Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 257 of 279
Found at i:83577491 original size:15 final size:15
Alignment explanation
Indices: 83577471--83577578 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
83577461 TTTATGGAAA
83577471 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* * **
83577486 ATCAAATA-ATAGAA
1 ATCAAAGATATGGGT
83577500 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
83577516 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
83577530 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
83577546 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
83577560 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
83577576 ATC
1 ATC
83577579 GAGATATTGG
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:83577508 original size:30 final size:30
Alignment explanation
Indices: 83577465--83577588 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
83577455 TCCATATTTA
* *
83577465 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
83577495 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
83577525 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
83577555 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
83577586 TGG
1 TGG
83577589 CATAATAAAA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 80 0.91
31 8 0.09
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:83595647 original size:16 final size:17
Alignment explanation
Indices: 83595622--83595655 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
83595612 TTCAAAACTA
83595622 TACATAAACTTT-ATTT
1 TACATAAACTTTAATTT
*
83595638 TACATTAACTTTAATTT
1 TACATAAACTTTAATTT
83595655 T
1 T
83595656 TTTTCTCTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (17 bp):
TACATAAACTTTAATTT
Found at i:83598750 original size:32 final size:32
Alignment explanation
Indices: 83598712--83598777 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
83598702 TTACTCACTC
83598712 TATTTTATATTGATTAGATTGTAATTGTAATT
1 TATTTTATATTGATTAGATTGTAATTGTAATT
83598744 TATTTTATATTGATTAGATTGTAATTGTAATT
1 TATTTTATATTGATTAGATTGTAATTGTAATT
83598776 TA
1 TA
83598778 GAGAATTTGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (32 bp):
TATTTTATATTGATTAGATTGTAATTGTAATT
Found at i:83600822 original size:9 final size:10
Alignment explanation
Indices: 83600800--83600836 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
83600790 AATGACTCCT
*
83600800 AAAATTTTTG
1 AAAATTTTTA
83600810 AAAATTTTTA
1 AAAATTTTTA
83600820 AAAA-TTTTA
1 AAAATTTTTA
83600829 AAAATTTT
1 AAAATTTT
83600837 CATTATACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (10 bp):
AAAATTTTTA
Found at i:83610314 original size:13 final size:13
Alignment explanation
Indices: 83610298--83610327 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
83610288 CATCGCTGTT
83610298 TCAGTTCTTTGAA
1 TCAGTTCTTTGAA
*
83610311 TCAGTTGTTTGAA
1 TCAGTTCTTTGAA
83610324 TCAG
1 TCAG
83610328 AAAACCCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.20, T:0.43
Consensus pattern (13 bp):
TCAGTTCTTTGAA
Found at i:83611410 original size:23 final size:23
Alignment explanation
Indices: 83611384--83611469 Score: 136
Period size: 23 Copynumber: 3.7 Consensus size: 23
83611374 AACCGGGCTT
*
83611384 AAAAAACCCGAACCGGGTTCACA
1 AAAAAACCCGAACCGGGTTCACG
* *
83611407 AAAAAACTCGACCCGGGTTCACG
1 AAAAAACCCGAACCGGGTTCACG
*
83611430 AAAAAACTCGAACCGGGTTCACG
1 AAAAAACCCGAACCGGGTTCACG
83611453 AAAAAACCCGAACCGGG
1 AAAAAACCCGAACCGGG
83611470 ATAACCATGG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 58 1.00
ACGTcount: A:0.41, C:0.29, G:0.21, T:0.09
Consensus pattern (23 bp):
AAAAAACCCGAACCGGGTTCACG
Found at i:83612088 original size:23 final size:23
Alignment explanation
Indices: 83612058--83612104 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
83612048 CAAAAAGAAA
83612058 CCAAATCTAAGCATAATATAAGC
1 CCAAATCTAAGCATAATATAAGC
*
83612081 CCAAATCTAAGCATTATATAAGC
1 CCAAATCTAAGCATAATATAAGC
83612104 C
1 C
83612105 TAAAATGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.23, G:0.09, T:0.23
Consensus pattern (23 bp):
CCAAATCTAAGCATAATATAAGC
Found at i:83620028 original size:23 final size:23
Alignment explanation
Indices: 83620002--83620054 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
83619992 AAATACTTTA
83620002 AATTTTATTAGCCAATCATAAAT
1 AATTTTATTAGCCAATCATAAAT
*
83620025 AATTTTATTAGCCATTCATAAAT
1 AATTTTATTAGCCAATCATAAAT
83620048 AATTTTA
1 AATTTTA
83620055 ATGCTAGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.43
Consensus pattern (23 bp):
AATTTTATTAGCCAATCATAAAT
Found at i:83622670 original size:752 final size:752
Alignment explanation
Indices: 83621226--83622730 Score: 3010
Period size: 752 Copynumber: 2.0 Consensus size: 752
83621216 GAAAATTGCA
83621226 CATTTTCAAATAAAACATTAGTCCACCCCACCCGAGAGAGAGAGTGAGATGAGTGGCATGGTCAA
1 CATTTTCAAATAAAACATTAGTCCACCCCACCCGAGAGAGAGAGTGAGATGAGTGGCATGGTCAA
83621291 AACAAAAATGTCATATATACACACACCCAAAGCCTCCACGTCGGAAGGTCAAAGGAAAAAGACAG
66 AACAAAAATGTCATATATACACACACCCAAAGCCTCCACGTCGGAAGGTCAAAGGAAAAAGACAG
83621356 TTTAATTTCCGTGTTATTGCCAGCCATTCTTCTTTGTACTGAACCTCATAAGGTCCTAGATCAGA
131 TTTAATTTCCGTGTTATTGCCAGCCATTCTTCTTTGTACTGAACCTCATAAGGTCCTAGATCAGA
83621421 TCAATATCAACAATCTAAAAGATCAGAGAAAGCCAGAATTCATTTGTTAGCTTCCAGCAAAGACC
196 TCAATATCAACAATCTAAAAGATCAGAGAAAGCCAGAATTCATTTGTTAGCTTCCAGCAAAGACC
83621486 AAAAGAAAGAACCTAAATGAAATGGTCAGAACATATGATAGATACCTGCAAGAACTTGAGCCCTG
261 AAAAGAAAGAACCTAAATGAAATGGTCAGAACATATGATAGATACCTGCAAGAACTTGAGCCCTG
83621551 GAAGGCATTTATCGAGTGCAAGAAATTTTGTCACTTGACCACCCTCTTCATGTTCAACAAGAGCG
326 GAAGGCATTTATCGAGTGCAAGAAATTTTGTCACTTGACCACCCTCTTCATGTTCAACAAGAGCG
83621616 GTGAATTTGCAGTGCAAGTGAGCTGAAAACCAATACGATGGTTTGAGTTTTTTGAGCAGCTGAGC
391 GTGAATTTGCAGTGCAAGTGAGCTGAAAACCAATACGATGGTTTGAGTTTTTTGAGCAGCTGAGC
83621681 AGCAGGTTTGCTTCCAAAAGTTCCTTGCTGGATCTAGGAAATATGTTTCAACCAACAAGCAACCA
456 AGCAGGTTTGCTTCCAAAAGTTCCTTGCTGGATCTAGGAAATATGTTTCAACCAACAAGCAACCA
83621746 GGAATGGTCAACAAGAAAACTGAATACGCTTGATATGAAGATTTTCATTCTGTCACATATATGCA
521 GGAATGGTCAACAAGAAAACTGAATACGCTTGATATGAAGATTTTCATTCTGTCACATATATGCA
83621811 TTTCCACCAATTGAATATAATTACCTCATCTTTGAAATGTTTTTTTGTAGCGAACAAGTTGCCAG
586 TTTCCACCAATTGAATATAATTACCTCATCTTTGAAATGTTTTTTTGTAGCGAACAAGTTGCCAG
83621876 TTCCCATAATCAATGATGCTGAGCGGCCAATCGTGTGAAAGGAAAATATCAACCAGTTCCTCTAG
651 TTCCCATAATCAATGATGCTGAGCGGCCAATCGTGTGAAAGGAAAATATCAACCAGTTCCTCTAG
83621941 GTGCATGAGCATGTCCCATTCTGCTACTCAATTCTTG
716 GTGCATGAGCATGTCCCATTCTGCTACTCAATTCTTG
83621978 CATTTTCAAATAAAACATTAGTCCACCCCACCCGAGAGAGAGAGTGAGATGAGTGGCATGGTCAA
1 CATTTTCAAATAAAACATTAGTCCACCCCACCCGAGAGAGAGAGTGAGATGAGTGGCATGGTCAA
83622043 AACAAAAATGTCATATATACACACACCCAAAGCCTCCACGTCGGAAGGTCAAAGGAAAAAGACAG
66 AACAAAAATGTCATATATACACACACCCAAAGCCTCCACGTCGGAAGGTCAAAGGAAAAAGACAG
83622108 TTTAATTTCCGTGTTATTGCCAGCCATTCTTCTTTGTACTGAACCTCATAAGGTCCTAGATCAGA
131 TTTAATTTCCGTGTTATTGCCAGCCATTCTTCTTTGTACTGAACCTCATAAGGTCCTAGATCAGA
83622173 TCAATATCAACAATCTAAAAGATCAGAGAAAGCCAGAATTCATTTGTTAGCTTCCAGCAAAGACC
196 TCAATATCAACAATCTAAAAGATCAGAGAAAGCCAGAATTCATTTGTTAGCTTCCAGCAAAGACC
83622238 AAAAGAAAGAACCTAAATGAAATGGTCAGAACATATGATAGATACCTGCAAGAACTTGAGCCCTG
261 AAAAGAAAGAACCTAAATGAAATGGTCAGAACATATGATAGATACCTGCAAGAACTTGAGCCCTG
83622303 GAAGGCATTTATCGAGTGCAAGAAATTTTGTCACTTGACCACCCTCTTCATGTTCAACAAGAGCG
326 GAAGGCATTTATCGAGTGCAAGAAATTTTGTCACTTGACCACCCTCTTCATGTTCAACAAGAGCG
83622368 GTGAATTTGCAGTGCAAGTGAGCTGAAAACCAATACGATGGTTTGAGTTTTTTGAGCAGCTGAGC
391 GTGAATTTGCAGTGCAAGTGAGCTGAAAACCAATACGATGGTTTGAGTTTTTTGAGCAGCTGAGC
83622433 AGCAGGTTTGCTTCCAAAAGTTCCTTGCTGGATCTAGGAAATATGTTTCAACCAACAAGCAACCA
456 AGCAGGTTTGCTTCCAAAAGTTCCTTGCTGGATCTAGGAAATATGTTTCAACCAACAAGCAACCA
83622498 GGAATGGTCAACAAGAAAACTGAATACGCTTGATATGAAGATTTTCATTCTGTCACATATATGCA
521 GGAATGGTCAACAAGAAAACTGAATACGCTTGATATGAAGATTTTCATTCTGTCACATATATGCA
83622563 TTTCCACCAATTGAATATAATTACCTCATCTTTGAAATGTTTTTTTGTAGCGAACAAGTTGCCAG
586 TTTCCACCAATTGAATATAATTACCTCATCTTTGAAATGTTTTTTTGTAGCGAACAAGTTGCCAG
83622628 TTCCCATAATCAATGATGCTGAGCGGCCAATCGTGTGAAAGGAAAATATCAACCAGTTCCTCTAG
651 TTCCCATAATCAATGATGCTGAGCGGCCAATCGTGTGAAAGGAAAATATCAACCAGTTCCTCTAG
83622693 GTGCATGAGCATGTCCCATTCTGCTACTCAATTCTTG
716 GTGCATGAGCATGTCCCATTCTGCTACTCAATTCTTG
83622730 C
1 C
83622731 CTGGATCCAA
Statistics
Matches: 753, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
752 753 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.27
Consensus pattern (752 bp):
CATTTTCAAATAAAACATTAGTCCACCCCACCCGAGAGAGAGAGTGAGATGAGTGGCATGGTCAA
AACAAAAATGTCATATATACACACACCCAAAGCCTCCACGTCGGAAGGTCAAAGGAAAAAGACAG
TTTAATTTCCGTGTTATTGCCAGCCATTCTTCTTTGTACTGAACCTCATAAGGTCCTAGATCAGA
TCAATATCAACAATCTAAAAGATCAGAGAAAGCCAGAATTCATTTGTTAGCTTCCAGCAAAGACC
AAAAGAAAGAACCTAAATGAAATGGTCAGAACATATGATAGATACCTGCAAGAACTTGAGCCCTG
GAAGGCATTTATCGAGTGCAAGAAATTTTGTCACTTGACCACCCTCTTCATGTTCAACAAGAGCG
GTGAATTTGCAGTGCAAGTGAGCTGAAAACCAATACGATGGTTTGAGTTTTTTGAGCAGCTGAGC
AGCAGGTTTGCTTCCAAAAGTTCCTTGCTGGATCTAGGAAATATGTTTCAACCAACAAGCAACCA
GGAATGGTCAACAAGAAAACTGAATACGCTTGATATGAAGATTTTCATTCTGTCACATATATGCA
TTTCCACCAATTGAATATAATTACCTCATCTTTGAAATGTTTTTTTGTAGCGAACAAGTTGCCAG
TTCCCATAATCAATGATGCTGAGCGGCCAATCGTGTGAAAGGAAAATATCAACCAGTTCCTCTAG
GTGCATGAGCATGTCCCATTCTGCTACTCAATTCTTG
Found at i:83639175 original size:22 final size:22
Alignment explanation
Indices: 83639135--83639177 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
83639125 AGTTTATGAT
*
83639135 ATAATTTTTATATTTTAATTTG
1 ATAATTTTTATATTCTAATTTG
83639157 ATAATTTTTA-ATATCTAATTT
1 ATAATTTTTATAT-TCTAATTT
83639178 TTCGAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
ATAATTTTTATATTCTAATTTG
Found at i:83639424 original size:119 final size:119
Alignment explanation
Indices: 83639213--83639440 Score: 411
Period size: 119 Copynumber: 1.9 Consensus size: 119
83639203 ATTCTGAGTG
* *
83639213 TGATGAAAACCTGGTATACTAGTGAATTTCTCTACCGAATGGTTACAGAGAACTAGAAGGTAATC
1 TGATGAAAACCTGGTAAACTAGTGAATTTCTCTACCGAATGATTACAGAGAACTAGAAGGTAATC
83639278 TTCATTCAGATTCAATTAAACTTTGCTTACTTTGAATAGTGCCCTCTGATACCA
66 TTCATTCAGATTCAATTAAACTTTGCTTACTTTGAATAGTGCCCTCTGATACCA
* *
83639332 TGATGAGAACCTGGTAAATTAGTGAATTTCTCTACCGAATGATTACAGAGAACTAGAAGGTAATC
1 TGATGAAAACCTGGTAAACTAGTGAATTTCTCTACCGAATGATTACAGAGAACTAGAAGGTAATC
*
83639397 TTCATTCAGATTCAATTAAATTTTGCTTACTTTGAATAGTGCCC
66 TTCATTCAGATTCAATTAAACTTTGCTTACTTTGAATAGTGCCC
83639441 AAATACATGT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 104 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (119 bp):
TGATGAAAACCTGGTAAACTAGTGAATTTCTCTACCGAATGATTACAGAGAACTAGAAGGTAATC
TTCATTCAGATTCAATTAAACTTTGCTTACTTTGAATAGTGCCCTCTGATACCA
Found at i:83643149 original size:130 final size:132
Alignment explanation
Indices: 83642911--83643256 Score: 317
Period size: 131 Copynumber: 2.6 Consensus size: 132
83642901 AAATGAAAAG
* * ** * *
83642911 CACAACCCAGCACGATAGGGCTCGATTCTCA--AATCTTCAAACATCGAACATCGCCTTCGTTTT
1 CACAACCCAACACGATAGGGCACGATTC-CACGAATCACCAAACATCGAATATCGCCTTTGTTTT
* ** * * ** * ** *
83642974 GAAA-GATTTTCAATAAACATGAGTGAAAACCTAAAGGAATATTCGATT-GTTTTGAGCAAACGA
65 -AAAGGATTTTTAATAGCCGTGGGTGAAATTCTAAAGGGACCTTCGATTACTTTT-AGCAAACGA
83643037 GAAAT
128 GAAAT
* * ** * * *
83643042 CACAACCCAGCACGATAGGGCATGATTCC-CGAATTGCCAAATATCGTATATTGCCTTTG-TTTA
1 CACAACCCAACACGATAGGGCACGATTCCACGAATCACCAAACATCGAATATCGCCTTTGTTTTA
* * *
83643105 AGGGATTTTTTATAGCCGTGGGTGAAATTCTAAAGGGACCTTCGATTACTTTTAGCAAACGAGGA
66 AAGGATTTTTAATAGCCGTGGGTGAAATTCTAAAGGGACCTTCGATTACTTTTAGCAAACGAGAA
83643170 AT
131 AT
** ** * * *
83643172 TGCAACTTAACACGTTAGGGCACGATTCCATGAATCACCAAGCATCGAATATCGCCTTTGTTTTA
1 CACAACCCAACACGATAGGGCACGATTCCACGAATCACCAAACATCGAATATCGCCTTTGTTTTA
83643237 AAGGATTTTTAATAGCCGTG
66 AAGGATTTTTAATAGCCGTG
83643257 AAACTAGCTT
Statistics
Matches: 169, Mismatches: 40, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
129 2 0.01
130 72 0.43
131 73 0.43
132 22 0.13
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (132 bp):
CACAACCCAACACGATAGGGCACGATTCCACGAATCACCAAACATCGAATATCGCCTTTGTTTTA
AAGGATTTTTAATAGCCGTGGGTGAAATTCTAAAGGGACCTTCGATTACTTTTAGCAAACGAGAA
AT
Found at i:83645451 original size:28 final size:28
Alignment explanation
Indices: 83645419--83645476 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
83645409 ATTTTATAGG
83645419 ATTAAAAAAATTAACCCAAAACTTGAAA
1 ATTAAAAAAATTAACCCAAAACTTGAAA
83645447 ATTAAAAAAATTAACCCAAAACTTGAAA
1 ATTAAAAAAATTAACCCAAAACTTGAAA
83645475 AT
1 AT
83645477 AGTTAAGGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.60, C:0.14, G:0.03, T:0.22
Consensus pattern (28 bp):
ATTAAAAAAATTAACCCAAAACTTGAAA
Found at i:83647951 original size:34 final size:34
Alignment explanation
Indices: 83647908--83647982 Score: 141
Period size: 34 Copynumber: 2.2 Consensus size: 34
83647898 TAATATTATC
*
83647908 GTATTGCAGATATGGGAATGATACGCGCCAATTG
1 GTATTGCAGATATGGGAATGATACGCCCCAATTG
83647942 GTATTGCAGATATGGGAATGATACGCCCCAATTG
1 GTATTGCAGATATGGGAATGATACGCCCCAATTG
83647976 GTATTGC
1 GTATTGC
83647983 GGATGCCCAC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (34 bp):
GTATTGCAGATATGGGAATGATACGCCCCAATTG
Found at i:83648351 original size:7 final size:6
Alignment explanation
Indices: 83648310--83648350 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
83648300 ATAATTTAAT
*
83648310 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
83648351 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:83648351 original size:20 final size:20
Alignment explanation
Indices: 83648313--83648352 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
83648303 ATTTAATAAA
**
83648313 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
83648333 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
83648353 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:83648384 original size:9 final size:9
Alignment explanation
Indices: 83648370--83648428 Score: 84
Period size: 9 Copynumber: 6.6 Consensus size: 9
83648360 TTTATACAAA
83648370 TAATTCGGT
1 TAATTCGGT
83648379 TAATTCGGT
1 TAATTCGGT
* *
83648388 TAATTTGGG
1 TAATTCGGT
83648397 TAATTCTGG-
1 TAATTC-GGT
83648406 TAATTCGGT
1 TAATTCGGT
83648415 TAATTCGGT
1 TAATTCGGT
83648424 TAATT
1 TAATT
83648429 TTATACTTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
8 2 0.04
9 41 0.91
10 2 0.04
ACGTcount: A:0.24, C:0.08, G:0.22, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:83654067 original size:24 final size:24
Alignment explanation
Indices: 83654007--83654052 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
83653997 CAACTCGAAA
*
83654007 GAGCATCCTGTTATTAGCTCTCAT
1 GAGCATCCTGTTATTAGCCCTCAT
83654031 GAGCATCCTGTTATTAGCCCTC
1 GAGCATCCTGTTATTAGCCCTC
83654053 TCGAGCTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (24 bp):
GAGCATCCTGTTATTAGCCCTCAT
Found at i:83654312 original size:49 final size:50
Alignment explanation
Indices: 83654254--83654353 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 50
83654244 ATTGGCTTGC
* *
83654254 ATAAACTTCCCGAT-TATGACTCGCATGAGCTTCTTATTATATAGC-CAAG
1 ATAAACTTCCCGATATATGACTCACATGAGCTTCCTATTATAT-GCTCAAG
* * *
83654303 ATAAGCTTCCCGTTATATGGCTCACATGAGCTTCCTATTATATGCTCAAG
1 ATAAACTTCCCGATATATGACTCACATGAGCTTCCTATTATATGCTCAAG
83654353 A
1 A
83654354 GAGTGCTTCC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
49 14 0.32
50 30 0.68
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (50 bp):
ATAAACTTCCCGATATATGACTCACATGAGCTTCCTATTATATGCTCAAG
Found at i:83658268 original size:6 final size:6
Alignment explanation
Indices: 83658257--83658288 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
83658247 TTATATTAAT
83658257 AATTTA AATTTA AATTTA AATTTA AATTTA AA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AA
83658289 ATATAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
AATTTA
Found at i:83662163 original size:23 final size:22
Alignment explanation
Indices: 83662119--83662169 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
83662109 TCATGTTTAC
83662119 TTTTTAAATTTATTAAATAATA
1 TTTTTAAATTTATTAAATAATA
*
83662141 TTTTTATATATTTTTTAAA-AATA
1 TTTTTA-A-ATTTATTAAATAATA
*
83662164 TATTTA
1 TTTTTA
83662170 CTATTTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 6 0.24
23 10 0.40
24 9 0.36
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTTTAAATTTATTAAATAATA
Found at i:83669848 original size:31 final size:32
Alignment explanation
Indices: 83669813--83669874 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
83669803 TTATAAAACG
* *
83669813 ATCATTGACCTATTCAAAAG-TTTTTATTTAT
1 ATCATTAAACTATTCAAAAGTTTTTTATTTAT
*
83669844 ATCATTAAACTATTCGAAAGTTTTTTATTTA
1 ATCATTAAACTATTCAAAAGTTTTTTATTTA
83669875 AGCTACTAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 17 0.63
32 10 0.37
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.48
Consensus pattern (32 bp):
ATCATTAAACTATTCAAAAGTTTTTTATTTAT
Found at i:83670107 original size:17 final size:18
Alignment explanation
Indices: 83670071--83670108 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
83670061 TCTTAACGTT
83670071 AAAAGTTATTTTATGAAA
1 AAAAGTTATTTTATGAAA
83670089 AAAAGTTATTTTATGAAA
1 AAAAGTTATTTTATGAAA
83670107 AA
1 AA
83670109 TAAATGGAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.37
Consensus pattern (18 bp):
AAAAGTTATTTTATGAAA
Found at i:83676473 original size:21 final size:19
Alignment explanation
Indices: 83676458--83676494 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
83676448 TAAAAAATTA
*
83676458 TAAAAATTTTGAAAAAAAT
1 TAAAAATTATGAAAAAAAT
*
83676477 TAGAAATTATGAAAAAAA
1 TAAAAATTATGAAAAAAA
83676495 AGTCATTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (19 bp):
TAAAAATTATGAAAAAAAT
Found at i:83677898 original size:33 final size:33
Alignment explanation
Indices: 83677861--83677927 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
83677851 ATTCTTTACC
83677861 ACTAAATCTCATCCTAATAAACTGTGCATCATT
1 ACTAAATCTCATCCTAATAAACTGTGCATCATT
83677894 ACTAAATCTCATCCTAATAAACTGTGCATCATT
1 ACTAAATCTCATCCTAATAAACTGTGCATCATT
83677927 A
1 A
83677928 TCTTTACAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (33 bp):
ACTAAATCTCATCCTAATAAACTGTGCATCATT
Found at i:83682986 original size:96 final size:96
Alignment explanation
Indices: 83682822--83683013 Score: 287
Period size: 96 Copynumber: 2.0 Consensus size: 96
83682812 GATGGACTTC
* * * **
83682822 AGTTGACTATATAAGATCAAGCAAAAGCACTTAATGGCGCAAGTTCAACTTCGTTTGAACTTAAG
1 AGTTGACCATATAAGATCAAGCAAAAACACTTAATGGAGCAAGTTCAACTTCAATTGAACTTAAG
* *
83682887 AACATTATGTCAAGTTCCATCTAAATAAAAA
66 AACATCACGTCAAGTTCCATCTAAATAAAAA
* *
83682918 AGTTGACCATTTAAGATTAA-CAAAAAACACTTAATGGAGCAAGTTCAACTTCAATTGAACTTAA
1 AGTTGACCATATAAGATCAAGC-AAAAACACTTAATGGAGCAAGTTCAACTTCAATTGAACTTAA
83682982 GAACATCACGTCAAGTTCCATCTAAATAAAAA
65 GAACATCACGTCAAGTTCCATCTAAATAAAAA
83683014 CAAATGTGTA
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
95 1 0.01
96 85 0.99
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.27
Consensus pattern (96 bp):
AGTTGACCATATAAGATCAAGCAAAAACACTTAATGGAGCAAGTTCAACTTCAATTGAACTTAAG
AACATCACGTCAAGTTCCATCTAAATAAAAA
Found at i:83684078 original size:2 final size:2
Alignment explanation
Indices: 83684071--83684095 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
83684061 GTAAGAGCTT
83684071 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
83684096 GAGGAGGCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:83689445 original size:18 final size:17
Alignment explanation
Indices: 83689422--83689467 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
83689412 ATTTAAATTG
83689422 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCG-TTT
*
83689440 CGGTCGC-GTCGAGTTT
1 CGGTCGCGGTCGCGTTT
83689456 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
83689468 GACATAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 5 0.20
15 5 0.20
16 3 0.12
17 5 0.20
18 7 0.28
ACGTcount: A:0.02, C:0.28, G:0.41, T:0.28
Consensus pattern (17 bp):
CGGTCGCGGTCGCGTTT
Found at i:83691283 original size:19 final size:20
Alignment explanation
Indices: 83691261--83691299 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
83691251 ATTTGATTAA
83691261 ATAAA-TTATTAAAAATTTT
1 ATAAATTTATTAAAAATTTT
83691280 ATAAATTTATTAAAAATTTT
1 ATAAATTTATTAAAAATTTT
83691300 GATTTTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
ATAAATTTATTAAAAATTTT
Found at i:83706938 original size:48 final size:50
Alignment explanation
Indices: 83706882--83706979 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
83706872 CTTGACAATT
83706882 GCCAAGTTCAAAACCTTAGA-AAA-AAAAAATTCAAACCCAATGTGAGAA
1 GCCAAGTTCAAAACCTTAGACAAAGAAAAAATTCAAACCCAATGTGAGAA
83706930 GCCAAGTTCAAAACCTTAGACAAAGAAAAAATTCAAACCCAATGTGAGAA
1 GCCAAGTTCAAAACCTTAGACAAAGAAAAAATTCAAACCCAATGTGAGAA
83706980 TAGTTACGAA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
48 20 0.42
49 3 0.06
50 25 0.52
ACGTcount: A:0.51, C:0.19, G:0.13, T:0.16
Consensus pattern (50 bp):
GCCAAGTTCAAAACCTTAGACAAAGAAAAAATTCAAACCCAATGTGAGAA
Found at i:83717841 original size:16 final size:16
Alignment explanation
Indices: 83717822--83717856 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
83717812 GTTCACCGCC
83717822 GCATATTTTGAAAATA
1 GCATATTTTGAAAATA
83717838 GCATATTTTGAAAATA
1 GCATATTTTGAAAATA
83717854 GCA
1 GCA
83717857 AAACTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (16 bp):
GCATATTTTGAAAATA
Found at i:83724884 original size:24 final size:24
Alignment explanation
Indices: 83724848--83724895 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
83724838 TTTTTGTGAT
*
83724848 AATGATTTCTCTTTCTCTTCCTTG
1 AATGATTTATCTTTCTCTTCCTTG
83724872 AATGATTTATCTTTCTCTTCCTTG
1 AATGATTTATCTTTCTCTTCCTTG
83724896 GAAGACACGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.15, C:0.23, G:0.08, T:0.54
Consensus pattern (24 bp):
AATGATTTATCTTTCTCTTCCTTG
Found at i:83726157 original size:4 final size:4
Alignment explanation
Indices: 83726148--83726174 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
83726138 CTTTTACTTC
83726148 ATTA ATTA ATTA ATTA ATTA ATTA ATT
1 ATTA ATTA ATTA ATTA ATTA ATTA ATT
83726175 TTATTTTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
ATTA
Found at i:83728034 original size:31 final size:31
Alignment explanation
Indices: 83727996--83728059 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
83727986 CAGCCTAGTA
*
83727996 ACTTAAATAAAAACTTTTGAATAGTTCAGTG
1 ACTTAAATAAAAACTTTTGAATAATTCAGTG
* *
83728027 ACTTAAATGAAAATTTTTGAATAATTCAGTG
1 ACTTAAATAAAAACTTTTGAATAATTCAGTG
83728058 AC
1 AC
83728060 CATTTTGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (31 bp):
ACTTAAATAAAAACTTTTGAATAATTCAGTG
Found at i:83729491 original size:192 final size:196
Alignment explanation
Indices: 83729150--83729537 Score: 597
Period size: 192 Copynumber: 2.0 Consensus size: 196
83729140 AACCTAATGA
* * * *
83729150 ATGTTACTGCAGCTAGTTGCTATAAATATCGGCTATGGAAACTAGTTGAAACTGATAAATAGTGA
1 ATGTTACTGCAGCCAGTTACTATAAATATCGGCTATGGAAACGAGTTGAAACTGAAAAATAGTGA
*
83729215 TTCTTAACACAGTGTTGTGGTTGCTATTTGAATCTCTTTATAATTTCTTAGTGCTATTCTCTCTT
66 CTCTTAACACAGTGTTGTGGTTGCTATTTGAATCTC-TTATAA-TTCTTAGTGCTATTCTCTCTT
*
83729280 GACTGTATGCTTGGCTGCTAAATCCTGCTTACCCTGTTCTTGGTACCTTCTATCCAAATGGAATA
129 GACTGTATGCTTGGCTGCTAAATCCTGCTTACCCTGTTCTTGGTACCCTCTATCCAAATGGAATA
83729345 TTC
194 TTC
* *
83729348 ATGTTACTGCAGCCAGTTACTTTAAATATCGGCTATGGAAA-GAGTTGAAATTGAAAAATTA-TG
1 ATGTTACTGCAGCCAGTTACTATAAATATCGGCTATGGAAACGAGTTGAAACTGAAAAA-TAGTG
* * *
83729411 ACTCTTAACACAGTGTTGTGGTTGCTATTTGAGTCTC-TCT-A-TCTTAGTGTTATTCTCTCTTG
65 ACTCTTAACACAGTGTTGTGGTTGCTATTTGAATCTCTTATAATTCTTAGTGCTATTCTCTCTTG
* *
83729473 ACTGTATGTTTGGCTGCTAAATCCTGCTTACCCTGTTCTTGTTACCCTCTATCCAAATGGAATAT
130 ACTGTATGCTTGGCTGCTAAATCCTGCTTACCCTGTTCTTGGTACCCTCTATCCAAATGGAATAT
83729538 GCAATTTTTG
Statistics
Matches: 176, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
192 82 0.47
194 1 0.01
195 2 0.01
197 51 0.29
198 40 0.23
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (196 bp):
ATGTTACTGCAGCCAGTTACTATAAATATCGGCTATGGAAACGAGTTGAAACTGAAAAATAGTGA
CTCTTAACACAGTGTTGTGGTTGCTATTTGAATCTCTTATAATTCTTAGTGCTATTCTCTCTTGA
CTGTATGCTTGGCTGCTAAATCCTGCTTACCCTGTTCTTGGTACCCTCTATCCAAATGGAATATT
C
Found at i:83736814 original size:33 final size:33
Alignment explanation
Indices: 83736777--83736845 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
83736767 TAAGGATTAA
83736777 AGCCACAACTTTCGCAAAAATAGAAAGACTAAT
1 AGCCACAACTTTCGCAAAAATAGAAAGACTAAT
*
83736810 AGCCACAACTTTCGCAAAAATAGAAGGACTAAT
1 AGCCACAACTTTCGCAAAAATAGAAAGACTAAT
83736843 AGC
1 AGC
83736846 AGAATTTAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.46, C:0.22, G:0.14, T:0.17
Consensus pattern (33 bp):
AGCCACAACTTTCGCAAAAATAGAAAGACTAAT
Found at i:83739358 original size:20 final size:20
Alignment explanation
Indices: 83739333--83739380 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
83739323 ATTTCAATTT
**
83739333 TAAAATAACGATATGATTG-A
1 TAAAATAAC-ATAAAATTGCA
83739353 TAAAATTAACATAAAATTGCA
1 TAAAA-TAACATAAAATTGCA
83739374 TAAAATA
1 TAAAATA
83739381 TCAAAAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.29
Consensus pattern (20 bp):
TAAAATAACATAAAATTGCA
Found at i:83743374 original size:2 final size:2
Alignment explanation
Indices: 83743362--83743397 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
83743352 TTCATTGGTA
*
83743362 CT CT CT TT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
83743398 TACCTGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
CT
Found at i:83758350 original size:67 final size:67
Alignment explanation
Indices: 83758242--83758552 Score: 595
Period size: 67 Copynumber: 4.6 Consensus size: 67
83758232 ATGTACACTA
* *
83758242 GAAACAGCCAAGGGAAACTACACTTTTCCACACATTCAACTACCACCTATTTTAAGTTGCCTTAA
1 GAAACAGCTAAGGAAAACTACACTTTTCCACACATTCAACTACCACCTATTTTAAGTTGCCTTAA
83758307 GG
66 GG
83758309 GAAACAGCTAAGGAAAACTACACTTTTCCACACATTCAACTACCACCTATTTTAAGTTGCCTTAA
1 GAAACAGCTAAGGAAAACTACACTTTTCCACACATTCAACTACCACCTATTTTAAGTTGCCTTAA
83758374 GG
66 GG
83758376 GAAACAGCTAAGGAAAACTACACTTTTCCACACATTCAACTACCACCTATTTTAAGTTGCCTTAA
1 GAAACAGCTAAGGAAAACTACACTTTTCCACACATTCAACTACCACCTATTTTAAGTTGCCTTAA
83758441 GG
66 GG
83758443 GAAACAGCTAAGGAAAACTACACTTTTCCACACATTCAACTACCACCTATTTTAAGTTGCCTTAA
1 GAAACAGCTAAGGAAAACTACACTTTTCCACACATTCAACTACCACCTATTTTAAGTTGCCTTAA
83758508 GG
66 GG
*
83758510 GAAACAGCTAAGGAAAACTACGCTTTTCCACACATTCAACTAC
1 GAAACAGCTAAGGAAAACTACACTTTTCCACACATTCAACTAC
83758553 ATATTCCCGA
Statistics
Matches: 241, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 241 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (67 bp):
GAAACAGCTAAGGAAAACTACACTTTTCCACACATTCAACTACCACCTATTTTAAGTTGCCTTAA
GG
Found at i:83759851 original size:31 final size:31
Alignment explanation
Indices: 83759790--83759855 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 31
83759780 GTAATTATAC
*
83759790 ACATGAAACTTGAATTATGGTTCATATGTAT
1 ACATGAAACTTGAATTATGATTCATATGTAT
*
83759821 ACATGAAACTTTG-ATTTTGATTCA-ATTGTAT
1 ACATGAAAC-TTGAATTATGATTCATA-TGTAT
83759852 ACAT
1 ACAT
83759856 TTAAAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 1 0.03
31 27 0.87
32 3 0.10
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.41
Consensus pattern (31 bp):
ACATGAAACTTGAATTATGATTCATATGTAT
Found at i:83765554 original size:14 final size:14
Alignment explanation
Indices: 83765535--83765562 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83765525 ACTGCCGTAA
83765535 GACTAGATTAGCAC
1 GACTAGATTAGCAC
83765549 GACTAGATTAGCAC
1 GACTAGATTAGCAC
83765563 AGAGCCATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (14 bp):
GACTAGATTAGCAC
Found at i:83774571 original size:12 final size:12
Alignment explanation
Indices: 83774554--83774595 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
83774544 CTTGACATTA
83774554 AATAAATAATGG
1 AATAAATAATGG
**
83774566 AATAAA-ACATTA
1 AATAAATA-ATGG
83774578 AATAAATAATGG
1 AATAAATAATGG
83774590 AATAAA
1 AATAAA
83774596 ACATACCTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 1 0.04
12 22 0.92
13 1 0.04
ACGTcount: A:0.64, C:0.02, G:0.10, T:0.24
Consensus pattern (12 bp):
AATAAATAATGG
Found at i:83774575 original size:24 final size:24
Alignment explanation
Indices: 83774548--83774599 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
83774538 ACGGTTCTTG
83774548 ACATTAAATAAATAATGGAATAAA
1 ACATTAAATAAATAATGGAATAAA
83774572 ACATTAAATAAATAATGGAATAAA
1 ACATTAAATAAATAATGGAATAAA
83774596 ACAT
1 ACAT
83774600 ACCTTACAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.62, C:0.06, G:0.08, T:0.25
Consensus pattern (24 bp):
ACATTAAATAAATAATGGAATAAA
Found at i:83777461 original size:32 final size:31
Alignment explanation
Indices: 83777397--83777482 Score: 93
Period size: 32 Copynumber: 2.7 Consensus size: 31
83777387 CCTTAACAAC
*
83777397 TCAGTAACGTAAAT-AAACATTCCAAATAAT
1 TCAGTAACTTAAATAAAACATTCCAAATAAT
* * *
83777427 TCAGTAACTTAAATAGAAACTTTTCAAATTAT
1 TCAGTAACTTAAATA-AAACATTCCAAATAAT
* *
83777459 TCAGTGATTTAAATAAAAACATTC
1 TCAGTAACTTAAAT-AAAACATTC
83777483 AAACAATCTA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
30 13 0.29
32 31 0.69
33 1 0.02
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.33
Consensus pattern (31 bp):
TCAGTAACTTAAATAAAACATTCCAAATAAT
Found at i:83778239 original size:23 final size:22
Alignment explanation
Indices: 83778190--83778246 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
83778180 AACCTAAATT
*
83778190 TTAAAATCTAAAAAATAAAAAA
1 TTAAATTCTAAAAAATAAAAAA
* * *
83778212 ATAAATTCTTAAAAATAAAAGGA
1 TTAAATTCTAAAAAATAAAA-AA
83778235 TTAAATTCTAAA
1 TTAAATTCTAAA
83778247 TTTGTGAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 17 0.61
23 11 0.39
ACGTcount: A:0.63, C:0.05, G:0.04, T:0.28
Consensus pattern (22 bp):
TTAAATTCTAAAAAATAAAAAA
Found at i:83782335 original size:14 final size:14
Alignment explanation
Indices: 83782313--83782366 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
83782303 TTTTTGTAAA
*
83782313 TTTAAAATTTAGTT
1 TTTAAAATTTAATT
*
83782327 TTTATAATTTAATT
1 TTTAAAATTTAATT
* *
83782341 TTTAAAGATATATTTT
1 TTTAAA-ATTTA-ATT
83782357 TTTAAAATTT
1 TTTAAAATTT
83782367 TAAAATCTAG
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
14 17 0.53
15 7 0.22
16 8 0.25
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (14 bp):
TTTAAAATTTAATT
Found at i:83785520 original size:22 final size:22
Alignment explanation
Indices: 83785495--83785546 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
83785485 GCATATTGGG
*
83785495 CCACGTGTAGATAGCGTATAGT
1 CCACGTGTAGATAACGTATAGT
83785517 CCACGTGTAGATAACGTATAGT
1 CCACGTGTAGATAACGTATAGT
*
83785539 CCATGTGT
1 CCACGTGT
83785547 CTGTAGTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (22 bp):
CCACGTGTAGATAACGTATAGT
Found at i:83789015 original size:18 final size:18
Alignment explanation
Indices: 83788994--83789029 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
83788984 TTTACACTGG
*
83788994 AAAAATA-ATATAAATGA
1 AAAAATACATAAAAATGA
83789011 AAAAATACATAAAAATGA
1 AAAAATACATAAAAATGA
83789029 A
1 A
83789030 GCATGTTGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.72, C:0.03, G:0.06, T:0.19
Consensus pattern (18 bp):
AAAAATACATAAAAATGA
Found at i:83793581 original size:12 final size:12
Alignment explanation
Indices: 83793564--83793588 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83793554 ATAGTTCCTC
83793564 TCAACCTATAAA
1 TCAACCTATAAA
83793576 TCAACCTATAAA
1 TCAACCTATAAA
83793588 T
1 T
83793589 AAGAGGATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (12 bp):
TCAACCTATAAA
Found at i:83793619 original size:41 final size:41
Alignment explanation
Indices: 83793562--83793644 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
83793552 TTATAGTTCC
83793562 TCTCAACCTATAAATCAACCTATAAATAAGAGGATAATGTG
1 TCTCAACCTATAAATCAACCTATAAATAAGAGGATAATGTG
83793603 TCTCAACCTATAAATCAACCTATAAATAAGAGGATAATGTG
1 TCTCAACCTATAAATCAACCTATAAATAAGAGGATAATGTG
83793644 T
1 T
83793645 TTCAGAGTAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (41 bp):
TCTCAACCTATAAATCAACCTATAAATAAGAGGATAATGTG
Found at i:83793622 original size:12 final size:12
Alignment explanation
Indices: 83793605--83793629 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83793595 ATAATGTGTC
83793605 TCAACCTATAAA
1 TCAACCTATAAA
83793617 TCAACCTATAAA
1 TCAACCTATAAA
83793629 T
1 T
83793630 AAGAGGATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (12 bp):
TCAACCTATAAA
Found at i:83793818 original size:29 final size:31
Alignment explanation
Indices: 83793776--83793837 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 31
83793766 TAATAAAAAT
*
83793776 AAAATTGTACTTTAATACTTT-AAAATTATA
1 AAAATTGTAATTTAATACTTTAAAAATTATA
**
83793806 AAAATT-TAATTTAATTTTTTAAAAATTATA
1 AAAATTGTAATTTAATACTTTAAAAATTATA
83793836 AA
1 AA
83793838 GATATAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (31 bp):
AAAATTGTAATTTAATACTTTAAAAATTATA
Found at i:83798004 original size:18 final size:18
Alignment explanation
Indices: 83797981--83798044 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
83797971 ACATCGCGAT
83797981 CTGAAGCCCGAAGTCTAA
1 CTGAAGCCCGAAGTCTAA
**
83797999 CTGAAGCACATAAGTGCTAAA
1 CTGAAGC-CCGAAGT-CT-AA
* * *
83798020 CGGAAGCCCGGAGGCTAA
1 CTGAAGCCCGAAGTCTAA
83798038 CTGAAGC
1 CTGAAGC
83798045 ACATAAGTGC
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
18 15 0.43
19 7 0.20
20 5 0.14
21 8 0.23
ACGTcount: A:0.34, C:0.25, G:0.27, T:0.14
Consensus pattern (18 bp):
CTGAAGCCCGAAGTCTAA
Found at i:83798025 original size:21 final size:21
Alignment explanation
Indices: 83798001--83798065 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
83797991 AAGTCTAACT
83798001 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
*** *
83798022 GAAGC-CCGGAG-GCT-AACT
1 GAAGCACATAAGTGCTAAACG
83798040 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
83798061 GAAGC
1 GAAGC
83798066 CCGNNNNNNN
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 8 0.24
19 6 0.18
20 6 0.18
21 13 0.39
ACGTcount: A:0.38, C:0.22, G:0.28, T:0.12
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACG
Found at i:83798038 original size:39 final size:39
Alignment explanation
Indices: 83797983--83798068 Score: 154
Period size: 39 Copynumber: 2.2 Consensus size: 39
83797973 ATCGCGATCT
*
83797983 GAAGCCCGAAGTCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
83798022 GAAGCCCGGAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
83798061 GAAGCCCG
1 GAAGCCCG
83798069 NNNNNNNNNN
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.36, C:0.24, G:0.27, T:0.13
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:83802780 original size:58 final size:60
Alignment explanation
Indices: 83802662--83802783 Score: 151
Period size: 58 Copynumber: 2.1 Consensus size: 60
83802652 ATTCTAAGTT
* * *
83802662 TTCAAGGACTAACTTGGACACAAAAAAAGTTCAAGTCCCAATACGAGAATAATTGTTAAG
1 TTCAAGGACTAACTTGGACACAAAAAAAGTTCAAGACCCAATACGAGAAAAATTATTAAG
* * * *
83802722 TTCAAGGGCTAACTTGGATA-AAAAAAA-TTTAA-ACCCAAATATGAGAAAAATTATTAAG
1 TTCAAGGACTAACTTGGACACAAAAAAAGTTCAAGACCC-AATACGAGAAAAATTATTAAG
83802780 TTCA
1 TTCA
83802784 GGTCTTAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
57 3 0.06
58 26 0.48
59 7 0.13
60 18 0.33
ACGTcount: A:0.46, C:0.14, G:0.15, T:0.25
Consensus pattern (60 bp):
TTCAAGGACTAACTTGGACACAAAAAAAGTTCAAGACCCAATACGAGAAAAATTATTAAG
Found at i:83803183 original size:3 final size:3
Alignment explanation
Indices: 83803175--83803200 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
83803165 TCGCTCAATT
83803175 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
83803201 TTCATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:83804250 original size:104 final size:104
Alignment explanation
Indices: 83804005--83804520 Score: 804
Period size: 104 Copynumber: 5.0 Consensus size: 104
83803995 AACATATTCC
*
83804005 AGATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTTGAATGAGTTTGATTTTGATTCATC
1 AGATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGATTTTGATTCATC
* *
83804070 ATTTTCGC-TAAACTTGAGTATTTAAGTTAGAGGTTTAA
66 ATTTTCGCATAAACTTGAGTATTTAACTTAGAGGTTTCA
83804108 AGATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGATTTTGATTCATC
1 AGATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGATTTTGATTCATC
* *
83804173 ATTTTCGCTTAAACTTGAATATTTAACTTAGAGGTTTCA
66 ATTTTCGCATAAACTTGAGTATTTAACTTAGAGGTTTCA
* *
83804212 AGATTTTCATGTAAACAAGGAATCAAAGCTCTTACATTGTAGAATGAGTTTGATTTTGATTCATC
1 AGATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGATTTTGATTCATC
*
83804277 ATTTTCGCTTAAACTTGAGTATTTAACTTAGAGGTTTCA
66 ATTTTCGCATAAACTTGAGTATTTAACTTAGAGGTTTCA
* * * *
83804316 AGATTTTTATGTAAATAATGAATCAAAGCTCGTACATTGTAGCATGAGTTTGATTTTGA-TCTGT
1 AGATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGATTTTGATTC-AT
* * *
83804380 AATTTTCGCATAAACTCGAGTATTTAACTTAGAAGTTTCA
65 CATTTTCGCATAAACTTGAGTATTTAACTTAGAGGTTTCA
* * *
83804420 AGATTTTTATGTAAATAATGAATCAAAGCTCTTACATTGTAGCATGAGTTTGATTTTGA-TCTGT
1 AGATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGATTTTGATTC-AT
* * *
83804484 AATTTTCGCATAAACTCGAGTATTTAACTTAGTGGTT
65 CATTTTCGCATAAACTTGAGTATTTAACTTAGAGGTT
83804521 GGTGACTGAT
Statistics
Matches: 391, Mismatches: 20, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
103 74 0.19
104 317 0.81
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (104 bp):
AGATTTTCATGTAAATAATGAATCAAAGCTCTTACATTGTAGAATGAGTTTGATTTTGATTCATC
ATTTTCGCATAAACTTGAGTATTTAACTTAGAGGTTTCA
Found at i:83804476 original size:50 final size:49
Alignment explanation
Indices: 83804317--83804476 Score: 121
Period size: 50 Copynumber: 3.1 Consensus size: 49
83804307 GAGGTTTCAA
83804317 GATTTTTATGTAAATAATGAATCAAAGCTCGTACATTGTAGCATGAGTTT
1 GATTTTTATGTAAATAATGAATCAAAGCTC-TACATTGTAGCATGAGTTT
* ** * * * * *
83804367 GATTTTGATCTGT-AATTTTCGCAT-AAA-CTCGAGTATT-TAACTTAGAAGTTT
1 GATTTT--TATGTAAATAAT-GAATCAAAGCTCTA-CATTGTAGCAT-G-AGTTT
83804418 CAAGATTTTTATGTAAATAATGAATCAAAGCTCTTACATTGTAGCATGAGTTT
1 ---GATTTTTATGTAAATAATGAATCAAAGCTC-TACATTGTAGCATGAGTTT
83804471 GATTTT
1 GATTTT
83804477 GATCTGTAAT
Statistics
Matches: 80, Mismatches: 16, Indels: 28
0.65 0.13 0.23
Matches are distributed among these distances:
49 5 0.06
50 19 0.24
51 12 0.15
52 14 0.17
53 12 0.15
54 13 0.16
55 5 0.06
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.41
Consensus pattern (49 bp):
GATTTTTATGTAAATAATGAATCAAAGCTCTACATTGTAGCATGAGTTT
Found at i:83806696 original size:29 final size:29
Alignment explanation
Indices: 83806656--83806711 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
83806646 ACAAGGGCTA
* *
83806656 GATCTAATTAGTCTCTT-TATTATTAAATG
1 GATCAAATTAGTC-CTTAAATTATTAAATG
83806685 GATCAAATTAGTCCTTAAATTATTAAA
1 GATCAAATTAGTCCTTAAATTATTAAA
83806712 AAGAATGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 3 0.12
29 21 0.88
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.43
Consensus pattern (29 bp):
GATCAAATTAGTCCTTAAATTATTAAATG
Found at i:83812297 original size:31 final size:31
Alignment explanation
Indices: 83812240--83812298 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
83812230 CAGCCCAATA
83812240 ACTTAAATAAAAACTTTCAAATAGTTCAGTG
1 ACTTAAATAAAAACTTTCAAATAGTTCAGTG
* * * *
83812271 ACTTGAATGAAAATTTTCGAATAGTTCA
1 ACTTAAATAAAAACTTTCAAATAGTTCA
83812299 ATAACCATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (31 bp):
ACTTAAATAAAAACTTTCAAATAGTTCAGTG
Found at i:83813705 original size:59 final size:61
Alignment explanation
Indices: 83813566--83813705 Score: 146
Period size: 59 Copynumber: 2.3 Consensus size: 61
83813556 ATTTTGGCCC
* * * * **
83813566 CTATAGTGAAATTCTCACTTTGATCCTTTTACTATTTTTTTTGGTCATATTGTCCTTTTTA
1 CTATAATGAAAATCTCACTTTGATCCTTTTACTATATTTTTTGATCATATTGTCCTTTACA
* *
83813627 TTATAAT-AAAATTCTCACTTTGA-CCTTTTTACTA-ATTTTTT-ATCATTTTGCTCC-TTACA
1 CTATAATGAAAA-TCTCACTTTGATCC-TTTTACTATATTTTTTGATCATATTG-TCCTTTACA
83813686 CTATAATGAAAATCTCACTT
1 CTATAATGAAAATCTCACTT
83813706 CGGCCGCTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 10
0.78 0.11 0.12
Matches are distributed among these distances:
59 24 0.36
60 18 0.27
61 24 0.36
ACGTcount: A:0.26, C:0.18, G:0.06, T:0.50
Consensus pattern (61 bp):
CTATAATGAAAATCTCACTTTGATCCTTTTACTATATTTTTTGATCATATTGTCCTTTACA
Found at i:83821664 original size:14 final size:14
Alignment explanation
Indices: 83821645--83821681 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
83821635 TCAAAATTGG
83821645 AAAAAATCACAAAA
1 AAAAAATCACAAAA
83821659 AAAAAATCACAAAA
1 AAAAAATCACAAAA
83821673 AAAAAATCA
1 AAAAAATCA
83821682 AAATTGAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.78, C:0.14, G:0.00, T:0.08
Consensus pattern (14 bp):
AAAAAATCACAAAA
Found at i:83824901 original size:290 final size:288
Alignment explanation
Indices: 83824348--83825137 Score: 1009
Period size: 290 Copynumber: 2.8 Consensus size: 288
83824338 GCAAGTCATA
* * * *
83824348 GTTGTTCTTTTATTGGCATTATGGTCCTATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCATG
1 GTTGTTTTTTTATTGGCATTACGTTCC-ATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCGTG
* *
83824413 TTAGCAAGTTATATCAATTTTGAAATGTTTCT-GTT-TCTTTTATTGGCATTATGGTTCCATCTT
65 TTAGCAAGTTATATCGATTTTGAAATGTTT-TGGTTGTTTTTTATTGGCATTATGGTTCCATCTT
* * * * * *
83824476 CCTACATTCAACTTTTCATTGCTTGGTTCGTATTAGCAAGTCATATTGA-TTTCAAAATGTTTTG
129 CCTACATT-TAGTTGTCATTGCTTGGTTCATGTTAGCAAGTTATATTGATTTTCAAAATGTTTTG
* * * * *
83824540 GTTGTTTTTTTATTGGCATTATGGTTCCATCTTCCTACATTCGAGTTTTCATTGCTTGGTTTGTG
193 GTTG-CTTTTTATTGGCTTTATGGTTCCATCTTCCTACATACAAGTTTTCATTGCTTGGTTCGTG
83824605 GTAGCAAGTTATATCGATTTCGAAATGTTTCT
257 GTAGCAAGTTATATCGATTTCGAAATGTTTCT
* *
83824637 GTTTTTTTTTTATTGGCATTACGTTCCATCTTCCTACATTCAAGTTTTCATTGCTTGGTTCGTGT
1 GTTGTTTTTTTATTGGCATTACGTTCCATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCGTGT
* *
83824702 TAGCAAGTTATATCGATTTTGGAAATCTTTTGGTTGTTTTTTATTGGCATTACGGTTCCATCTTC
66 TAGCAAGTTATATCGATTTT-GAAATGTTTTGGTTGTTTTTTATTGGCATTATGGTTCCATCTTC
83824767 CTACATTTGAGTTGTCATTGCTTGGTTCATGTTAGCAAGTTATATTGATTTTCAAAATGTTTTGG
130 CTACATTT-AGTTGTCATTGCTTGGTTCATGTTAGCAAGTTATATTGATTTTCAAAATGTTTTGG
* * *
83824832 TTGCTTTTTATTGGCTTTATGGTTCCATCTTCCTATATACAAGTTTTCATTGGTTGGTTCGTTGT
194 TTGCTTTTTATTGGCTTTATGGTTCCATCTTCCTACATACAAGTTTTCATTGCTTGGTTCGTGGT
83824897 AGCAAGTTATATCGATTTCGAAATGTTTCT
259 AGCAAGTTATATCGATTTCGAAATGTTTCT
* *
83824927 GTTGTTTTTTTATTGGAATTACGGTTCCATCTTCCTACATTCGAGCTTTCATTGCTTGGTTCGTG
1 GTTGTTTTTTTATTGGCATTAC-GTTCCATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCGTG
** * * ** * ** *
83824992 TTAGTGAGTTTTATTGATCTTCAAAATGTTTTGGTTGCTTTTT-TTGGTTTTATGGTTCAATCTT
65 TTAGCAAGTTATATCGAT-TTTGAAATGTTTTGGTTGTTTTTTATTGGCATTATGGTTCCATC-T
* ** *
83825056 TCCT-CA-TT-G-TG----TGC----TTCATGTTAGCGAGTTATATCAATTTTCAAAATATTTTG
128 TCCTACATTTAGTTGTCATTGCTTGGTTCATGTTAGCAAGTTATATTGATTTTCAAAATGTTTTG
* *
83825109 GTTGCTTTTTATTGACTTGATGGTTCCAT
193 GTTGCTTTTTATTGGCTTTATGGTTCCAT
83825138 TTTGGTCTGT
Statistics
Matches: 447, Mismatches: 46, Indels: 27
0.86 0.09 0.05
Matches are distributed among these distances:
278 62 0.14
282 3 0.01
286 2 0.00
287 1 0.00
288 56 0.13
289 36 0.08
290 189 0.42
291 96 0.21
292 2 0.00
ACGTcount: A:0.19, C:0.15, G:0.18, T:0.49
Consensus pattern (288 bp):
GTTGTTTTTTTATTGGCATTACGTTCCATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCGTGT
TAGCAAGTTATATCGATTTTGAAATGTTTTGGTTGTTTTTTATTGGCATTATGGTTCCATCTTCC
TACATTTAGTTGTCATTGCTTGGTTCATGTTAGCAAGTTATATTGATTTTCAAAATGTTTTGGTT
GCTTTTTATTGGCTTTATGGTTCCATCTTCCTACATACAAGTTTTCATTGCTTGGTTCGTGGTAG
CAAGTTATATCGATTTCGAAATGTTTCT
Found at i:83825059 original size:97 final size:96
Alignment explanation
Indices: 83824348--83825063 Score: 890
Period size: 97 Copynumber: 7.4 Consensus size: 96
83824338 GCAAGTCATA
*
83824348 GTTGTTCTTTTATTGGCATTATGG-TCCTATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCAT
1 GTTGTT-TTTTATTGGCATTATGGTTCC-ATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCGT
* *
83824412 GTTAGCAAGTTATATCAATTTTGAAATGTTTCT-
64 GTTAGCAAGTTATATCGATTTCGAAATGTTT-TG
* * * *
83824445 GTT-TCTTTTATTGGCATTATGGTTCCATCTTCCTACATTCAACTTTTCATTGCTTGGTTCGTAT
1 GTTGTTTTTTATTGGCATTATGGTTCCATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCGTGT
* * *
83824509 TAGCAAGTCATATTGATTTCAAAATGTTTTG
66 TAGCAAGTTATATCGATTTCGAAATGTTTTG
*
83824540 GTTGTTTTTTTATTGGCATTATGGTTCCATCTTCCTACATTCGAGTTTTCATTGCTTGGTTTGTG
1 GTTG-TTTTTTATTGGCATTATGGTTCCATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCGTG
*
83824605 GTAGCAAGTTATATCGATTTCGAAATGTTTCTG
65 TTAGCAAGTTATATCGATTTCGAAATGTTT-TG
* * * *
83824638 TTTTTTTTTTATTGGCATTA-CGTTCCATCTTCCTACATTCAAGTTTTCATTGCTTGGTTCGTGT
1 GTTGTTTTTTATTGGCATTATGGTTCCATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCGTGT
* *
83824702 TAGCAAGTTATATCGATTTTGGAAATCTTTTG
66 TAGCAAGTTATATCGA-TTTCGAAATGTTTTG
* * * *
83824734 GTTGTTTTTTATTGGCATTACGGTTCCATCTTCCTACATTTGAGTTGTCATTGCTTGGTTCATGT
1 GTTGTTTTTTATTGGCATTATGGTTCCATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCGTGT
* *
83824799 TAGCAAGTTATATTGATTTTCAAAATGTTTTG
66 TAGCAAGTTATATCGA-TTTCGAAATGTTTTG
* * * * * *
83824831 GTTGCTTTTTATTGGCTTTATGGTTCCATCTTCCTATATACAAGTTTTCATTGGTTGGTTCGT-T
1 GTTGTTTTTTATTGGCATTATGGTTCCATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCGTGT
83824895 GTAGCAAGTTATATCGATTTCGAAATGTTTCT-
66 -TAGCAAGTTATATCGATTTCGAAATGTTT-TG
* * *
83824927 GTTGTTTTTTTATTGGAATTACGGTTCCATCTTCCTACATTCGAGCTTTCATTGCTTGGTTCGTG
1 GTTG-TTTTTTATTGGCATTATGGTTCCATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCGTG
** * * *
83824992 TTAGTGAGTTTTATTGATCTTCAAAATGTTTTG
65 TTAGCAAGTTATATCGAT-TTCGAAATGTTTTG
* ** *
83825025 GTTGCTTTTT-TTGGTTTTATGGTTCAATCTTTCCT-CATT
1 GTTGTTTTTTATTGGCATTATGGTTCCATC-TTCCTACATT
83825064 GTGTGCTTCA
Statistics
Matches: 536, Mismatches: 69, Indels: 29
0.85 0.11 0.05
Matches are distributed among these distances:
94 1 0.00
95 78 0.15
96 116 0.22
97 321 0.60
98 20 0.04
ACGTcount: A:0.18, C:0.15, G:0.18, T:0.49
Consensus pattern (96 bp):
GTTGTTTTTTATTGGCATTATGGTTCCATCTTCCTACATTCGAGTTTTCATTGCTTGGTTCGTGT
TAGCAAGTTATATCGATTTCGAAATGTTTTG
Found at i:83831598 original size:33 final size:32
Alignment explanation
Indices: 83831550--83831621 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 32
83831540 TAACCTTCAT
*
83831550 TAAAAA-AAAACAAATAAAATGATTATAAT-ATGA
1 TAAAAACAAAACAAATAAAA--A-TAAAATAATGA
83831583 TAAAAACAAAA-AAATAAAAATAAAATAATGA
1 TAAAAACAAAACAAATAAAAATAAAATAATGA
83831614 TAAAAACA
1 TAAAAACA
83831622 CGTTCGGGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
30 5 0.14
31 13 0.36
33 14 0.39
34 4 0.11
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.19
Consensus pattern (32 bp):
TAAAAACAAAACAAATAAAAATAAAATAATGA
Found at i:83831601 original size:14 final size:16
Alignment explanation
Indices: 83831576--83831621 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 16
83831566 AAATGATTAT
*
83831576 AATATGATAAAAACAA
1 AATAAGATAAAAACAA
*
83831592 AA-AA-ATAAAAATAA
1 AATAAGATAAAAACAA
83831606 AATAATGATAAAAACA
1 AATAA-GATAAAAACA
83831622 CGTTCGGGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
14 11 0.46
15 3 0.12
16 2 0.08
17 8 0.33
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.17
Consensus pattern (16 bp):
AATAAGATAAAAACAA
Found at i:83848899 original size:14 final size:14
Alignment explanation
Indices: 83848877--83848907 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
83848867 TATTATTAGA
*
83848877 GAGGGCGTAAGTTT
1 GAGGACGTAAGTTT
83848891 GAGGACGTAAGTTT
1 GAGGACGTAAGTTT
83848905 GAG
1 GAG
83848908 TGTATTAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.42, T:0.26
Consensus pattern (14 bp):
GAGGACGTAAGTTT
Found at i:83852187 original size:14 final size:14
Alignment explanation
Indices: 83852166--83852207 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
83852156 GTTTGATTGC
83852166 CAGTAAAATATTTT
1 CAGTAAAATATTTT
*
83852180 CCGTAAAATGA-TTT
1 CAGTAAAAT-ATTTT
*
83852194 CAGGAAAATATTTT
1 CAGTAAAATATTTT
83852208 TCTTTTCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
13 1 0.04
14 21 0.91
15 1 0.04
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (14 bp):
CAGTAAAATATTTT
Found at i:83852220 original size:34 final size:35
Alignment explanation
Indices: 83852176--83852242 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
83852166 CAGTAAAATA
83852176 TTTTCCGTAAAATGATTT-CAGGAAAATATTTTTC
1 TTTTCCGTAAAATGATTTACAGGAAAATATTTTTC
* *
83852210 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACAGGAAAATATTTT
83852243 CTAGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACAGGAAAATATTTTTC
Found at i:83859094 original size:21 final size:21
Alignment explanation
Indices: 83859045--83859095 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
83859035 GATACGATAT
*
83859045 TAATATTTTAAAATTAAATTA
1 TAATATTTTAAAATTAAATAA
*
83859066 TAATATTTTAAAATTGAATAA
1 TAATATTTTAAAATTAAATAA
83859087 TCAA-ATTTT
1 T-AATATTTT
83859096 TTTATAGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
TAATATTTTAAAATTAAATAA
Found at i:83860195 original size:26 final size:27
Alignment explanation
Indices: 83860147--83860201 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
83860137 TCTAAATTCG
* *
83860147 AAAAATAAAATAATAACTAAGTTCTTA
1 AAAAATAAAATAAAAAATAAGTTCTTA
* *
83860174 AAAAATAAAA-AAAAAATTAGTTTTTA
1 AAAAATAAAATAAAAAATAAGTTCTTA
83860200 AA
1 AA
83860202 CTTGACAACT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 14 0.58
27 10 0.42
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (27 bp):
AAAAATAAAATAAAAAATAAGTTCTTA
Found at i:83864508 original size:31 final size:31
Alignment explanation
Indices: 83864472--83864539 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
83864462 TAACAGCAAC
83864472 TTAAATAAAAACTTTCAAATAGTTCAGTAAA
1 TTAAATAAAAACTTTCAAATAGTTCAGTAAA
** *
83864503 TTAAATAAAAACTTTTTAATATTTCAGTAAA
1 TTAAATAAAAACTTTCAAATAGTTCAGTAAA
83864534 TTAAAT
1 TTAAAT
83864540 GAAGCTTAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.38
Consensus pattern (31 bp):
TTAAATAAAAACTTTCAAATAGTTCAGTAAA
Found at i:83868758 original size:2 final size:2
Alignment explanation
Indices: 83868751--83868786 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
83868741 CAGGTATAAT
*
83868751 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TT TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
83868787 CTTTTATTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.47, T:0.53
Consensus pattern (2 bp):
TG
Found at i:83870198 original size:15 final size:17
Alignment explanation
Indices: 83870178--83870212 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
83870168 ATTATATTAT
83870178 TTTAAT-AATTTA-ATA
1 TTTAATAAATTTATATA
83870193 TTTAATAAATTTATATA
1 TTTAATAAATTTATATA
83870210 TTT
1 TTT
83870213 TTTATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 6 0.33
17 6 0.33
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTAATAAATTTATATA
Found at i:83877691 original size:73 final size:74
Alignment explanation
Indices: 83877531--83877733 Score: 254
Period size: 76 Copynumber: 2.8 Consensus size: 74
83877521 ACTAATAACG
* * *
83877531 TTCATGCTCTCAGCAAAATCGAGTATCTTACTCGGACTCGGGTATGAGTATTGAATACAGATATA
1 TTCATGCTATCAGCAAAATC-AGTATCTTATTCAGACTCGGGTATGAGTATTGAATACAGA-ATA
**
83877596 TGAGTGTCTTA
64 TGAGCATCTTA
* * * *
83877607 TTCATGCTATCAGCAAAATCAAGTATCATATTCAGACTC-AGTACGAGTATTGAATACAG-GTAT
1 TTCATGCTATCAGCAAAATC-AGTATCTTATTCAGACTCGGGTATGAGTATTGAATACAGAATAT
83877670 GAGCATCTTA
65 GAGCATCTTA
*
83877680 TTCATTCTATCAGCAAAATC---ATCTTATTCAGACTCGGGTATGAGTATTGAATAC
1 TTCATGCTATCAGCAAAATCAGTATCTTATTCAGACTCGGGTATGAGTATTGAATAC
83877734 TTGGTAATAA
Statistics
Matches: 112, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
69 14 0.12
70 16 0.14
73 30 0.27
75 18 0.16
76 34 0.30
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (74 bp):
TTCATGCTATCAGCAAAATCAGTATCTTATTCAGACTCGGGTATGAGTATTGAATACAGAATATG
AGCATCTTA
Found at i:83877760 original size:69 final size:71
Alignment explanation
Indices: 83877531--83877766 Score: 223
Period size: 69 Copynumber: 3.3 Consensus size: 71
83877521 ACTAATAACG
* * * * *
83877531 TTCATGCTCTCAGCAAAATCGAGTATCTTACTCGGACTCGGGTATGAGTATTGAATACAGATATA
1 TTCATGTTATCAGCAAAATC-A--ATCTTATTCAGACTCGGGTATGAGTATTGAATACAGGTA-A
*
83877596 TGAGTGTCTTA
62 TGAG-ATCTTA
* * * *
83877607 TTCATGCTATCAGCAAAATCAAGTATCATATTCAGACTC-AGTACGAGTATTGAATACAGGT-AT
1 TTCATGTTATCAGCAAAATC-A--ATCTTATTCAGACTCGGGTATGAGTATTGAATACAGGTAAT
83877670 GAGCATCTTA
63 GAG-ATCTTA
*
83877680 TTCAT-TCTATCAGCAAAATC-ATCTTATTCAGACTCGGGTATGAGTATTGAATACTTGGTAAT-
1 TTCATGT-TATCAGCAAAATCAATCTTATTCAGACTCGGGTATGAGTATTGAATAC-AGGTAATG
*
83877742 A-ATATTA
64 AGATCTTA
83877749 TTCATGTTATCAGCAAAA
1 TTCATGTTATCAGCAAAA
83877767 CCGAAGTAAC
Statistics
Matches: 139, Mismatches: 16, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
69 35 0.25
70 17 0.12
71 4 0.03
72 2 0.01
73 28 0.20
75 19 0.14
76 34 0.24
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (71 bp):
TTCATGTTATCAGCAAAATCAATCTTATTCAGACTCGGGTATGAGTATTGAATACAGGTAATGAG
ATCTTA
Found at i:83879222 original size:30 final size:30
Alignment explanation
Indices: 83879186--83879360 Score: 219
Period size: 30 Copynumber: 5.8 Consensus size: 30
83879176 ATTTTTCTCA
* *
83879186 ACTAGCCATACCTTTTCCACCACCATCTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
83879216 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
83879246 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
83879276 ACTAGCCACACCTTCTCCACCACCAAATCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* ** *
83879306 ACTAGCCACA-CTTGCTCCATTACCTACTCC
1 ACTAGCCACACCTT-TTCCACCACCAACTCC
* *
83879336 ACTAACCACA-CTTGCTCCACCACCA
1 ACTAGCCACACCTT-TTCCACCACCA
83879361 CTTGTACCTA
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
29 3 0.02
30 127 0.98
ACGTcount: A:0.26, C:0.48, G:0.04, T:0.22
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:83879937 original size:27 final size:27
Alignment explanation
Indices: 83879907--83880025 Score: 75
Period size: 27 Copynumber: 4.5 Consensus size: 27
83879897 ATTTTAAATT
83879907 CTATATTACGTATATATATATTTTATA
1 CTATATTACGTATATATATATTTTATA
* * * *
83879934 CTATTTTA--TTTATATATCTTTAATA
1 CTATATTACGTATATATATATTTTATA
* ** *
83879959 TTATATTATTTATATATATATTTTTTTA
1 CTATATTACGTATATATATA-TTTTATA
* * * *
83879987 C-ATGTTATCTTATGTATATATCTTA-A
1 CTATATTA-CGTATATATATATTTTATA
*
83880013 CTATATTATGTAT
1 CTATATTACGTAT
83880026 GTATTTTTAA
Statistics
Matches: 68, Mismatches: 19, Indels: 11
0.69 0.19 0.11
Matches are distributed among these distances:
25 20 0.29
26 5 0.07
27 28 0.41
28 15 0.22
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (27 bp):
CTATATTACGTATATATATATTTTATA
Found at i:83879947 original size:14 final size:13
Alignment explanation
Indices: 83879928--83879986 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 13
83879918 ATATATATAT
83879928 TTTATACTATTTTA
1 TTTATA-TATTTTA
83879942 TTTATATATCTTTAA
1 TTTATATAT-TTT-A
83879957 TATTATAT-TATTTA
1 T-TTATATAT-TTTA
*
83879971 TATATATATTTT-
1 TTTATATATTTTA
83879983 TTTA
1 TTTA
83879987 CATGTTATCT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
12 3 0.08
13 11 0.29
14 12 0.32
15 6 0.16
16 6 0.16
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.64
Consensus pattern (13 bp):
TTTATATATTTTA
Found at i:83879947 original size:25 final size:25
Alignment explanation
Indices: 83879919--83879977 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
83879909 ATATTACGTA
* *
83879919 TATATATATTTTATACTATTTTATT
1 TATATATATTTAATACTATATTATT
* *
83879944 TATATATCTTTAATATTATATTATT
1 TATATATATTTAATACTATATTATT
83879969 TATATATAT
1 TATATATAT
83879978 ATTTTTTTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATT
Found at i:83880024 original size:22 final size:24
Alignment explanation
Indices: 83879996--83880054 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
83879986 ACATGTTATC
83879996 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
83880018 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
83880043 TTATGTACATAT
1 TTATGTATATAT
83880055 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:83880044 original size:25 final size:25
Alignment explanation
Indices: 83880012--83880060 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
83880002 ATATATCTTA
**
83880012 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
83880037 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
83880061 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:83880237 original size:16 final size:15
Alignment explanation
Indices: 83880213--83880260 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
83880203 TAATTATTAT
*
83880213 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
83880229 TATTTTAATATTTTA
1 TATTTTAATATTTTA
83880244 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
83880260 T
1 T
83880261 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:83880248 original size:7 final size:8
Alignment explanation
Indices: 83880213--83880264 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
83880203 TAATTATTAT
*
83880213 TATTCTAA
1 TATTTTAA
*
83880221 TATTTTGA
1 TATTTTAA
83880229 TATTTTAA
1 TATTTTAA
83880237 TATTTT-A
1 TATTTTAA
83880244 TATTTTATA
1 TATTTTA-A
*
83880253 TATTTTAT
1 TATTTTAA
83880261 TATT
1 TATT
83880265 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:83892712 original size:14 final size:14
Alignment explanation
Indices: 83892681--83892731 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
83892671 TGCTGAGGTC
83892681 TTTTT-AATTTCTG
1 TTTTTCAATTTCTG
*
83892694 CTTTTCAATTTCTG
1 TTTTTCAATTTCTG
* *
83892708 TTTTTTTCAATTTATA
1 --TTTTTCAATTTCTG
83892724 TTTTTCAA
1 TTTTTCAA
83892732 AAATCAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 4 0.13
14 16 0.52
16 11 0.35
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.65
Consensus pattern (14 bp):
TTTTTCAATTTCTG
Found at i:83892727 original size:16 final size:16
Alignment explanation
Indices: 83892695--83892728 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
83892685 TAATTTCTGC
* *
83892695 TTTTCAATTTCTGTTT
1 TTTTCAATTTATATTT
83892711 TTTTCAATTTATATTT
1 TTTTCAATTTATATTT
83892727 TT
1 TT
83892729 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.09, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTCAATTTATATTT
Found at i:83892905 original size:77 final size:76
Alignment explanation
Indices: 83892803--83893050 Score: 356
Period size: 77 Copynumber: 3.2 Consensus size: 76
83892793 AAATCTACTT
* *
83892803 TTGCGAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAG
1 TTGCGAGAGGTGAGTTGAGCCTTTGCTCACATGCTGAGCTATTTTCAATTTCTGCTTTTCAAAA-
83892868 AATCAACTCATA
65 AATCAACTCATA
* * *
83892880 TTGTGAGAGGTGAGTTGAGCATTTGCTCACATGCTGAGCTATTTTCAATTTATGCTTTTCAAAAA
1 TTGCGAGAGGTGAGTTGAGCCTTTGCTCACATGCTGAGCTATTTTCAATTTCTGCTTTTC-AAAA
83892945 AATCAACTCATA
65 AATCAACTCATA
** * ** *
83892957 TTGCGAGAGGTGAGTTGAGCCTCGGGTCACACACTGAGGC-GTTTTCAATTTCTGCTTTTC-AAA
1 TTGCGAGAGGTGAGTTGAGCCTTTGCTCACATGCTGA-GCTATTTTCAATTTCTGCTTTTCAAAA
83893020 AATCAACTCATA
65 AATCAACTCATA
83893032 TTGCGAGAGGTGAGTTGAG
1 TTGCGAGAGGTGAGTTGAG
83893051 TCTCGGGCCA
Statistics
Matches: 155, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
75 34 0.22
77 115 0.74
78 6 0.04
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (76 bp):
TTGCGAGAGGTGAGTTGAGCCTTTGCTCACATGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAA
ATCAACTCATA
Found at i:83893056 original size:75 final size:74
Alignment explanation
Indices: 83892844--83893090 Score: 309
Period size: 77 Copynumber: 3.2 Consensus size: 74
83892834 TGCTGAGCTA
* ** *
83892844 TTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGTGAGAGGTGAGTTGAGCATTTGCTCA
1 TTTTCAATTTCTGCTTTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGC-TCGGGTCA
*
83892909 CATGCTGA-GC
64 CACGCTGAGGC
*
83892919 TATTTTCAATTTATGCTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGCTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTCGGGT
*
83892984 CACACACTGAGGC
62 CACACGCTGAGGC
*
83892997 GTTTTCAATTTCTGCTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCA
1 -TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTCGGGTCA
83893061 CACGCTGAGGTC
64 CACGCTGAGG-C
* *
83893073 TTTTCAAATTCTGTTTTT
1 TTTTCAATTTCTGCTTTT
83893091 AATTTCTGCT
Statistics
Matches: 152, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
75 67 0.44
76 1 0.01
77 77 0.51
78 7 0.05
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (74 bp):
TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTCGGGTCACA
CGCTGAGGC
Found at i:83893118 original size:14 final size:14
Alignment explanation
Indices: 83893073--83893135 Score: 74
Period size: 14 Copynumber: 4.5 Consensus size: 14
83893063 CGCTGAGGTC
*
83893073 TTTTCAAATTCTGT
1 TTTTCAATTTCTGT
*
83893087 TTTT-AATTTCTGC
1 TTTTCAATTTCTGT
83893100 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
* *
83893114 TTTTCCAATTTATAT
1 TTTT-CAATTTCTGT
83893129 TTTTCAA
1 TTTTCAA
83893136 AAATCAACTC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 11 0.26
14 19 0.45
15 12 0.29
ACGTcount: A:0.21, C:0.14, G:0.05, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:83893222 original size:117 final size:116
Alignment explanation
Indices: 83893012--83893223 Score: 266
Period size: 117 Copynumber: 1.8 Consensus size: 116
83893002 CAATTTCTGC
* * *
83893012 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACACGCTGAGGTCTTTT
1 TTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCGGGCCACACGCTGAGGTATTTT
* * * **
83893077 CAAATTCTGTTTTTAATTTCTGCTTTTCAATTTCTGTTTTTCCAATTTATAT
66 CAAAATCTGTTTTCAAATTAAGC-TTTCAATTTCTGTTTTTCCAATTTATAT
* * * *
83893129 TTTTCAAAAATCAACTCATATCGCGAGATGTGAGTTGAGCCTTGGGTTCACATG-TCGAGGTATT
1 TTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCGGG-CCACACGCT-GAGGTATT
83893193 TTCAAAATCTGCTTTTCAAATTAAG-TTTCAA
64 TTCAAAATCTG-TTTTCAAATTAAGCTTTCAA
83893224 AAAAACCAAC
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
117 49 0.61
118 22 0.28
119 9 0.11
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (116 bp):
TTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTCGGGCCACACGCTGAGGTATTTT
CAAAATCTGTTTTCAAATTAAGCTTTCAATTTCTGTTTTTCCAATTTATAT
Found at i:83893749 original size:25 final size:25
Alignment explanation
Indices: 83893715--83893763 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
83893705 ATATGTCTTA
*
83893715 ACTATATTATGTATATATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
83893740 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
83893764 TATTATCACG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:83893937 original size:16 final size:15
Alignment explanation
Indices: 83893913--83893960 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
83893903 TAATTATTAT
*
83893913 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
83893929 TATTTTAATATTTTA
1 TATTTTAATATTTTA
83893944 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
83893960 T
1 T
83893961 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:83893948 original size:7 final size:8
Alignment explanation
Indices: 83893913--83893964 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
83893903 TAATTATTAT
*
83893913 TATTCTAA
1 TATTTTAA
*
83893921 TATTTTGA
1 TATTTTAA
83893929 TATTTTAA
1 TATTTTAA
83893937 TATTTT-A
1 TATTTTAA
83893944 TATTTTATA
1 TATTTTA-A
*
83893953 TATTTTAT
1 TATTTTAA
83893961 TATT
1 TATT
83893965 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:83898024 original size:23 final size:23
Alignment explanation
Indices: 83897995--83898071 Score: 154
Period size: 23 Copynumber: 3.3 Consensus size: 23
83897985 TTTTCGAATT
83897995 ATTCGAGTCAACTCGAATAAGTA
1 ATTCGAGTCAACTCGAATAAGTA
83898018 ATTCGAGTCAACTCGAATAAGTA
1 ATTCGAGTCAACTCGAATAAGTA
83898041 ATTCGAGTCAACTCGAATAAGTA
1 ATTCGAGTCAACTCGAATAAGTA
83898064 ATTCGAGT
1 ATTCGAGT
83898072 TTCAAGTTTG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (23 bp):
ATTCGAGTCAACTCGAATAAGTA
Found at i:83903995 original size:29 final size:29
Alignment explanation
Indices: 83903953--83904012 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
83903943 GGATGCGAGA
83903953 AAATGAAGAGTGCTTGGAACATAGATTCT
1 AAATGAAGAGTGCTTGGAACATAGATTCT
83903982 AAATGAAGAGTGCTTGGAACATAGATTCT
1 AAATGAAGAGTGCTTGGAACATAGATTCT
83904011 AA
1 AA
83904013 CAATGGGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (29 bp):
AAATGAAGAGTGCTTGGAACATAGATTCT
Found at i:83913129 original size:32 final size:31
Alignment explanation
Indices: 83913037--83913131 Score: 95
Period size: 31 Copynumber: 3.0 Consensus size: 31
83913027 AATTAGCAGC
* * *
83913037 TTAATAAGAATTTCCAAAAACTTTGGAGGGT-
1 TTAATGAGAATTTTCAAAAA-TTTGGAGAGTA
* *
83913068 TTAATTAAAATTTAT-AAAAATTTGGAGAGTA
1 TTAATGAGAATTT-TCAAAAATTTGGAGAGTA
*
83913099 TTCATGAGAATTTTCAAAAATTTTGGAGAGTA
1 TTAATGAGAATTTTCAAAAA-TTTGGAGAGTA
83913131 T
1 T
83913132 AATTAAAGTT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
30 10 0.19
31 31 0.58
32 12 0.23
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (31 bp):
TTAATGAGAATTTTCAAAAATTTGGAGAGTA
Found at i:83924624 original size:31 final size:31
Alignment explanation
Indices: 83924589--83924652 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
83924579 GTATTCTAAT
*
83924589 TTGATCAATTTTAG-TATTTATACTTTTTAAA
1 TTGATCAATTTCAGTTA-TTATACTTTTTAAA
*
83924620 TTGATCAATTTCAGTTATTGTACTTTTTAAA
1 TTGATCAATTTCAGTTATTATACTTTTTAAA
83924651 TT
1 TT
83924653 TTAAAATTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 28 0.93
32 2 0.07
ACGTcount: A:0.30, C:0.08, G:0.08, T:0.55
Consensus pattern (31 bp):
TTGATCAATTTCAGTTATTATACTTTTTAAA
Found at i:83932763 original size:15 final size:15
Alignment explanation
Indices: 83932743--83932772 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
83932733 CTCATTCCTG
83932743 TCTCCAAAGCCATAT
1 TCTCCAAAGCCATAT
83932758 TCTCCAAAGCCATAT
1 TCTCCAAAGCCATAT
83932773 ATATGATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.07, T:0.27
Consensus pattern (15 bp):
TCTCCAAAGCCATAT
Found at i:83937284 original size:38 final size:38
Alignment explanation
Indices: 83937242--83937319 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
83937232 GAATCGAGTA
83937242 AAAATTTATTTATTTGAGTTAATTTGAGAAAAACGTTT
1 AAAATTTATTTATTTGAGTTAATTTGAGAAAAACGTTT
83937280 AAAATTTATTTATTTGAGTTAATTTGAGAAAAACGTTT
1 AAAATTTATTTATTTGAGTTAATTTGAGAAAAACGTTT
83937318 AA
1 AA
83937320 CTTAAATAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.41, C:0.03, G:0.13, T:0.44
Consensus pattern (38 bp):
AAAATTTATTTATTTGAGTTAATTTGAGAAAAACGTTT
Found at i:83947616 original size:6 final size:6
Alignment explanation
Indices: 83947605--83947648 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
83947595 TTTCTTTGGT
* * * *
83947605 GGTGGA GGTGGA GGAGGA GGAGGT GGTGGG GGTGGA GGTGGA GG
1 GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GGTGGA GG
83947649 AGGTGATGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.16, C:0.00, G:0.70, T:0.14
Consensus pattern (6 bp):
GGTGGA
Found at i:83947629 original size:24 final size:24
Alignment explanation
Indices: 83947602--83947653 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
83947592 TAGTTTCTTT
83947602 GGTGGTGGAGGTGGAGGAGGAGGA
1 GGTGGTGGAGGTGGAGGAGGAGGA
* *
83947626 GGTGGTGGGGGTGGAGGTGGAGGA
1 GGTGGTGGAGGTGGAGGAGGAGGA
83947650 GGTG
1 GGTG
83947654 ATGCTTCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.69, T:0.15
Consensus pattern (24 bp):
GGTGGTGGAGGTGGAGGAGGAGGA
Found at i:83953986 original size:6 final size:6
Alignment explanation
Indices: 83953977--83954006 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
83953967 CGAATTCTAA
83953977 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
83954007 CAGATGCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:83955793 original size:24 final size:24
Alignment explanation
Indices: 83955747--83955792 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
83955737 ATTAGTACAA
*
83955747 TAATTAAATAAATAAAACTAAAAG
1 TAATTAAACAAATAAAACTAAAAG
*
83955771 TAATTAAACATATAAAA-TAAAA
1 TAATTAAACAAATAAAACTAAAA
83955793 AAAATATCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.26
Consensus pattern (24 bp):
TAATTAAACAAATAAAACTAAAAG
Found at i:83955980 original size:63 final size:63
Alignment explanation
Indices: 83955907--83956032 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
83955897 ACAAGTTTAA
*
83955907 ACACCAAATCAAGCAAAATATGTTTGAATATATGAATTTCCTTTGTAGACAAATTAATTTATT
1 ACACCAAATCAAGCAAAATATGTCTGAATATATGAATTTCCTTTGTAGACAAATTAATTTATT
*
83955970 ACACCAAATCAAGCAAAATATGTCTGAATATATGAATTTCTTTTGTAGACAAATTAATTTATT
1 ACACCAAATCAAGCAAAATATGTCTGAATATATGAATTTCCTTTGTAGACAAATTAATTTATT
83956033 GAATTAGTAA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.37
Consensus pattern (63 bp):
ACACCAAATCAAGCAAAATATGTCTGAATATATGAATTTCCTTTGTAGACAAATTAATTTATT
Found at i:83957101 original size:24 final size:23
Alignment explanation
Indices: 83957068--83957113 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
83957058 TTTTAATTAA
*
83957068 TAAAATAATTAAATAAATAAAAC
1 TAAAATAATTAAACAAATAAAAC
*
83957091 TAAAAGTAATTAAACATATAAAA
1 TAAAA-TAATTAAACAAATAAAA
83957114 TACAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.26
Consensus pattern (23 bp):
TAAAATAATTAAACAAATAAAAC
Found at i:83964382 original size:15 final size:15
Alignment explanation
Indices: 83964364--83964392 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
83964354 TTTGAGTCGA
83964364 ATTATTTTTATTAAT
1 ATTATTTTTATTAAT
83964379 ATTATTTTTATTAA
1 ATTATTTTTATTAA
83964393 ATTTGGACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTATTTTTATTAAT
Found at i:83975397 original size:8 final size:8
Alignment explanation
Indices: 83975380--83975415 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
83975370 TTTTTTTCAT
83975380 ATATATAC
1 ATATATAC
*
83975388 ATACATAC
1 ATATATAC
83975396 ATATATAC
1 ATATATAC
83975404 ATATATAC
1 ATATATAC
83975412 ATAT
1 ATAT
83975416 GGCTTCTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (8 bp):
ATATATAC
Found at i:83981985 original size:16 final size:16
Alignment explanation
Indices: 83981964--83982005 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
83981954 AATAATTTGA
*
83981964 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
83981980 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
83981996 TAGTTTTAAT
1 TAATTTTAAT
83982006 TTTATTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:83981989 original size:22 final size:23
Alignment explanation
Indices: 83981979--83982040 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 23
83981969 TTACTAACAA
* * *
83981979 TTAATTTTA-ATAACAATTAGTT
1 TTAATTTTATATAAAAAATAATT
*
83982001 TTAATTTTATTTAAAAAATAATT
1 TTAATTTTATATAAAAAATAATT
*
83982024 TTAATTTTA-ATTAAAAA
1 TTAATTTTATATAAAAAA
83982041 CGGGCCGGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
22 15 0.45
23 18 0.55
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (23 bp):
TTAATTTTATATAAAAAATAATT
Found at i:83987452 original size:38 final size:38
Alignment explanation
Indices: 83987407--83987482 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
83987397 TTTATTTTAA
* *
83987407 TTTTTATTTAAAGTTATATTAATTTGCGCCACTAATTT
1 TTTTTATTTAAAGTTATACTAATTTGAGCCACTAATTT
*
83987445 TTTTTATTTAAAGTTATACTAATTTTAGCCACTAATTT
1 TTTTTATTTAAAGTTATACTAATTTGAGCCACTAATTT
83987483 ATGCCAATCT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.53
Consensus pattern (38 bp):
TTTTTATTTAAAGTTATACTAATTTGAGCCACTAATTT
Found at i:83987694 original size:29 final size:29
Alignment explanation
Indices: 83987656--83987712 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
83987646 ACGTTTACTG
83987656 TTCAAAATAGGTCATTTACGTAAATAATT
1 TTCAAAATAGGTCATTTACGTAAATAATT
* **
83987685 TTCAAAATAGGTTATTTGTGTAAATAAT
1 TTCAAAATAGGTCATTTACGTAAATAAT
83987713 CAAAAGTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (29 bp):
TTCAAAATAGGTCATTTACGTAAATAATT
Found at i:83987855 original size:30 final size:31
Alignment explanation
Indices: 83987807--83987872 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
83987797 TTCATTTCAG
*
83987807 TCACTCAACTTTTGAAAAA-TAACAAAACAA
1 TCACTCAACTTTTAAAAAAGTAACAAAACAA
*
83987837 TCACT-AACTTTATAAAAAAGTAACAAAACAG
1 TCACTCAACTTT-TAAAAAAGTAACAAAACAA
83987868 TCACT
1 TCACT
83987873 GATTAACAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
29 6 0.19
30 11 0.34
31 15 0.47
ACGTcount: A:0.52, C:0.20, G:0.05, T:0.24
Consensus pattern (31 bp):
TCACTCAACTTTTAAAAAAGTAACAAAACAA
Found at i:83993411 original size:39 final size:39
Alignment explanation
Indices: 83993368--83993445 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
83993358 TACCAATCAA
83993368 AGCTCACATTCCCTTTTGTCCACAATTTAGTTTTTCCTT
1 AGCTCACATTCCCTTTTGTCCACAATTTAGTTTTTCCTT
83993407 AGCTCACATTCCCTTTTGTCCACAATTTAGTTTTTCCTT
1 AGCTCACATTCCCTTTTGTCCACAATTTAGTTTTTCCTT
83993446 TTATGAAACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.18, C:0.28, G:0.08, T:0.46
Consensus pattern (39 bp):
AGCTCACATTCCCTTTTGTCCACAATTTAGTTTTTCCTT
Found at i:83994372 original size:4 final size:4
Alignment explanation
Indices: 83994363--83994389 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
83994353 TTGTTTTGTG
83994363 TGTA TGTA TGTA TGTA TGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGT
83994390 GGTTGTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:83998242 original size:40 final size:40
Alignment explanation
Indices: 83998198--83998277 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
83998188 ACCGCACCGC
83998198 ACCGTGCACCTAATTGCCCATCTAAACCCACCCTTAATGT
1 ACCGTGCACCTAATTGCCCATCTAAACCCACCCTTAATGT
*
83998238 ACCGTGCACCTAATTGCCCATTTAAACCCACCCTTAATGT
1 ACCGTGCACCTAATTGCCCATCTAAACCCACCCTTAATGT
83998278 TCTCTTACAC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.28, C:0.36, G:0.10, T:0.26
Consensus pattern (40 bp):
ACCGTGCACCTAATTGCCCATCTAAACCCACCCTTAATGT
Found at i:84005633 original size:20 final size:20
Alignment explanation
Indices: 84005608--84005647 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
84005598 CGTAAAATGA
*
84005608 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
84005628 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
84005648 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:84005637 original size:34 final size:34
Alignment explanation
Indices: 84005594--84005659 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 34
84005584 AGTAAAATAT
*
84005594 TTTTCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCGTAAAATGATTTACTGGAAAATATTTTAC
84005627 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTC-GTAAAATGATTTACTGGAAAATATTTT
84005660 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 5 0.17
34 12 0.40
35 13 0.43
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.47
Consensus pattern (34 bp):
TTTTCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:84017364 original size:21 final size:21
Alignment explanation
Indices: 84017338--84017378 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
84017328 AGACGAGCAA
* *
84017338 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
84017359 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
84017379 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Done.