Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 264 of 279
Found at i:86004224 original size:29 final size:28
Alignment explanation
Indices: 86004162--86004258 Score: 140
Period size: 29 Copynumber: 3.4 Consensus size: 28
86004152 GTAAGTCCGT
* * * *
86004162 ACACTTAGTGTTATATAATCGAACTCGC
1 ACACTTAGTGCTATACAATTGAACCCGC
86004190 ACACTTAGTGCTATACAACTTGAACCCGC
1 ACACTTAGTGCTATACAA-TTGAACCCGC
86004219 ACACTTAGTGCTATACAATTTGAACCCGC
1 ACACTTAGTGCTATACAA-TTGAACCCGC
86004248 ACACTTAGTGC
1 ACACTTAGTGC
86004259 CAATTTCATG
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
28 16 0.25
29 47 0.75
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (28 bp):
ACACTTAGTGCTATACAATTGAACCCGC
Found at i:86013639 original size:18 final size:18
Alignment explanation
Indices: 86013618--86013680 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 18
86013608 ATACTCAATC
86013618 TCTTTTTCAATTTTCTTT
1 TCTTTTTCAATTTTCTTT
* * *
86013636 TCTTGATTAAATTCT-TTT
1 TCTT-TTTCAATTTTCTTT
86013654 TCTTTTTCAA-TTTCATTTT
1 TCTTTTTCAATTTTC--TTT
86013673 TCTTTTTC
1 TCTTTTTC
86013681 TCATTCTCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
16 2 0.06
17 4 0.11
18 11 0.31
19 18 0.51
ACGTcount: A:0.14, C:0.16, G:0.02, T:0.68
Consensus pattern (18 bp):
TCTTTTTCAATTTTCTTT
Found at i:86013743 original size:18 final size:17
Alignment explanation
Indices: 86013710--86013745 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
86013700 TTTCACACTC
*
86013710 TTTTTCTTTCATTTCTT
1 TTTTTCTTTCAATTCTT
86013727 TTTTTCTTTCAAATTCTT
1 TTTTTCTTTC-AATTCTT
86013745 T
1 T
86013746 CTCACATGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.11, C:0.17, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTTCTTTCAATTCTT
Found at i:86013745 original size:33 final size:34
Alignment explanation
Indices: 86013672--86013745 Score: 82
Period size: 33 Copynumber: 2.2 Consensus size: 34
86013662 AATTTCATTT
*
86013672 TTCTTTTTCTCATTCTCTTTTTGCTCTCTTTCACA
1 TTCTTTTTCTCATTCTCTTTTT-CTCTCTTTCAAA
*
86013707 CTCTTTTTCTTTCATT-TCTTTTT-T-TCTTTCAAA
1 TTCTTTTTC--TCATTCTCTTTTTCTCTCTTTCAAA
86013740 TTCTTT
1 TTCTTT
86013746 CTCACATGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
33 13 0.38
34 1 0.03
35 8 0.24
36 7 0.21
37 5 0.15
ACGTcount: A:0.09, C:0.24, G:0.01, T:0.65
Consensus pattern (34 bp):
TTCTTTTTCTCATTCTCTTTTTCTCTCTTTCAAA
Found at i:86017149 original size:38 final size:38
Alignment explanation
Indices: 86017107--86017180 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
86017097 GAACAAGAAG
86017107 TAAATGCATAAAAATAAACTCTAATCTAAGGCAGAAAA
1 TAAATGCATAAAAATAAACTCTAATCTAAGGCAGAAAA
86017145 TAAATGCATAAAAATAAACTCTAATCTAAGGCAGAA
1 TAAATGCATAAAAATAAACTCTAATCTAAGGCAGAA
86017181 GAAGAGAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.54, C:0.14, G:0.11, T:0.22
Consensus pattern (38 bp):
TAAATGCATAAAAATAAACTCTAATCTAAGGCAGAAAA
Found at i:86019265 original size:42 final size:42
Alignment explanation
Indices: 86019186--86019272 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
86019176 ATGCAATAAC
* * *
86019186 AAAAATTAAAAACAAAGAAGAAAAATATTTTTGGATTTT-TG
1 AAAAATTAAAAACAAAAAAAAAAAATATTTTGGGATTTTATG
86019227 AAAAATTAAAAACAAAAACAAAAAAATATTTTGGGATTTTATG
1 AAAAATTAAAAACAAAAA-AAAAAAATATTTTGGGATTTTATG
86019270 AAA
1 AAA
86019273 TTTTTTATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 17 0.41
42 19 0.46
43 5 0.12
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.29
Consensus pattern (42 bp):
AAAAATTAAAAACAAAAAAAAAAAATATTTTGGGATTTTATG
Found at i:86024802 original size:17 final size:17
Alignment explanation
Indices: 86024780--86024817 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
86024770 AATATGTATA
86024780 GCTAGACTCTCACACAT
1 GCTAGACTCTCACACAT
*
86024797 GCTAGACTCTCACATAT
1 GCTAGACTCTCACACAT
86024814 GCTA
1 GCTA
86024818 CGTTAGTCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.29, C:0.32, G:0.13, T:0.26
Consensus pattern (17 bp):
GCTAGACTCTCACACAT
Found at i:86041201 original size:41 final size:41
Alignment explanation
Indices: 86041081--86041230 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
86041071 CGCTGACTCA
*
86041081 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * * *
86041122 GAAGGCCCTTCGAAACTAGGTTAGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
86041162 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
86041203 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
86041231 TAAACCCCGA
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
40 32 0.34
41 61 0.66
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:86049002 original size:41 final size:41
Alignment explanation
Indices: 86048879--86049028 Score: 178
Period size: 41 Copynumber: 3.7 Consensus size: 41
86048869 CGCTGACTCA
* *
86048879 AAAAGCCCTTCGAGACCAAGCTC-GAATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCAG-ATTATGACACTGGCTC
* * * * * * *
86048920 GAAGGCCCATCGAAACTAGGTTCAG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCAGATTATGACACTGGCTC
*
86048960 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCAGATTATGACACTGGCTC
*
86049001 AAAAGCCTTTCGAGACCAAGCTCAGATT
1 AAAAGCCCTTCGAGACCAAGCTCAGATT
86049029 TAAACCCCGA
Statistics
Matches: 88, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
40 30 0.34
41 57 0.65
42 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCAGATTATGACACTGGCTC
Found at i:86053215 original size:13 final size:13
Alignment explanation
Indices: 86053197--86053223 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86053187 GCTCGGTAGG
86053197 GACACGCCCGTGT
1 GACACGCCCGTGT
86053210 GACACGCCCGTGT
1 GACACGCCCGTGT
86053223 G
1 G
86053224 CGATTACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:86060302 original size:53 final size:54
Alignment explanation
Indices: 86060234--86060435 Score: 185
Period size: 53 Copynumber: 3.8 Consensus size: 54
86060224 TTCCTTTTTA
* *
86060234 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
86060287 AACTCACCATTGCCATGCCTTGGCATGGTTTTACATGGGATCTTTGCCTTATCG
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * * *
86060341 TAGTTTATCAATGCCTTGTCGTGACATGGTCTTACAT-GAATTCCTTGCCTTCTAA
1 -AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTA-TCCTTGCCTTATAG
* *
86060396 AACTTACCA-TGCCATGCCTTGGCATGGTCTTACTTGGTAT
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTAT
86060436 ACTTAAACCC
Statistics
Matches: 114, Mismatches: 31, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
53 67 0.59
54 11 0.10
55 36 0.32
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (54 bp):
AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:86067748 original size:53 final size:54
Alignment explanation
Indices: 86067680--86067884 Score: 184
Period size: 53 Copynumber: 3.8 Consensus size: 54
86067670 TTCCTTTTTA
* * *
86067680 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * * *
86067733 AACTCACCATTGCCATGCCATGGCATGGTTTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * *
86067787 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGACT-TCCTTGCC-TAGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTATCCTTGCCTTA-TAG
*
86067842 AACTTACCAATGCCATGCCTT-AGCATGGTCTTACTTGGTATCC
1 AACTTACCAATGCCATGCCTTGA-CATGGTCTTACATGGTATCC
86067885 GTAAACCCTA
Statistics
Matches: 118, Mismatches: 28, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
53 46 0.39
54 36 0.31
55 36 0.31
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:86079228 original size:16 final size:16
Alignment explanation
Indices: 86079209--86079245 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
86079199 TTTCATTAAG
86079209 TTTTTAAGACTCATTT
1 TTTTTAAGACTCATTT
*
86079225 TTTTTAAGATTCATTT
1 TTTTTAAGACTCATTT
*
86079241 GTTTT
1 TTTTT
86079246 CCTTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.62
Consensus pattern (16 bp):
TTTTTAAGACTCATTT
Found at i:86084228 original size:15 final size:15
Alignment explanation
Indices: 86084208--86084237 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
86084198 TACACAAATC
86084208 ACTAAATTAAATATA
1 ACTAAATTAAATATA
86084223 ACTAAATTAAATATA
1 ACTAAATTAAATATA
86084238 CCTATTCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (15 bp):
ACTAAATTAAATATA
Found at i:86086538 original size:29 final size:29
Alignment explanation
Indices: 86086477--86086560 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 29
86086467 ACATACCTGT
* * * * *
86086477 ATATAGCCCACTAGGCCC-AATCTCTTTT
1 ATATGGCCCATTAGGCCCAAATCACATTC
86086505 ATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
86086534 ATATGG-CCATTAGGCCCAAATCACATT
1 ATATGGCCCATTAGGCCCAAATCACATT
86086561 TACAGTTATG
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
28 37 0.74
29 13 0.26
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:86086809 original size:16 final size:16
Alignment explanation
Indices: 86086776--86086821 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
86086766 GTAGCCAAGC
*
86086776 TTTTGGCTTTTCGGTA
1 TTTTGGCTTTTCAGTA
*
86086792 TTTTGGCTTTTCATTA
1 TTTTGGCTTTTCAGTA
* *
86086808 TTTCGTCTTTTCAG
1 TTTTGGCTTTTCAG
86086822 CTTTTGTCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.09, C:0.15, G:0.17, T:0.59
Consensus pattern (16 bp):
TTTTGGCTTTTCAGTA
Found at i:86091082 original size:28 final size:29
Alignment explanation
Indices: 86091020--86091125 Score: 119
Period size: 28 Copynumber: 3.8 Consensus size: 29
86091010 ACATACCTGT
* * * *
86091020 ATATGGCCCACTAAGCCCAG-TCTCTTTC
1 ATATGGCCCATTAGGCCCAGATCACATTC
*
86091048 ATATGGCCCATTAGGCCCA-ATCACATTT
1 ATATGGCCCATTAGGCCCAGATCACATTC
* *
86091076 ATGTGGCCCATTAGGCCTAGATCACATTC
1 ATATGGCCCATTAGGCCCAGATCACATTC
*
86091105 ATATTG-CCATTAGGCCCAGAT
1 ATATGGCCCATTAGGCCCAGAT
86091126 AAGATTTACA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
28 53 0.82
29 12 0.18
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAGATCACATTC
Found at i:86092731 original size:53 final size:53
Alignment explanation
Indices: 86092646--86092750 Score: 129
Period size: 53 Copynumber: 2.0 Consensus size: 53
86092636 TTCTTTTTTA
* ** ** *
86092646 AACTTACTATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTATG
1 AACTCACTATTGCCATCCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * *
86092699 AACTCACTATTTCCATCCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACTATTGCCATCCCTTGACATGGTCTTACATGGGATCCTTGCCTTAT
86092751 CGTAGTTTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.40
Consensus pattern (53 bp):
AACTCACTATTGCCATCCCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:86095519 original size:31 final size:31
Alignment explanation
Indices: 86095476--86095559 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
86095466 TTAGTCTTAA
86095476 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
* *
86095506 CATATCACTGGGCCGAAGACTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
86095537 CATATCACAGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
86095560 ACTGTAAACG
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:86095633 original size:42 final size:42
Alignment explanation
Indices: 86095584--86095673 Score: 137
Period size: 42 Copynumber: 2.1 Consensus size: 42
86095574 GGCCCTTAGG
* * *
86095584 CCATTTCAATATCACATGTGATGTCGAT-AGATGTATGCAAGC
1 CCATTTCAATATCACATGTAATGTCAATGA-ATGTATACAAGC
86095626 CCATTTCAATATCACATGTAATGTCAATGAATGTATACAAGC
1 CCATTTCAATATCACATGTAATGTCAATGAATGTATACAAGC
86095668 CCATTT
1 CCATTT
86095674 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 43 0.98
43 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.32
Consensus pattern (42 bp):
CCATTTCAATATCACATGTAATGTCAATGAATGTATACAAGC
Found at i:86096608 original size:27 final size:26
Alignment explanation
Indices: 86096578--86096642 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 26
86096568 GGGCATATTC
86096578 GTCATTTTACCATACAAGGGTA-TTACG
1 GTCATTTTACCATAC-AGGG-ACTTACG
* *
86096605 GTCACTTTACCTTACAGGGACTTTACG
1 GTCATTTTACCATACAGGGAC-TTACG
*
86096632 GTCTTTTTACC
1 GTCATTTTACC
86096643 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
25 1 0.03
26 4 0.12
27 27 0.84
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCATACAGGGACTTACG
Found at i:86096726 original size:27 final size:27
Alignment explanation
Indices: 86096700--86096829 Score: 93
Period size: 27 Copynumber: 4.7 Consensus size: 27
86096690 ATCTACAAAC
*
86096700 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
86096727 CAATGGTATTTCTA-TAATTTT-TAAAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
* **
86096756 GAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* * ** **
86096783 GAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
**
86096810 TGAGGGTATTTCAGTAATTT
1 CAAGGGTATTTCAGTAATTT
86096830 CACAAACCAG
Statistics
Matches: 82, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
26 1 0.01
27 57 0.70
28 7 0.09
29 16 0.20
30 1 0.01
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:86096801 original size:56 final size:55
Alignment explanation
Indices: 86096701--86096829 Score: 145
Period size: 56 Copynumber: 2.3 Consensus size: 55
86096691 TCTACAAACC
*
86096701 AAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTTTAAAAAGTG
1 AAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAA-TTTTAAAAAGTG
** ** * * * *
86096757 AAGGGTATTTTTGTAATTTTGTAAATGAGGGGTATTT-TGGTAATTTTACAAATTG
1 AAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCT-ATAATTTTAAAAAGTG
86096812 -AGGGTATTTCAGTAATTT
1 AAGGGTATTTCAGTAATTT
86096830 CACAAACCAG
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
54 16 0.26
55 11 0.18
56 34 0.56
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (55 bp):
AAGGGTATTTCAGTAATTTTGTAAACCAAGGGTATTTCTATAATTTTAAAAAGTG
Found at i:86096871 original size:54 final size:54
Alignment explanation
Indices: 86096693--86096874 Score: 186
Period size: 54 Copynumber: 3.3 Consensus size: 54
86096683 TTGGTAAATC
* *
86096693 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTT
1 TACAAACTAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTT-TGATAA-TTT
* * ** ** * *
86096748 TAAAAAGTGAAGGGTATTTTTGTAATTTTGTAAATGAGGGGTATTTTGGTAATTT
1 TACAAACT-AAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGATAATTT
* * ***
86096803 TACAAATTGAGGGTATTTCAGTAATTTCACAAACCAGTGGTATTTTGATAATTT
1 TACAAACTAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGATAATTT
*
86096857 TACAAACTAGGGGTATTT
1 TACAAACTAAGGGTATTT
86096875 TGGTAATTCT
Statistics
Matches: 100, Mismatches: 25, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
54 51 0.51
55 15 0.15
56 34 0.34
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (54 bp):
TACAAACTAAGGGTATTTCAGTAATTTTGTAAACCAGTGGTATTTTGATAATTT
Found at i:86096875 original size:27 final size:26
Alignment explanation
Indices: 86096759--86096882 Score: 99
Period size: 27 Copynumber: 4.6 Consensus size: 26
86096749 AAAAAGTGAA
**
86096759 GGGTATTTTTG-TAATTTTGTAAATGAG
1 GGGTA-TTTTGATAATTTTACAAAT-AG
* *
86096786 GGGTATTTTGGTAATTTTACAAATTG
1 GGGTATTTTGATAATTTTACAAATAG
* * *
86096812 AGGGTA-TTTCAGTAATTTCACAAACCAG
1 -GGGTATTTTGA-TAATTTTACAAA-TAG
*
86096840 TGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGATAATTTTACAAA-TAG
*
86096867 GGGTATTTTGGTAATT
1 GGGTATTTTGATAATT
86096883 CTATCCTATA
Statistics
Matches: 78, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
26 9 0.12
27 64 0.82
28 5 0.06
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (26 bp):
GGGTATTTTGATAATTTTACAAATAG
Found at i:86096951 original size:27 final size:27
Alignment explanation
Indices: 86096914--86097111 Score: 263
Period size: 27 Copynumber: 7.3 Consensus size: 27
86096904 GTAATTTCAC
* *
86096914 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
86096941 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
*
86096968 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
86096995 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
86097022 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * * * *
86097049 AATTGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
**
86097076 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTGTA
86097103 AATCGAGGG
1 AATCGAGGG
86097112 CATTTCAGTA
Statistics
Matches: 151, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:86097030 original size:81 final size:81
Alignment explanation
Indices: 86096914--86097111 Score: 308
Period size: 81 Copynumber: 2.4 Consensus size: 81
86096904 GTAATTTCAC
* * *
86096914 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
* *
86096978 AAAACGGTAATTCTGTA
65 AAAACGATAATTCTATA
* *
86096995 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATTGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
86097060 AAACGATAATTCTATA
66 AAACGATAATTCTATA
*
86097076 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
86097112 CATTTCAGTA
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
81 107 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
AAACGATAATTCTATA
Found at i:86105065 original size:40 final size:40
Alignment explanation
Indices: 86105010--86105234 Score: 314
Period size: 40 Copynumber: 5.6 Consensus size: 40
86105000 TATTCAGATG
86105010 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
86105050 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
86105090 ATATCCGGGCGAAGTCCCGAAGGTATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
86105133 ATA-CTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATC-CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
86105173 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACT
*
86105213 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
86105235 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 9, Indels: 17
0.87 0.05 0.09
Matches are distributed among these distances:
39 16 0.10
40 112 0.67
41 4 0.02
42 1 0.01
43 33 0.20
44 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:86105162 original size:83 final size:81
Alignment explanation
Indices: 86105010--86105234 Score: 334
Period size: 83 Copynumber: 2.8 Consensus size: 81
86105000 TATTCAGATG
86105010 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--TAG-TGACTATATCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGATAGTTG-CTATAT-CGGGCTAAGTCCCGAAG
86105072 GCATTTGTGCTAGTGACT
64 GCATTTGTGCTAGTGACT
* *
86105090 ATATCCGGGCGAAGTCCCGAAGGTATTTGTGCGAGTAGTTGCTATACTCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-TAGTTGCTATA-TCGGGCTAAGTCCCGAAG
86105155 GCATTTGTGCTAGTGACT
64 GCATTTGTGCTAGTGACT
* * *
86105173 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-A-TTGCTATATCCGGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGATAGTTGCTATATCGGGCTAAGTCCCGAAGG
86105235 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
79 17 0.13
80 38 0.29
81 1 0.01
83 74 0.56
84 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGATAGTTGCTATATCGGGCTAAGTCCCGAAGGC
ATTTGTGCTAGTGACT
Found at i:86112699 original size:40 final size:40
Alignment explanation
Indices: 86112644--86112828 Score: 241
Period size: 40 Copynumber: 4.6 Consensus size: 40
86112634 TATTTGGATG
86112644 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTG-CT
*
86112684 ATATCCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--GTAG-TGCT
* *
86112727 ATACCCGGGCTACGTCCCGAAGGCATTTGTGC-TAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTG-CT
* * *
86112767 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTGCT
*
86112807 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
86112829 TACTTGGGTT
Statistics
Matches: 128, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
39 16 0.12
40 73 0.57
41 3 0.02
43 34 0.27
44 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTAGTGCT
Found at i:86112787 original size:83 final size:80
Alignment explanation
Indices: 86112648--86112828 Score: 283
Period size: 83 Copynumber: 2.2 Consensus size: 80
86112638 TGGATGATAT
*
86112648 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCAAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCAAAGACCCGAAGGCATTTG
86112713 TGCGAGTAGTTGCTATAC
66 TGCGA--A-TTGCTATAC
* *
86112731 CCGGGCTACGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCAAAGACCCGAAGGCATTTG
*
86112796 TGCGAATTGCTATAT
66 TGCGAATTGCTATAC
*
86112811 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
86112829 TACTTGGGTT
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
79 14 0.15
80 10 0.11
81 1 0.01
83 67 0.73
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCAAAGACCCGAAGGCATTTG
TGCGAATTGCTATAC
Found at i:86114198 original size:62 final size:62
Alignment explanation
Indices: 86114101--86114218 Score: 236
Period size: 62 Copynumber: 1.9 Consensus size: 62
86114091 GAAATTTTAA
86114101 AATGAACTGTGTAAATAAATGAATTAAGTTCGTTAACACCTCGTGTTCGACTCCGAGGTGTT
1 AATGAACTGTGTAAATAAATGAATTAAGTTCGTTAACACCTCGTGTTCGACTCCGAGGTGTT
86114163 AATGAACTGTGTAAATAAATGAATTAAGTTCGTTAACACCTCGTGTTCGACTCCGA
1 AATGAACTGTGTAAATAAATGAATTAAGTTCGTTAACACCTCGTGTTCGACTCCGA
86114219 CAACGGTCTC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Consensus pattern (62 bp):
AATGAACTGTGTAAATAAATGAATTAAGTTCGTTAACACCTCGTGTTCGACTCCGAGGTGTT
Found at i:86120011 original size:39 final size:40
Alignment explanation
Indices: 86119910--86120011 Score: 138
Period size: 40 Copynumber: 2.6 Consensus size: 40
86119900 TATTCGGATG
* *
86119910 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTGACT
*
86119950 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCGAATTG-CT
1 ATATCCGGGCTAA-ATCCCGAAGGCATTTGTGC-AAGTGACT
86119990 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGG
86120012 TACTTGGGTT
Statistics
Matches: 56, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
38 1 0.02
39 14 0.25
40 38 0.68
41 3 0.05
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCAAGTGACT
Found at i:86130145 original size:39 final size:39
Alignment explanation
Indices: 86130095--86130184 Score: 153
Period size: 39 Copynumber: 2.3 Consensus size: 39
86130085 ACCGAATTTG
*
86130095 TGATAAAAGTGTAAAACTCGTTAGGCAGGCATTTGATAAT
1 TGAT-AAAGTGTAAAACCCGTTAGGCAGGCATTTGATAAT
*
86130135 TGATAAAGTGTAAAACCCGTTAGGCAGGCATTTGATAGT
1 TGATAAAGTGTAAAACCCGTTAGGCAGGCATTTGATAAT
86130174 TGATAAAGTGT
1 TGATAAAGTGT
86130185 GTAGAGATTG
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
39 44 0.92
40 4 0.08
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.30
Consensus pattern (39 bp):
TGATAAAGTGTAAAACCCGTTAGGCAGGCATTTGATAAT
Found at i:86134037 original size:38 final size:38
Alignment explanation
Indices: 86133986--86134061 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
86133976 AGACATGTTT
*
86133986 ATTTCTGAAATTTTACAGAAAAATATGAGTTATGGTTG
1 ATTTCTAAAATTTTACAGAAAAATATGAGTTATGGTTG
**
86134024 ATTTCTAAAATTTTATGGAAAAATATGAGTTATGGTTG
1 ATTTCTAAAATTTTACAGAAAAATATGAGTTATGGTTG
86134062 TGAAATAAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.37, C:0.04, G:0.18, T:0.41
Consensus pattern (38 bp):
ATTTCTAAAATTTTACAGAAAAATATGAGTTATGGTTG
Found at i:86134791 original size:46 final size:46
Alignment explanation
Indices: 86134685--86134900 Score: 170
Period size: 46 Copynumber: 4.6 Consensus size: 46
86134675 TAAGAGACAA
* * * * * *
86134685 TGTAAGACCATGTCTGGGACATGGCAT-TGGCATTGAGACGAAAGCTAG
1 TGTAAGA-CATGTTTGGGACAT-GCATCGGGC-TCGAGATGTAAGCCAG
86134733 TGTAAGACATGTTTGGGACATGCATCGGGCTCGAGATGTAAGCCAG
1 TGTAAGACATGTTTGGGACATGCATCGGGCTCGAGATGTAAGCCAG
* * * *
86134779 TGTGAGACATGTTTGGGACATGCAT-TGGCTATGAGATGT--GTCAG
1 TGTAAGACATGTTTGGGACATGCATCGGGCT-CGAGATGTAAGCCAG
* ** ** *
86134823 TGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATTTCAATAGTCAG
1 TGTAAGA-CATGTTTGGGACAT-GCATCGGGCTCGAGATGTA-AGCCAG
*
86134872 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGA-CATGTTTGGGACAT-GCATCG
86134901 AGTTGATGGA
Statistics
Matches: 141, Mismatches: 19, Indels: 15
0.81 0.11 0.09
Matches are distributed among these distances:
44 10 0.07
45 18 0.13
46 54 0.38
47 19 0.13
48 7 0.05
49 33 0.23
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.26
Consensus pattern (46 bp):
TGTAAGACATGTTTGGGACATGCATCGGGCTCGAGATGTAAGCCAG
Found at i:86147894 original size:23 final size:23
Alignment explanation
Indices: 86147864--86147909 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
86147854 GACAAGTTAG
86147864 TGTTGGGTTTAAACACTAGTGAT
1 TGTTGGGTTTAAACACTAGTGAT
86147887 TGTTGGGTTTAAACACTAGTGAT
1 TGTTGGGTTTAAACACTAGTGAT
86147910 GGAGAGTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.39
Consensus pattern (23 bp):
TGTTGGGTTTAAACACTAGTGAT
Found at i:86149796 original size:22 final size:22
Alignment explanation
Indices: 86149771--86149813 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
86149761 CTGTGATATT
*
86149771 TATGGCCTTTAGCCGTTCTGTC
1 TATGGCCTTGAGCCGTTCTGTC
* *
86149793 TATGGCGTTGAGCTGTTCTGT
1 TATGGCCTTGAGCCGTTCTGT
86149814 TGACTTAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.09, C:0.21, G:0.28, T:0.42
Consensus pattern (22 bp):
TATGGCCTTGAGCCGTTCTGTC
Found at i:86151409 original size:43 final size:42
Alignment explanation
Indices: 86151361--86151508 Score: 156
Period size: 44 Copynumber: 3.5 Consensus size: 42
86151351 TTTGGATATG
86151361 TGATTTCATGTAAGACCACGTCTGGGACATTGGCATC-AACTT
1 TGATTTCATGTAAGACCACGTCTGGGACATTGGCATCGAA-TT
* * * *
86151403 ATGATTTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATT
1 -TGATTT-CATGTAAGACCACGTCTGGGACATTGGCATCGAATT
* * * *
86151447 TGATTTCGTGTAAGACC-CTGTCTGGGATAGTGACATCGATATT
1 TGATTTCATGTAAGACCAC-GTCTGGGACATTGGCATCGA-ATT
*
86151490 TGATTACATGTAAGACCAC
1 TGATTTCATGTAAGACCAC
86151509 ATATGAGACG
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
42 26 0.30
43 30 0.34
44 31 0.35
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (42 bp):
TGATTTCATGTAAGACCACGTCTGGGACATTGGCATCGAATT
Found at i:86151418 original size:44 final size:42
Alignment explanation
Indices: 86151361--86151508 Score: 149
Period size: 43 Copynumber: 3.5 Consensus size: 42
86151351 TTTGGATATG
* *
86151361 TGATTTCATGTAAGACCACGTCTGGGACATTGGCATC-AACTT
1 TGATTTCGTGTAAGACCACGTCTGGGACATCGGCATCGAA-TT
* *
86151403 ATGATTTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATT
1 -TGATTT-CGTGTAAGACCACGTCTGGGACATCGGCATCGAATT
* *
86151447 TGATTTCGTGTAAGACC-CTGTCTGGGATAGT-GACATCGATATT
1 TGATTTCGTGTAAGACCAC-GTCTGGGACA-TCGGCATCGA-ATT
* *
86151490 TGATTACATGTAAGACCAC
1 TGATTTCGTGTAAGACCAC
86151509 ATATGAGACG
Statistics
Matches: 89, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
42 26 0.29
43 31 0.35
44 31 0.35
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCACGTCTGGGACATCGGCATCGAATT
Found at i:86155334 original size:37 final size:37
Alignment explanation
Indices: 86155293--86155372 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
86155283 GTTTTCAAAG
* *
86155293 ATAGATTTGAGATTGGGCTATTATCAGTTGAGAGTAA
1 ATAGATTTGAGATCGGGCTATTATAAGTTGAGAGTAA
86155330 ATAGATTTGAGATCGGGCTATTATAAGTTGAGAGTAA
1 ATAGATTTGAGATCGGGCTATTATAAGTTGAGAGTAA
86155367 A-AGATT
1 ATAGATT
86155373 CAGACATTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
36 5 0.12
37 36 0.88
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.34
Consensus pattern (37 bp):
ATAGATTTGAGATCGGGCTATTATAAGTTGAGAGTAA
Found at i:86159078 original size:42 final size:43
Alignment explanation
Indices: 86159023--86159151 Score: 158
Period size: 42 Copynumber: 3.0 Consensus size: 43
86159013 CATAGGATTT
*
86159023 TCGATATGTGATTTCATGTAAGACCACGTCTAGGACA-TCGGCA
1 TCGATATTTGATTTCATGTAAGACCACGTCTAGGACAGT-GGCA
*
86159066 TCGA-ATTTGATTTCGTGTAAGACC-CTGTCTAGGACAGTGGCA
1 TCGATATTTGATTTCATGTAAGACCAC-GTCTAGGACAGTGGCA
* * *
86159108 TCGATATTTGATTACATGTAAGTCCACGTCTGGGAC-GTTGGCA
1 TCGATATTTGATTTCATGTAAGACCACGTCTAGGACAG-TGGCA
86159151 T
1 T
86159152 TGTATGAGCT
Statistics
Matches: 75, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
41 1 0.01
42 37 0.49
43 36 0.48
44 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
TCGATATTTGATTTCATGTAAGACCACGTCTAGGACAGTGGCA
Found at i:86162874 original size:24 final size:25
Alignment explanation
Indices: 86162840--86162886 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
86162830 AATTAACATG
*
86162840 TAAAAATTAAATTAAAACAAAAATA
1 TAAAAATTAAAATAAAACAAAAATA
*
86162865 TAAAAA-TAAAATAAAATAAAAA
1 TAAAAATTAAAATAAAACAAAAA
86162887 GGGGTAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (25 bp):
TAAAAATTAAAATAAAACAAAAATA
Found at i:86167465 original size:13 final size:13
Alignment explanation
Indices: 86167447--86167473 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86167437 AGAGTAATCG
86167447 CACACGGGCATGT
1 CACACGGGCATGT
86167460 CACACGGGCATGT
1 CACACGGGCATGT
86167473 C
1 C
86167474 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (13 bp):
CACACGGGCATGT
Found at i:86172955 original size:26 final size:26
Alignment explanation
Indices: 86172926--86173033 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
86172916 TGGTACAAAT
86172926 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
86172952 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86172978 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
86173004 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86173030 TGAT
1 TGAT
86173034 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86174506 original size:27 final size:26
Alignment explanation
Indices: 86174475--86174549 Score: 69
Period size: 28 Copynumber: 2.8 Consensus size: 26
86174465 AAAAGCAGCT
*
86174475 AAATTACTATAATACCCCTATGTATGA
1 AAATTACTATAATACCCCTAGGTAT-A
* * *
86174502 AAATTTACTGTTATACCCCTAGGTGTA
1 AAA-TTACTATAATACCCCTAGGTATA
** *
86174529 AAATTACCGTTATACCCCTAG
1 AAATTACTATAATACCCCTAG
86174550 TGTTAATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 17 0.40
27 7 0.17
28 18 0.43
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (26 bp):
AAATTACTATAATACCCCTAGGTATA
Found at i:86174541 original size:26 final size:28
Alignment explanation
Indices: 86174486--86174549 Score: 87
Period size: 26 Copynumber: 2.4 Consensus size: 28
86174476 AATTACTATA
* *
86174486 ATACCCCTATGTATGAAAATTTACTGTT
1 ATACCCCTAGGTATGAAAATTTACCGTT
*
86174514 ATACCCCTAGGTGT-AAAA-TTACCGTT
1 ATACCCCTAGGTATGAAAATTTACCGTT
86174540 ATACCCCTAG
1 ATACCCCTAG
86174550 TGTTAATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 17 0.52
27 4 0.12
28 12 0.36
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.33
Consensus pattern (28 bp):
ATACCCCTAGGTATGAAAATTTACCGTT
Found at i:86174736 original size:54 final size:54
Alignment explanation
Indices: 86174654--86175550 Score: 1726
Period size: 54 Copynumber: 16.6 Consensus size: 54
86174644 AGGAAGCGTC
*
86174654 CTGGTGGCTATGCCGA-AATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCC-ACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86174708 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86174762 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86174816 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86174870 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86174924 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86174978 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86175032 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86175086 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86175140 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86175194 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86175248 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86175302 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86175356 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86175410 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
86175464 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
86175518 CTGGTGGCTCTGCCAC-AATATCTATATCTGGTG
1 CTGGTGGCTATGCCACGATTATCT-GATCTGGTG
86175551 ACTTCGTCAC
Statistics
Matches: 837, Mismatches: 4, Indels: 4
0.99 0.00 0.00
Matches are distributed among these distances:
53 7 0.01
54 830 0.99
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:86188187 original size:27 final size:27
Alignment explanation
Indices: 86188147--86188238 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
86188137 AGGAAGCGTC
*
86188147 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
86188174 CTGGTGGCTCTGCCAC-ATATATCT-ATT
1 CTGGTGGCTCTGCCACAAT-TATCTGA-T
* *
86188201 CTGGTGGCTCTGCCATAATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
86188228 CTGGTGACTCT
1 CTGGTGGCTCT
86188239 ATCTCATTAT
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
26 3 0.05
27 52 0.91
28 2 0.04
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:86188254 original size:26 final size:26
Alignment explanation
Indices: 86188147--86188257 Score: 114
Period size: 27 Copynumber: 4.2 Consensus size: 26
86188137 AGGAAGCGTC
* * *
86188147 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCTC-ATTATCTGTT
* *
86188174 CTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTCTGCCTCAT-TATCTGTT
*
86188201 CTGGTGGCTCTGCCATAATTATCTGTT
1 CTGGTGGCTCTGCC-TCATTATCTGTT
* **
86188228 CTGGTGACTCTATCTCATTATCTGTT
1 CTGGTGGCTCTGCCTCATTATCTGTT
86188254 CTGG
1 CTGG
86188258 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 17 0.24
27 53 0.74
28 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCTCATTATCTGTT
Found at i:86196101 original size:27 final size:26
Alignment explanation
Indices: 86196059--86196169 Score: 132
Period size: 27 Copynumber: 4.2 Consensus size: 26
86196049 AGGAAGCGTC
* * *
86196059 CTGGTGGCTATCCCACAAGTATCTGAT
1 CTGGTGGCTCTGCCACAA-TATCTGTT
86196086 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGTT
86196113 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACAA-TATCTGTT
* ** *
86196140 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTGCCACAATATCTGTT
86196166 CTGG
1 CTGG
86196170 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 13 0.17
27 61 0.81
28 1 0.01
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGTT
Found at i:86196143 original size:54 final size:53
Alignment explanation
Indices: 86196059--86196169 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
86196049 AGGAAGCGTC
* *
86196059 CTGGTGGCTATCCCACAAGTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATCCCACAAGTATCTGATCTGGTGACTCTACCACAT-TATCTGTT
* * * * *
86196113 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTATCCCACAAGTATCTGATCTGGTGACTCTACCACATTATCTGTT
86196166 CTGG
1 CTGG
86196170 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 12 0.24
54 38 0.76
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATCCCACAAGTATCTGATCTGGTGACTCTACCACATTATCTGTT
Found at i:86201498 original size:46 final size:45
Alignment explanation
Indices: 86201448--86201623 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 45
86201438 TGTTTGGGCA
* *
86201448 TCCGAATTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-GAAG
*** * *
86201494 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
86201541 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-CTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-GAA-G
* *
86201587 -CCTGAGCTAGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86201624 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
44 3 0.03
45 3 0.03
46 65 0.61
47 32 0.30
48 2 0.02
49 1 0.01
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:86201603 original size:93 final size:93
Alignment explanation
Indices: 86201444--86201615 Score: 258
Period size: 93 Copynumber: 1.8 Consensus size: 93
86201434 AGGATGTTTG
* * * *
86201444 GGCATCCGAATTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTAGTTGAG
86201509 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
86201537 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-CTGAACG-CCTGAGCTAGTTG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-GAACGTCC-GAACTAGTTG
86201600 AGTTGAGTCCGAGTTC
64 AGTTGAGTCCGAGTTC
86201616 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
92 3 0.04
93 68 0.96
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTAGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:86208519 original size:27 final size:27
Alignment explanation
Indices: 86208489--86208666 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86208479 ATATTGAGTC
* * * *
86208489 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
86208516 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86208543 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
86208571 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
86208598 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
86208625 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86208652 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86208667 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:86208628 original size:82 final size:81
Alignment explanation
Indices: 86208510--86208665 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86208500 TGCTATATAA
* *
86208510 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
86208575 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
86208592 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
86208656 CACTTAGTGC
65 CACTTAGTGC
86208666 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:86216582 original size:27 final size:27
Alignment explanation
Indices: 86216552--86216729 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86216542 ATATTGAGTC
* * * *
86216552 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
86216579 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86216606 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
86216634 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
86216661 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
86216688 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86216715 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86216730 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:86216691 original size:82 final size:81
Alignment explanation
Indices: 86216573--86216728 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86216563 TGCTATATAA
* *
86216573 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
86216638 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
86216655 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
86216719 CACTTAGTGC
65 CACTTAGTGC
86216729 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:86238552 original size:42 final size:43
Alignment explanation
Indices: 86238445--86238585 Score: 122
Period size: 42 Copynumber: 3.3 Consensus size: 43
86238435 TATGTGTTAT
** * * * * **
86238445 CGTGTAAGACCGCGTCTGGGACATTGGTATGGATTTGTGATTTA
1 CGTGTAAGACCATGTCTGGGACAGTGGCATCGATATAAGA-TTA
* * *
86238489 CTTGTAAGACCATGTCTGGGACATTGGCATCG-TATAAGATTT
1 CGTGTAAGACCATGTCTGGGACAGTGGCATCGATATAAGATTA
* * * **
86238531 CGTGTAATACCCTGTTTGGGACAGTGGCATCGATATTTGATTA
1 CGTGTAAGACCATGTCTGGGACAGTGGCATCGATATAAGATTA
86238574 CGTGTAAGACCA
1 CGTGTAAGACCA
86238586 CGTATGGTGT
Statistics
Matches: 77, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
42 29 0.38
43 21 0.27
44 27 0.35
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACAGTGGCATCGATATAAGATTA
Found at i:86239592 original size:24 final size:25
Alignment explanation
Indices: 86239552--86239660 Score: 116
Period size: 25 Copynumber: 4.4 Consensus size: 25
86239542 CTGGAGGCCT
*
86239552 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
86239576 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* * *
86239601 AGCCCTTTTAAGAAACTGAGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* * *
86239626 AGCCATTTTCGGTAAACTGGGGC-AT
1 AGCCCTTTT-GATAAACTGGGGCAAA
86239651 AGCCCTTTTG
1 AGCCCTTTTG
86239661 CACTTCCTCC
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
23 7 0.10
24 14 0.20
25 41 0.58
26 9 0.13
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:86239729 original size:20 final size:20
Alignment explanation
Indices: 86239706--86239752 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
86239696 TTATGAATAC
86239706 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
86239725 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
86239746 ATCATGT
1 ATCATGT
86239753 ATATCAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:86242897 original size:47 final size:46
Alignment explanation
Indices: 86242670--86242915 Score: 172
Period size: 47 Copynumber: 5.2 Consensus size: 46
86242660 CATAATAAAA
* * * *
86242670 CTATGGTCTTGCACATAGTCACATATCATACACCGAAGCCATAGCCCAG
1 CTATGGTCTTACACAAAG-CACATATC--ACACTGATGCCATAGCCCAG
* * * *
86242719 CCATGGTCTTACACAGATCACATATCACACTGATGCCATATCCCAG
1 CTATGGTCTTACACAAAGCACATATCACACTGATGCCATAGCCCAG
* * * * * *
86242765 ATATGGTCTTACACAGAAGCAAAAATCAC-GTCGATGCCATATCCTAG
1 CTATGGTCTTACACA-AAGCACATATCACACT-GATGCCATAGCCCAG
* * * * **
86242812 ATATGGTCTTATACGGAAGCTCATATCACACCAATGCCATAGCCCAG
1 CTATGGTCTTACAC-AAAGCACATATCACACTGATGCCATAGCCCAG
* * * * *
86242859 CTATGGTCTTATACGAAAATCACATATCACA-TGTTGCCATGGCCCAA
1 CTATGGTCTTACAC--AAAGCACATATCACACTGATGCCATAGCCCAG
*
86242906 CCATGGTCTT
1 CTATGGTCTT
86242916 TTCTGTCAAT
Statistics
Matches: 156, Mismatches: 36, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
46 31 0.20
47 91 0.58
48 20 0.13
49 14 0.09
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (46 bp):
CTATGGTCTTACACAAAGCACATATCACACTGATGCCATAGCCCAG
Found at i:86250327 original size:397 final size:398
Alignment explanation
Indices: 86249591--86250390 Score: 1289
Period size: 397 Copynumber: 2.0 Consensus size: 398
86249581 CCGAGGTATG
* * *
86249591 TTGGACCATATGAGGTTTTAGAACGTATCGAGCCGGTTGCTTACAGATTATTGTTTCCACCTGAG
1 TTGGACCATATAAGGTTATAGAACGTATCGAGCCGGTTGCTTACAGATTATTGTTGCCACCTGAG
** * * * *
86249656 TTAGAAAAGATACACAAAGTATTCCATGTTTCGATGCTTCGGAGGTATTGCTCTGATCTTTCACA
66 TTAGAAAAGATACACAAAGTATTCCACATTTCAATGCTTCGAAGGTATTGATCTGATCCTTCACA
* *
86249721 TGTGATTAGTCTATCTGAGATTGAAATTCAACCTGATATGACCTACGAAGAAGAACCGATTCGCA
131 TGTGATTAGTCCATCTGAAATTGAAATTCAACCTGATATGACCTACGAAGAAGAACCGATTCGCA
* **
86249786 TTTTGACTCGTGAGGTTAAAGAGTTGCGGACTAAAAAGATTACGTTAGTTAAAGTATTGTAGCAT
196 TTTTGACTCGTGAGGTTAAAGAGTTGCAGAAGAAAAAGATTACGTTAGTTAAAGTATTGTAGCAT
* * *
86249851 AAGCATGGAGTTGAGGAAGCAACATGGGAGTCAGAGGATACAATGAAAGAACATCATCTAAACCT
261 AAGCATAGAGTTGAGGAAGAAACATGGGAGCCAGAGGATACAATGAAAGAACATCATCTAAACCT
*
86249916 ATTCATCGGTAAGATTTTC-GGGACAAAAATCAC-TAAAGGGAGAGAGTTGTAACAGCCCGATTT
326 ATTCACCGGTAAGATTTTCGGGGACAAAAATC-CTTAAAGGGAGAGAGTTGTAACAGCCCGATTT
86249979 AGACCCTAA
390 AGACCCTAA
*
86249988 TTGGACCATATAAGGTTATAGAACGTATCGAGCCGGTTGCTTACAGATTGTTGTTGCCACCTGAG
1 TTGGACCATATAAGGTTATAGAACGTATCGAGCCGGTTGCTTACAGATTATTGTTGCCACCTGAG
* *
86250053 TTAGAAAAGATACACAATGTATTCCACATTTCAATGCTTCGAAGGTATTGATTTGATCCTTCACA
66 TTAGAAAAGATACACAAAGTATTCCACATTTCAATGCTTCGAAGGTATTGATCTGATCCTTCACA
* * *
86250118 TGTGATTAGTCCGTCTGAAATTGAAATTCAGCCTGATATGACCTATGAAGAAGAACCGATTCGCA
131 TGTGATTAGTCCATCTGAAATTGAAATTCAACCTGATATGACCTACGAAGAAGAACCGATTCGCA
* *
86250183 TTTTGACTCGTGAGGTTAAAGAGTTGCAGAAGAAGAAGATTTCGTTAGTTAAAGTATTGTAGCAT
196 TTTTGACTCGTGAGGTTAAAGAGTTGCAGAAGAAAAAGATTACGTTAGTTAAAGTATTGTAGCAT
*
86250248 AAGCATAGAGTTGAGGAAGAAACATGGGAGCCAGAGGATACAATGAAAGAACATCATCTGAACCT
261 AAGCATAGAGTTGAGGAAGAAACATGGGAGCCAGAGGATACAATGAAAGAACATCATCTAAACCT
* * * * *
86250313 ATTCACCTGTAAGATTTTCGGGGACGAAAATCCTTAATGGGGGAGAGTTGTAACAGCCTGATTTA
326 ATTCACCGGTAAGATTTTCGGGGACAAAAATCCTTAAAGGGAGAGAGTTGTAACAGCCCGATTTA
86250378 GACCCTAA
391 GACCCTAA
86250386 TTGGA
1 TTGGA
86250391 ACTGTGGTTT
Statistics
Matches: 369, Mismatches: 32, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
397 317 0.86
398 52 0.14
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (398 bp):
TTGGACCATATAAGGTTATAGAACGTATCGAGCCGGTTGCTTACAGATTATTGTTGCCACCTGAG
TTAGAAAAGATACACAAAGTATTCCACATTTCAATGCTTCGAAGGTATTGATCTGATCCTTCACA
TGTGATTAGTCCATCTGAAATTGAAATTCAACCTGATATGACCTACGAAGAAGAACCGATTCGCA
TTTTGACTCGTGAGGTTAAAGAGTTGCAGAAGAAAAAGATTACGTTAGTTAAAGTATTGTAGCAT
AAGCATAGAGTTGAGGAAGAAACATGGGAGCCAGAGGATACAATGAAAGAACATCATCTAAACCT
ATTCACCGGTAAGATTTTCGGGGACAAAAATCCTTAAAGGGAGAGAGTTGTAACAGCCCGATTTA
GACCCTAA
Found at i:86255330 original size:16 final size:16
Alignment explanation
Indices: 86255289--86255324 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
86255279 ATATATATAT
86255289 CACAAATCATTTTCAC
1 CACAAATCATTTTCAC
86255305 CACAAATCATTTTCAC
1 CACAAATCATTTTCAC
86255321 CACA
1 CACA
86255325 TTTCATACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.33, G:0.00, T:0.28
Consensus pattern (16 bp):
CACAAATCATTTTCAC
Found at i:86257517 original size:60 final size:59
Alignment explanation
Indices: 86257451--86257568 Score: 200
Period size: 60 Copynumber: 2.0 Consensus size: 59
86257441 AAAAATGGTC
*
86257451 AGCATGTCATAAAACGTAAGAAAATAGGATGAAGTTGAATTTCCGAACCTTGGGGAAAG
1 AGCATGTCATAAAACATAAGAAAATAGGATGAAGTTGAATTTCCGAACCTTGGGGAAAG
* *
86257510 ANGCATGTCATAAAACATAAGAAAATAGGATGAAGTTTAATTTCTGAACCTTGGGGAAA
1 A-GCATGTCATAAAACATAAGAAAATAGGATGAAGTTGAATTTCCGAACCTTGGGGAAA
86257569 AAGTGCAAAT
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
59 1 0.02
60 54 0.98
ACGTcount: A:0.42, C:0.11, G:0.23, T:0.24
Consensus pattern (59 bp):
AGCATGTCATAAAACATAAGAAAATAGGATGAAGTTGAATTTCCGAACCTTGGGGAAAG
Found at i:86258296 original size:51 final size:49
Alignment explanation
Indices: 86258220--86258407 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
86258210 TGAGGTCGCA
*
86258220 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA-TT-GATCACG
* ** * ** *
86258271 TGTGTAGTACTAAGTGCAGACTACTATGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAATT-GATCACG
* ** ** *
86258321 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAATTGATCACG
*
86258370 TGTGTTGTACTAAGTGCA-GCTACTATGCATACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATA
86258408 GCTTTGGCTA
Statistics
Matches: 115, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
48 17 0.15
49 20 0.17
50 45 0.39
51 33 0.29
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAATTGATCACG
Found at i:86258425 original size:101 final size:101
Alignment explanation
Indices: 86258220--86258411 Score: 237
Period size: 101 Copynumber: 1.9 Consensus size: 101
86258210 TGAGGTCGCA
* * *
86258220 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAACTTCGATCACATGTGTAGTACTAAG
** * * *
86258285 TGCAGACTACTATGTGTATCAGATGGTTAGGTCACG
66 TGCAGACTACTATGCATACCAGATGCTTAGGTCAAG
** ** *
86258321 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GATTGCATGTGTTGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAACTTCGATCACATGTGTAGTACTAAG
86258384 TGCAG-CTACTATGCATACCAGATAGCTT
66 TGCAGACTACTATGCATACCAGAT-GCTT
86258412 TGGCTATAAG
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
98 15 0.19
99 25 0.32
100 2 0.03
101 36 0.46
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCATACCAGATAACTTCGATCACATGTGTAGTACTAAG
TGCAGACTACTATGCATACCAGATGCTTAGGTCAAG
Found at i:86258731 original size:29 final size:30
Alignment explanation
Indices: 86258675--86258732 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
86258665 GTGAATTTGA
*
86258675 AAATTTACAAAAAATTATGTAAGTTAAATT
1 AAATTTACAAAAAATTATGTAAATTAAATT
86258705 AAATTT-CAAATAAATTATG-AAATTAAAT
1 AAATTTACAAA-AAATTATGTAAATTAAAT
86258733 CTTAATGAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.36
Consensus pattern (30 bp):
AAATTTACAAAAAATTATGTAAATTAAATT
Found at i:86261153 original size:15 final size:16
Alignment explanation
Indices: 86261135--86261168 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
86261125 TCTCGTATCA
86261135 TGGATTTCTTTATT-T
1 TGGATTTCTTTATTCT
86261150 TGGATTTCTTTATTCT
1 TGGATTTCTTTATTCT
86261166 TGG
1 TGG
86261169 CTTCTCTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.12, C:0.09, G:0.18, T:0.62
Consensus pattern (16 bp):
TGGATTTCTTTATTCT
Found at i:86267546 original size:30 final size:30
Alignment explanation
Indices: 86267494--86267590 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
86267484 TTATAGAGCA
86267494 AAGATAAGAAGAAAACC-GAATAAAGAAATCC
1 AAGAT-AG-AGAAAACCAGAATAAAGAAATCC
*
86267525 AAGATAGAGAAACCCAGAATAAAGAAATCC
1 AAGATAGAGAAAACCAGAATAAAGAAATCC
* * * * *
86267555 -AGAATAAAGAGATCCAGGATAAAGAAACCC
1 AAG-ATAGAGAAAACCAGAATAAAGAAATCC
86267585 AAGATA
1 AAGATA
86267591 CGATACTATG
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
29 9 0.16
30 41 0.72
31 7 0.12
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGATAGAGAAAACCAGAATAAAGAAATCC
Found at i:86267550 original size:15 final size:15
Alignment explanation
Indices: 86267502--86267581 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
86267492 CAAAGATAAG
*
86267502 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
86267516 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
86267531 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
86267546 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
86267561 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
86267576 AAGAAA
1 AAGAAA
86267582 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:86267590 original size:15 final size:15
Alignment explanation
Indices: 86267513--86267590 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
86267503 AGAAAACCGA
86267513 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
86267528 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
86267542 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
86267557 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
86267573 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
86267588 ATA
1 ATA
86267591 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:86270603 original size:47 final size:47
Alignment explanation
Indices: 86270472--86270626 Score: 188
Period size: 47 Copynumber: 3.3 Consensus size: 47
86270462 ATAGTAAAAT
* * * *
86270472 TATGGTCTTACACA-TAGTCACATATCACATACCGAGGCCATAGCCCAGC
1 TATGGTCTTATACAGTA-TCACATATCAC--ACCGATGCCATATCCCAGA
* * *
86270521 CATGGTCTTATAC-GGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTATACAGTATCACATATCACACCGATGCCATATCCCAGA
* *
86270567 TATAGTCTTATACAGTATCACATATCACACCGATGCCATATCCCGGA
1 TATGGTCTTATACAGTATCACATATCACACCGATGCCATATCCCAGA
86270614 TATGGTCTTATAC
1 TATGGTCTTATAC
86270627 GGAAGCGCAA
Statistics
Matches: 91, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
46 26 0.29
47 42 0.46
48 11 0.12
49 12 0.13
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (47 bp):
TATGGTCTTATACAGTATCACATATCACACCGATGCCATATCCCAGA
Found at i:86272149 original size:28 final size:28
Alignment explanation
Indices: 86272117--86272200 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
86272107 AACTTCGATC
*
86272117 ACGTGTGTAGTACTAAGTGGAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
86272145 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
86272167 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
86272195 ACGTGT
1 ACGTGT
86272201 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:86272191 original size:50 final size:49
Alignment explanation
Indices: 86272115--86272244 Score: 188
Period size: 50 Copynumber: 2.6 Consensus size: 49
86272105 ATAACTTCGA
* * **
86272115 TCACGTGTGTAGTACTAAGTGGAGGCTACTACGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GG
*
86272165 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGG
* *
86272214 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
86272245 TGCATACTAG
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
49 31 0.42
50 42 0.58
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (49 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGG
Found at i:86280119 original size:55 final size:55
Alignment explanation
Indices: 86280058--86280168 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
86280048 ACTCAAAACC
86280058 AAATCCTGAAAGATTTGGTTGCAGTTTCATAGAAGTTCATTAATATCTTCTTTTT
1 AAATCCTGAAAGATTTGGTTGCAGTTTCATAGAAGTTCATTAATATCTTCTTTTT
*
86280113 AAATCCTGAAAGATTTGGTTGCAGTTTCATAGAAGTTCATTAATATTTTCTTTTT
1 AAATCCTGAAAGATTTGGTTGCAGTTTCATAGAAGTTCATTAATATCTTCTTTTT
86280168 A
1 A
86280169 TAAAGAAAAT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (55 bp):
AAATCCTGAAAGATTTGGTTGCAGTTTCATAGAAGTTCATTAATATCTTCTTTTT
Found at i:86283318 original size:13 final size:13
Alignment explanation
Indices: 86283302--86283334 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
86283292 TTTAATTAAA
*
86283302 TTAGTTAATTAGT
1 TTAGATAATTAGT
86283315 TTAGATAATTAGT
1 TTAGATAATTAGT
86283328 TTA-ATAA
1 TTAGATAA
86283335 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:86288760 original size:14 final size:13
Alignment explanation
Indices: 86288741--86288823 Score: 60
Period size: 14 Copynumber: 5.8 Consensus size: 13
86288731 TCCTCCTATC
86288741 TTTTTATTCTTATT
1 TTTTTATT-TTATT
86288755 TTTTTA-TTTATTT
1 TTTTTATTTTA-TT
86288768 TATTTTATTTTTATT
1 T-TTTTA-TTTTATT
*
86288783 TTTTTATTACTATT
1 TTTTTATT-TTATT
86288797 TTCATTTCAATTTTATT
1 TT--TTT--ATTTTATT
*
86288814 ATTTTATTTT
1 TTTTTATTTT
86288824 GAAAGACATA
Statistics
Matches: 57, Mismatches: 3, Indels: 19
0.72 0.04 0.24
Matches are distributed among these distances:
12 3 0.05
13 11 0.19
14 22 0.39
15 6 0.11
16 7 0.12
17 5 0.09
18 3 0.05
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTATTTTATT
Found at i:86288771 original size:5 final size:5
Alignment explanation
Indices: 86288742--86288823 Score: 52
Period size: 5 Copynumber: 16.8 Consensus size: 5
86288732 CCTCCTATCT
86288742 TTTTA TTCTTA -TTT- TTTTA -TTTA TTTTA TTTTA TTTT- TATTT- TTTTA
1 TTTTA TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA TTTTA
* *
86288789 TTACTA TTTTCA TTTCAA TTTTA --TTA TTTTA TTTT
1 TT-TTA TTTT-A TTT-TA TTTTA TTTTA TTTTA TTTT
86288824 GAAAGACATA
Statistics
Matches: 62, Mismatches: 4, Indels: 22
0.70 0.05 0.25
Matches are distributed among these distances:
3 3 0.05
4 13 0.21
5 31 0.50
6 15 0.24
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:86288780 original size:20 final size:21
Alignment explanation
Indices: 86288755--86288814 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
86288745 TATTCTTATT
*
86288755 TTTTTATTTATTTTATT-TTA
1 TTTTTATTTATTTTATTACTA
86288775 TTTTTATTT-TTTTATTACTA
1 TTTTTATTTATTTTATTACTA
*
86288795 TTTTCATTTCAATTTTATTA
1 TTTTTATTT--ATTTTATTA
86288815 TTTTATTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 7 0.21
20 19 0.56
23 8 0.24
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTTTATTTATTTTATTACTA
Found at i:86288781 original size:6 final size:6
Alignment explanation
Indices: 86288741--86288785 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
86288731 TCCTCCTATC
*
86288741 TTTTTA TTCTTA TTTTT- TTATTTA -TTTTA -TTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTT
86288786 TTATTACTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
5 11 0.32
6 23 0.68
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:86290709 original size:24 final size:24
Alignment explanation
Indices: 86290672--86290719 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
86290662 CACCAAGAGT
*
86290672 CAAAAGGAGCCAAAAACGACCAAA
1 CAAAAGGAGACAAAAACGACCAAA
* **
86290696 CAAAAGGGGACAAAATGGACCAAA
1 CAAAAGGAGACAAAAACGACCAAA
86290720 TCGAGAAGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.56, C:0.21, G:0.21, T:0.02
Consensus pattern (24 bp):
CAAAAGGAGACAAAAACGACCAAA
Found at i:86291748 original size:13 final size:13
Alignment explanation
Indices: 86291732--86291764 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
86291722 TTTAATTAAA
*
86291732 TTAGTTAATTAGT
1 TTAGATAATTAGT
86291745 TTAGATAATTAGT
1 TTAGATAATTAGT
86291758 TTA-ATAA
1 TTAGATAA
86291765 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:86306407 original size:27 final size:27
Alignment explanation
Indices: 86306369--86306421 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
86306359 TATCTCCGAG
*
86306369 AAAGAAAGATGCAATTTGGGTTGTAGA
1 AAAGAAAAATGCAATTTGGGTTGTAGA
86306396 AAAGAAAAATGCAATTTGGGTTGTAG
1 AAAGAAAAATGCAATTTGGGTTGTAG
86306422 TTGATCGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.42, C:0.04, G:0.28, T:0.26
Consensus pattern (27 bp):
AAAGAAAAATGCAATTTGGGTTGTAGA
Found at i:86311048 original size:27 final size:26
Alignment explanation
Indices: 86310943--86311054 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
86310933 AGGAAACGTC
* **
86310943 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
86310970 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
86310997 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
86311025 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
86311051 CTGG
1 CTGG
86311055 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:86311049 original size:54 final size:54
Alignment explanation
Indices: 86310943--86311054 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
86310933 AGGAAACGTC
* *
86310943 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTGCCACATATATCTGTT
* * * *
86310997 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-AATCTGGTGACTCTGCCACATATATCTGTT
86311051 CTGG
1 CTGG
86311055 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTGCCACATATATCTGTT
Found at i:86314021 original size:21 final size:21
Alignment explanation
Indices: 86313952--86314022 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
86313942 TATCATGAAC
86313952 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
** * **
86313973 TGGGACGTCACATATATC-ATGAAC
1 TCAGAC--CACA-A-CTCAATGAGT
86313997 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
86314018 TCAGA
1 TCAGA
86314023 TTTCATAATT
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
20 2 0.06
21 14 0.40
22 4 0.11
23 4 0.11
24 9 0.26
25 2 0.06
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:86318169 original size:199 final size:199
Alignment explanation
Indices: 86317829--86318188 Score: 643
Period size: 199 Copynumber: 1.8 Consensus size: 199
86317819 TTGGGGTTTA
* * *
86317829 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCCGAGCTTGGGTTCCGAAGGG
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGCGTAAGAATCCGAGCTTGGGTTCCGAAGGG
86317894 CGTCTGTGACGGCATAATATTGAGTTGAAAACTCGTAAATATTCATACGAGAAATCATATAATAG
66 CGTCTGTGACGGCATAATATTGAGTTGAAAACTCGTAAATATTCATACGAGAAATCATATAATAG
86317959 ATGTTGAAACAATTTTAAACAAATGTGCTACCCGAACCAAGTTTCGAAGGGCCTTCGGGCCAATG
131 ATGTTGAAACAATTTTAAACAAATGTGCTACCCGAACCAAGTTTCGAAGGGCCTTCGGGCCAATG
86318024 TCAT
196 TCAT
* *
86318028 AATCCGAGCTTGGTCTCGAAGGGCTTTTTGAGTCAGCGCTAAGAAT-CGGGCTT-GGTTCCGAAG
1 AATCCGAGCTTGGTCTCGAAGGGC-TTTTGAGCCAGCG-TAAGAATCCGAGCTTGGGTTCCGAAG
86318091 GGCGTCTGTGACGGCATAATATTGAGTTGAAAACTCGTAAATATTCATACGAGAAATCATATAAT
64 GGCGTCTGTGACGGCATAATATTGAGTTGAAAACTCGTAAATATTCATACGAGAAATCATATAAT
86318156 AGATGTTGAAACAATTTTAAACAAATGTGCTAC
129 AGATGTTGAAACAATTTTAAACAAATGTGCTAC
86318189 TTACAGTAAG
Statistics
Matches: 154, Mismatches: 5, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
199 132 0.86
200 17 0.11
201 5 0.03
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (199 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGCGTAAGAATCCGAGCTTGGGTTCCGAAGGG
CGTCTGTGACGGCATAATATTGAGTTGAAAACTCGTAAATATTCATACGAGAAATCATATAATAG
ATGTTGAAACAATTTTAAACAAATGTGCTACCCGAACCAAGTTTCGAAGGGCCTTCGGGCCAATG
TCAT
Found at i:86320068 original size:24 final size:25
Alignment explanation
Indices: 86320036--86320083 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
86320026 CAAGCGAGCC
*
86320036 ATATCAGGAAGCTCA-TAAGAGCTT
1 ATATCAGGAAGCTCACGAAGAGCTT
*
86320060 ATATCAGGATGCTCACGAAGAGCT
1 ATATCAGGAAGCTCACGAAGAGCT
86320084 GCATTTGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (25 bp):
ATATCAGGAAGCTCACGAAGAGCTT
Found at i:86327882 original size:20 final size:20
Alignment explanation
Indices: 86327857--86327902 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
86327847 GTTGGGCCTT
86327857 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
86327877 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
86327896 GCCCATA
1 GCCCATA
86327903 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:86327911 original size:19 final size:20
Alignment explanation
Indices: 86327869--86327912 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
86327859 CCATATTAAC
** *
86327869 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
86327889 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
86327908 ACAGT
1 ACAGT
86327913 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:86327961 original size:22 final size:22
Alignment explanation
Indices: 86327936--86327977 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
86327926 TGCATGATAA
*
86327936 CTCCATCCAACCCTGCACTTGC
1 CTCCATCCAACCCTACACTTGC
* *
86327958 CTCCGTCCATCCCTACACTT
1 CTCCATCCAACCCTACACTT
86327978 CCTGTGGGGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.17, C:0.50, G:0.07, T:0.26
Consensus pattern (22 bp):
CTCCATCCAACCCTACACTTGC
Found at i:86331289 original size:5 final size:5
Alignment explanation
Indices: 86331275--86331311 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
86331265 GGATTCTGTT
86331275 TTTTC TTTTTC TTTTC TTTTC TTTTC TTTTC TTTTC T
1 TTTTC -TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC T
86331312 CATCATCTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:86332968 original size:33 final size:32
Alignment explanation
Indices: 86332931--86332994 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 32
86332921 CTATGGGCCA
86332931 TACTGT-TATCTGAAAATGGGCTAAGGCCCAGTT
1 TACTGTAT-TCTGAAAA-GGGCTAAGGCCCAGTT
**
86332964 TACTGTATTCTGAAAAGGGCTTCGGCCCAGT
1 TACTGTATTCTGAAAAGGGCTAAGGCCCAGT
86332995 ACCCGCTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 13 0.46
33 14 0.50
34 1 0.04
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (32 bp):
TACTGTATTCTGAAAAGGGCTAAGGCCCAGTT
Found at i:86332991 original size:32 final size:33
Alignment explanation
Indices: 86332931--86332994 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
86332921 CTATGGGCCA
86332931 TACTGTTATCTGAAAATGGGCTAAGGCCCAGTT
1 TACTGTTATCTGAAAATGGGCTAAGGCCCAGTT
**
86332964 TACTG-TATTCTGAAAA-GGGCTTCGGCCCAGT
1 TACTGTTA-TCTGAAAATGGGCTAAGGCCCAGT
86332995 ACCCGCTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 15 0.54
33 13 0.46
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (33 bp):
TACTGTTATCTGAAAATGGGCTAAGGCCCAGTT
Found at i:86335375 original size:57 final size:57
Alignment explanation
Indices: 86335287--86335403 Score: 216
Period size: 57 Copynumber: 2.1 Consensus size: 57
86335277 TGGAGAACCC
*
86335287 TTTAAATTTCGTGCTAATGAAGAAGATGATGAATTTTGTGTTATTTTTCCCTTTTTA
1 TTTAAATTTCGTGCTAATGAAGAAGATGATGAATTTTGTATTATTTTTCCCTTTTTA
*
86335344 TTTAAATTTCGTGCTAGTGAAGAAGATGATGAATTTTGTATTATTTTTCCCTTTTTA
1 TTTAAATTTCGTGCTAATGAAGAAGATGATGAATTTTGTATTATTTTTCCCTTTTTA
86335401 TTT
1 TTT
86335404 CATTTAATAT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.50
Consensus pattern (57 bp):
TTTAAATTTCGTGCTAATGAAGAAGATGATGAATTTTGTATTATTTTTCCCTTTTTA
Found at i:86341926 original size:46 final size:48
Alignment explanation
Indices: 86341811--86341926 Score: 137
Period size: 50 Copynumber: 2.4 Consensus size: 48
86341801 TGTCTTCGAC
** * * *
86341811 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATGTCTAAT
1 ATGGACTTACATGGCTCATTCCTCTCTCCAAAGCCA-ATATA-GTCTAAT
* *
86341861 ATGGGCTTACATGGCTCATTCCTCTCTCCAAAGCC-ATATA-TCTGAT
1 ATGGACTTACATGGCTCATTCCTCTCTCCAAAGCCAATATAGTCTAAT
86341907 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
86341927 TCTGTCCTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 24 0.41
48 5 0.09
50 29 0.50
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTCTCTCCAAAGCCAATATAGTCTAAT
Found at i:86343504 original size:40 final size:40
Alignment explanation
Indices: 86343448--86343527 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
86343438 GCAAAATGTG
*
86343448 GGTCCTAAATCCCAGAATACTTCGGCAGCCAGTGTAGGGA
1 GGTCCTAAATCCCAGAATACTTCGGCAGCCAATGTAGGGA
* *
86343488 GGTCCTAAATCTCAGAATACTTCTGCAGCCAATGTAGGGA
1 GGTCCTAAATCCCAGAATACTTCGGCAGCCAATGTAGGGA
86343528 ACTCGAGATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.23
Consensus pattern (40 bp):
GGTCCTAAATCCCAGAATACTTCGGCAGCCAATGTAGGGA
Found at i:86348565 original size:46 final size:46
Alignment explanation
Indices: 86348509--86348665 Score: 178
Period size: 46 Copynumber: 3.4 Consensus size: 46
86348499 TTGTTGAGCA
86348509 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
86348555 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
86348600 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
86348648 CCCGAGCTCGTTGAGTTG
1 TCCGAACTCGTTGAGTTG
86348666 TGTAACACCC
Statistics
Matches: 91, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 44 0.48
47 28 0.31
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:86350063 original size:37 final size:37
Alignment explanation
Indices: 86350013--86350091 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
86350003 TTATTACGAA
* * *
86350013 GTCTTACCCGGACATAATCTCCACACGAAGTTATAGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATAGG
* *
86350050 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATAGG
86350087 GTCTT
1 GTCTT
86350092 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATAGG
Found at i:86350297 original size:47 final size:47
Alignment explanation
Indices: 86350210--86350908 Score: 930
Period size: 47 Copynumber: 14.4 Consensus size: 47
86350200 CCTTTCGAGA
* * * * * * * * *
86350210 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
86350257 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
86350304 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
86350351 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
86350398 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
86350445 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
86350492 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTA-T-CACATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
86350543 CTTATCACACATATACACTTTCACATTCATCACGTCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
86350590 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
86350637 CTTATTACATATATACATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
86350688 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
86350739 CTTATTACATATATACATATACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATAC----ACTTTCACATTCATCACATCGGCTATTAGGC
*
86350790 CTTATCACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
*
86350841 CTTATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATAT--ATACACTTTCACATTCATCACATCGGCTATTAGGC
*
86350890 CTTATTACATATATACACT
1 CTTATCACATATATACACT
86350909 CTCTCGGCTG
Statistics
Matches: 595, Mismatches: 37, Indels: 40
0.89 0.06 0.06
Matches are distributed among these distances:
47 324 0.54
48 1 0.00
49 66 0.11
50 1 0.00
51 187 0.31
53 8 0.01
55 8 0.01
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:86350798 original size:31 final size:31
Alignment explanation
Indices: 86350763--86350850 Score: 74
Period size: 31 Copynumber: 3.2 Consensus size: 31
86350753 ACATATACTT
86350763 TCACATTCATCACATCAGCCATTAGGCCTTA
1 TCACATTCATCACATCAGCCATTAGGCCTTA
86350794 TCACA-T-AT---AT-A--CA-TA--CACTT-
1 TCACATTCATCACATCAGCCATTAGGC-CTTA
*
86350814 TCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATTCATCACATCAGCCATTAGGCCTTA
86350845 TCACAT
1 TCACAT
86350851 ATACATACAC
Statistics
Matches: 43, Mismatches: 1, Indels: 26
0.61 0.01 0.37
Matches are distributed among these distances:
20 6 0.14
21 4 0.09
22 4 0.09
23 2 0.05
25 3 0.07
26 2 0.05
28 2 0.05
29 4 0.09
30 4 0.09
31 12 0.28
ACGTcount: A:0.31, C:0.31, G:0.08, T:0.31
Consensus pattern (31 bp):
TCACATTCATCACATCAGCCATTAGGCCTTA
Found at i:86355243 original size:207 final size:207
Alignment explanation
Indices: 86354883--86355296 Score: 711
Period size: 207 Copynumber: 2.0 Consensus size: 207
86354873 GGTTAAACCA
* *
86354883 ATGTGGATTGAGCAGATTAAGAGTAAACAATTGGAGGACGAGTCATTGGGTCTTCGTTTCCGTCA
1 ATGTGGATTGAGCAGATTAAGAGTAAACAATTAGAGGACGAGTCACTGGGTCTTCGTTTCCGTCA
*
86354948 GGTTGAGAGTGGGGATACTGTGGATTTTAGACTGAATAGCGAAGGGGTGCTCTATTTTTGTGGAA
66 GGTTAAGAGTGGGGATACTGTGGATTTTAGACTGAATAGCGAAGGGGTGCTCTATTTTTGTGGAA
* ** * *
86355013 GACTATGCGTACTGAATGATACTGATTTGAGGCAGTCTATACTACGAAAGGCGCATAGTCGTCCT
131 GAATATGCGTACCAAAGGATACTGATTTGAGGCAGTCTATACTACGAAAGGCGCATAGTAGTCCT
86355078 TATGCTATGCAT
196 TATGCTATGCAT
*
86355090 ATGTGGATTGAGCAGATTAAGAGTAAACTATTAGAGGACGAGTCACTGGGTCTTCGTTTCCGTCA
1 ATGTGGATTGAGCAGATTAAGAGTAAACAATTAGAGGACGAGTCACTGGGTCTTCGTTTCCGTCA
* *
86355155 GGTTAAGAGTGGGGATACTGTGGATTTTGGACTGAATAGCGAAGGGGTGCTCTATTTTTGTGGGA
66 GGTTAAGAGTGGGGATACTGTGGATTTTAGACTGAATAGCGAAGGGGTGCTCTATTTTTGTGGAA
* *
86355220 GAATATGTGTACCAAAGGATACTGATTTGAGGCAGTCTATACTGCGAAAGGCGCATAGTAGTCCT
131 GAATATGCGTACCAAAGGATACTGATTTGAGGCAGTCTATACTACGAAAGGCGCATAGTAGTCCT
86355285 TATGCTATGCAT
196 TATGCTATGCAT
86355297 CCTGGTGAGA
Statistics
Matches: 194, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
207 194 1.00
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (207 bp):
ATGTGGATTGAGCAGATTAAGAGTAAACAATTAGAGGACGAGTCACTGGGTCTTCGTTTCCGTCA
GGTTAAGAGTGGGGATACTGTGGATTTTAGACTGAATAGCGAAGGGGTGCTCTATTTTTGTGGAA
GAATATGCGTACCAAAGGATACTGATTTGAGGCAGTCTATACTACGAAAGGCGCATAGTAGTCCT
TATGCTATGCAT
Found at i:86362002 original size:17 final size:17
Alignment explanation
Indices: 86361980--86362019 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
86361970 ATTCGAGTGC
*
86361980 GGCCCAATCAATGCAGT
1 GGCCCAATCAATGCAAT
86361997 GGCCCAATCAATGCAAT
1 GGCCCAATCAATGCAAT
86362014 GGCCCA
1 GGCCCA
86362020 CACCTAGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.30, C:0.33, G:0.23, T:0.15
Consensus pattern (17 bp):
GGCCCAATCAATGCAAT
Found at i:86363740 original size:40 final size:40
Alignment explanation
Indices: 86363695--86363926 Score: 385
Period size: 40 Copynumber: 5.8 Consensus size: 40
86363685 ATAACCACAA
* * * *
86363695 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
86363735 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
86363775 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
86363815 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
86363855 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
*
86363895 GCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
86363927 CATTCAAATG
Statistics
Matches: 183, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 1 0.01
40 178 0.97
41 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:86369809 original size:19 final size:19
Alignment explanation
Indices: 86369772--86369809 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
86369762 ACCTGTCAGA
*
86369772 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
86369791 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
86369810 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:86374046 original size:17 final size:17
Alignment explanation
Indices: 86374024--86374059 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
86374014 GGAATGCCGT
86374024 TTGAGAAATGGAGCATG
1 TTGAGAAATGGAGCATG
86374041 TTGAGAAATGGAGCATG
1 TTGAGAAATGGAGCATG
86374058 TT
1 TT
86374060 ATAGATGTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.06, G:0.33, T:0.28
Consensus pattern (17 bp):
TTGAGAAATGGAGCATG
Found at i:86380015 original size:2 final size:2
Alignment explanation
Indices: 86380010--86380041 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
86380000 GATTGATATA
*
86380010 TG TG TG TG TG TG TG TG TG TG TG TC TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
86380042 CGCGTAAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.03, G:0.47, T:0.50
Consensus pattern (2 bp):
TG
Found at i:86383564 original size:33 final size:34
Alignment explanation
Indices: 86383517--86383588 Score: 94
Period size: 33 Copynumber: 2.1 Consensus size: 34
86383507 AACAGTGCAT
* * *
86383517 ACAGTAACGGTCTGGGCCT-GAGCCCTATTCATTA
1 ACAGTAACAGTCTGGGCCTAG-GCCCTATGCAGTA
86383551 ACAGT-ACAGTCTGGGCCTAGGCCCTATGCAGTA
1 ACAGTAACAGTCTGGGCCTAGGCCCTATGCAGTA
86383584 ACAGT
1 ACAGT
86383589 GTGGGCCTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 28 0.82
34 6 0.18
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (34 bp):
ACAGTAACAGTCTGGGCCTAGGCCCTATGCAGTA
Found at i:86392640 original size:14 final size:14
Alignment explanation
Indices: 86392621--86392647 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86392611 TTGTTTGCCA
86392621 GTAAAATATTTTCC
1 GTAAAATATTTTCC
86392635 GTAAAATATTTTC
1 GTAAAATATTTTC
86392648 ATTGTTTTAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.44
Consensus pattern (14 bp):
GTAAAATATTTTCC
Found at i:86396833 original size:28 final size:29
Alignment explanation
Indices: 86396802--86396861 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
86396792 AAAGTGATTT
*
86396802 TTGACAAAAATGTCAATT-AGGGATTAAA
1 TTGACAAAAATGTAAATTGAGGGATTAAA
* * *
86396830 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGACAAAAATGTAAATTGAGGGATTAAA
86396859 TTG
1 TTG
86396862 TGAAATAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 15 0.56
29 12 0.44
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.30
Consensus pattern (29 bp):
TTGACAAAAATGTAAATTGAGGGATTAAA
Found at i:86396861 original size:29 final size:28
Alignment explanation
Indices: 86396802--86396866 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 28
86396792 AAAGTGATTT
* *
86396802 TTGACAAAAATGTCAATTAGGGATTAAA
1 TTGAGAAAAATGTAAATTAGGGATTAAA
* *
86396830 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAGAAAAATGTAAATT-AGGGATTAAA
*
86396859 TTGTGAAA
1 TTGAGAAA
86396867 TAAATGAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 15 0.48
29 16 0.52
ACGTcount: A:0.43, C:0.03, G:0.25, T:0.29
Consensus pattern (28 bp):
TTGAGAAAAATGTAAATTAGGGATTAAA
Found at i:86400753 original size:39 final size:39
Alignment explanation
Indices: 86400710--86400790 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
86400700 TTAATGATTT
86400710 AAATGACTCAAGTACATGTAAGATTCATGCGAGTATTGG
1 AAATGACTCAAGTACATGTAAGATTCATGCGAGTATTGG
86400749 AAATGACTCAAGTACATGTAAGATTCATGCGAGTATTGG
1 AAATGACTCAAGTACATGTAAGATTCATGCGAGTATTGG
86400788 AAA
1 AAA
86400791 GTGAAGTAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.27
Consensus pattern (39 bp):
AAATGACTCAAGTACATGTAAGATTCATGCGAGTATTGG
Found at i:86404409 original size:25 final size:25
Alignment explanation
Indices: 86404362--86404451 Score: 96
Period size: 25 Copynumber: 3.6 Consensus size: 25
86404352 GTACATGTAT
*
86404362 GCTCATACAAGCTGTA-AATGGTAA
1 GCTCATACAAGCTGAATAATGGTAA
* *
86404386 GCTTATCCAAGCTGAATAATGGTAA
1 GCTCATACAAGCTGAATAATGGTAA
* *
86404411 GCTCATACGAGCTGAAT-ATCGTTAA
1 GCTCATACAAGCTGAATAAT-GGTAA
86404436 GCTCATA-AGAGCTGAA
1 GCTCATACA-AGCTGAA
86404452 ATCTATAACC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
24 15 0.27
25 40 0.73
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (25 bp):
GCTCATACAAGCTGAATAATGGTAA
Found at i:86416572 original size:40 final size:40
Alignment explanation
Indices: 86416493--86416669 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
86416483 CGGATGATAA
* * * *
86416493 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
86416533 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
86416573 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
86416613 CCGGCCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
86416653 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
86416670 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 101 0.86
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:86416937 original size:22 final size:22
Alignment explanation
Indices: 86416897--86416938 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
86416887 GAATGTGCAT
*
86416897 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
86416919 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
86416939 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:86418627 original size:41 final size:40
Alignment explanation
Indices: 86418555--86418681 Score: 204
Period size: 41 Copynumber: 3.2 Consensus size: 40
86418545 GGACTAAGAT
86418555 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
86418595 CCGAAGGCATTTGTGCCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTG-CTAGTGACTATATCCGGGCTAAGTC
* *
86418636 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
86418675 CCGAAGG
1 CCGAAGG
86418682 TACTTGGGTT
Statistics
Matches: 83, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
39 15 0.18
40 26 0.31
41 42 0.51
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:86427089 original size:20 final size:20
Alignment explanation
Indices: 86427064--86427102 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
86427054 ATGGAAGAAA
*
86427064 ATGGTAATTGTGTGAAATGG
1 ATGGTAATTGTATGAAATGG
86427084 ATGGTAATTGTATGAAATG
1 ATGGTAATTGTATGAAATG
86427103 TTTGAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.31, T:0.36
Consensus pattern (20 bp):
ATGGTAATTGTATGAAATGG
Found at i:86427331 original size:18 final size:18
Alignment explanation
Indices: 86427304--86427339 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
86427294 AAATTTATCG
*
86427304 TTATAGATCAATAAAACT
1 TTATACATCAATAAAACT
86427322 TTATACATCAATAAAACT
1 TTATACATCAATAAAACT
86427340 AAGATTCAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.50, C:0.14, G:0.03, T:0.33
Consensus pattern (18 bp):
TTATACATCAATAAAACT
Found at i:86427937 original size:94 final size:94
Alignment explanation
Indices: 86427775--86428007 Score: 251
Period size: 94 Copynumber: 2.4 Consensus size: 94
86427765 ATTTGGGTGT
* * *
86427775 TATGTGTGCTAGTGTAAGA-CATGTTTGGGACATGCATCGACCACAATATTAGAGCCAGTATAAG
1 TATGTGT-C-AGTGTAAGACCATGTCTGGGACATGCATCGACCACAATATGAGAGCCAATATAAG
* *
86427839 ACCATGTCTGGGACATGGAATCG-GCTTG-A
64 ACCATGTCTGGGACATGGAATCGACCTCGAA
*
86427868 TATGTGTCAGTGTAAGACCATGTCTGGGA-ATGGCATCGGCACCGAC-ATATGAGAGCCAATGTA
1 TATGTGTCAGTGTAAGACCATGTCTGGGACAT-GCATC-G-ACC-ACAATATGAGAGCCAATATA
* *
86427931 AGACCATGTTTGGGACATGGCATCGACCTCGATA
62 AGACCATGTCTGGGACATGGAATCGACCTCGA-A
* *
86427965 TATGAGAGTCAGTGTAAGACCATGTCTGGGACATATCATCGAC
1 TAT--GTGTCAGTGTAAGACCATGTCTGGGACAT-GCATCGAC
86428008 TTTGATGTGT
Statistics
Matches: 118, Mismatches: 11, Indels: 17
0.81 0.08 0.12
Matches are distributed among these distances:
91 11 0.09
92 16 0.14
93 8 0.07
94 40 0.34
95 5 0.04
97 4 0.03
98 2 0.02
99 26 0.22
100 6 0.05
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (94 bp):
TATGTGTCAGTGTAAGACCATGTCTGGGACATGCATCGACCACAATATGAGAGCCAATATAAGAC
CATGTCTGGGACATGGAATCGACCTCGAA
Done.