTTCCCAAATTGGTGTCTT
82170821 TTTTTCTATTGTTATCAGAACAAACGAGGTGGAAAAGTGAAGCTGCAGTCCATAGTG
196 TTTTTCTATTGTTATCAGAACAAACGAGGTGGAAAAGTGAAGCTGCAGTCCATAGTG
82170878 TATCATCATCATAATTATGTATTCTATTTATGTACCTCGGTAAAAAAAAATTAGAGTTACAATTT
1 TATCATCATCATAATTATGTATTCTATTTATGTACCTCGGTAAAAAAAAATTAGAGTTACAATTT
82170943 ATTTAGAAATTTTCTATTTTGGATTATAAGAAAACTGTCATGAAAGGGTTTTCCGTTTTTATTTA
66 ATTTAGAAATTTTCTATTTTGGATTATAAGAAAACTGTCATGAAAGGGTTTTCCGTTTTTATTTA
82171008 TTTTTTGTTTTTGCTTATTTTTGCTATTTTTTTGTTTATGGCATTGTTTCCCAAATTGGTGTCTT
131 TTTTTTGTTTTTGCTTATTTTTGCTATTTTTTTGTTTATGGCATTGTTTCCCAAATTGGTGTCTT
82171073 TTTTTCTATTGTTATCAGAACAAACGAGGTGGAAAAGTGAAGCTGCAGTCCATAGTG
196 TTTTTCTATTGTTATCAGAACAAACGAGGTGGAAAAGTGAAGCTGCAGTCCATAGTG
82171130 ATGCCCCTCT
Statistics
Matches: 252, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
252 252 1.00
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.45
Consensus pattern (252 bp):
TATCATCATCATAATTATGTATTCTATTTATGTACCTCGGTAAAAAAAAATTAGAGTTACAATTT
ATTTAGAAATTTTCTATTTTGGATTATAAGAAAACTGTCATGAAAGGGTTTTCCGTTTTTATTTA
TTTTTTGTTTTTGCTTATTTTTGCTATTTTTTTGTTTATGGCATTGTTTCCCAAATTGGTGTCTT
TTTTTCTATTGTTATCAGAACAAACGAGGTGGAAAAGTGAAGCTGCAGTCCATAGTG
Found at i:82191741 original size:47 final size:47
Alignment explanation
Indices: 82191674--82191932 Score: 237
Period size: 47 Copynumber: 5.6 Consensus size: 47
82191664 GCGAACGTCT
*
82191674 GAACTTGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
* * * *
82191721 GAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCA--TCC
* *
82191767 GAACTCGTTGAGTTGAGTCCGAATTTGTGAAATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
* * * * * * * * * *
82191814 GAAGTCGTTGAGTTGAGTCTGAGTTCACT--TATGGATGCGA-ACGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCATCC
*
82191860 GAACTTGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
*
82191907 GAACTCGTTGAGTTGAGTCTGAGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC
82191933 ACTTATGGAT
Statistics
Matches: 162, Mismatches: 36, Indels: 28
0.72 0.16 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 3 0.02
46 62 0.38
47 86 0.53
48 3 0.02
49 3 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
Found at i:82191783 original size:46 final size:46
Alignment explanation
Indices: 82191629--82191978 Score: 233
Period size: 46 Copynumber: 7.5 Consensus size: 46
82191619 TGAGCTTCCA
* *
82191629 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * * *
82191675 AACTTGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
82191722 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * *
82191768 AACTCGTTGAGTTGAGTCCGA----ATTTGTGAAATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G--TCCG
* * * *
82191815 AAGTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * * * *
82191861 AACTTGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* * *
82191908 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAATG-CCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
*
82191953 AAGCTCATTGAGTTGAGTCCGAGTTC
1 AA-CTCGTTGAGTTGAGTCCGAGTTC
82191979 GCTTGTGGGC
Statistics
Matches: 231, Mismatches: 43, Indels: 60
0.69 0.13 0.18
Matches are distributed among these distances:
42 11 0.05
43 10 0.04
45 11 0.05
46 95 0.41
47 76 0.33
48 7 0.03
50 10 0.04
51 11 0.05
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:82191788 original size:93 final size:93
Alignment explanation
Indices: 82191629--82191979 Score: 560
Period size: 93 Copynumber: 3.8 Consensus size: 93
82191619 TGAGCTTCCA
* *
82191629 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTTGTTGAGTTGAGTCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCC
82191694 GAGTTCGTGAAATGTAACTAGGCATCCG
66 GAGTTCGTGAAATGTAACTAGGCATCCG
*
82191722 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAGTCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCC
* *
82191787 GAATTTGTGAAATGTAACTAGGCATCCG
66 GAGTTCGTGAAATGTAACTAGGCATCCG
* * * *
82191815 AAGTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCTGAACTTGTTGAGTTGAGTCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCC
82191880 GAGTTCGTGAAATGTAACTAGGCATCCG
66 GAGTTCGTGAAATGTAACTAGGCATCCG
* * * * *
82191908 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAATG-CCCAAGCTCATTGAGTTGAGTC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAA-CTCGTTGAGTTGAGTC
82191972 CGAGTTCG
65 CGAGTTCG
82191980 CTTGTGGGCG
Statistics
Matches: 238, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
92 3 0.01
93 235 0.99
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (93 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGAGTCC
GAGTTCGTGAAATGTAACTAGGCATCCG
Found at i:82191966 original size:186 final size:186
Alignment explanation
Indices: 82191632--82191974 Score: 625
Period size: 186 Copynumber: 1.8 Consensus size: 186
82191622 GCTTCCAAAC
82191632 TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTTGTTGAGTTGAGTCCGAG
1 TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTTGTTGAGTTGAGTCCGAG
*
82191697 TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
66 TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAA
* *
82191762 TGTCCGAACTCGTTGAGTTGAGTCCGAATTTGTGAAATGTAACTAGGCATCCGAAG
131 TGTCCCAACTCATTGAGTTGAGTCCGAATTTGTGAAATGTAACTAGGCATCCGAAG
*
82191818 TCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCTGAACTTGTTGAGTTGAGTCCGAG
1 TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTTGTTGAGTTGAGTCCGAG
*
82191883 TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAA
66 TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAA
82191948 TG-CCCAAGCTCATTGAGTTGAGTCCGA
131 TGTCCCAA-CTCATTGAGTTGAGTCCGA
82191975 GTTCGCTTGT
Statistics
Matches: 151, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
185 4 0.03
186 147 0.97
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (186 bp):
TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTTGTTGAGTTGAGTCCGAG
TTCGTGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAA
TGTCCCAACTCATTGAGTTGAGTCCGAATTTGTGAAATGTAACTAGGCATCCGAAG
Found at i:82194534 original size:14 final size:14
Alignment explanation
Indices: 82194515--82194541 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
82194505 CCGAAACTAG
82194515 AAAGAAAAAAAAAC
1 AAAGAAAAAAAAAC
82194529 AAAGAAAAAAAAA
1 AAAGAAAAAAAAA
82194542 TGCTCATCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.04, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAAAAAC
Found at i:82195714 original size:39 final size:40
Alignment explanation
Indices: 82195619--82195880 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
82195609 TTGAATGATG
*
82195619 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
82195657 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
82195698 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
82195737 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
82195776 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
82195815 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
82195854 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
82195881 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:82209993 original size:47 final size:47
Alignment explanation
Indices: 82209884--82209994 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 47
82209874 CCGAGATAAG
* *
82209884 CACATAGTGCTTCATTGGAACAAATCCAGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTATAGTA
* * * *
82209931 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTA-TAGTA
82209978 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
82209995 ACTCAATGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 1 0.02
47 51 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTATAGTA
Found at i:82214609 original size:15 final size:15
Alignment explanation
Indices: 82214589--82214620 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
82214579 GTGTAATGCC
82214589 TAGTTGTATTCATAG
1 TAGTTGTATTCATAG
82214604 TAGTTGTATTCATAG
1 TAGTTGTATTCATAG
82214619 TA
1 TA
82214621 ATTTGTGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.47
Consensus pattern (15 bp):
TAGTTGTATTCATAG
Found at i:82218524 original size:14 final size:14
Alignment explanation
Indices: 82218505--82218531 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
82218495 TTCCCAACTC
82218505 ACCATAGCTATACT
1 ACCATAGCTATACT
82218519 ACCATAGCTATAC
1 ACCATAGCTATAC
82218532 CACGAGGTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.30, G:0.07, T:0.26
Consensus pattern (14 bp):
ACCATAGCTATACT
Found at i:82221325 original size:29 final size:28
Alignment explanation
Indices: 82221293--82221405 Score: 85
Period size: 29 Copynumber: 4.0 Consensus size: 28
82221283 TGATTCAAGA
*
82221293 ATATATATATAGTCCGCACACTCAGTGCT
1 ATATATATATA-TCCGCACACTTAGTGCT
*
82221322 ATATATA-ATCAACTCGCACACTTAGTGCT
1 ATATATATAT-ATC-CGCACACTTAGTGCT
*
82221351 ACATA-ATCATA-CTCGCACACTTAGTGCT
1 ATATATAT-ATATC-CGCACACTTAGTGCT
*
82221379 ACATAGTCA-AT-T-CGCACACTTAGTGCT
1 ATATA-T-ATATATCCGCACACTTAGTGCT
82221406 GCACAATTTA
Statistics
Matches: 73, Mismatches: 3, Indels: 18
0.78 0.03 0.19
Matches are distributed among these distances:
27 15 0.21
28 26 0.36
29 29 0.40
30 2 0.03
31 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (28 bp):
ATATATATATATCCGCACACTTAGTGCT
Found at i:82221401 original size:27 final size:27
Alignment explanation
Indices: 82221307--82221405 Score: 135
Period size: 27 Copynumber: 3.6 Consensus size: 27
82221297 ATATATAGTC
* *
82221307 CGCACACTCAGTGCTATATATAATCAACT
1 CGCACACTTAGTGC--TACATAATCAACT
82221336 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
* *
82221364 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
82221391 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82221406 GCACAATTTA
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
27 26 0.40
28 26 0.40
29 13 0.20
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:82229640 original size:27 final size:27
Alignment explanation
Indices: 82229590--82229679 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 27
82229580 NNNNNNNNNN
** *
82229590 ACTTAGTGCCGCATGGTCAATTCGCAC
1 ACTTAGTGCAACATAGTCAATTCGCAC
* * *
82229617 ACTTAGTGCATCATATTCATTTCGCAC
1 ACTTAGTGCAACATAGTCAATTCGCAC
*
82229644 ACTTAGTGCAACATAGTCAAATCGCAC
1 ACTTAGTGCAACATAGTCAATTCGCAC
82229671 ACTTAGTGC
1 ACTTAGTGC
82229680 TGTACAATTT
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (27 bp):
ACTTAGTGCAACATAGTCAATTCGCAC
Found at i:82233472 original size:16 final size:18
Alignment explanation
Indices: 82233430--82233472 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
82233420 CCTTTTCTCA
82233430 TTATTATTATTATTTACTT
1 TTATT-TTATTATTTACTT
82233449 TTATTTTTATT-TTTA-TT
1 TTA-TTTTATTATTTACTT
82233466 TTATTTT
1 TTATTTT
82233473 CTCTTTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 4 0.17
17 5 0.22
18 4 0.17
19 8 0.35
20 2 0.09
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (18 bp):
TTATTTTATTATTTACTT
Found at i:82233472 original size:22 final size:22
Alignment explanation
Indices: 82233433--82233490 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 22
82233423 TTTCTCATTA
*
82233433 TTATTATTATTTACTTTTATTT
1 TTATTATTATTTACTTTTATCT
* *
82233455 TTATTTTTATTTTA-TTTTCTCT
1 TTATTATTA-TTTACTTTTATCT
*
82233477 TTATTAGT-TTTACT
1 TTATTATTATTTACT
82233491 AGTTTTACTT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
20 4 0.14
21 1 0.03
22 20 0.69
23 4 0.14
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.72
Consensus pattern (22 bp):
TTATTATTATTTACTTTTATCT
Found at i:82233623 original size:15 final size:16
Alignment explanation
Indices: 82233592--82233624 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
82233582 TCATTTGCAT
82233592 TTATTTTACTTTATGA
1 TTATTTTACTTTATGA
*
82233608 TTATTTT-CTTTTTGA
1 TTATTTTACTTTATGA
82233623 TT
1 TT
82233625 TTATTCATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (16 bp):
TTATTTTACTTTATGA
Found at i:82235029 original size:6 final size:6
Alignment explanation
Indices: 82235009--82235050 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
82234999 ATTAAGTCCA
* *
82235009 TTTA-T TTTA-T TTTATT TTTATT TTTATG ATTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
82235051 CTTAGACTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
5 9 0.28
6 23 0.72
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:82244650 original size:30 final size:29
Alignment explanation
Indices: 82244616--82244676 Score: 95
Period size: 30 Copynumber: 2.1 Consensus size: 29
82244606 AAACGGAAGT
* *
82244616 TTTGGCACTAAGTGTGTGATTTAAACTAGC
1 TTTGGCACTAAGTATGCGATTT-AACTAGC
82244646 TTTGGCACTAAGTATGCGATTTAACTAGC
1 TTTGGCACTAAGTATGCGATTTAACTAGC
82244675 TT
1 TT
82244677 CGGCTACTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.31
30 20 0.69
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (29 bp):
TTTGGCACTAAGTATGCGATTTAACTAGC
Found at i:82246234 original size:81 final size:81
Alignment explanation
Indices: 82246133--82246363 Score: 336
Period size: 81 Copynumber: 2.9 Consensus size: 81
82246123 ATTACCAAAG
* * *
82246133 TACCCTTGATTTATAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
82246198 TACAGAATTACCATTT
66 TACAGAATTACCATTT
* * * *
82246214 TACCCTCGATTTATAGAATTACCATTTTACCCTCGACTTACAGAATTATCGTTTTACCCTCAATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
* *
82246279 TATAGAATTACTATTT
66 TACAGAATTACCATTT
* * * * *
82246295 TACCCTCAATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCTTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
82246360 TACA
66 TACA
82246364 AAACTACTAA
Statistics
Matches: 131, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 131 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
TACAGAATTACCATTT
Found at i:82246363 original size:27 final size:27
Alignment explanation
Indices: 82246133--82246361 Score: 305
Period size: 27 Copynumber: 8.5 Consensus size: 27
82246123 ATTACCAAAG
* *
82246133 TACCCTTGATTTATAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
82246160 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
82246187 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
82246214 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
82246241 TACCCTCGACTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
82246268 TACCCTCAATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
82246295 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
82246322 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
82246349 TACCTTCGATTTA
1 TACCCTCGATTTA
82246362 CAAAACTACT
Statistics
Matches: 181, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 181 1.00
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:82246379 original size:27 final size:27
Alignment explanation
Indices: 82246349--82246412 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
82246339 ATTACTGTTT
*
82246349 TACCTTCGATTTACAAAACTACTAAAA
1 TACCTTCGATTTACAAAACTACCAAAA
* *
82246376 TACCCTT-GGTTTACAAAATTACCAAAA
1 TA-CCTTCGATTTACAAAACTACCAAAA
*
82246403 TACCCTCGAT
1 TACCTTCGAT
82246413 CAGTAAAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
26 3 0.10
27 23 0.77
28 4 0.13
ACGTcount: A:0.39, C:0.25, G:0.06, T:0.30
Consensus pattern (27 bp):
TACCTTCGATTTACAAAACTACCAAAA
Found at i:82246412 original size:54 final size:54
Alignment explanation
Indices: 82246349--82246679 Score: 224
Period size: 54 Copynumber: 6.1 Consensus size: 54
82246339 ATTACTGTTT
* * * **
82246349 TACCTTCGATTTACAAAACTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * * *
82246403 TACCCTCGA-TCAGTAAAATTACCAAAATACCC-TGGTCTGTAAAATTGCTAAAA
1 TACCCTCGATTTA-CAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
** * *
82246456 TACCC-CTGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* *** * ***
82246510 TACCACT-GGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTCGATTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * * * **
82246564 TACCC-CTAATTTACAAAGTTA-TAGAAATACCCTTGACTTTCTAAAAATTATAAAAA
1 TACCCTC-GATTTACAAAATTACCA-AAATACCCTTG-GTTTGT-AAAATTACCAAAA
* * * ** * *
82246620 TACCATTGGTTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
*
82246674 CACCCT
1 TACCCT
82246680 TGTAGGATGA
Statistics
Matches: 214, Mismatches: 50, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
52 1 0.00
53 45 0.21
54 121 0.57
55 9 0.04
56 37 0.17
57 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:82246476 original size:80 final size:81
Alignment explanation
Indices: 82246363--82246569 Score: 249
Period size: 80 Copynumber: 2.6 Consensus size: 81
82246353 TTCGATTTAC
* * * **
82246363 AAAACTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACCA
82246427 AAATACC-CTGGTCTGT
65 AAATACCACTGGTCTGT
* * **
82246443 AAAATTGCTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
*
82246508 AATACCACTGGTTTGT
66 AATACCACTGGTCTGT
* ** *
82246524 GAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCC
1 AAAATTACTAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCC
82246570 TAATTTACAA
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 2 0.02
80 63 0.58
81 44 0.40
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.28
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
AATACCACTGGTCTGT
Found at i:82246563 original size:81 final size:81
Alignment explanation
Indices: 82246390--82246571 Score: 244
Period size: 81 Copynumber: 2.3 Consensus size: 81
82246380 CTTGGTTTAC
* * *
82246390 AAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCAAAATACCCTGGTCTGTAAAATTGCTAA
1 AAAATTACCAAAATACCCCTAGATCAGTAAAATTACCAAAATACCCTGGTCTGTAAAATTACCAA
*
82246454 AATACCCCTGATTTGT
66 AATACCCCTAATTTGT
** * * *
82246470 AAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCG
1 AAAATTACCAAAATACCCCTAGATCAGTAAAATTACCAAAATACC-CTGGTCTGTAAAATTACCA
82246534 AAATA-CCCTCAATTTGT
65 AAATACCCCT-AATTTGT
82246551 AAAATTACCAAAATACCCCTA
1 AAAATTACCAAAATACCCCTA
82246572 ATTTACAAAG
Statistics
Matches: 90, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
80 39 0.43
81 51 0.57
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTAGATCAGTAAAATTACCAAAATACCCTGGTCTGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:82246574 original size:27 final size:27
Alignment explanation
Indices: 82246363--82246575 Score: 209
Period size: 27 Copynumber: 7.9 Consensus size: 27
82246353 TTCGATTTAC
* * * * **
82246363 AAAACTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGATTTGT
**
82246390 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* *
82246417 AAAATTACCAAAATA-CCCTGGTCTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
82246443 AAAATTGCTAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
82246470 AAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
* *
82246497 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
82246524 GAAATTACCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
*
82246551 AAAATTACCAAAATACCCCTAATTT
1 AAAATTACCAAAATACCCCTGATTT
82246576 ACAAAGTTAT
Statistics
Matches: 155, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
26 25 0.16
27 126 0.81
28 4 0.03
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:82246755 original size:27 final size:26
Alignment explanation
Indices: 82246725--82246803 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 26
82246715 AAAAAAACCA
* *
82246725 TAAAGACCCTGTATGGTGAAGTGATCG
1 TAAAG-CCCTGTATGGTAAAGTGACCG
82246752 TAAAGCCCT-TATAGGGTAAAGTGACCG
1 TAAAGCCCTGTAT--GGTAAAGTGACCG
* *
82246779 TAATACCCCTGTATGGTAAATTGAC
1 TAA-AGCCCTGTATGGTAAAGTGAC
82246804 GAATATGCCC
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
25 3 0.07
26 4 0.09
27 29 0.66
28 5 0.11
29 3 0.07
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TAAAGCCCTGTATGGTAAAGTGACCG
Found at i:82247947 original size:25 final size:25
Alignment explanation
Indices: 82247909--82247999 Score: 155
Period size: 25 Copynumber: 3.6 Consensus size: 25
82247899 AGGAAGTGCT
* *
82247909 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
82247934 AAAAGGGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
82247959 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
82247984 AAAAGGGCTTTGCCCC
1 AAAAGGGCTTTGCCCC
82248000 GGTTATTAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:82248016 original size:24 final size:25
Alignment explanation
Indices: 82247909--82248016 Score: 91
Period size: 25 Copynumber: 4.4 Consensus size: 25
82247899 AGGAAGTGCT
* * *
82247909 AAAAG-GGCTATGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGGTTATC
* *
82247933 GAAAAG-GGCTTTGCCCCAGTTTACC
1 -AAAAGAGGCTTTGCCCCAGGTTATC
*
82247958 AAAA-AGGGCTTTGCCCCAGTTTATC
1 AAAAGA-GGCTTTGCCCCAGGTTATC
*
82247983 AAAA-AGGGCTTTGCCCC-GGTTATT
1 AAAAGA-GGCTTTGCCCCAGGTTATC
82248007 AAAAGAGGCT
1 AAAAGAGGCT
82248017 AGGCCTCCAG
Statistics
Matches: 76, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
24 17 0.22
25 59 0.78
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGGTTATC
Found at i:82248027 original size:50 final size:50
Alignment explanation
Indices: 82247907--82248028 Score: 142
Period size: 50 Copynumber: 2.5 Consensus size: 50
82247897 GGAGGAAGTG
* *
82247907 CTAAAAG-GGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTA
1 CTAAAAGAGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGGTTA
* * *
82247956 CCAAAA-AGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGCCCC-GGTTA
1 CTAAAAGA-GGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGGTTA
* *
82248005 TTAAAAGAGGCTAGGCCTCCAGTT
1 CTAAAAGAGGCTATGCC-CCAGTT
82248029 ATATGATAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
49 20 0.33
50 40 0.67
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (50 bp):
CTAAAAGAGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGGTTA
Found at i:82248268 original size:31 final size:31
Alignment explanation
Indices: 82248224--82248333 Score: 168
Period size: 31 Copynumber: 3.6 Consensus size: 31
82248214 CGTTTACAAT
* *
82248224 AAAA-GCTTCGGCCCAATGATATCATTTATG
1 AAAAGGCTTCGGCCCAGTGATATGATTTATG
*
82248254 AAAAGGCTTTGGCCCAGTGATATGATTTATG
1 AAAAGGCTTCGGCCCAGTGATATGATTTATG
*
82248285 ATAAGGCTTCGGCCCAGTGATATGATTTATG
1 AAAAGGCTTCGGCCCAGTGATATGATTTATG
*
82248316 AAAAGGTTTCGGCCCAGT
1 AAAAGGCTTCGGCCCAGT
82248334 AACCATTAAA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 4 0.06
31 68 0.94
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAAGGCTTCGGCCCAGTGATATGATTTATG
Found at i:82250337 original size:27 final size:27
Alignment explanation
Indices: 82250318--82250440 Score: 210
Period size: 27 Copynumber: 4.6 Consensus size: 27
82250308 ATTACCAAAG
*
82250318 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
82250345 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
82250372 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
82250399 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
82250426 TACCCTCGACTTACA
1 TACCCTCGATTTACA
82250441 AAACTACTAA
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.27, C:0.26, G:0.10, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:82250456 original size:27 final size:27
Alignment explanation
Indices: 82250426--82250488 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
82250416 ATTACCATTT
82250426 TACCCTCGACTTACAAAACTACTAAAA
1 TACCCTCGACTTACAAAACTACTAAAA
* ** * *
82250453 TACCCTTGGTTTACAAAATTACTGAAA
1 TACCCTCGACTTACAAAACTACTAAAA
82250480 TACCCTCGA
1 TACCCTCGA
82250489 TCAGTAAAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.27, G:0.08, T:0.27
Consensus pattern (27 bp):
TACCCTCGACTTACAAAACTACTAAAA
Found at i:82250457 original size:54 final size:54
Alignment explanation
Indices: 82250345--82250474 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 54
82250335 ATTACCGTTT
* * * * ****
82250345 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGACTTACAAAACTACCAAAA
* *
82250399 TACCCTCGATTTATAGAATTACCATTTTACCCTCGACTTACAAAACTACTAAAA
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGACTTACAAAACTACCAAAA
* * *
82250453 TACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
82250475 TGAAATACCC
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 62 1.00
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGACTTACAAAACTACCAAAA
Found at i:82250457 original size:81 final size:81
Alignment explanation
Indices: 82250318--82250474 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
82250308 ATTACCAAAG
* * * * ****
82250318 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGACTTACAAAACTACCAAAATACCCTCGATT
*
82250383 TACAGAATTACCGTTT
66 TACAAAATTACCGTTT
* * *
82250399 TACCCTCGATTTATAGAATTACCATTTTACCCTCGACTTACAAAACTACTAAAATACCCTTGGTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGACTTACAAAACTACCAAAATACCCTCGATT
82250464 TACAAAATTAC
66 TACAAAATTAC
82250475 TGAAATACCC
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.36
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGACTTACAAAACTACCAAAATACCCTCGATT
TACAAAATTACCGTTT
Found at i:82250484 original size:54 final size:52
Alignment explanation
Indices: 82250426--82250536 Score: 125
Period size: 54 Copynumber: 2.1 Consensus size: 52
82250416 ATTACCATTT
* * *
82250426 TACCCTCGACTTA-CAAAACTACTAAAATACCCTTGGTTTACAAAATTACTGAAA
1 TACCCTCGA-TCAGCAAAACTACCAAAATACCC-TGGTCTACAAAATTACT-AAA
* * **
82250480 TACCCTCGATCAGTAAAATTACCAAAATACCCTGGTCTGTAAAATTACTAAA
1 TACCCTCGATCAGCAAAACTACCAAAATACCCTGGTCTACAAAATTACTAAA
82250532 TACCC
1 TACCC
82250537 CTGGTTTGTA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
52 8 0.16
53 16 0.33
54 25 0.51
ACGTcount: A:0.40, C:0.25, G:0.08, T:0.27
Consensus pattern (52 bp):
TACCCTCGATCAGCAAAACTACCAAAATACCCTGGTCTACAAAATTACTAAA
Found at i:82250484 original size:81 final size:80
Alignment explanation
Indices: 82250305--82250489 Score: 199
Period size: 81 Copynumber: 2.3 Consensus size: 80
82250295 CTCAAATTGT
* * * * * **
82250305 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGT
1 AAAATTACGAAA-TACCCTCGATTTATAGAATTACCATTTTACCCTCGACTTACAAAACTACCAA
**
82250370 TTTACCCTCGATTTAC
65 AATACCCTCGATTTAC
* *** *
82250386 AGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGACTTACAAAACTACTAA
1 AAAATTA-CGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCGACTTACAAAACTACCAA
* *
82250451 AATACCCTTGGTTTAC
65 AATACCCTCGATTTAC
82250467 AAAATTACTGAAATACCCTCGAT
1 AAAATTAC-GAAATACCCTCGAT
82250490 CAGTAAAATT
Statistics
Matches: 82, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
80 1 0.01
81 80 0.98
82 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.09, T:0.34
Consensus pattern (80 bp):
AAAATTACGAAATACCCTCGATTTATAGAATTACCATTTTACCCTCGACTTACAAAACTACCAAA
ATACCCTCGATTTAC
Found at i:82250497 original size:27 final size:25
Alignment explanation
Indices: 82250467--82250563 Score: 86
Period size: 26 Copynumber: 3.7 Consensus size: 25
82250457 CTTGGTTTAC
82250467 AAAATTACTGAAATACCCTCGATCAGT
1 AAAATTACT-AAATACCCT-GATCAGT
* * *
82250494 AAAATTACCAAAATACCCTGGTCTGT
1 AAAATTA-CTAAATACCCTGATCAGT
* **
82250520 AAAATTACTAAATACCCCTGGTTTGT
1 AAAATTACTAAATA-CCCTGATCAGT
*
82250546 AAAATTACCAAAATACCC
1 AAAATTA-CTAAATACCC
82250564 CTAGTTTGTA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
25 6 0.10
26 32 0.52
27 22 0.36
28 1 0.02
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (25 bp):
AAAATTACTAAATACCCTGATCAGT
Found at i:82250570 original size:27 final size:27
Alignment explanation
Indices: 82250492--82250754 Score: 219
Period size: 27 Copynumber: 9.7 Consensus size: 27
82250482 CCCTCGATCA
*
82250492 GTAAAATTACCAAAATA-CCCTGGTCT
1 GTAAAATTACCAAAATACCCCTGGTTT
*
82250518 GTAAAATTA-CTAAATACCCCTGGTTT
1 GTAAAATTACCAAAATACCCCTGGTTT
*
82250544 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTGGTTT
*
82250571 GTAAAATTACCAAAATACCACTGGTTT
1 GTAAAATTACCAAAATACCCCTGGTTT
* * **
82250598 GTGAAATTACCGAAATA-CCCTCAATTT
1 GTAAAATTACCAAAATACCCCT-GGTTT
*
82250625 GTAAAATTACCAAAATACCCCTGATTT
1 GTAAAATTACCAAAATACCCCTGGTTT
** * * * *
82250652 ACAAAGTTACAAAAATACCCTTGCCTTT
1 GTAAAATTACCAAAATACCCCTG-GTTT
* * **
82250680 CTAAAAATTA-TAGAAATACCATTGGTTT
1 GT-AAAATTACCA-AAATACCCCTGGTTT
** ** *
82250708 ACAAAATTACTGAAATACCCTTGGTTT
1 GTAAAATTACCAAAATACCCCTGGTTT
* * *
82250735 GTAGATTTACCAAAACACCC
1 GTAAAATTACCAAAATACCC
82250755 TTGTAGGATG
Statistics
Matches: 192, Mismatches: 37, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
25 6 0.03
26 29 0.15
27 129 0.67
28 12 0.06
29 16 0.08
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTGGTTT
Found at i:82250826 original size:27 final size:27
Alignment explanation
Indices: 82250796--82250874 Score: 115
Period size: 27 Copynumber: 2.9 Consensus size: 27
82250786 TAGGTAAAAA
*
82250796 GACCGTAAAGCCCCTGTAGGGTGAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
82250823 GACCGTAAAGCCCCTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
* *
82250850 GACTGTAATA-CCCCTGTATGGTAAA
1 GACCGTAA-AGCCCCTGTAGGGTAAA
82250875 ATAGCGAATA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
27 47 0.98
28 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.22
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:82251703 original size:25 final size:25
Alignment explanation
Indices: 82251665--82251734 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
82251655 AGGAAGTGCT
* *
82251665 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
82251690 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
82251715 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
82251735 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:82251747 original size:24 final size:24
Alignment explanation
Indices: 82251664--82251759 Score: 95
Period size: 25 Copynumber: 3.9 Consensus size: 24
82251654 GAGGAAGTGC
*
82251664 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTATGCCCCAGTTTA-T
* *
82251689 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTATGCCCCAGTTTAT
* *
82251713 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTATGCCCCAGTTTAT
*
82251737 TAAAAGAGGCTAGGCCTCCAGTT
1 TAAAAG-GGCTATGCC-CCAGTT
82251760 ATATGATAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
23 5 0.08
24 11 0.18
25 43 0.72
26 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTATGCCCCAGTTTAT
Found at i:82251758 original size:50 final size:50
Alignment explanation
Indices: 82251665--82251759 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
82251655 AGGAAGTGCT
**
82251665 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
* **
82251715 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CCAGTT
82251760 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:82252061 original size:31 final size:31
Alignment explanation
Indices: 82251955--82252064 Score: 148
Period size: 31 Copynumber: 3.5 Consensus size: 31
82251945 CGTTTACAGT
* *
82251955 AAAGGCTTCGGTCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
82251986 AAAGGCTTTGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
82252017 TAAGGCTTCGGCCCAGTCATATGGTTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
82252048 AAAGGATTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
82252065 AACCATTAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:82257396 original size:40 final size:40
Alignment explanation
Indices: 82257325--82257400 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
82257315 CGGTACCTTA
* * *
82257325 TGGTGTGTAGGGTTGGATGGGTTGATATTATCCCCATATT
1 TGGTGTGTAGGGTAGGATCGGTCGATATTATCCCCATATT
*
82257365 TGGTGTGTAGGGATAGG-TCGGTCGATTTTATCCCCA
1 TGGTGTGTAGGG-TAGGATCGGTCGATATTATCCCCA
82257401 CATGGTGTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 28 0.90
41 3 0.10
ACGTcount: A:0.17, C:0.13, G:0.33, T:0.37
Consensus pattern (40 bp):
TGGTGTGTAGGGTAGGATCGGTCGATATTATCCCCATATT
Found at i:82265707 original size:35 final size:35
Alignment explanation
Indices: 82265667--82265736 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
82265657 ACATAATTTA
82265667 ATTCAACAGTGCAACAGACTTACGGATATTCACAG
1 ATTCAACAGTGCAACAGACTTACGGATATTCACAG
*
82265702 ATTCAACAGTGTAACAGACTTACGGATATTCACAG
1 ATTCAACAGTGCAACAGACTTACGGATATTCACAG
82265737 GCTCAGAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.24
Consensus pattern (35 bp):
ATTCAACAGTGCAACAGACTTACGGATATTCACAG
Found at i:82273164 original size:26 final size:26
Alignment explanation
Indices: 82273135--82273197 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
82273125 ATATACACCG
* *
82273135 GCTCAAAGCTTACTAAATATATAATA
1 GCTCAAAGCCTACTAAATATACAATA
* *
82273161 GCTCGAAGCCTACTAAATATACAATG
1 GCTCAAAGCCTACTAAATATACAATA
*
82273187 GCACAAAGCCT
1 GCTCAAAGCCT
82273198 GCTACACCTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.41, C:0.22, G:0.13, T:0.24
Consensus pattern (26 bp):
GCTCAAAGCCTACTAAATATACAATA
Found at i:82274007 original size:29 final size:29
Alignment explanation
Indices: 82273966--82274029 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
82273956 GGGTAGATTG
** *
82273966 AAAGATTGGAGATTT-AAAGTTGGGTGGAA
1 AAAGATTAAAGATTTGAAA-TTGGCTGGAA
*
82273995 AAAGATTAAAGATTTGAAATTGGCTGGAT
1 AAAGATTAAAGATTTGAAATTGGCTGGAA
82274024 AAAGAT
1 AAAGAT
82274030 CAAATTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.42, C:0.02, G:0.28, T:0.28
Consensus pattern (29 bp):
AAAGATTAAAGATTTGAAATTGGCTGGAA
Found at i:82274931 original size:19 final size:21
Alignment explanation
Indices: 82274898--82274949 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
82274888 ATGTTAAACA
*
82274898 TGAA-TAAAATAA-ATCTTAT
1 TGAATTAACATAACATCTTAT
82274917 TGAATTAACATAATCATCTTAT
1 TGAATTAACATAA-CATCTTAT
82274939 TGAATTAACAT
1 TGAATTAACAT
82274950 GAATAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 4 0.14
20 7 0.24
22 18 0.62
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.38
Consensus pattern (21 bp):
TGAATTAACATAACATCTTAT
Found at i:82277810 original size:15 final size:16
Alignment explanation
Indices: 82277790--82277822 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
82277780 GGTTTTACAA
82277790 TATTTCTATG-AGGGT
1 TATTTCTATGAAGGGT
82277805 TATTTCTATGAAGGGT
1 TATTTCTATGAAGGGT
82277821 TA
1 TA
82277823 CTTCCAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.24, C:0.06, G:0.24, T:0.45
Consensus pattern (16 bp):
TATTTCTATGAAGGGT
Found at i:82278383 original size:35 final size:35
Alignment explanation
Indices: 82278337--82278407 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
82278327 AAAAGTTCCA
* *
82278337 ACAAAGGGCTGAAACGCATTTCCAAGAAATAGATC
1 ACAAAAGGCTGAAACACATTTCCAAGAAATAGATC
82278372 ACAAAAGGCTGAAACACATTTCCAAGAAATAGATC
1 ACAAAAGGCTGAAACACATTTCCAAGAAATAGATC
82278407 A
1 A
82278408 TTAGATAAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.46, C:0.20, G:0.17, T:0.17
Consensus pattern (35 bp):
ACAAAAGGCTGAAACACATTTCCAAGAAATAGATC
Found at i:82288944 original size:20 final size:20
Alignment explanation
Indices: 82288919--82288993 Score: 132
Period size: 20 Copynumber: 3.8 Consensus size: 20
82288909 ATGTGGTCGT
*
82288919 ACGCCCATGTGGCTTGGCAC
1 ACGCCCGTGTGGCTTGGCAC
82288939 ACGCCCGTGTGGCTTGGCAC
1 ACGCCCGTGTGGCTTGGCAC
82288959 ACGCCCGTGTGGCTTGGCAC
1 ACGCCCGTGTGGCTTGGCAC
*
82288979 ACGCCTGTGTGGCTT
1 ACGCCCGTGTGGCTT
82288994 AGAACATGAC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.11, C:0.33, G:0.33, T:0.23
Consensus pattern (20 bp):
ACGCCCGTGTGGCTTGGCAC
Found at i:82289007 original size:40 final size:40
Alignment explanation
Indices: 82288926--82289007 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
82288916 CGTACGCCCA
* * *
82288926 TGTGGCTTGGCACACGCCCGTGTGGCTTGGCACACGCCCG
1 TGTGGCTTGGCACACGCCCGTGTGGCTTAGAACACGACCG
* *
82288966 TGTGGCTTGGCACACGCCTGTGTGGCTTAGAACATGACCG
1 TGTGGCTTGGCACACGCCCGTGTGGCTTAGAACACGACCG
82289006 TG
1 TG
82289008 CCCCCAGCCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.13, C:0.29, G:0.34, T:0.23
Consensus pattern (40 bp):
TGTGGCTTGGCACACGCCCGTGTGGCTTAGAACACGACCG
Found at i:82293407 original size:47 final size:47
Alignment explanation
Indices: 82293329--82293421 Score: 143
Period size: 47 Copynumber: 2.0 Consensus size: 47
82293319 CTTAAATTCG
* * *
82293329 AAGGGCTACCCCAGGGGACACATGGCTGTGTAGA-ATGACCGTGTGTA
1 AAGGGCTACCCCAGGGGACACACGGCCGTGTA-ACATGACAGTGTGTA
82293376 AAGGGCTACCCCAGGGGACACACGGCCGTGTAACATGACAGTGTGT
1 AAGGGCTACCCCAGGGGACACACGGCCGTGTAACATGACAGTGTGT
82293422 CGCACACGGC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
46 1 0.02
47 41 0.98
ACGTcount: A:0.26, C:0.24, G:0.33, T:0.17
Consensus pattern (47 bp):
AAGGGCTACCCCAGGGGACACACGGCCGTGTAACATGACAGTGTGTA
Found at i:82294282 original size:43 final size:42
Alignment explanation
Indices: 82294224--82294380 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 42
82294214 ATGCCATATC
* * * *
82294224 CCAGATATGGTCTTACATGTTATCACATATCAATGCCACTTT
1 CCAGACATGGTCTTACATGTAATCACATATCAATGCCAATGT
* * * * * *
82294266 CCTAGACAGGGTCTTACACGAAATCGA-TTAACAATACCAATGT
1 CC-AGACATGGTCTTACATGTAATC-ACATATCAATGCCAATGT
82294309 CGCAGACATGGTCTTACATGTAATCACA-ATACAATGCCAATGT
1 C-CAGACATGGTCTTACATGTAATCACATAT-CAATGCCAATGT
82294352 CCCAGACATGGTCTTACATGTAATCACAT
1 -CCAGACATGGTCTTACATGTAATCACAT
82294381 CTCAGTAACC
Statistics
Matches: 92, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
42 4 0.04
43 85 0.92
44 3 0.03
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (42 bp):
CCAGACATGGTCTTACATGTAATCACATATCAATGCCAATGT
Found at i:82295624 original size:21 final size:21
Alignment explanation
Indices: 82295600--82295662 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
82295590 CATGAGTGCT
*
82295600 CACACGGGCGTGTGTGCCCTC
1 CACACGGGCGTGTGTGGCCTC
* * *
82295621 CACACGAGCATGTGTGGCCTT
1 CACACGGGCGTGTGTGGCCTC
*
82295642 CACATGGGCGTGTGTGGCCTC
1 CACACGGGCGTGTGTGGCCTC
82295663 TAAATGGGCA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.13, C:0.32, G:0.33, T:0.22
Consensus pattern (21 bp):
CACACGGGCGTGTGTGGCCTC
Found at i:82295669 original size:21 final size:21
Alignment explanation
Indices: 82295631--82295671 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
82295621 CACACGAGCA
*
82295631 TGTGTGGCCTTCACATGGGCG
1 TGTGTGGCCTTCAAATGGGCG
82295652 TGTGTGGCC-TCTAAATGGGC
1 TGTGTGGCCTTC-AAATGGGC
82295672 ACGTAGACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.12, C:0.22, G:0.37, T:0.29
Consensus pattern (21 bp):
TGTGTGGCCTTCAAATGGGCG
Found at i:82301787 original size:29 final size:29
Alignment explanation
Indices: 82301745--82301808 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
82301735 GGGTAGATTG
*
82301745 AAAGATTAAAGATTT-AAAGTTGGCTGGAT
1 AAAGATTAAAGATTTGAAA-TTGGCCGGAT
82301774 AAAGATTAAAGATTTGAAATTGGCCGGAT
1 AAAGATTAAAGATTTGAAATTGGCCGGAT
82301803 AAAGAT
1 AAAGAT
82301809 CATATTATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
29 30 0.91
30 3 0.09
ACGTcount: A:0.44, C:0.05, G:0.23, T:0.28
Consensus pattern (29 bp):
AAAGATTAAAGATTTGAAATTGGCCGGAT
Found at i:82301863 original size:18 final size:17
Alignment explanation
Indices: 82301842--82301879 Score: 67
Period size: 18 Copynumber: 2.2 Consensus size: 17
82301832 AATCCTGTAA
82301842 TTAGTTTAAATTTGATCT
1 TTAGTTTAAATTTGAT-T
82301860 TTAGTTTAAATTTGATT
1 TTAGTTTAAATTTGATT
82301877 TTA
1 TTA
82301880 AAATTTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.58
Consensus pattern (17 bp):
TTAGTTTAAATTTGATT
Found at i:82309837 original size:20 final size:20
Alignment explanation
Indices: 82309812--82309852 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
82309802 ATGATACGAA
82309812 AATTAATTGAGAATTCATAT
1 AATTAATTGAGAATTCATAT
82309832 AATTAATTGAGAATTCATAT
1 AATTAATTGAGAATTCATAT
82309852 A
1 A
82309853 GACATTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.39
Consensus pattern (20 bp):
AATTAATTGAGAATTCATAT
Found at i:82314721 original size:16 final size:16
Alignment explanation
Indices: 82314700--82314731 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82314690 ATAAGAATAA
*
82314700 GGGATGAATTTTAATT
1 GGGATGAAGTTTAATT
82314716 GGGATGAAGTTTAATT
1 GGGATGAAGTTTAATT
82314732 TCCGAGCCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.41
Consensus pattern (16 bp):
GGGATGAAGTTTAATT
Found at i:82317695 original size:19 final size:20
Alignment explanation
Indices: 82317604--82317696 Score: 68
Period size: 19 Copynumber: 4.8 Consensus size: 20
82317594 AAAATTTTTT
*
82317604 TACTTCGGTACCCCTGAATG
1 TACTTCGGTACCCCTGATTG
* * * *
82317624 CACGTAC-GTGCCTCTG-TTG
1 TAC-TTCGGTACCCCTGATTG
* *
82317643 TACTTTGGTACCCCTGAATG
1 TACTTCGGTACCCCTGATTG
*
82317663 TACTTAC-GTGCCCCT-ATTG
1 TACTT-CGGTACCCCTGATTG
82317682 TACTTCGGTACCCCT
1 TACTTCGGTACCCCT
82317697 TAAGCACTTA
Statistics
Matches: 53, Mismatches: 15, Indels: 11
0.67 0.19 0.14
Matches are distributed among these distances:
18 2 0.04
19 26 0.49
20 23 0.43
21 2 0.04
ACGTcount: A:0.16, C:0.31, G:0.19, T:0.33
Consensus pattern (20 bp):
TACTTCGGTACCCCTGATTG
Found at i:82317721 original size:38 final size:39
Alignment explanation
Indices: 82317604--82317730 Score: 168
Period size: 39 Copynumber: 3.3 Consensus size: 39
82317594 AAAATTTTTT
*
82317604 TACTTCGGTACCCCTGAATGCACGTACGTG-CCTCTGTTG
1 TACTTCGGTACCCCTGAATGCACTTACGTGCCCT-TGTTG
* * * *
82317643 TACTTTGGTACCCCTGAATGTACTTACGTGCCCCTATTG
1 TACTTCGGTACCCCTGAATGCACTTACGTGCCCTTGTTG
*
82317682 TACTTCGGTACCCCTTAA-GCACTTACGTGCCCTTGTTG
1 TACTTCGGTACCCCTGAATGCACTTACGTGCCCTTGTTG
*
82317720 TACTTCAGTAC
1 TACTTCGGTAC
82317731 TCCTAATAGT
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
38 27 0.36
39 47 0.62
40 2 0.03
ACGTcount: A:0.17, C:0.30, G:0.19, T:0.34
Consensus pattern (39 bp):
TACTTCGGTACCCCTGAATGCACTTACGTGCCCTTGTTG
Found at i:82318734 original size:12 final size:12
Alignment explanation
Indices: 82318717--82318749 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
82318707 TCAGGCAGTT
82318717 ACACGGCCTAGC
1 ACACGGCCTAGC
82318729 ACACGGCCTAGC
1 ACACGGCCTAGC
82318741 ACACGGCCT
1 ACACGGCCT
82318750 GACATACGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.42, G:0.24, T:0.09
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:82320986 original size:29 final size:30
Alignment explanation
Indices: 82320923--82321000 Score: 86
Period size: 31 Copynumber: 2.6 Consensus size: 30
82320913 GATGAATATC
*
82320923 TACATGAACTTTGATTTAATATGCAATGTCG
1 TACATGAACTTTGATTT-ATATGCAATGTCA
* * *
82320954 TACATGAACTTTGATTT-TGTGCAATTTTA
1 TACATGAACTTTGATTTATATGCAATGTCA
*
82320983 TACATGAAAATTTGATTT
1 TACATG-AACTTTGATTT
82321001 GATTCAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 14 0.34
30 10 0.24
31 17 0.41
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (30 bp):
TACATGAACTTTGATTTATATGCAATGTCA
Found at i:82321001 original size:29 final size:30
Alignment explanation
Indices: 82320923--82321011 Score: 76
Period size: 29 Copynumber: 3.0 Consensus size: 30
82320913 GATGAATATC
* * **
82320923 TACATGAACTTTGATTTAAT-ATGCAATGTCG
1 TACATGAAATTTGATTT--TGATGCAATTTTA
*
82320954 TACATGAACTTTGATTTTG-TGCAATTTTA
1 TACATGAAATTTGATTTTGATGCAATTTTA
*
82320983 TACATGAAAATTTGA-TTTGATTCAATTTT
1 TACATG-AAATTTGATTTTGATGCAATTTT
82321012 CAGAAATTAC
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 18 0.36
30 15 0.30
31 17 0.34
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.45
Consensus pattern (30 bp):
TACATGAAATTTGATTTTGATGCAATTTTA
Found at i:82321676 original size:22 final size:23
Alignment explanation
Indices: 82321648--82321690 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
82321638 TGGTTATGCT
82321648 AATGC-AATATTT-TAGAAAACAA
1 AATGCAAAT-TTTCTAGAAAACAA
82321670 AATGCAAATTTTCTAGAAAAC
1 AATGCAAATTTTCTAGAAAAC
82321691 TTCCTACCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.28
Consensus pattern (23 bp):
AATGCAAATTTTCTAGAAAACAA
Found at i:82321689 original size:23 final size:22
Alignment explanation
Indices: 82321648--82321690 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
82321638 TGGTTATGCT
82321648 AATGCAATATTTTAGAAAACAA
1 AATGCAATATTTTAGAAAACAA
82321670 AATGCAA-ATTTTCTAGAAAAC
1 AATGCAATA-TTT-TAGAAAAC
82321691 TTCCTACCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 1 0.05
22 10 0.53
23 8 0.42
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.28
Consensus pattern (22 bp):
AATGCAATATTTTAGAAAACAA
Found at i:82342299 original size:17 final size:17
Alignment explanation
Indices: 82342277--82342311 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
82342267 TTAACACCTA
82342277 TTATATGACATAAAACT
1 TTATATGACATAAAACT
82342294 TTATATGACATAAAACT
1 TTATATGACATAAAACT
82342311 T
1 T
82342312 ACCATTTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.06, T:0.37
Consensus pattern (17 bp):
TTATATGACATAAAACT
Found at i:82346082 original size:32 final size:32
Alignment explanation
Indices: 82346041--82346106 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
82346031 CACAAATTCT
82346041 TTTCCTGGTTCTAGCTGAACTAACACTGGAGC
1 TTTCCTGGTTCTAGCTGAACTAACACTGGAGC
82346073 TTTCCTGGTTCTAGCTGAACTAACACTGGAGC
1 TTTCCTGGTTCTAGCTGAACTAACACTGGAGC
82346105 TT
1 TT
82346107 CGATCAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.33
Consensus pattern (32 bp):
TTTCCTGGTTCTAGCTGAACTAACACTGGAGC
Found at i:82349909 original size:18 final size:19
Alignment explanation
Indices: 82349886--82349956 Score: 65
Period size: 18 Copynumber: 3.7 Consensus size: 19
82349876 TCTAATTCAT
82349886 AACCATTT-ATCATGTATA
1 AACCATTTCATCATGTATA
*
82349904 AACCATTTCATCAAGTTTTATA
1 AACCATTTCATC-A--TGTATA
* *
82349926 CACGATTT-ATCATGTATA
1 AACCATTTCATCATGTATA
*
82349944 TACCATTTCATCA
1 AACCATTTCATCA
82349957 AGTTTCATAC
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
18 19 0.45
19 7 0.17
20 2 0.05
21 3 0.07
22 11 0.26
ACGTcount: A:0.35, C:0.20, G:0.06, T:0.39
Consensus pattern (19 bp):
AACCATTTCATCATGTATA
Found at i:82349934 original size:40 final size:40
Alignment explanation
Indices: 82349881--82349968 Score: 142
Period size: 40 Copynumber: 2.2 Consensus size: 40
82349871 TCAATTCTAA
*
82349881 TTCATA-ACCATTTATCATGTATAAACCATTTCATCAAGT
1 TTCATACACGATTTATCATGTATAAACCATTTCATCAAGT
* *
82349920 TTTATACACGATTTATCATGTATATACCATTTCATCAAGT
1 TTCATACACGATTTATCATGTATAAACCATTTCATCAAGT
82349960 TTCATACAC
1 TTCATACAC
82349969 ATAGTATCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
39 5 0.11
40 39 0.89
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.40
Consensus pattern (40 bp):
TTCATACACGATTTATCATGTATAAACCATTTCATCAAGT
Found at i:82349977 original size:40 final size:40
Alignment explanation
Indices: 82349893--82349977 Score: 127
Period size: 40 Copynumber: 2.1 Consensus size: 40
82349883 CATAACCATT
* *
82349893 TATCATGTATAAACCATTTCATCAAGTTTTATACACGATT
1 TATCATGTATAAACCATTTCATCAAGTTTCATACACGATG
*
82349933 TATCATGTATATACCATTTCATCAAGTTTCATACAC-ATAG
1 TATCATGTATAAACCATTTCATCAAGTTTCATACACGAT-G
82349973 TATCA
1 TATCA
82349978 ACTACCACAT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.05
40 39 0.95
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (40 bp):
TATCATGTATAAACCATTTCATCAAGTTTCATACACGATG
Found at i:82350165 original size:44 final size:40
Alignment explanation
Indices: 82350117--82350210 Score: 116
Period size: 44 Copynumber: 2.2 Consensus size: 40
82350107 AAATGTTTAG
*
82350117 CCAAAGCTATAGCGATATCGCACACTTAGTGCCATCACATTGAA
1 CCAAAGCTATAGCGATATCACACACTTAGTG-C--CACA-TGAA
** *
82350161 CCAAAGCTATCTCGGTATCACACACTTAGTGCCACATGAA
1 CCAAAGCTATAGCGATATCACACACTTAGTGCCACATGAA
82350201 CCAAAGCTAT
1 CCAAAGCTAT
82350211 TTCAATTCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
40 14 0.30
41 4 0.09
43 1 0.02
44 27 0.59
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (40 bp):
CCAAAGCTATAGCGATATCACACACTTAGTGCCACATGAA
Found at i:82353534 original size:37 final size:37
Alignment explanation
Indices: 82353480--82353552 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
82353470 AAGATGTTAA
82353480 ATTTGAGTGGGTCAGAAAAGTGTCAGCAGAGTGATCG
1 ATTTGAGTGGGTCAGAAAAGTGTCAGCAGAGTGATCG
* *
82353517 ATTTGAGTGGGTTAGAAAAGTGTCAGTAGAGTGATC
1 ATTTGAGTGGGTCAGAAAAGTGTCAGCAGAGTGATC
82353553 ACGATTTTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.30, C:0.08, G:0.34, T:0.27
Consensus pattern (37 bp):
ATTTGAGTGGGTCAGAAAAGTGTCAGCAGAGTGATCG
Found at i:82356630 original size:16 final size:16
Alignment explanation
Indices: 82356591--82356635 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
82356581 ACCGATATTG
82356591 ATAATAATAAAATAAAA
1 ATAATAA-AAAATAAAA
* *
82356608 GT-CTAAAAAATAAAA
1 ATAATAAAAAATAAAA
82356623 ATAATAAAAAATA
1 ATAATAAAAAATA
82356636 GTGTTAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
15 10 0.43
16 12 0.52
17 1 0.04
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (16 bp):
ATAATAAAAAATAAAA
Found at i:82365775 original size:86 final size:86
Alignment explanation
Indices: 82365637--82365799 Score: 326
Period size: 86 Copynumber: 1.9 Consensus size: 86
82365627 TTGAGATTTT
82365637 TTCTAAGTTTCCAAAATTTTCATATTTATTGGTTTAGTCCCGAACCACTTCTAAAGCATGTTTAA
1 TTCTAAGTTTCCAAAATTTTCATATTTATTGGTTTAGTCCCGAACCACTTCTAAAGCATGTTTAA
82365702 GGCCTCGTAGGCTCAGATTAA
66 GGCCTCGTAGGCTCAGATTAA
82365723 TTCTAAGTTTCCAAAATTTTCATATTTATTGGTTTAGTCCCGAACCACTTCTAAAGCATGTTTAA
1 TTCTAAGTTTCCAAAATTTTCATATTTATTGGTTTAGTCCCGAACCACTTCTAAAGCATGTTTAA
82365788 GGCCTCGTAGGC
66 GGCCTCGTAGGC
82365800 CCTTATAACG
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 77 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (86 bp):
TTCTAAGTTTCCAAAATTTTCATATTTATTGGTTTAGTCCCGAACCACTTCTAAAGCATGTTTAA
GGCCTCGTAGGCTCAGATTAA
Found at i:82376219 original size:46 final size:47
Alignment explanation
Indices: 82376152--82376254 Score: 136
Period size: 47 Copynumber: 2.2 Consensus size: 47
82376142 TACGATTTAT
* **
82376152 CAGATATATGTGGTCAAGCCACTA-CATTGCAGTCAAGCTACCAAAA
1 CAGATATATGTGGTCAAGCCACTATAATTGCAACCAAGCTACCAAAA
* * *
82376198 CAGATATGTGTGGTTAAGCCACTATAATTGCAACCAAGCTGCCAAAA
1 CAGATATATGTGGTCAAGCCACTATAATTGCAACCAAGCTACCAAAA
*
82376245 TAGATATATG
1 CAGATATATG
82376255 GTTAAACCAC
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
46 22 0.46
47 26 0.54
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (47 bp):
CAGATATATGTGGTCAAGCCACTATAATTGCAACCAAGCTACCAAAA
Found at i:82377258 original size:15 final size:15
Alignment explanation
Indices: 82377238--82377271 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
82377228 CCTACAGGGG
*
82377238 ACACATGGCTGTGTC
1 ACACATGGCTGAGTC
82377253 ACACATGGCTGAGTC
1 ACACATGGCTGAGTC
82377268 ACAC
1 ACAC
82377272 GCTAGTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (15 bp):
ACACATGGCTGAGTC
Found at i:82377703 original size:44 final size:44
Alignment explanation
Indices: 82377655--82377745 Score: 164
Period size: 44 Copynumber: 2.1 Consensus size: 44
82377645 CAAATGTACC
* *
82377655 AACATAGTTAACTTACATAACGTATACTTACTAAATCACCTTCA
1 AACATAGTTAACTTACATAACATATACTTACCAAATCACCTTCA
82377699 AACATAGTTAACTTACATAACATATACTTACCAAATCACCTTCA
1 AACATAGTTAACTTACATAACATATACTTACCAAATCACCTTCA
82377743 AAC
1 AAC
82377746 CATTTTCAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.43, C:0.24, G:0.03, T:0.30
Consensus pattern (44 bp):
AACATAGTTAACTTACATAACATATACTTACCAAATCACCTTCA
Found at i:82379289 original size:29 final size:29
Alignment explanation
Indices: 82379256--82379313 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
82379246 TAGCCGAATT
82379256 ATTTGGAACCCTATTATAGCACATATTTG
1 ATTTGGAACCCTATTATAGCACATATTTG
82379285 ATTTGGAACCCTATTATAGCACATATTTG
1 ATTTGGAACCCTATTATAGCACATATTTG
82379314 TTGTTATTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (29 bp):
ATTTGGAACCCTATTATAGCACATATTTG
Found at i:82387090 original size:47 final size:47
Alignment explanation
Indices: 82387037--82387378 Score: 549
Period size: 47 Copynumber: 7.3 Consensus size: 47
82387027 ACAAGGTATG
* *
82387037 TATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAATTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
82387084 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
82387131 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
82387178 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
82387225 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * *
82387272 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
82387319 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
82387366 TAAATGTGATAAG
1 TATATGTGATAAG
82387379 TCCCGAAGGG
Statistics
Matches: 276, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 276 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:82389207 original size:38 final size:38
Alignment explanation
Indices: 82389143--82389217 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
82389133 AATCCGAGTT
*
82389143 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
82389181 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
82389218 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:82389333 original size:40 final size:40
Alignment explanation
Indices: 82389271--82389825 Score: 943
Period size: 40 Copynumber: 13.9 Consensus size: 40
82389261 AGGTCTCGAC
*
82389271 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* *
82389310 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* *
82389350 GATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* *
82389390 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
*
82389430 GATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
82389470 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* *
82389510 GATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
*
82389550 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
*
82389590 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
82389630 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
*
82389670 GATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
*
82389710 GATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* *
82389750 GATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
*
82389790 GATGTATCCGGGCTAAGCCCCGAAG-GCATTCGTGCT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
82389826 TGGACAAAAT
Statistics
Matches: 495, Mismatches: 20, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
39 15 0.03
40 480 0.97
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
Found at i:82390121 original size:25 final size:25
Alignment explanation
Indices: 82390071--82390121 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
82390061 TGTGTGACAA
* *
82390071 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
82390096 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
82390121 C
1 C
82390122 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Done.