Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 265 of 279
Found at i:86427972 original size:50 final size:49
Alignment explanation
Indices: 86427785--86428037 Score: 238
Period size: 50 Copynumber: 5.3 Consensus size: 49
86427775 TATGTGTGCT
* * *
86427785 AGTGTAAGA-CATGTTTGGGACAT-GCATCGACCAC-AATATTAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAATATGAGAGCC
* * * * * *
86427831 AGTATAAGACCATGTCTGGGACATGGAATCG-GCTTG-ATAT--GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAATATGAGAGCC
*
86427876 AGTGTAAGACCATGTCTGGGA-ATGGCATCGGCAC-CGACATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTCGA-ATATGAGAGCC
* * *
86427925 AATGTAAGACCATGTTTGGGACATGGCATCGACCTCGATATATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGA-ATATGAGAGCC
** * * * *
86427975 AGTGTAAGACCATGTCTGGGACATATCATCGACTTTG-ATGTGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAATATGAGAGCC
86428023 AGTGTAAGACCATGT
1 AGTGTAAGACCATGT
86428038 TCGAGACATG
Statistics
Matches: 168, Mismatches: 28, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
44 8 0.05
45 24 0.14
46 9 0.05
47 22 0.13
48 28 0.17
49 23 0.14
50 54 0.32
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGAATATGAGAGCC
Found at i:86433383 original size:39 final size:39
Alignment explanation
Indices: 86433339--86433532 Score: 343
Period size: 39 Copynumber: 5.0 Consensus size: 39
86433329 ATTATATTAT
* *
86433339 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
86433378 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
86433417 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
86433456 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
86433495 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
86433533 TCAGTGTCTT
Statistics
Matches: 148, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 148 1.00
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:86442630 original size:22 final size:22
Alignment explanation
Indices: 86442602--86442645 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
86442592 TATGTTTGTT
86442602 TCATTTTAAAATAACTTTTATG
1 TCATTTTAAAATAACTTTTATG
86442624 TCATTTTAAAATAACTTTTATG
1 TCATTTTAAAATAACTTTTATG
86442646 AAAAAATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50
Consensus pattern (22 bp):
TCATTTTAAAATAACTTTTATG
Found at i:86446236 original size:30 final size:30
Alignment explanation
Indices: 86446200--86446264 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
86446190 GTCTCAGCCA
86446200 TGTGTGACACACGGTCAGGTGACACGGCCG
1 TGTGTGACACACGGTCAGGTGACACGGCCG
* *
86446230 TGTGTGACACAGGGTCAGGTGACACGGTCG
1 TGTGTGACACACGGTCAGGTGACACGGCCG
86446260 TGTGT
1 TGTGT
86446265 CCCCTGGTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.18, C:0.22, G:0.38, T:0.22
Consensus pattern (30 bp):
TGTGTGACACACGGTCAGGTGACACGGCCG
Found at i:86461321 original size:33 final size:33
Alignment explanation
Indices: 86461284--86461381 Score: 117
Period size: 33 Copynumber: 3.0 Consensus size: 33
86461274 ACAATGCATG
* * *
86461284 CAGTACAGTCTGGGCCTGAGCCCTATCCAGTAT
1 CAGTACAGTCTGGGCCTTAGCCCTATACAGTAA
*
86461317 CAGTACAGTCTGGG-CTTAGCTCTATACAGTAA
1 CAGTACAGTCTGGGCCTTAGCCCTATACAGTAA
** * *
86461349 CAAAACATTCTGGGCTTTAGCCCTATACAGTAA
1 CAGTACAGTCTGGGCCTTAGCCCTATACAGTAA
86461382 TAGTGTGGGA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
32 25 0.45
33 30 0.55
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (33 bp):
CAGTACAGTCTGGGCCTTAGCCCTATACAGTAA
Found at i:86461622 original size:27 final size:25
Alignment explanation
Indices: 86461570--86461654 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 25
86461560 GCTGCCAGAA
*
86461570 ACAGTAAATGTGGTA-AGCCACCAGT
1 ACAGT-AATGTGGCATAGCCACCAGT
86461595 ATCAGTAATTGTGGCATAGCCACCAGT
1 A-CAGTAA-TGTGGCATAGCCACCAGT
* * *
86461622 AACAGTGAATGTGACATAGTCACCAAT
1 -ACAGT-AATGTGGCATAGCCACCAGT
86461649 ACAGTA
1 ACAGTA
86461655 CTTCCTCCAT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
25 4 0.08
26 15 0.29
27 29 0.57
28 3 0.06
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.22
Consensus pattern (25 bp):
ACAGTAATGTGGCATAGCCACCAGT
Found at i:86466303 original size:23 final size:23
Alignment explanation
Indices: 86466244--86466315 Score: 83
Period size: 23 Copynumber: 3.1 Consensus size: 23
86466234 AAATATGATG
*
86466244 TAATAATAATATAAAATAACAT-A
1 TAATAA-AATATAAAATAATATAA
* * *
86466267 TATTAAAGTGTAAAATAATATAA
1 TAATAAAATATAAAATAATATAA
*
86466290 TAATAAAATATAAAATAGTATAA
1 TAATAAAATATAAAATAATATAA
86466313 TAA
1 TAA
86466316 ATATTATGTA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 12 0.30
23 28 0.70
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (23 bp):
TAATAAAATATAAAATAATATAA
Found at i:86466335 original size:24 final size:25
Alignment explanation
Indices: 86466303--86466368 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 25
86466293 TAAAATATAA
* *
86466303 AATAGTATAATAAATATTATGT-AAT
1 AATAATATAATAAATA-TAGGTAAAT
86466328 AA-AATATAATATAGATATAGGTAAAT
1 AATAATATAATA-A-ATATAGGTAAAT
86466354 AATAATAT-ATAAATA
1 AATAATATAATAAATA
86466369 AAGTTTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 11 0.31
25 8 0.23
26 11 0.31
27 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (25 bp):
AATAATATAATAAATATAGGTAAAT
Found at i:86467315 original size:27 final size:27
Alignment explanation
Indices: 86467285--86467401 Score: 162
Period size: 27 Copynumber: 4.3 Consensus size: 27
86467275 GGCATAATCT
* *
86467285 TCATTTTACCATACAGGTGCATTACAG
1 TCATTTTACCCTACAGGGGCATTACAG
* *
86467312 TCATTTTACCCTAAAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACAG
*
86467339 TCATTTTACCCTACAGGGGTATTACAG
1 TCATTTTACCCTACAGGGGCATTACAG
* * *
86467366 TTATTTTACCCTACAGGGGTATTACTG
1 TCATTTTACCCTACAGGGGCATTACAG
86467393 TCATTTTAC
1 TCATTTTAC
86467402 AAATCAGGGG
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTACAG
Found at i:86467409 original size:27 final size:27
Alignment explanation
Indices: 86467352--86467573 Score: 125
Period size: 27 Copynumber: 8.3 Consensus size: 27
86467342 TTTTACCCTA
* * **
86467352 CAGGGGTATTACAGTTATTTTAC-CCT
1 CAGGGGTATTACTGTAATTTTACAAAT
*
86467378 ACAGGGGTATTACTGTCATTTTACAAAT
1 -CAGGGGTATTACTGTAATTTTACAAAT
* * *
86467406 CAGGGGAATTTCGGTAATTTTACAAAT
1 CAGGGGTATTACTGTAATTTTACAAAT
* ** *
86467433 CAAGATTATT-TTGGTAATTTTACAAAT
1 CAGGGGTATTACT-GTAATTTTACAAAT
* *
86467460 TAGGGGTATT-TTAGTAATTTTACAAAT
1 CAGGGGTATTACT-GTAATTTTACAAAT
* *
86467487 CAGGGGTATT-TTCGTAATTTTAC-AAC
1 CAGGGGTATTACT-GTAATTTTACAAAT
* * * *
86467513 CTAAGGGTATT-TTAGTAATTTCAAAAAT
1 C-AGGGGTATTACT-GTAATTTTACAAAT
* * * *
86467541 CAAGGTTATTTCGGTAATTTTACAAAT
1 CAGGGGTATTACTGTAATTTTACAAAT
86467568 C-GGGGT
1 CAGGGGT
86467574 CTTAACAACC
Statistics
Matches: 156, Mismatches: 34, Indels: 11
0.78 0.17 0.05
Matches are distributed among these distances:
26 6 0.04
27 146 0.94
28 4 0.03
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
CAGGGGTATTACTGTAATTTTACAAAT
Found at i:86467426 original size:54 final size:54
Alignment explanation
Indices: 86467285--86467428 Score: 155
Period size: 54 Copynumber: 2.7 Consensus size: 54
86467275 GGCATAATCT
* * * *
86467285 TCATTTTACCATACAGGTGCATTACAGTCATTTTACCCTAAAGGGGCATTACGG
1 TCATTTTACAATACAGGGGAATTACAGTAATTTTACCCTAAAGGGGCATTACGG
** * * * * *
86467339 TCATTTTACCCTACAGGGGTATTACAGTTATTTTACCCTACAGGGGTATTACTG
1 TCATTTTACAATACAGGGGAATTACAGTAATTTTACCCTAAAGGGGCATTACGG
* *
86467393 TCATTTTACAA-ATCAGGGGAATTTCGGTAATTTTAC
1 TCATTTTACAATA-CAGGGGAATTACAGTAATTTTAC
86467429 AAATCAAGAT
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 1 0.01
54 75 0.99
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (54 bp):
TCATTTTACAATACAGGGGAATTACAGTAATTTTACCCTAAAGGGGCATTACGG
Found at i:86467453 original size:54 final size:54
Alignment explanation
Indices: 86467395--86467573 Score: 218
Period size: 54 Copynumber: 3.3 Consensus size: 54
86467385 TATTACTGTC
* ** *
86467395 ATTTTACAAATCAGGGGAATTTCGGTAATTTTACAAATCAAGATTATTTTGGTA
1 ATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAATCAAGGTTATTTTGGTA
* * * *
86467449 ATTTTACAAATTAGGGGTATTTTAGTAATTTTACAAATCAGGGGTATTTTCGTA
1 ATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAATCAAGGTTATTTTGGTA
* * * * *
86467503 ATTTTAC-AACCTAAGGGTATTTTAGTAATTTCAAAAATCAAGGTTATTTCGGTA
1 ATTTTACAAATC-AGGGGTATTTTAGTAATTTTACAAATCAAGGTTATTTTGGTA
86467557 ATTTTACAAATC-GGGGT
1 ATTTTACAAATCAGGGGT
86467574 CTTAACAACC
Statistics
Matches: 104, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
53 6 0.06
54 95 0.91
55 3 0.03
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (54 bp):
ATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAATCAAGGTTATTTTGGTA
Found at i:86467524 original size:81 final size:82
Alignment explanation
Indices: 86467395--86467573 Score: 213
Period size: 81 Copynumber: 2.2 Consensus size: 82
86467385 TATTACTGTC
* * * *
86467395 ATTTTACAAATCAGGGG-AATTTCGGTAATTTTACAAATCAAGATTATTTTGGTAATTTTACAAA
1 ATTTTACAAATCAGGGGTAATTTCGGTAATTTTACAAATCAAGAGTATTTTAGTAATTTCAAAAA
* * *
86467459 TTAGGGGTATTTTAGTA
66 TCAAGGGTATTTCAGTA
* * *
86467476 ATTTTACAAATCAGGGGTATTTTC-GTAATTTTAC-AACCTAAGGGTATTTTAGTAATTTCAAAA
1 ATTTTACAAATCAGGGGTAATTTCGGTAATTTTACAAATC-AAGAGTATTTTAGTAATTTCAAAA
* *
86467539 ATCAAGGTTATTTCGGTA
65 ATCAAGGGTATTTCAGTA
86467557 ATTTTACAAATC-GGGGT
1 ATTTTACAAATCAGGGGT
86467574 CTTAACAACC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
80 8 0.10
81 71 0.85
82 5 0.06
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (82 bp):
ATTTTACAAATCAGGGGTAATTTCGGTAATTTTACAAATCAAGAGTATTTTAGTAATTTCAAAAA
TCAAGGGTATTTCAGTA
Found at i:86473524 original size:49 final size:49
Alignment explanation
Indices: 86473429--86473558 Score: 145
Period size: 49 Copynumber: 2.7 Consensus size: 49
86473419 AGCACATTAA
* * * *
86473429 GCCGATGACATGTCCCAGACAGGCCTTACATTGACTTTCATATATCGAG-
1 GCCGATGACATGTCCCAGACAGGTCTTACACTGACTCTCACATATCG-GT
* * * *
86473478 GCCGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCACCTATCGGT
1 GCCGATGACATGTCCCAGACAGGTCTTACACTGACTCTCACATATCGGT
* * *
86473527 GTCTATGTCATGTCCCAGACAGGTCTTACACT
1 GCCGATGACATGTCCCAGACAGGTCTTACACT
86473559 AACACACAAC
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
48 1 0.01
49 67 0.99
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.27
Consensus pattern (49 bp):
GCCGATGACATGTCCCAGACAGGTCTTACACTGACTCTCACATATCGGT
Found at i:86473649 original size:48 final size:46
Alignment explanation
Indices: 86473573--86473744 Score: 157
Period size: 48 Copynumber: 3.6 Consensus size: 46
86473563 CACAACAAGC
* *
86473573 TGATGCCATGTCTCAGACAGGTCTTACACTAACTTGTATACCTCGAGGT
1 TGATG-CATGTCCCAGACATGTCTTACACT-ACTTGTATA-CTCGAGGT
* * * * *
86473622 TGATGAATGTCCCAGACATGTCTTACACTAGTTCTCAT-CTCAATGT
1 TGATGCATGTCCCAGACATGTCTTACACTACTTGT-ATACTCGAGGT
* * * * * *
86473668 TGATGCATGTCCCAAACATGTCTTATACTGGCTGGAATATCTCGAGGC
1 TGATGCATGTCCCAGACATGTCTTACACT-ACTTGTATA-CTCGAGGT
*
86473716 TGATGCATGTCCCAGATATGTCTTACACT
1 TGATGCATGTCCCAGACATGTCTTACACT
86473745 GGCTCTCAAT
Statistics
Matches: 98, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
46 34 0.35
47 5 0.05
48 54 0.55
49 5 0.05
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (46 bp):
TGATGCATGTCCCAGACATGTCTTACACTACTTGTATACTCGAGGT
Found at i:86473746 original size:48 final size:48
Alignment explanation
Indices: 86473571--86473793 Score: 188
Period size: 46 Copynumber: 4.7 Consensus size: 48
86473561 CACACAACAA
* * * * *
86473571 GCTGATGCCATGTCTCAGACAGGTCTTACACTAACTTGTATACCTCGAG
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTTGAATATCTCGAG
* * * * *
86473620 GTTGATGAATGTCCCAGACATGTCTTACACTAG-TT--CTCATCTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTGAAT-ATCTCGAG
* * * * *
86473666 GTTGATGCATGTCCCAAACATGTCTTATACTGGCTGGAATATCTCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTGAATATCTCGAG
* * * *
86473714 GCTGATGCATGTCCCAGATATGTCTTACACTGGCTCTCAATA--T-GTG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCT-TGAATATCTCGAG
**
86473760 GCCAATGCATGTCCCAGACATGTCTTACACTAGC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC
86473794 ACACATATCA
Statistics
Matches: 141, Mismatches: 28, Indels: 13
0.77 0.15 0.07
Matches are distributed among these distances:
45 1 0.01
46 66 0.47
47 4 0.03
48 59 0.42
49 11 0.08
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (48 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTTGAATATCTCGAG
Found at i:86473768 original size:94 final size:93
Alignment explanation
Indices: 86473614--86473786 Score: 224
Period size: 94 Copynumber: 1.8 Consensus size: 93
86473604 ACTTGTATAC
* * * *
86473614 CTCGAGGTTGATGAATGTCCCAGACATGTCTTACACTAGTTCTCATCTCAATGTTGATGCATGTC
1 CTCGAGGCTGATGAATGTCCCAGACATGTCTTACACTAGCTCTCATAT-AATGTGGATGCATGTC
86473679 CCAAACATGTCTTATACTGGCTGGAATAT
65 CCAAACATGTCTTATACTGGCTGGAATAT
* * *
86473708 CTCGAGGCTGATGCATGTCCCAGATATGTCTTACACTGGCTCTCA-AT-ATGTGGCCAATGCATG
1 CTCGAGGCTGATGAATGTCCCAGACATGTCTTACACTAGCTCTCATATAATGTGG---ATGCATG
*
86473771 TCCCAGACATGTCTTA
63 TCCCAAACATGTCTTA
86473787 CACTAGCACA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
91 5 0.07
93 1 0.01
94 62 0.91
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (93 bp):
CTCGAGGCTGATGAATGTCCCAGACATGTCTTACACTAGCTCTCATATAATGTGGATGCATGTCC
CAAACATGTCTTATACTGGCTGGAATAT
Found at i:86473802 original size:94 final size:93
Alignment explanation
Indices: 86473536--86473802 Score: 204
Period size: 94 Copynumber: 2.9 Consensus size: 93
86473526 TGTCTATGTC
* * * * * * * *
86473536 ATGTCCCAGACAGGTCTTACACTAACACACA-ACAA-GCT-GATGCCATGTCTCAGACAGGTCTT
1 ATGTCCCAGACATGTCTTACACTAGCTCTCATATAATG-TGGATG-CATGTCCCAAACATGTCTT
* *** * *
86473598 ACACTAACTTGTATACCTCGAGGTTGATGA
64 ACACTAGCTACAATATCTCGAGGCTGATGA
* * *
86473628 ATGTCCCAGACATGTCTTACACTAGTTCTCATCTCAATGTTGATGCATGTCCCAAACATGTCTTA
1 ATGTCCCAGACATGTCTTACACTAGCTCTCATAT-AATGTGGATGCATGTCCCAAACATGTCTTA
* * ** *
86473693 TACTGGCTGGAATATCTCGAGGCTGATGC
65 CACTAGCTACAATATCTCGAGGCTGATGA
* * *
86473722 ATGTCCCAGATATGTCTTACACTGGCTCTCA-AT-ATGTGGCCAATGCATGTCCCAGACATGTCT
1 ATGTCCCAGACATGTCTTACACTAGCTCTCATATAATGTGG---ATGCATGTCCCAAACATGTCT
86473785 TACACTAGC-ACACATATC
63 TACACTAGCTACA-ATATC
86473803 ACCTAATGTC
Statistics
Matches: 139, Mismatches: 28, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
91 5 0.04
92 26 0.19
93 2 0.01
94 101 0.73
95 5 0.04
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (93 bp):
ATGTCCCAGACATGTCTTACACTAGCTCTCATATAATGTGGATGCATGTCCCAAACATGTCTTAC
ACTAGCTACAATATCTCGAGGCTGATGA
Found at i:86474477 original size:20 final size:18
Alignment explanation
Indices: 86474440--86474490 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
86474430 CTATAGCAAC
86474440 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
86474457 TCACATATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
86474477 TTACAACTTTACAA
1 TCACAA-TTTACAA
86474491 AATAGCCTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:86487629 original size:80 final size:80
Alignment explanation
Indices: 86487536--86487689 Score: 272
Period size: 80 Copynumber: 1.9 Consensus size: 80
86487526 TACCAGCTCG
*
86487536 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTTCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGA
86487601 TAACATTCCAGCATA
66 TAACATTCCAGCATA
* * *
86487616 TAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCAGGAAGCCTGCGGGTCTTTAAGCCCGGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGA
86487681 TAACATTCC
66 TAACATTCC
86487690 TCAAGTATCA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 70 1.00
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGA
TAACATTCCAGCATA
Found at i:86487689 original size:40 final size:39
Alignment explanation
Indices: 86487537--86487682 Score: 213
Period size: 40 Copynumber: 3.7 Consensus size: 39
86487527 ACCAGCTCGT
*
86487537 AGCCTGCGGGTCTTTAAGCCCGGATACAATTTCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCA-GA
* *
86487577 AGCCTGCGGGTCTTTAAGCCCAGATA-ACATTCCAGCATA
1 AGCCTGCGGGTCTTTAAGCCCGGATACA-ATTCCAGCAGA
*
86487616 TAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCAGGA
1 -AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCA-GA
86487657 AGCCTGCGGGTCTTTAAGCCCGGATA
1 AGCCTGCGGGTCTTTAAGCCCGGATA
86487683 ACATTCCTCA
Statistics
Matches: 95, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
39 2 0.02
40 91 0.96
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (39 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAGA
Found at i:86492564 original size:18 final size:18
Alignment explanation
Indices: 86492541--86492577 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
86492531 TCTTTCTTTT
86492541 GCAATTCACAACTGCATC
1 GCAATTCACAACTGCATC
*
86492559 GCAATTCACAATTGCATC
1 GCAATTCACAACTGCATC
86492577 G
1 G
86492578 TGCACAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (18 bp):
GCAATTCACAACTGCATC
Found at i:86495121 original size:40 final size:40
Alignment explanation
Indices: 86495076--86495189 Score: 169
Period size: 40 Copynumber: 2.9 Consensus size: 40
86495066 TTTCAGCATG
86495076 AAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAACA-T
1 AAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAACACT
* *
86495115 ATAGCCTGCAGGTCTTTAAGCCCGGAT-ACAATTCCAGCACT
1 A-AGCCTGCGGGTCTTTAAGCCCGGATAAC-ATTCCAACACT
*
86495156 AAGCCTGCGGTTCTTTAAGCCCGGATAACATTCC
1 AAGCCTGCGGGTCTTTAAGCCCGGATAACATTCC
86495190 TCAAGTATCA
Statistics
Matches: 67, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
39 3 0.04
40 60 0.90
41 4 0.06
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
AAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAACACT
Found at i:86505249 original size:21 final size:21
Alignment explanation
Indices: 86505223--86505266 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
86505213 AGGGCCAATG
*
86505223 TAGTAATTATACCTATATATA
1 TAGTAATTATACCTATACATA
86505244 TAGTAATTATACCTATACATA
1 TAGTAATTATACCTATACATA
86505265 TA
1 TA
86505267 TAGTGGACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (21 bp):
TAGTAATTATACCTATACATA
Found at i:86505389 original size:16 final size:15
Alignment explanation
Indices: 86505368--86505399 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
86505358 TAGAATATAA
86505368 AAAGAAGAAAGAAAAG
1 AAAGAAGAAA-AAAAG
86505384 AAAGAAGAAAAAAAG
1 AAAGAAGAAAAAAAG
86505399 A
1 A
86505400 GAATGCACGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (15 bp):
AAAGAAGAAAAAAAG
Found at i:86508543 original size:50 final size:52
Alignment explanation
Indices: 86508462--86508560 Score: 175
Period size: 50 Copynumber: 1.9 Consensus size: 52
86508452 ATGCATGACT
86508462 TAATTTAATGATGCAAACTTTAACTAACATGAGAGTTACATAATACATGTCA
1 TAATTTAATGATGCAAACTTTAACTAACATGAGAGTTACATAATACATGTCA
*
86508514 TAATTT-ATGATGCAAAC-TTAACTAACATGAGAGTTACATAATGCATG
1 TAATTTAATGATGCAAACTTTAACTAACATGAGAGTTACATAATACATG
86508561 ACTTTATTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
50 29 0.63
51 11 0.24
52 6 0.13
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.32
Consensus pattern (52 bp):
TAATTTAATGATGCAAACTTTAACTAACATGAGAGTTACATAATACATGTCA
Found at i:86512035 original size:51 final size:51
Alignment explanation
Indices: 86511956--86512070 Score: 185
Period size: 51 Copynumber: 2.3 Consensus size: 51
86511946 TTTTGATCAA
86511956 TGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAATGACAAG
1 TGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAATGACAAG
* * * * *
86512007 TGACAAGTGATAAGTTGTAGCTTTAGCTACACTTATCTGATCAGTTACAAG
1 TGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAATGACAAG
86512058 TGACAAGTGATAA
1 TGACAAGTGATAA
86512071 ATGTGATCTA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.29
Consensus pattern (51 bp):
TGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAATGACAAG
Found at i:86517077 original size:19 final size:19
Alignment explanation
Indices: 86517034--86517083 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
86517024 ATTAATTTTT
*
86517034 TTAAATTTTAATTTAAATA
1 TTAAATTATAATTTAAATA
*
86517053 TATAAATTATATTTTAAATA
1 T-TAAATTATAATTTAAATA
*
86517073 TTAAAATATAA
1 TTAAATTATAA
86517084 CCATTACAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TTAAATTATAATTTAAATA
Found at i:86522944 original size:25 final size:24
Alignment explanation
Indices: 86522910--86522958 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
86522900 ATTTGACAAG
* *
86522910 TTTAGGTACCAAATTGAATAAAAAA
1 TTTAGATACCAAATT-AAGAAAAAA
86522935 TTTAGATACCAAATTAAGAAAAAA
1 TTTAGATACCAAATTAAGAAAAAA
86522959 CTGTCAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.55, C:0.08, G:0.10, T:0.27
Consensus pattern (24 bp):
TTTAGATACCAAATTAAGAAAAAA
Found at i:86524870 original size:27 final size:26
Alignment explanation
Indices: 86524840--86524900 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
86524830 ATTTTACCAC
*
86524840 GGTAAAATCATCAAAAAATTTATTAGG
1 GGTAAAATCATC-AAAAATTTACTAGG
* * *
86524867 GGTAAGATCGTCAAAATTTTACTAGG
1 GGTAAAATCATCAAAAATTTACTAGG
86524893 GGTAAAAT
1 GGTAAAAT
86524901 AGGGATGAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 19 0.66
27 10 0.34
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.30
Consensus pattern (26 bp):
GGTAAAATCATCAAAAATTTACTAGG
Found at i:86526930 original size:91 final size:92
Alignment explanation
Indices: 86526835--86527020 Score: 236
Period size: 91 Copynumber: 2.0 Consensus size: 92
86526825 AAACTTTTTC
* * * **
86526835 AAAAAA-AAG-CAATTAAGTCCCATCCTT-TTTTTTGCAGTTAATTGGGTACTTGAATTTTTTAA
1 AAAAAAGAAGACAATTAAG--CC-TCCTTGTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAA
86526897 ATGCATCAAAAAGGCCCTCAAACTT-TAAA
63 ATGCATCAAAAAGGCCCTCAAACTTATAAA
**
86526926 AAAAAAGAAGACAATTAAGCCTTTTTGTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATG
1 AAAAAAGAAGACAATTAAGCCTCCTTGTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATG
* *
86526991 CATTAAAAAGGCCTTCAAACTTATAAA
66 CATCAAAAAGGCCCTCAAACTTATAAA
86527018 AAA
1 AAA
86527021 CAATTAAGCC
Statistics
Matches: 82, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
90 3 0.04
91 61 0.74
92 10 0.12
93 8 0.10
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (92 bp):
AAAAAAGAAGACAATTAAGCCTCCTTGTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATG
CATCAAAAAGGCCCTCAAACTTATAAA
Found at i:86527042 original size:91 final size:87
Alignment explanation
Indices: 86526860--86527068 Score: 215
Period size: 91 Copynumber: 2.4 Consensus size: 87
86526850 AGTCCCATCC
* * * **
86526860 TTTTTTTTGCAGTTAATTGGGTACTTGAATTTTTTAAATGCATCAAAAAGGCCCTCAAACTTTAA
1 TTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGGCCCTCAAACTTTAA
*
86526925 AAAAAAAGAAGACAATTAAGCCTTT
66 AAAAAAAGAAGACAACTAAG---TT
* *
86526950 TTGTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCATTAAAAAGGCCTTCAAACTTAT
1 TT-TTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGGCCCTCAAACTT-T
** ** *
86527015 AAAAAACAATTAAG-CCCCTGA-TT
64 AAAAAA-AAAGAAGACAACTAAGTT
* *
86527038 TTTTTTTTGCACTCAATTAGGTATTTGAACT
1 TTTTTTTTGCACTCAATTGGGTACTTGAACT
86527069 GTAAAAATAC
Statistics
Matches: 101, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
87 27 0.27
88 4 0.04
90 2 0.02
91 53 0.52
92 10 0.10
93 5 0.05
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.37
Consensus pattern (87 bp):
TTTTTTTTGCACTCAATTGGGTACTTGAACTTTCAAAATGCATCAAAAAGGCCCTCAAACTTTAA
AAAAAAAGAAGACAACTAAGTT
Found at i:86527215 original size:10 final size:9
Alignment explanation
Indices: 86527200--86527337 Score: 55
Period size: 9 Copynumber: 14.7 Consensus size: 9
86527190 AAAAAAATCA
*
86527200 ATAAAAGTT
1 ATAAAAATT
86527209 ATAAAAATT
1 ATAAAAATT
**
86527218 ATTAAATTTT
1 A-TAAAAATT
86527228 AATAAAAA-T
1 -ATAAAAATT
*
86527237 ACAAAAATAT
1 ATAAAAAT-T
* *
86527247 TTAAAATTT
1 ATAAAAATT
86527256 ATTAAAAA-T
1 A-TAAAAATT
* *
86527265 AGAAAAAAT
1 ATAAAAATT
**
86527274 ATGAAATCTT
1 AT-AAAAATT
*
86527284 AAAAAAATT
1 ATAAAAATT
86527293 ATAAAATATTT
1 ATAAAA-A-TT
* **
86527304 TTAAATTTT
1 ATAAAAATT
*
86527313 ATAAAAATC
1 ATAAAAATT
86527322 ATAAAAAATT
1 AT-AAAAATT
86527332 ATAAAA
1 ATAAAA
86527338 TACATCAAAA
Statistics
Matches: 91, Mismatches: 28, Indels: 20
0.65 0.20 0.14
Matches are distributed among these distances:
8 11 0.12
9 38 0.42
10 35 0.38
11 7 0.08
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (9 bp):
ATAAAAATT
Found at i:86527232 original size:29 final size:28
Alignment explanation
Indices: 86527199--86527338 Score: 104
Period size: 28 Copynumber: 4.9 Consensus size: 28
86527189 TAAAAAAATC
86527199 AATAAAAGTTATAAAAATTATTAAATTTT
1 AATAAAA-TTATAAAAATTATTAAATTTT
* * *
86527228 AATAAAAATACAAAAA-TATTTAAAATTT
1 AATAAAATTATAAAAATTA-TTAAATTTT
* * * * * *
86527256 ATTAAAAATAGAAAAAATATGAAATCTT
1 AATAAAATTATAAAAATTATTAAATTTT
* *
86527284 AAAAAAATTATAAAATATTTTTAAATTTT
1 AATAAAATTATAAAA-ATTATTAAATTTT
* *
86527313 -ATAAAAATCATAAAAAATTATAAAAT
1 AAT-AAAATTAT-AAAAATTATTAAAT
86527339 ACATCAAAAA
Statistics
Matches: 86, Mismatches: 20, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
27 2 0.02
28 47 0.55
29 33 0.38
30 4 0.05
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (28 bp):
AATAAAATTATAAAAATTATTAAATTTT
Found at i:86527319 original size:56 final size:57
Alignment explanation
Indices: 86527211--86527330 Score: 138
Period size: 56 Copynumber: 2.1 Consensus size: 57
86527201 TAAAAGTTAT
* * *
86527211 AAAAATTATTAAATTTTAATAAAAATACAAAAATATTTAAAATTTATTAAAAAT-AG
1 AAAAAATATGAAATCTTAATAAAAATACAAAAATATTTAAAATTTATTAAAAATCAG
* * * *
86527267 AAAAAATATGAAATCTTAA-AAAAATTATAAAATATTTTTAAATTTTA-TAAAAATCAT
1 AAAAAATATGAAATCTTAATAAAAA-TACAAAA-ATATTTAAAATTTATTAAAAATCAG
86527324 AAAAAAT
1 AAAAAAT
86527331 TATAAAATAC
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
55 5 0.09
56 29 0.54
57 20 0.37
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.35
Consensus pattern (57 bp):
AAAAAATATGAAATCTTAATAAAAATACAAAAATATTTAAAATTTATTAAAAATCAG
Found at i:86527652 original size:9 final size:9
Alignment explanation
Indices: 86527640--86527716 Score: 57
Period size: 10 Copynumber: 8.2 Consensus size: 9
86527630 TATAAAAAAA
*
86527640 TTATGATTT
1 TTATAATTT
*
86527649 TTATAAAATT
1 TTAT-AATTT
*
86527659 TTACAATTCT
1 TTATAATT-T
*
86527669 TTATGATTT
1 TTATAATTT
86527678 TTATAATTTT
1 TTATAA-TTT
*
86527688 TTTTAATTT
1 TTATAATTT
*
86527697 TTAATAAATT
1 TT-ATAATTT
86527707 TTA-AATTT
1 TTATAATTT
86527715 TT
1 TT
86527717 TTATTAAAAT
Statistics
Matches: 53, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
8 6 0.11
9 19 0.36
10 28 0.53
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (9 bp):
TTATAATTT
Found at i:86527695 original size:29 final size:28
Alignment explanation
Indices: 86527640--86527718 Score: 79
Period size: 29 Copynumber: 2.8 Consensus size: 28
86527630 TATAAAAAAA
** *
86527640 TTATGATTTTTATAAAATTTTACAATTCT
1 TTATGATTTTTATAATTTTTTTCAATT-T
*
86527669 TTATGATTTTTATAATTTTTTTTAATTT
1 TTATGATTTTTATAATTTTTTTCAATTT
* *
86527697 TTAATAAATTTTA-AATTTTTTT
1 TT-ATGATTTTTATAATTTTTTT
86527719 ATTAAAATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
28 12 0.28
29 31 0.72
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (28 bp):
TTATGATTTTTATAATTTTTTTCAATTT
Found at i:86527747 original size:30 final size:29
Alignment explanation
Indices: 86527677--86527747 Score: 72
Period size: 30 Copynumber: 2.4 Consensus size: 29
86527667 CTTTATGATT
** *
86527677 TTTATAATTTTTTTTAATTTTTAATAAAT
1 TTTATAATTTTTTTTAAAATTTAATAAAC
* *
86527706 TTTA-AATTTTTTTATTAAAATTTATTCAAC
1 TTTATAA-TTTTTT-TTAAAATTTAATAAAC
86527736 TTTATAATTTTT
1 TTTATAATTTTT
86527748 ATTGATTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
28 2 0.06
29 10 0.29
30 20 0.59
31 2 0.06
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (29 bp):
TTTATAATTTTTTTTAAAATTTAATAAAC
Found at i:86527758 original size:19 final size:19
Alignment explanation
Indices: 86527657--86527759 Score: 59
Period size: 19 Copynumber: 5.3 Consensus size: 19
86527647 TTTTATAAAA
*
86527657 TTTTACAATTCTTTA-TGAT
1 TTTTATAATT-TTTATTGAT
* *
86527676 TTTTATAATTTTTTTTAAT
1 TTTTATAATTTTTATTGAT
*
86527695 TTTTAATAAATTTTAAATT--T
1 TTTT-AT-AATTTT-TATTGAT
** * *
86527715 TTTTATTAAAATTTATTCAA
1 TTTTA-TAATTTTTATTGAT
*
86527735 CTTTATAATTTTTATTGAT
1 TTTTATAATTTTTATTGAT
86527754 TTTTAT
1 TTTTAT
86527760 TTTTTATCAT
Statistics
Matches: 62, Mismatches: 15, Indels: 14
0.68 0.16 0.15
Matches are distributed among these distances:
18 6 0.10
19 36 0.58
20 12 0.19
21 6 0.10
22 2 0.03
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTATAATTTTTATTGAT
Found at i:86536654 original size:39 final size:39
Alignment explanation
Indices: 86536610--86536816 Score: 297
Period size: 39 Copynumber: 5.3 Consensus size: 39
86536600 ATATGAGATT
86536610 AAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
1 AAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
*
86536649 AAAAATATCCGGACATGAGGTCCGTAGGCTATATGCTGG
1 AAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
* * * * *
86536688 AAAAATATGCGGACATGAGATCCACAGGCTATAGGCTAG
1 AAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
* * *
86536727 AAATATATCCGGACATGAGATCCGCAGGCTATATGCTAG
1 AAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
* * **
86536766 AAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGG
1 AAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
86536805 AAAAATATCCGG
1 AAAAATATCCGG
86536817 GTTAAAGACC
Statistics
Matches: 151, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 151 1.00
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (39 bp):
AAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGG
Found at i:86536833 original size:117 final size:116
Alignment explanation
Indices: 86536614--86536842 Score: 307
Period size: 117 Copynumber: 2.0 Consensus size: 116
86536604 GAGATTAAAA
* * *
86536614 ATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGGTCCGTAGGCT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGGTCCGCAGGCT
* * * * *
86536679 ATATGCTGGAAAAATATGCGGACATGAGATCCACAGGCTATAGGCTAGAAAT
66 ACATGCTGGAAAAATATCCGGACATAAGACCCACAGGCT-TACGCTAGAAAT
* *
86536731 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCCGCAGGCT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGGTCCGCAGGCT
* ** *
86536796 ACGTGCTGGAAAAATATCCGG-GTTAAAGACCCGCAGGCTTACGCTAG
66 ACATGCTGGAAAAATATCCGGACAT-AAGACCCACAGGCTTACGCTAG
86536843 TAATGTATTC
Statistics
Matches: 97, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
116 8 0.08
117 89 0.92
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (116 bp):
ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAAATATCCGGACATGAGGTCCGCAGGCT
ACATGCTGGAAAAATATCCGGACATAAGACCCACAGGCTTACGCTAGAAAT
Found at i:86537041 original size:39 final size:39
Alignment explanation
Indices: 86536983--86537082 Score: 164
Period size: 39 Copynumber: 2.6 Consensus size: 39
86536973 GTGCTTATAG
*
86536983 CGGACATGAGATCCACAGGCTATAGGCTAGAAATATATC
1 CGGACATGAGATCCGCAGGCTATAGGCTAGAAATATATC
*
86537022 CGGACATGAGATCCGCAGGCTATATGCTAGAAATATATC
1 CGGACATGAGATCCGCAGGCTATAGGCTAGAAATATATC
* *
86537061 CGGACTTGAGGTCCGCAGGCTA
1 CGGACATGAGATCCGCAGGCTA
86537083 CGTGCTGGAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (39 bp):
CGGACATGAGATCCGCAGGCTATAGGCTAGAAATATATC
Found at i:86537208 original size:286 final size:286
Alignment explanation
Indices: 86536696--86537267 Score: 1099
Period size: 286 Copynumber: 2.0 Consensus size: 286
86536686 GGAAAAATAT
86536696 GCGGACATGAGATCCACAGGCTATAGGCTAGAAATATATCCGGACATGAGATCCGCAGGCTATAT
1 GCGGACATGAGATCCACAGGCTATAGGCTAGAAATATATCCGGACATGAGATCCGCAGGCTATAT
86536761 GCTAGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGGGTTAAAGAC
66 GCTAGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGGGTTAAAGAC
86536826 CCGCAGGCTTACGCTAGTAATGTATTCCGAGCTCTAAGATTTGACAGAACCGATACCAGTAAGTT
131 CCGCAGGCTTACGCTAGTAATGTATTCCGAGCTCTAAGATTTGACAGAACCGATACCAGTAAGTT
*
86536891 AAATAAGATTTCAACTTTGAATATCAGTGGTAAACATCATTGCGTAAGTATTATATGTTTTACAT
196 AAATAAGATTTCAACTTCGAATATCAGTGGTAAACATCATTGCGTAAGTATTATATGTTTTACAT
86536956 GTTAAGGTTCGTGTTATGTGCTTATA
261 GTTAAGGTTCGTGTTATGTGCTTATA
86536982 GCGGACATGAGATCCACAGGCTATAGGCTAGAAATATATCCGGACATGAGATCCGCAGGCTATAT
1 GCGGACATGAGATCCACAGGCTATAGGCTAGAAATATATCCGGACATGAGATCCGCAGGCTATAT
*
86537047 GCTAGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATTCGGGTTAAAGAC
66 GCTAGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGGGTTAAAGAC
* * *
86537112 CCGCAGGCTTACGCTAGTGATGTATTCCGAGCTCTAAGATTTGACAGAACCTATGCCAGTAAGTT
131 CCGCAGGCTTACGCTAGTAATGTATTCCGAGCTCTAAGATTTGACAGAACCGATACCAGTAAGTT
86537177 AAATAAGATTTCAACTTCGAATATCAGTGGTAAACATCATTGCGTAAGTATTATATGTTTTACAT
196 AAATAAGATTTCAACTTCGAATATCAGTGGTAAACATCATTGCGTAAGTATTATATGTTTTACAT
86537242 GTTAAGGTTCGTGTTATGTGCTTATA
261 GTTAAGGTTCGTGTTATGTGCTTATA
86537268 TTTGAATTGA
Statistics
Matches: 281, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
286 281 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (286 bp):
GCGGACATGAGATCCACAGGCTATAGGCTAGAAATATATCCGGACATGAGATCCGCAGGCTATAT
GCTAGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGGGTTAAAGAC
CCGCAGGCTTACGCTAGTAATGTATTCCGAGCTCTAAGATTTGACAGAACCGATACCAGTAAGTT
AAATAAGATTTCAACTTCGAATATCAGTGGTAAACATCATTGCGTAAGTATTATATGTTTTACAT
GTTAAGGTTCGTGTTATGTGCTTATA
Found at i:86538608 original size:110 final size:109
Alignment explanation
Indices: 86538408--86538743 Score: 379
Period size: 110 Copynumber: 3.1 Consensus size: 109
86538398 AGAACTTTGA
* * * * *
86538408 CCGGCTCACGATGCTGCTCACACAAGCTGTAGAGAATTCGCAACACATGCAAAATCTCAAGTCAT
1 CCGGCTCACGATGTTGCTCACACAAGCTGTAGAGAATCCGCAACATATGCAAGATCTCAAGCCAT
**
86538473 CGTTACAGTCTGTATCATCGGTACATAGTACCTACTAATTAATCC
66 CGTTACAGTCTGTATCA-CAATACATAGTACCTACTAATTAATCC
** * * * * * *
86538518 TTGGCTCACGATGTTGCTTACACAAGCTATAAAGAATCCACAACATATGCAGGATCTTAAGCCAT
1 CCGGCTCACGATGTTGCTCACACAAGCTGTAGAGAATCCGCAACATATGCAAGATCTCAAGCCAT
* *
86538583 CGTTATAGTCTGTATCACCAATACATAGTACCTACTAATTCATCC
66 CGTTACAGTCTGTATCA-CAATACATAGTACCTACTAATTAATCC
* * * * * *
86538628 CCAGCCCACGATGTTGCTCACAGAAGATGTAGAGAATCCGCAACATATACAAGATATCAAGCCAT
1 CCGGCTCACGATGTTGCTCACACAAGCTGTAGAGAATCCGCAACATATGCAAGATCTCAAGCCAT
* * * *
86538693 CGTTACAATCTGTATCATAAGTACATA-T-CCTACTAAATAATCA
66 CGTTACAGTCTGTATCACAA-TACATAGTACCTACTAATTAATCC
*
86538736 CGGGCTCA
1 CCGGCTCA
86538744 AGGCCTCATA
Statistics
Matches: 184, Mismatches: 41, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
108 17 0.09
109 3 0.02
110 164 0.89
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (109 bp):
CCGGCTCACGATGTTGCTCACACAAGCTGTAGAGAATCCGCAACATATGCAAGATCTCAAGCCAT
CGTTACAGTCTGTATCACAATACATAGTACCTACTAATTAATCC
Found at i:86540764 original size:26 final size:25
Alignment explanation
Indices: 86540735--86540813 Score: 63
Period size: 26 Copynumber: 3.0 Consensus size: 25
86540725 TAATAGTAAT
86540735 ATAAATAATAATAGTATAAAATGATA
1 ATAAATAATAAT-GTATAAAATGATA
* *
86540761 ATAATTCAT-ATGGTATTAAACATGATA
1 ATAAATAATAAT-GTA-TAAA-ATGATA
*
86540788 ATAATAGTAATAATGTA-AATATGATA
1 ATAA-A-TAATAATGTATAAAATGATA
86540814 TAGTAGGGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
25 5 0.12
26 17 0.40
27 12 0.29
29 6 0.14
30 2 0.05
ACGTcount: A:0.53, C:0.03, G:0.10, T:0.34
Consensus pattern (25 bp):
ATAAATAATAATGTATAAAATGATA
Found at i:86540904 original size:18 final size:18
Alignment explanation
Indices: 86540878--86540915 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
86540868 ATATTTATTG
*
86540878 AAAACAATAA-TAATATAT
1 AAAAAAATAACTAATA-AT
86540896 AAAAAAATAACTAATAAT
1 AAAAAAATAACTAATAAT
86540914 AA
1 AA
86540916 CGATATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAAAAATAACTAATAAT
Found at i:86541332 original size:14 final size:13
Alignment explanation
Indices: 86541315--86541356 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
86541305 AATGTGATAT
86541315 TAAAAATATATACA
1 TAAAAATATATA-A
86541329 TAAAAATATAATAA
1 TAAAAATAT-ATAA
*
86541343 -AAAAATATAAAA
1 TAAAAATATATAA
86541355 TA
1 TA
86541357 TATACATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 3 0.12
13 9 0.36
14 10 0.40
15 3 0.12
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (13 bp):
TAAAAATATATAA
Found at i:86541345 original size:50 final size:49
Alignment explanation
Indices: 86541208--86541350 Score: 137
Period size: 50 Copynumber: 2.8 Consensus size: 49
86541198 AATAGTATTG
* *
86541208 AGTATTAAAAGTATATATATATATAATATAGACAAAAATATATGCATAATGT
1 AGTATTAAAAGTATATACATA-ATAATATA-A-AAAAATATATGAATAATGT
* * *
86541260 AGTATTGAAAGTATTTACATGGGATAATAT-AAAAAATATATGAATAATGT
1 AGTATTAAAAGTATATACAT--AATAATATAAAAAAATATATGAATAATGT
* * *
86541310 -GATATTAAAAATATATACATAAAAATATAATAAAAAAATAT
1 AG-TATTAAAAGTATATACATAATAATATAA-AAAAATATAT
86541351 AAAATATATA
Statistics
Matches: 75, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
48 6 0.08
49 2 0.03
50 42 0.56
51 1 0.01
52 17 0.23
53 7 0.09
ACGTcount: A:0.55, C:0.03, G:0.10, T:0.33
Consensus pattern (49 bp):
AGTATTAAAAGTATATACATAATAATATAAAAAAATATATGAATAATGT
Found at i:86541346 original size:13 final size:15
Alignment explanation
Indices: 86541315--86541352 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
86541305 AATGTGATAT
86541315 TAAAAATAT-ATACA
1 TAAAAATATAATACA
86541329 TAAAAATATAATA-A
1 TAAAAATATAATACA
86541343 -AAAAATATAA
1 TAAAAATATAA
86541353 AATATATACA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 10 0.43
14 10 0.43
15 3 0.13
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATAATACA
Found at i:86541378 original size:34 final size:35
Alignment explanation
Indices: 86541317--86541386 Score: 99
Period size: 34 Copynumber: 2.0 Consensus size: 35
86541307 TGTGATATTA
86541317 AAAATATATACATAAAAATATAAT-AAAAAAATAT
1 AAAATATATACATAAAAATATAATAAAAAAAATAT
* *
86541351 AAAATATATACAT-AATATAGTATTAAAAAAAATAT
1 AAAATATATACATAAAAATA-TAATAAAAAAAATAT
86541386 A
1 A
86541387 TATAATACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
33 5 0.16
34 16 0.50
35 11 0.34
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (35 bp):
AAAATATATACATAAAAATATAATAAAAAAAATAT
Found at i:86541503 original size:23 final size:23
Alignment explanation
Indices: 86541458--86541503 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
86541448 AATACTTCAT
* *
86541458 AAATATATACATATATATGTTAA
1 AAATAAATACATATATATATTAA
86541481 AAATAAATACATAT-TAATATTAA
1 AAATAAATACATATAT-ATATTAA
86541504 GATGATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATAAATACATATATATATTAA
Found at i:86543064 original size:37 final size:37
Alignment explanation
Indices: 86543014--86543092 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
86543004 TTATTACGAA
* * *
86543014 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
86543051 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
86543088 GTCTT
1 GTCTT
86543093 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:86543289 original size:47 final size:47
Alignment explanation
Indices: 86543211--86543621 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
86543201 CCCTTCGGGA
* * * * * *
86543211 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
86543258 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86543305 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86543352 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86543399 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86543446 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86543493 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86543540 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86543587 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
86543622 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86544783 original size:18 final size:18
Alignment explanation
Indices: 86544760--86544801 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
86544750 CATATGCATT
86544760 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
86544778 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
86544796 TTTAAT
1 TTTAAT
86544802 ACAATTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (18 bp):
TTTAATCACATCAAGCAA
Found at i:86545631 original size:28 final size:30
Alignment explanation
Indices: 86545582--86545637 Score: 80
Period size: 28 Copynumber: 1.9 Consensus size: 30
86545572 TTGGCTTTCG
86545582 CAGGTGCAAGTGGAGCAAGTGGAGGTGCTA
1 CAGGTGCAAGTGGAGCAAGTGGAGGTGCTA
* *
86545612 CAGG-GCAA-TGGAGCAGGTGGCGGTGC
1 CAGGTGCAAGTGGAGCAAGTGGAGGTGC
86545638 AAAGGCGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 16 0.67
29 4 0.17
30 4 0.17
ACGTcount: A:0.23, C:0.16, G:0.46, T:0.14
Consensus pattern (30 bp):
CAGGTGCAAGTGGAGCAAGTGGAGGTGCTA
Found at i:86546254 original size:87 final size:87
Alignment explanation
Indices: 86546036--86546460 Score: 586
Period size: 87 Copynumber: 4.9 Consensus size: 87
86546026 TTATAGATTC
* * ** * * *
86546036 CAGCCTGTTACCCTACTGTTTAGGGGGTTAAGGCTTACCGTCTTCGATCTG-CTCCACTACTGCT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCC-CTACTGCT
* *
86546100 TAGGGAGACAAGATCTGT-AATT
65 TAGGGGGATAAGATCTGTAAATT
* * ** *
86546122 CAACCTGTTTCCCTACTGCTTAGGGGTTTAAGGCTTATCGCCTTCGTTCTGTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
*
86546187 AGGGTGATAAGATCTGTAAATT
66 AGGGGGATAAGATCTGTAAATT
* * **
86546209 CATCCTGTTACCCTACTGCTTAGTGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
*
86546274 -GGGGGTTAAGATCTGTAAATT
66 AGGGGGATAAGATCTGTAAATT
*
86546295 CAGCTTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
*
86546360 AGGGGGTTAAGATCTGTAAATT
66 AGGGGGATAAGATCTGTAAATT
* *
86546382 TAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTGCCTTCGATCTGTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
* *
86546447 AGGAGGTTAAGATC
66 AGGGGGATAAGATC
86546461 CATCACCTTC
Statistics
Matches: 307, Mismatches: 29, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
86 147 0.48
87 160 0.52
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (87 bp):
CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTT
AGGGGGATAAGATCTGTAAATT
Found at i:86546328 original size:173 final size:173
Alignment explanation
Indices: 86546036--86546460 Score: 602
Period size: 173 Copynumber: 2.5 Consensus size: 173
86546026 TTATAGATTC
* * ** * *
86546036 CAGCCTGTTACCCTACTGTTTAGGGGGTTAAGGCTTACCGTCTTCGATCTG-CTCCACTACTGCT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCC-CTACTGCT
* ** * **
86546100 TAGGGAGACAAGATCTGTAATTCAACCTGTTTCCCTACTGCTTAGGGGTTTAAGGCTTATCGCCT
65 TAGGGGGTTAAGATCTGTAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCT
* *
86546165 TCGTTCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATT
130 TCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTGTAAATT
* * *
86546209 CATCCTGTTACCCTACTGCTTAGTGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGCTT
* *
86546274 -GGGGGTTAAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCT
66 AGGGGGTTAAGATCTGT-AATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCT
*
86546338 TCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATT
130 TCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTGTAAATT
* * *
86546382 TAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTGCCTTCGATCTGTTTCCCTACTGCTT
1 CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGCTT
*
86546447 AGGAGGTTAAGATC
66 AGGGGGTTAAGATC
86546461 CATCACCTTC
Statistics
Matches: 222, Mismatches: 27, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
172 13 0.06
173 194 0.87
174 15 0.07
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (173 bp):
CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGCTT
AGGGGGTTAAGATCTGTAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTT
CGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTGTAAATT
Found at i:86546470 original size:131 final size:129
Alignment explanation
Indices: 86546077--86546591 Score: 511
Period size: 131 Copynumber: 4.0 Consensus size: 129
86546067 GGCTTACCGT
* * ** * * *
86546077 CTTCGATCTG-CTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCAACCTGTTTCCCTACTGC
1 CTTCGATCTGTTTCC-CTACTGCTTAGGGGGTTAAGATCTGTAATTTAGCCTGTTACCCTACTGC
** * * **
86546141 TTAGGGGTTTAAGGCTTATCGCCTTCGTTCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGT-A
65 TTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGG-GTTAAGATCCATCA
*
86546205 A
129 C
* * * * ** ** * * * *
86546206 ATTC-ATCCTGTTACCCTACTGCTTAGTGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACT
1 CTTCGAT-CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAT-TTAG-CCTGTTACCCTACT
* ** ** *** * * **
86546270 GCTT-GGGGGTTAAGATCTGT-AAATTC-AGCTTGTTACCCTACTGCTTAGGGGTTTAAGGCCCA
63 GCTTAGGGGTTTAAGGCCCATCGCCTTCGATC-TGTTTCCCTACTGCTTAGGGG-TTAAGATCCA
*
86546332 TCGC
126 TCAC
86546336 CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGC
1 CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AATTTAGCCTGTTACCCTACTGC
*
86546401 TTAGGGGTTTAAGGCCCATTGCCTTCGATCTGTTTCCCTACTGCTTAGGAGGTTAAGATCCATCA
65 TTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG-GGTTAAGATCCATCA
86546466 C
129 C
* *
86546467 CTTCGATTTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGC
1 CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AATTTAGCCTGTTACCCTACTGC
86546532 TTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATC
65 TTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTA-GGGGTTAAGATC
86546592 TGTAAATTTA
Statistics
Matches: 309, Mismatches: 63, Indels: 26
0.78 0.16 0.07
Matches are distributed among these distances:
128 4 0.01
129 69 0.22
130 58 0.19
131 172 0.56
132 6 0.02
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (129 bp):
CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAATTTAGCCTGTTACCCTACTGCT
TAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGTTAAGATCCATCAC
Found at i:86546521 original size:87 final size:87
Alignment explanation
Indices: 86546430--86546842 Score: 519
Period size: 87 Copynumber: 4.7 Consensus size: 87
86546420 TGCCTTCGAT
* ** * * *
86546430 CTGTTTCCCTACTGCTTAGGAGG-TTAAGATCCATCACCTTCGATTTGTTTCCCTACTACTTAGG
1 CTGTTACCCTACTGCTTAGG-GGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
86546494 GGGTTAAGATCTGTAAATTTAGC
65 GGGTTAAGATCTGTAAATTTAGC
86546517 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGG
86546582 GGTTAAGATCTGTAAATTTAGC
66 GGTTAAGATCTGTAAATTTAGC
* *
86546604 TTGTTACCCTGCTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGG
* *
86546669 GGTTAAGATCTGTGAATTCAGC
66 GGTTAAGATCTGTAAATTTAGC
* * * * * * * *
86546691 CTGTTACCCTACTCCTTAGGGGTTTAAGGCTCTTTGTCTTCGATTTG-CTCTACTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTC-CCTACTGCTTAGG
* **
86546755 GAGACAAGATCTGTAAATTTAGC
65 GGGTTAAGATCTGTAAATTTAGC
* * * ** *
86546778 CTGTTACCCTACTACTT-GTGGGGTTAAGGCCCTTCGTTTTCGATCTG-CTCCACTACTGCTTAG
1 CTGTTACCCTACTGCTTAG-GGGTTTAAGGCCCATCGCCTTCGATCTGTTTCC-CTACTGCTTAG
86546841 GG
64 GG
86546843 AGACAAAATT
Statistics
Matches: 290, Mismatches: 32, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
86 5 0.02
87 285 0.98
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (87 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGG
GGTTAAGATCTGTAAATTTAGC
Found at i:86546550 original size:218 final size:216
Alignment explanation
Indices: 86546213--86546678 Score: 788
Period size: 218 Copynumber: 2.1 Consensus size: 216
86546203 TAAATTCATC
* * ** * *
86546213 CTGTTACCCTACTGCTTAGTGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTGGGG
1 CTGTTTCCCTACTGCTTAG-GGGTTAAGATCCATCACCTTCGATCTGTTTCCCTACTACTTGGGG
*
86546278 GTTAAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGAT
65 GTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGAT
86546343 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGG
130 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGG
*
86546408 TTTAAGGCCCATTGCCTTCGAT
195 TTTAAGGCCCATCGCCTTCGAT
*
86546430 CTGTTTCCCTACTGCTTAGGAGGTTAAGATCCATCACCTTCGATTTGTTTCCCTACTACTTAGGG
1 CTGTTTCCCTACTGCTTAGG-GGTTAAGATCCATCACCTTCGATCTGTTTCCCTACTACTT-GGG
*
86546495 GGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGA
64 GGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGA
* *
86546560 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCTTGTTACCCTGCTGCTTAGGG
129 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGG
86546625 GTTTAAGGCCCATCGCCTTCGAT
194 GTTTAAGGCCCATCGCCTTCGAT
86546648 CTGTTTCCCTACTGCTTAGGGGGTTAAGATC
1 CTGTTTCCCTACTGCTTA-GGGGTTAAGATC
86546679 TGTGAATTCA
Statistics
Matches: 234, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
216 1 0.00
217 52 0.22
218 179 0.76
219 2 0.01
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.35
Consensus pattern (216 bp):
CTGTTTCCCTACTGCTTAGGGGTTAAGATCCATCACCTTCGATCTGTTTCCCTACTACTTGGGGG
TTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATC
TGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGT
TTAAGGCCCATCGCCTTCGAT
Found at i:86546652 original size:131 final size:130
Alignment explanation
Indices: 86546125--86546675 Score: 435
Period size: 131 Copynumber: 4.2 Consensus size: 130
86546115 TGTAATTCAA
** *
86546125 CCTGTTTCCCTACTGCTTAGGGGTTTAAGGCTTATCGCCTTCGTTCTGTTTCCCTACTGCTTAGG
1 CCTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
* * ** * * * * * * * *
86546190 GTGATAAGATCTGTAAA-TTCATCCTGTTACCCTACTGCTTAGTGGTTTAAGGCCCATCATCTTC
66 GGGTTAAGATCCATAAACTT-AGCTTGTTACCCTACTGCTTAGGGGGTTAAGACCCATAAACTTA
86546254 G
130 G
* * ** ** *** * *
86546255 ATCTGTTTCCCTACTGCTT-GGGGGTTAAGATCTGT-AAATTC-AGCTTGTTACCCTACTGCTTA
1 -CCTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATC-TGTTTCCCTACTGCTTA
* ** *** * * * * ** *
86546317 GGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATT
64 GGGGGTTAAGATCCATAAACTTAGCT-TGTTACCCTACTGCTTAGGGGGTTAAGACCCATAAACT
86546382 TAG
128 TAG
* *
86546385 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTGCCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
* * * * * * * * ** *
86546450 AGGTTAAGATCCATCACCTTCGATTTGTTTCCCTACTACTTAGGGGGTTAAGATCTGTAAATTTA
66 GGGTTAAGATCCATAAACTTAG-CTTGTTACCCTACTGCTTAGGGGGTTAAGACCCATAAACTTA
86546515 G
130 G
*
86546516 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
** * * * * *** *
86546581 GGGTTAAGATCTGTAAATTTAGCTTGTTACCCTGCTGCTTAGGGGTTTAAGGCCCATCGCCTTCG
66 GGGTTAAGATCCATAAACTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAGACCCATAAACTTAG
* *
86546646 ATCTGTTTCCCTACTGCTTAGGGGGTTAAG
1 -CCTGTTTCCCTACTGCTTAGGGGTTTAAG
86546676 ATCTGTGAAT
Statistics
Matches: 331, Mismatches: 81, Indels: 16
0.77 0.19 0.04
Matches are distributed among these distances:
128 1 0.00
129 44 0.13
130 83 0.25
131 200 0.60
132 3 0.01
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (130 bp):
CCTGTTTCCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
GGGTTAAGATCCATAAACTTAGCTTGTTACCCTACTGCTTAGGGGGTTAAGACCCATAAACTTAG
Found at i:86550435 original size:21 final size:21
Alignment explanation
Indices: 86550405--86550446 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
86550395 GCGTGGTGGC
86550405 CGGCAGCGGCGCCAGCGGCAG
1 CGGCAGCGGCGCCAGCGGCAG
*
86550426 CGGCATCGGCGCCAGCGGCAG
1 CGGCAGCGGCGCCAGCGGCAG
86550447 AGCCCACGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.14, C:0.38, G:0.45, T:0.02
Consensus pattern (21 bp):
CGGCAGCGGCGCCAGCGGCAG
Found at i:86551222 original size:24 final size:24
Alignment explanation
Indices: 86551153--86551232 Score: 65
Period size: 24 Copynumber: 3.2 Consensus size: 24
86551143 ATCATATCAT
*
86551153 TATTATTTTTCATGTACACATTATTTA
1 TATTATTTTT-ATG-AC-TATTATTTA
*
86551180 TATTATTTTTATGATTATTATTGTA
1 TATTATTTTTATGACTATTATT-TA
* *
86551205 T-TTATTTTTACT-ACTATTACTAA
1 TATTATTTTTA-TGACTATTATTTA
86551228 TATTA
1 TATTA
86551233 GTATTATAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
23 2 0.04
24 25 0.56
25 5 0.11
26 3 0.07
27 10 0.22
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (24 bp):
TATTATTTTTATGACTATTATTTA
Found at i:86551461 original size:11 final size:10
Alignment explanation
Indices: 86551445--86551496 Score: 54
Period size: 11 Copynumber: 5.1 Consensus size: 10
86551435 TTTTTAATAC
86551445 TATATTATGTA
1 TATATTAT-TA
86551456 TATATT-TTA
1 TATATTATTA
86551465 TATATATATTA
1 TATAT-TATTA
86551476 T-TATTATTA
1 TATATTATTA
*
86551485 TTATATTTTTA
1 -TATATTATTA
86551496 T
1 T
86551497 GTATATATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
9 12 0.33
10 7 0.19
11 17 0.47
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (10 bp):
TATATTATTA
Found at i:86551463 original size:25 final size:24
Alignment explanation
Indices: 86551317--86551610 Score: 130
Period size: 25 Copynumber: 12.2 Consensus size: 24
86551307 TATCATCATC
* *
86551317 TTAATAT-TAATATGTATTTATTT
1 TTAATATATATTATGTATATATTT
*
86551340 TTAACATATA-TATGTATATATTT
1 TTAATATATATTATGTATATATTT
* *** *
86551363 ATGAAGTAT-TATTAAAAAT-TGTTT
1 -TTAA-TATATATTATGTATATATTT
86551387 TGTAATAT-TATTAT-TATTATTATTT
1 T-TAATATATATTATGTA-TA-TATTT
* * * *
86551412 CTAATGTGTATGTATTATATATATTT
1 TTAATATATAT-TA-TGTATATATTT
86551438 TTAATACTATATTATGTATATA-TT
1 TTAATA-TATATTATGTATATATTT
*
86551462 TTATATATATATTAT-TAT-TATTA
1 TTA-ATATATATTATGTATATATTT
*
86551485 TT-ATAT-TTTTATGTATATATTT
1 TTAATATATATTATGTATATATTT
*
86551507 TTAATATCACATTAT-TCATATATTT
1 TTAATAT-ATATTATGT-ATATATTT
* * * *
86551532 TTTATAT-TATCCCATGTAAATACTT
1 TTAATATATAT--TATGTATATATTT
* * *
86551557 TCAATAGTACATTATGCATATATTT
1 TTAATA-TATATTATGTATATATTT
* * * *
86551582 TT-GTCTATATTATATATATACTT
1 TTAATATATATTATGTATATATTT
86551605 TTAATA
1 TTAATA
86551611 CTCAATACTA
Statistics
Matches: 200, Mismatches: 44, Indels: 53
0.67 0.15 0.18
Matches are distributed among these distances:
20 5 0.03
21 7 0.04
22 9 0.05
23 56 0.28
24 34 0.17
25 63 0.31
26 15 0.08
27 9 0.05
28 2 0.01
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (24 bp):
TTAATATATATTATGTATATATTT
Found at i:86551506 original size:14 final size:14
Alignment explanation
Indices: 86551449--86551509 Score: 70
Period size: 14 Copynumber: 4.2 Consensus size: 14
86551439 TAATACTATA
86551449 TTATGTATATATTT
1 TTATGTATATATTT
* *
86551463 TATATATATATTATTA
1 T-TATGTATA-TATTT
86551479 TTAT-TATTATATTT
1 TTATGTA-TATATTT
86551493 TTATGTATATATTT
1 TTATGTATATATTT
86551507 TTA
1 TTA
86551510 ATATCACATT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 21 0.52
15 14 0.35
16 5 0.12
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (14 bp):
TTATGTATATATTT
Found at i:86551908 original size:24 final size:24
Alignment explanation
Indices: 86551831--86551910 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 24
86551821 AGTATGTATA
*
86551831 TATTATGTATATATTTTTTATTTCTAT
1 TATTATGTATATA--TTTTATATC-AT
**
86551858 TATTGCGTATATATTTTA-ATACA-
1 TATTATGTATATATTTTATAT-CAT
86551881 TATT-TGTATATATTTATATATCAT
1 TATTATGTATATATTT-TATATCAT
86551905 TATTAT
1 TATTAT
86551911 TAGTTATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
22 10 0.23
23 8 0.18
24 8 0.18
25 7 0.16
27 11 0.25
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (24 bp):
TATTATGTATATATTTTATATCAT
Found at i:86552132 original size:14 final size:15
Alignment explanation
Indices: 86552113--86552142 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
86552103 TTCGTTATCA
86552113 TTGTCAT-TTTTATT
1 TTGTCATGTTTTATT
86552127 TTGTCATGTTTTATT
1 TTGTCATGTTTTATT
86552142 T
1 T
86552143 ATTTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.13, C:0.07, G:0.10, T:0.70
Consensus pattern (15 bp):
TTGTCATGTTTTATT
Found at i:86552342 original size:22 final size:21
Alignment explanation
Indices: 86552317--86552369 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
86552307 TAATTTGCTT
*
86552317 TTATGTTTTACTATAAATCACG
1 TTATATTTT-CTATAAATCACG
* *
86552339 TTATATATTTTTGTAAATCACG
1 TTATAT-TTTCTATAAATCACG
86552361 TTATATTTT
1 TTATATTTT
86552370 TTTTACTCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.11
22 21 0.78
23 3 0.11
ACGTcount: A:0.30, C:0.09, G:0.08, T:0.53
Consensus pattern (21 bp):
TTATATTTTCTATAAATCACG
Found at i:86552371 original size:22 final size:22
Alignment explanation
Indices: 86552330--86552372 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
86552320 TGTTTTACTA
86552330 TAAATCACGTTATATATTTTTG
1 TAAATCACGTTATATATTTTTG
*
86552352 TAAATCACGTTATATTTTTTT
1 TAAATCACGTTATATATTTTT
86552373 TACTCAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.09, G:0.07, T:0.53
Consensus pattern (22 bp):
TAAATCACGTTATATATTTTTG
Found at i:86556336 original size:25 final size:26
Alignment explanation
Indices: 86556308--86556392 Score: 86
Period size: 25 Copynumber: 3.4 Consensus size: 26
86556298 CACACTAACG
86556308 GGAAGCTC-TGTCGAGCCATATAATA
1 GGAAGCTCATGTCGAGCCATATAATA
* * *
86556333 GGAAGCTCATGT-GAGTCATGTAATG
1 GGAAGCTCATGTCGAGCCATATAATA
** * *
86556358 GGAAGCTCAT-TCGAGCTGTGTAATG
1 GGAAGCTCATGTCGAGCCATATAATA
86556383 GGAAGCTCAT
1 GGAAGCTCAT
86556393 AAGAGCCATA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.02
25 48 0.92
26 3 0.06
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26
Consensus pattern (26 bp):
GGAAGCTCATGTCGAGCCATATAATA
Found at i:86556398 original size:25 final size:25
Alignment explanation
Indices: 86556351--86556398 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
86556341 ATGTGAGTCA
**
86556351 TGTAATGGGAAGCTCATTCGAGCTG
1 TGTAATGGGAAGCTCATAAGAGCTG
86556376 TGTAATGGGAAGCTCATAAGAGC
1 TGTAATGGGAAGCTCATAAGAGC
86556399 CATAATCAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (25 bp):
TGTAATGGGAAGCTCATAAGAGCTG
Found at i:86566654 original size:43 final size:43
Alignment explanation
Indices: 86566600--86566686 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
86566590 AAATTATATG
*
86566600 ATCTGAACTCATTGAGTTGGTCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTAAGTTGGTCTGAGTTCATGATATATGTGAC
* *
86566643 ATCTGAGCTCATTAAGTTGGTCTGAGTTCATGATGTATGTGAC
1 ATCTGAACTCATTAAGTTGGTCTGAGTTCATGATATATGTGAC
86566686 A
1 A
86566687 CATGTAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.37
Consensus pattern (43 bp):
ATCTGAACTCATTAAGTTGGTCTGAGTTCATGATATATGTGAC
Found at i:86577409 original size:17 final size:17
Alignment explanation
Indices: 86577389--86577439 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
86577379 AGTGACTTTG
*
86577389 CAACTTTGGTGAGCTCA
1 CAACTTTGATGAGCTCA
*
86577406 CAACTTTGATGAGCTTA
1 CAACTTTGATGAGCTCA
*
86577423 CAGA-TTTGTTGAGCTCA
1 CA-ACTTTGATGAGCTCA
86577440 TATTTTTTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 28 0.97
18 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (17 bp):
CAACTTTGATGAGCTCA
Found at i:86577507 original size:19 final size:18
Alignment explanation
Indices: 86577483--86577525 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
86577473 GCACATCTAA
* *
86577483 TGAGCTGGCATTTTTTTGG
1 TGAGCTGGCA-TCTTTGGG
*
86577502 TGAGCTTGCATCTTTGGG
1 TGAGCTGGCATCTTTGGG
86577520 TGAGCT
1 TGAGCT
86577526 CAAAGATGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.12, C:0.14, G:0.33, T:0.42
Consensus pattern (18 bp):
TGAGCTGGCATCTTTGGG
Found at i:86590116 original size:13 final size:13
Alignment explanation
Indices: 86590092--86590150 Score: 59
Period size: 13 Copynumber: 4.6 Consensus size: 13
86590082 TAAATTTTTC
86590092 CAAAA-CACTTCT
1 CAAAAGCACTTCT
*
86590104 CAAAAGTACTTCT
1 CAAAAGCACTTCT
*
86590117 CAAAAGCACTTTT
1 CAAAAGCACTTCT
* *
86590130 ACACAA-CACTTTT
1 -CAAAAGCACTTCT
86590143 CAAAAGCA
1 CAAAAGCA
86590151 ATGAAGAACT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
12 9 0.23
13 26 0.67
14 4 0.10
ACGTcount: A:0.42, C:0.27, G:0.05, T:0.25
Consensus pattern (13 bp):
CAAAAGCACTTCT
Found at i:86592410 original size:10 final size:10
Alignment explanation
Indices: 86592395--86592431 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
86592385 ATATTAATAA
86592395 TTAATTAATC
1 TTAATTAATC
86592405 TTAATTAA-C
1 TTAATTAATC
86592414 TTAATTAAT-
1 TTAATTAATC
86592423 TATAATTAA
1 T-TAATTAA
86592432 CTAACGTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 10 0.40
10 15 0.60
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (10 bp):
TTAATTAATC
Found at i:86592419 original size:19 final size:19
Alignment explanation
Indices: 86592395--86592433 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
86592385 ATATTAATAA
86592395 TTAATTAATCT-TAATTAAC
1 TTAATTAAT-TATAATTAAC
86592414 TTAATTAATTATAATTAAC
1 TTAATTAATTATAATTAAC
86592433 T
1 T
86592434 AACGTTAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 1 0.05
19 18 0.95
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (19 bp):
TTAATTAATTATAATTAAC
Found at i:86593726 original size:19 final size:19
Alignment explanation
Indices: 86593686--86593728 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
86593676 ATAATAATAT
*
86593686 TTTAAAAATTATTATTTTAA
1 TTTAAAAA-TATTATTTAAA
86593706 TTTAAAAA-ATTATTTCAAA
1 TTTAAAAATATTATTT-AAA
86593725 TTTA
1 TTTA
86593729 TCTTATTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 7 0.33
19 6 0.29
20 8 0.38
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
TTTAAAAATATTATTTAAA
Found at i:86594130 original size:15 final size:16
Alignment explanation
Indices: 86594105--86594135 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
86594095 TTATAAAAAA
86594105 AATTATTTTAATTTTT
1 AATTATTTTAATTTTT
86594121 AATT-TTTTAATTTTT
1 AATTATTTTAATTTTT
86594136 TAAAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
AATTATTTTAATTTTT
Found at i:86594142 original size:10 final size:8
Alignment explanation
Indices: 86594105--86594152 Score: 53
Period size: 8 Copynumber: 6.0 Consensus size: 8
86594095 TTATAAAAAA
86594105 AATTATTTT
1 AATT-TTTT
86594114 AA-TTTTT
1 AATTTTTT
86594121 AATTTTTT
1 AATTTTTT
86594129 AATTTTTT
1 AATTTTTT
** *
86594137 AAAATTTA
1 AATTTTTT
86594145 AATTTTTT
1 AATTTTTT
86594153 GTCAAGTTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
7 6 0.19
8 24 0.75
9 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (8 bp):
AATTTTTT
Found at i:86595761 original size:42 final size:42
Alignment explanation
Indices: 86595699--86595846 Score: 122
Period size: 42 Copynumber: 3.5 Consensus size: 42
86595689 GATGAGAATA
* *
86595699 CGTGTAAGACCATATCTGGGATATGACATC-AGTATGATATTAT
1 CGTGTAAGACCATATCTGGGACATGACATCGA-TATGAAATT-T
* * * *
86595742 -GTGTAAGACTATGTTTGGGACATGGCATCGATATGAAATTT
1 CGTGTAAGACCATATCTGGGACATGACATCGATATGAAATTT
* * * * * *
86595783 CGTGTAAGACCATAGCT-AGACTATTGGCATTGATATGAGATTA
1 CGTGTAAGACCATATCTGGGAC-A-TGACATCGATATGAAATTT
*
86595826 CATGTAAGACCATATCTGGGA
1 CGTGTAAGACCATATCTGGGA
86595847 TATGGCATTG
Statistics
Matches: 83, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
41 4 0.05
42 45 0.54
43 32 0.39
44 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGACATGACATCGATATGAAATTT
Found at i:86603411 original size:94 final size:94
Alignment explanation
Indices: 86603272--86603532 Score: 438
Period size: 94 Copynumber: 2.8 Consensus size: 94
86603262 GTAGCTGATG
* * * * *
86603272 CATGTCCCAGACAT-GTCTTACACTGG-TTTACAT-CTCGAGGTCGATGCATGTCCCAGACATGT
1 CATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGTATGTCCCAGACATGT
86603334 CTTACACTAGCTCTCATCTCAATGTCATTGC
64 CTTACACTAGCTCTCATCTCAATGTCATTGC
86603365 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGTATGTCCCAGACATGTCT
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGTATGTCCCAGACATGTCT
86603430 TACACTAGCTCTCATCTCAATGTCATTGC
66 TACACTAGCTCTCATCTCAATGTCATTGC
86603459 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGTATGTCCCAGACATGTCT
1 CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGTATGTCCCAGACATGTCT
86603524 TACACTAGC
66 TACACTAGC
86603533 ACACAAATGA
Statistics
Matches: 160, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
93 14 0.09
94 143 0.89
95 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (94 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGTATGTCCCAGACATGTCT
TACACTAGCTCTCATCTCAATGTCATTGC
Found at i:86603417 original size:47 final size:45
Alignment explanation
Indices: 86603268--86603529 Score: 252
Period size: 46 Copynumber: 5.6 Consensus size: 45
86603258 TTTTGTAGCT
* * *
86603268 GATGCATGTCCCAGACATGTCTTACACTGG-TTTACAT-CTCGAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GTGG-C
*
86603314 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGT--C
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCA--T-AATGTGGC
86603360 -ATTGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GA-TG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTGG-C
* *
86603408 GATGTATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGT--C
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCA--T-AATGTGGC
86603454 -ATTGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GA-TG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATAATGTGG-C
*
86603502 GATGTATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
86603530 AGCACACAAA
Statistics
Matches: 184, Mismatches: 10, Indels: 44
0.77 0.04 0.18
Matches are distributed among these distances:
45 12 0.07
46 66 0.36
47 55 0.30
48 42 0.23
49 8 0.04
50 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.31
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGC
Found at i:86605074 original size:17 final size:17
Alignment explanation
Indices: 86605052--86605084 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
86605042 ATTTGATTAC
86605052 ATGATAAGTTTATTTGA
1 ATGATAAGTTTATTTGA
86605069 ATGATAAGTTTATTTG
1 ATGATAAGTTTATTTG
86605085 TATTTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (17 bp):
ATGATAAGTTTATTTGA
Found at i:86605366 original size:42 final size:42
Alignment explanation
Indices: 86605261--86605425 Score: 181
Period size: 43 Copynumber: 3.9 Consensus size: 42
86605251 TGGTGGTCTC
* * * * *
86605261 ATACAATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAA
* * *
86605303 ATATCGATGCTACTATCCCAGACAG-GGTCTTACACGAAATCAA
1 ATA-CGATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCAA
* *
86605346 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAATTATA
1 ATACGATGCCAATGTCCCAGACGTGGTCTTACACG-AAATCA-A
86605390 AGT-CGATGCCAATGTCCCAGACGTGGTCTTACACGA
1 A-TACGATGCCAATGTCCCAGACGTGGTCTTACACGA
86605426 TAACACATAT
Statistics
Matches: 103, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 30 0.29
43 38 0.37
44 34 0.33
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAA
Found at i:86605410 original size:44 final size:42
Alignment explanation
Indices: 86605266--86605424 Score: 169
Period size: 44 Copynumber: 3.7 Consensus size: 42
86605256 GTCTCATACA
* * * *
86605266 ATGCCAACGTCCTAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATC-AA-ATCG
* * * *
86605309 ATGCTACTATCCCAGACAGGGTCTTACACG-AAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAAT-CG
*
86605351 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATTATAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCA-AA-TCG
*
86605395 ATGCCAATGTCCCAGACGTGGTCTTACACG
1 ATGCCAATGTCCCAGACATGGTCTTACACG
86605425 ATAACACATA
Statistics
Matches: 97, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
41 2 0.02
42 30 0.31
43 31 0.32
44 33 0.34
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAATCG
Found at i:86608555 original size:49 final size:49
Alignment explanation
Indices: 86608450--86608630 Score: 128
Period size: 49 Copynumber: 3.8 Consensus size: 49
86608440 GCACATCAAA
*
86608450 GTCGATGCCATGTCCCAGATAGGTCTTACACTAACTTTCACATATCGAG
1 GTCGATGCCATGTCCCAGATAGGTCTTACACTAACTCTCACATATCGAG
* **
86608499 G-CTGATGCCATTTCCCA-AGTAGGTCTTACACTGGCTCTCATC-TATCG-G
1 GTC-GATGCCATGTCCCAGA-TAGGTCTTACACTAACTCTCA-CATATCGAG
** * * * * *
86608547 TGTCGATGCCATGTCTGAGACAGGTCTAACACTGA--CACACA-A-C-AA
1 -GTCGATGCCATGTCCCAGATAGGTCTTACACTAACTCTCACATATCGAG
* * * *
86608592 GTTGACGCCATGTCCCAGACAGGTCTTACACTAGCTCTC
1 GTCGATGCCATGTCCCAGATAGGTCTTACACTAACTCTC
86608631 GTCTCAATGC
Statistics
Matches: 102, Mismatches: 20, Indels: 23
0.70 0.14 0.16
Matches are distributed among these distances:
44 27 0.26
45 1 0.01
46 4 0.04
47 3 0.03
48 3 0.03
49 61 0.60
50 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGATAGGTCTTACACTAACTCTCACATATCGAG
Found at i:86609219 original size:16 final size:18
Alignment explanation
Indices: 86609184--86609224 Score: 59
Period size: 16 Copynumber: 2.3 Consensus size: 18
86609174 TATAGCAACC
86609184 CAAAATTTCCATTATTTTA
1 CAAAATTTCCA-TATTTTA
86609203 CAAAATTTCC-T-TTTTA
1 CAAAATTTCCATATTTTA
86609219 CAAAAT
1 CAAAAT
86609225 GGTCCTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 11 0.50
17 1 0.05
19 10 0.45
ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44
Consensus pattern (18 bp):
CAAAATTTCCATATTTTA
Found at i:86616057 original size:44 final size:43
Alignment explanation
Indices: 86615925--86616083 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 43
86615915 ATCTCGTACA
* * * *
86615925 ATGCCAACGTCCTAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACATAGTCTTACACGTAAATCAAATAT-G
* * *
86615968 ATGCC-ACTGTCCTAAACA-AGGTCTAACACG-AAATCAAATATG
1 ATGCCAAC-GTCCCAGACATA-GTCTTACACGTAAATCAAATATG
86616010 ATGCCAACGTCCCAGACATAGTCTTACACGTAAATCATAAGT-TG
1 ATGCCAACGTCCCAGACATAGTCTTACACGTAAATCA-AA-TATG
** *
86616054 ATGCCAACGTCCCAGATGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATAGTCTTACACG
86616084 ATAACACATA
Statistics
Matches: 97, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
42 25 0.26
43 40 0.41
44 31 0.32
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATAGTCTTACACGTAAATCAAATATG
Found at i:86620943 original size:25 final size:26
Alignment explanation
Indices: 86620898--86620971 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 26
86620888 TTATCCAGGC
*
86620898 TAAATCAGGAAGCTCA-TAAGAGC-TA
1 TAAAT-AGGAAGCTCACAAAGAGCTTA
* * *
86620923 TAAATAGGAAGTTCACAAAGAACTTT
1 TAAATAGGAAGCTCACAAAGAGCTTA
**
86620949 TAAGCAGGAAGCTCACAAAGAGC
1 TAAATAGGAAGCTCACAAAGAGC
86620972 CTATCGGGAA
Statistics
Matches: 39, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
24 9 0.23
25 10 0.26
26 20 0.51
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.19
Consensus pattern (26 bp):
TAAATAGGAAGCTCACAAAGAGCTTA
Found at i:86621390 original size:22 final size:21
Alignment explanation
Indices: 86621364--86621405 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
86621354 AAAATTTATG
*
86621364 CAATTCACACAAATTCAACATT
1 CAATTCAAACAAATT-AACATT
86621386 CAATTCAAACAAATTAACAT
1 CAATTCAAACAAATTAACAT
86621406 ATATAATCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (21 bp):
CAATTCAAACAAATTAACATT
Found at i:86621551 original size:21 final size:21
Alignment explanation
Indices: 86621527--86621569 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
86621517 ATATAAATGA
* *
86621527 ATTTAATTATCAATTTAATTC
1 ATTTAATGATCAATTCAATTC
* *
86621548 ATTTCATGCTCAATTCAATTC
1 ATTTAATGATCAATTCAATTC
86621569 A
1 A
86621570 ATTCACATTC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.02, T:0.47
Consensus pattern (21 bp):
ATTTAATGATCAATTCAATTC
Found at i:86628141 original size:50 final size:50
Alignment explanation
Indices: 86628057--86628228 Score: 209
Period size: 50 Copynumber: 3.4 Consensus size: 50
86628047 ACAACAAATA
* * *
86628057 ATAAATGATAGCTTCGGCTACATTTATCTGATCAAGAACAAGTGAAAGTG
1 ATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAAAGTG
* * * * *
86628107 ATAAGTGATAGTTTCGGCTATACTTATCTAATCAAGGACAAGCGAAAGCG
1 ATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAAAGTG
* * *
86628157 ATACGTGATAGCTTCGGTTACACTTATCTGATCAAGGACAAATGACAAGTG
1 ATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA-AAGTG
* * *
86628208 AAAAGTGGTAGCTTCGACTAC
1 ATAAGTGATAGCTTCGGCTAC
86628229 CTGATCAGTG
Statistics
Matches: 100, Mismatches: 21, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
50 80 0.80
51 20 0.20
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (50 bp):
ATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGAAAGTG
Found at i:86628242 original size:31 final size:31
Alignment explanation
Indices: 86628204--86628383 Score: 243
Period size: 31 Copynumber: 5.8 Consensus size: 31
86628194 ACAAATGACA
86628204 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
* *
86628235 AGTGAAAAGTGGTAGCTTCGACTACCTAATT
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
*
86628266 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
*
86628297 AGTGAAAAGTGGTAGCTTCAACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
** * * * **
86628328 AGTGAAAAACGGTTGCTTTGGCTGTCTGATC
1 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
* *
86628359 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGACTAC
86628384 AAGTGACAAG
Statistics
Matches: 127, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 127 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGACTACCTGATC
Found at i:86628462 original size:47 final size:48
Alignment explanation
Indices: 86628402--86628509 Score: 137
Period size: 47 Copynumber: 2.3 Consensus size: 48
86628392 AGTGATTTCC
* * **
86628402 ATGTAAAATCATATCTGGGATATGGCATCAGAGTGATATGTGCATTTG
1 ATGTAAGACCATATCTGGGATATGGCATCAGAGTGATATGTGCATAAG
* * * *
86628450 -TGTAAGACCATATGTGGGATATGGCATCGGTGTGATATGTGTATAAG
1 ATGTAAGACCATATCTGGGATATGGCATCAGAGTGATATGTGCATAAG
86628497 ATGTAAGACCATA
1 ATGTAAGACCATA
86628510 GCGAGGCTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
47 39 0.76
48 12 0.24
ACGTcount: A:0.31, C:0.10, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTAAGACCATATCTGGGATATGGCATCAGAGTGATATGTGCATAAG
Found at i:86628521 original size:48 final size:47
Alignment explanation
Indices: 86628418--86628524 Score: 126
Period size: 47 Copynumber: 2.3 Consensus size: 47
86628408 AATCATATCT
** *
86628418 GGGATATGGCATCAGAGTGATATGTGCATTTGTGTAAGACCATATGT
1 GGGATATGGCATCAGAGTGATATGTGCATAAGTGTAAGACCATATGC
* * *
86628465 GGGATATGGCATCGGTGTGATATGTGTATAAGATGTAAGACCATA-GC
1 GGGATATGGCATCAGAGTGATATGTGCATAAG-TGTAAGACCATATGC
*
86628512 GAGGCTATGGCAT
1 G-GGATATGGCAT
86628525 TTTAGTAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
47 29 0.57
48 22 0.43
ACGTcount: A:0.28, C:0.11, G:0.32, T:0.29
Consensus pattern (47 bp):
GGGATATGGCATCAGAGTGATATGTGCATAAGTGTAAGACCATATGC
Found at i:86628645 original size:33 final size:33
Alignment explanation
Indices: 86628594--86628683 Score: 146
Period size: 33 Copynumber: 2.7 Consensus size: 33
86628584 GAGAAGAGGT
86628594 AAGACCATAGCTGA-GCTATGGCATTCTAGTGAA
1 AAGACCATAGCT-ATGCTATGGCATTCTAGTGAA
*
86628627 AAGAACATAGCTATGCTATGGCATTCTAGTGAA
1 AAGACCATAGCTATGCTATGGCATTCTAGTGAA
*
86628660 AAGACCATAGCTATGTTATGGCAT
1 AAGACCATAGCTATGCTATGGCAT
86628684 CAGTGATTAT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
32 1 0.02
33 52 0.98
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (33 bp):
AAGACCATAGCTATGCTATGGCATTCTAGTGAA
Found at i:86629473 original size:27 final size:28
Alignment explanation
Indices: 86629443--86629513 Score: 85
Period size: 27 Copynumber: 2.6 Consensus size: 28
86629433 CTACAGGGGC
* *
86629443 ATTTCGGTCATTCTATCC-TATGTGGGT
1 ATTTCGGTCATTTTATCCTTATGAGGGT
86629470 ATTT-GGATCATTTTA-CCTTATGAGGGT
1 ATTTCGG-TCATTTTATCCTTATGAGGGT
*
86629497 ATTTCGGTTATTTTATC
1 ATTTCGGTCATTTTATC
86629514 ACATAAGGGA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
26 4 0.11
27 30 0.81
28 3 0.08
ACGTcount: A:0.18, C:0.14, G:0.20, T:0.48
Consensus pattern (28 bp):
ATTTCGGTCATTTTATCCTTATGAGGGT
Found at i:86629536 original size:27 final size:27
Alignment explanation
Indices: 86629506--86629603 Score: 160
Period size: 27 Copynumber: 3.6 Consensus size: 27
86629496 TATTTCGGTT
*
86629506 ATTTTATCACATAAGGGAAAAATCATC
1 ATTTTATCACATAAGGGCAAAATCATC
86629533 ATTTTATCACATAAGGGCAAAATCATC
1 ATTTTATCACATAAGGGCAAAATCATC
* *
86629560 ATTTTATCACATAAAGGCAAAATCGTC
1 ATTTTATCACATAAGGGCAAAATCATC
*
86629587 ATTTTATCACATGAGGG
1 ATTTTATCACATAAGGG
86629604 TTCAGGTACG
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (27 bp):
ATTTTATCACATAAGGGCAAAATCATC
Found at i:86632198 original size:43 final size:43
Alignment explanation
Indices: 86632150--86632307 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 43
86632140 CAATGTCATA
* * *
86632150 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGATATGGTCTTACACGTAATCACATATCGATGCCAATG
* * *
86632193 TCCCAGATAGGGTCTTACACGAAATCATATAAT-GATGCCAATG
1 TCCCAGATATGGTCTTACACGTAATCACAT-ATCGATGCCAATG
* * * *
86632236 TCTCAGAAATGGTCTTACACGTAAGCACA-ATACAATGCCAATG
1 TCCCAGATATGGTCTTACACGTAATCACATAT-CGATGCCAATG
* *
86632279 TCCCAGACATGGTCTTACATGTAATCACA
1 TCCCAGATATGGTCTTACACGTAATCACA
86632308 GCTCGGTAAC
Statistics
Matches: 95, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.02
43 91 0.96
44 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
TCCCAGATATGGTCTTACACGTAATCACATATCGATGCCAATG
Found at i:86647673 original size:23 final size:24
Alignment explanation
Indices: 86647646--86647698 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
86647636 GCCATATACC
* * *
86647646 AGGAAGCTTATCTGAGCTA-AATT
1 AGGAAGCTCATCAGAGCTATAAAT
86647669 AGGAAGCTCATCAGAGCTATAAAT
1 AGGAAGCTCATCAGAGCTATAAAT
86647693 AGGAAG
1 AGGAAG
86647699 TTCACAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 17 0.65
24 9 0.35
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.23
Consensus pattern (24 bp):
AGGAAGCTCATCAGAGCTATAAAT
Found at i:86648166 original size:22 final size:21
Alignment explanation
Indices: 86648141--86648182 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
86648131 AACACTTATA
*
86648141 CAATTCACACAAATTCAACATT
1 CAATTCAAACAAATT-AACATT
*
86648163 CAATTCAAATAAATTAACAT
1 CAATTCAAACAAATTAACAT
86648183 ATATAATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (21 bp):
CAATTCAAACAAATTAACATT
Found at i:86650318 original size:48 final size:48
Alignment explanation
Indices: 86650254--86650403 Score: 203
Period size: 48 Copynumber: 3.1 Consensus size: 48
86650244 CTGGGCTAAC
* *
86650254 GGCATCGATATGTGATCCCATGTAAGACCATGCCTTAGACATGGCATT
1 GGCATCGATATGTGATCCCATGTAAGACCATACCTGAGACATGGCATT
* * * *
86650302 GGCATCGATCTATGATCCCATGTAAGACCATATCTGGGACATGGCATT
1 GGCATCGATATGTGATCCCATGTAAGACCATACCTGAGACATGGCATT
* * *
86650350 GGCATCGATATGTGATCCCATGTAAAACCATATCTGGGATC-TGGCATT
1 GGCATCGATATGTGATCCCATGTAAGACCATACCTGAGA-CATGGCATT
86650398 GGCATC
1 GGCATC
86650404 CTACCATGTG
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
48 91 0.99
49 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (48 bp):
GGCATCGATATGTGATCCCATGTAAGACCATACCTGAGACATGGCATT
Found at i:86650326 original size:91 final size:94
Alignment explanation
Indices: 86650170--86650403 Score: 253
Period size: 91 Copynumber: 2.5 Consensus size: 94
86650160 TGTTAGGGTT
* * * * ** *
86650170 ATATGCGATCCCATGTAAGACCATGTCTAGGACATGTCTTTGGCATCGATATATAATTTCGTGTA
1 ATATGTGATCCCATGTAAGACCATGCCTAGGACATGGCATTGGCATCGATATATAATCCCATGTA
86650235 AGACCATAGCTGGG-C-T-AACGGCATCG
66 AGACCATAGCTGGGACATGAACGGCATCG
* *
86650261 ATATGTGATCCCATGTAAGACCATGCCTTA-GACATGGCATTGGCATCGATCTATGATCCCATGT
1 ATATGTGATCCCATGTAAGACCATGCC-TAGGACATGGCATTGGCATCGATATATAATCCCATGT
* **
86650325 AAGACCATATCTGGGACATGGCATTGGCATCG
65 AAGACCATAGCTGGGACAT-G-AACGGCATCG
* ** *
86650357 ATATGTGATCCCATGTAAAACCATATCTGGGATC-TGGCATTGGCATC
1 ATATGTGATCCCATGTAAGACCATGCCTAGGA-CATGGCATTGGCATC
86650404 CTACCATGTG
Statistics
Matches: 119, Mismatches: 16, Indels: 11
0.82 0.11 0.08
Matches are distributed among these distances:
91 66 0.55
92 3 0.03
93 1 0.01
95 1 0.01
96 47 0.39
97 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (94 bp):
ATATGTGATCCCATGTAAGACCATGCCTAGGACATGGCATTGGCATCGATATATAATCCCATGTA
AGACCATAGCTGGGACATGAACGGCATCG
Found at i:86656058 original size:24 final size:25
Alignment explanation
Indices: 86656031--86656078 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
86656021 ATTCATCAAA
86656031 CGTCCCATAA-AGGGCTCTCATATT
1 CGTCCCATAATAGGGCTCTCATATT
* *
86656055 CGTCTCATAATGGGGCTCTCATAT
1 CGTCCCATAATAGGGCTCTCATAT
86656079 ACTGGTTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (25 bp):
CGTCCCATAATAGGGCTCTCATATT
Found at i:86663069 original size:3 final size:3
Alignment explanation
Indices: 86663061--86663093 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
86663051 ATCTTGAAAA
86663061 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
86663094 TACCGTTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:86673925 original size:14 final size:14
Alignment explanation
Indices: 86673902--86673932 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
86673892 GTAGCTACCA
*
86673902 ATATAGTTTACCCT
1 ATATAATTTACCCT
86673916 ATATAATTTACCCT
1 ATATAATTTACCCT
86673930 ATA
1 ATA
86673933 AAGATAAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.42
Consensus pattern (14 bp):
ATATAATTTACCCT
Found at i:86674320 original size:25 final size:24
Alignment explanation
Indices: 86674290--86674336 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
86674280 GATATTTTTA
*
86674290 TTTTATTATTAAATTTATGAAAACT
1 TTTTATTACT-AATTTATGAAAACT
*
86674315 TTTTATTACTATTTTATGAAAA
1 TTTTATTACTAATTTATGAAAA
86674337 TTCAATAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (24 bp):
TTTTATTACTAATTTATGAAAACT
Found at i:86674698 original size:30 final size:30
Alignment explanation
Indices: 86674663--86674722 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
86674653 TATTTTATTA
86674663 TTAATTTTGTTATTATTTTAAAGATATTTG
1 TTAATTTTGTTATTATTTTAAAGATATTTG
* *
86674693 TTAATTTTGTTATTATTTTAGAGGTATTTG
1 TTAATTTTGTTATTATTTTAAAGATATTTG
86674723 CTTGTTAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGATATTTG
Found at i:86675537 original size:38 final size:41
Alignment explanation
Indices: 86675457--86675537 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 41
86675447 TTAAAAATAT
* *
86675457 TTATATTAAAAGACACTACCATAAATATAATAAATTTTTTA
1 TTATATTAAAAGACACTACAATAAATATAATAAATATTTTA
*
86675498 TTATATTAAAA-ACAC-A-AATGAATATAATAAATATTTTA
1 TTATATTAAAAGACACTACAATAAATATAATAAATATTTTA
86675536 TT
1 TT
86675538 GTACTAAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
38 21 0.57
39 1 0.03
40 4 0.11
41 11 0.30
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.40
Consensus pattern (41 bp):
TTATATTAAAAGACACTACAATAAATATAATAAATATTTTA
Found at i:86675677 original size:21 final size:22
Alignment explanation
Indices: 86675641--86675681 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
86675631 TAGGTTAATG
86675641 ATTTAAAATAAATATAATTATT
1 ATTTAAAATAAATATAATTATT
*
86675663 ATTTAACAT-AATATAATTA
1 ATTTAAAATAAATATAATTA
86675682 ATATAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
ATTTAAAATAAATATAATTATT
Found at i:86679174 original size:1 final size:1
Alignment explanation
Indices: 86679168--86679194 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
86679158 GTCTCACTTC
86679168 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
86679195 GTGTGTGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:86682057 original size:2 final size:2
Alignment explanation
Indices: 86682046--86682084 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
86682036 TCTACAGGAC
86682046 CT CT CT -T CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
86682085 TAAAAAAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
CT
Found at i:86683263 original size:16 final size:17
Alignment explanation
Indices: 86683232--86683264 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
86683222 TTTTTTTTAC
*
86683232 AAAAAATAAAATTGATG
1 AAAAAAGAAAATTGATG
86683249 AAAAAAGAAAA-TGATG
1 AAAAAAGAAAATTGATG
86683265 TTTTATATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (17 bp):
AAAAAAGAAAATTGATG
Found at i:86690793 original size:70 final size:70
Alignment explanation
Indices: 86690237--86690779 Score: 466
Period size: 70 Copynumber: 7.7 Consensus size: 70
86690227 CAACCAATTT
* * * *
86690237 AATATCGCGACCTCTAAAATAGTTAGCGAGAGCCAAAGCTCCCAACTG-ATATGAAAAGGCTCGC
1 AATATCGCGACCTCCAAAATAGTAAGCGCGAGCCAAAGCTCCCAACTGTA-ATCAAAAGGCTCGC
*
86690301 TGATTT
65 TGATTC
* * * * *
86690307 AATATCACGACCTCCAAAACAGTAAGCGCGAGCCAAAGCTCTCAACTGTAATCCAAAGGCTCGTT
1 AATATCGCGACCTCCAAAATAGTAAGCGCGAGCCAAAGCTCCCAACTGTAATCAAAAGGCTCGCT
86690372 GATTC
66 GATTC
** * * * * * * *
86690377 AATATCATGGCCTCTAAAATAATAAGCACGAGCTCAAGCTCAAGCTCCTAGCTGTAGTCCAAAA-
1 AATATCGCGACCTCCAAAATAGTAAGCGCGAGC-C-A----AAGCTCCCAACTGTAAT-CAAAAG
86690441 GCTCGCTGATTC
59 GCTCGCTGATTC
* * * * ** *
86690453 AATATCCCAACCTCCAAAACAATAAGCGTAAGCCAAAGCTCCCAACTG-ATATGCAAAA-GCTCA
1 AATATCGCGACCTCCAAAATAGTAAGCGCGAGCCAAAGCTCCCAACTGTA-AT-CAAAAGGCTCG
86690516 CTGATTC
64 CTGATTC
* * * * * * *
86690523 AATATTGCGACCTCCAAAATAGTTAGTGTGAACCAAAGCTCCCAGCTGTAATCCAAAGGCTCGCT
1 AATATCGCGACCTCCAAAATAGTAAGCGCGAGCCAAAGCTCCCAACTGTAATCAAAAGGCTCGCT
*
86690588 GATTT
66 GATTC
* * * * * * *
86690593 AATATCGCAACCTCCAAAATAGTTAGCGCGAGCCAAAGCTCCCAATTGTAATCCAAATGCTTGTT
1 AATATCGCGACCTCCAAAATAGTAAGCGCGAGCCAAAGCTCCCAACTGTAATCAAAAGGCTCGCT
*
86690658 GATTT
66 GATTC
* * * * * ** * * *
86690663 AATATTGTGACCTCCAAAATAGTCAGTGCGAGCTC-AAGCTCCTAGTTGTAATCCAAAGGCTTGT
1 AATATCGCGACCTCCAAAATAGTAAGCGCGAGC-CAAAGCTCCCAACTGTAATCAAAAGGCTCGC
86690727 TGATTC
65 TGATTC
* *
86690733 AATATCGCGACTTCCAAAATAGTAAGCACGAGCCAAAGCTCCCAACT
1 AATATCGCGACCTCCAAAATAGTAAGCGCGAGCCAAAGCTCCCAACT
86690780 AATATGAAAA
Statistics
Matches: 383, Mismatches: 77, Indels: 26
0.79 0.16 0.05
Matches are distributed among these distances:
69 6 0.02
70 318 0.83
71 4 0.01
72 1 0.00
74 1 0.00
75 1 0.00
76 48 0.13
77 4 0.01
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (70 bp):
AATATCGCGACCTCCAAAATAGTAAGCGCGAGCCAAAGCTCCCAACTGTAATCAAAAGGCTCGCT
GATTC
Found at i:86697366 original size:26 final size:24
Alignment explanation
Indices: 86697312--86697366 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
86697302 TTTTTAAATT
86697312 TAAAAATAAAAAATTAAATTAACA
1 TAAAAATAAAAAATTAAATTAACA
* * * *
86697336 AAAAAATATAAACGATTAAATTTACC
1 TAAAAATA-AAA-AATTAAATTAACA
86697362 TAAAA
1 TAAAA
86697367 TTAGTTTAGA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
24 7 0.29
25 3 0.12
26 14 0.58
ACGTcount: A:0.65, C:0.07, G:0.02, T:0.25
Consensus pattern (24 bp):
TAAAAATAAAAAATTAAATTAACA
Found at i:86700347 original size:21 final size:20
Alignment explanation
Indices: 86700323--86700367 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
86700313 ATTGGAAAAA
86700323 AAAAACAAAACTTAACAAATT
1 AAAAACAAAACTTAACAAA-T
* *
86700344 AAAAACATAACTTAATAAAT
1 AAAAACAAAACTTAACAAAT
86700364 AAAA
1 AAAA
86700368 CGGAAGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.69, C:0.11, G:0.00, T:0.20
Consensus pattern (20 bp):
AAAAACAAAACTTAACAAAT
Found at i:86701380 original size:20 final size:21
Alignment explanation
Indices: 86701355--86701405 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
86701345 GTCACTCCCA
86701355 ATTTTT-CTGTTAAT-TTTTTT
1 ATTTTTCCT-TTAATATTTTTT
86701375 ATTTTTCCTTTAATATTTTTT
1 ATTTTTCCTTTAATATTTTTT
*
86701396 -TTCTTCCTTT
1 ATTTTTCCTTT
86701406 TTTTGATTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 20 0.71
21 8 0.29
ACGTcount: A:0.14, C:0.12, G:0.02, T:0.73
Consensus pattern (21 bp):
ATTTTTCCTTTAATATTTTTT
Found at i:86702296 original size:15 final size:15
Alignment explanation
Indices: 86702276--86702307 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
86702266 TAAAATAAAA
*
86702276 GCCATAAATTTACAT
1 GCCATAAATTCACAT
86702291 GCCATAAATTCACAT
1 GCCATAAATTCACAT
86702306 GC
1 GC
86702308 AATTTTCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.28
Consensus pattern (15 bp):
GCCATAAATTCACAT
Done.