Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 266 of 279
Found at i:86702340 original size:2 final size:2
Alignment explanation
Indices: 86702328--86702361 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
86702318 GCTGTCTCTG
*
86702328 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
86702362 AGCCATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:86708377 original size:22 final size:20
Alignment explanation
Indices: 86708352--86708392 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
86708342 AAAGTTTTGT
*
86708352 TTTAATTTTTTATCCATTTTAA
1 TTTAATTATTTA--CATTTTAA
86708374 TTTAATTATTTACATTTTA
1 TTTAATTATTTACATTTTA
86708393 TTACTTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTAATTATTTACATTTTAA
Found at i:86711892 original size:26 final size:26
Alignment explanation
Indices: 86711861--86711968 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
86711851 TGAAATGCCC
86711861 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
86711887 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
86711913 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
86711939 ATCATGGAACATTTACCT-AACCTATT
1 ATCATGGAACATTTACCTAAACC-ATT
86711965 ATCA
1 ATCA
86711969 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 3 0.04
26 73 0.96
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:86712700 original size:24 final size:21
Alignment explanation
Indices: 86712657--86712698 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
86712647 TAAATAAGAT
86712657 GATAATAAAATAGTAATAATA
1 GATAATAAAATAGTAATAATA
*
86712678 GATAATAAAATAGTAACAATA
1 GATAATAAAATAGTAATAATA
86712699 ATGAAGGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.62, C:0.02, G:0.10, T:0.26
Consensus pattern (21 bp):
GATAATAAAATAGTAATAATA
Found at i:86712798 original size:4 final size:4
Alignment explanation
Indices: 86712784--86712907 Score: 65
Period size: 4 Copynumber: 30.8 Consensus size: 4
86712774 ACAAGGATTA
* * * * *
86712784 AAAT AAAAT AAAT AAAT AAGT AAAT GAAT -AAT AGAT AAAT AGAT AAGT
1 AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * * * * * *
86712832 AAAT GAAC AAAC AAAT GATT AGAAT AAA- AGGAAT -AAT GAAT AAAT AAAC
1 AAAT AAAT AAAT AAAT AAAT A-AAT AAAT A--AAT AAAT AAAT AAAT AAAT
* *
86712881 AAGT AAAT AAAT AAAT GAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
86712908 AGAATTAAAA
Statistics
Matches: 89, Mismatches: 24, Indels: 13
0.71 0.19 0.10
Matches are distributed among these distances:
3 7 0.08
4 73 0.82
5 9 0.10
ACGTcount: A:0.65, C:0.02, G:0.10, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:86717211 original size:24 final size:22
Alignment explanation
Indices: 86717159--86717211 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 22
86717149 TTTAATTTAC
86717159 TTATTATT-TAAGTAATATATA
1 TTATTATTATAAGTAATATATA
*
86717180 TT-TT-TTATAATTATATATTATA
1 TTATTATTATAAGTA-ATA-TATA
86717202 TTATTATTAT
1 TTATTATTAT
86717212 TAAATTAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
19 2 0.08
20 7 0.27
21 5 0.19
22 6 0.23
23 2 0.08
24 4 0.15
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
TTATTATTATAAGTAATATATA
Found at i:86717281 original size:16 final size:17
Alignment explanation
Indices: 86717250--86717289 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
86717240 AAAGTAAATA
*
86717250 AAACAAAGCTTAAAAAG
1 AAACAAAGCATAAAAAG
86717267 AAACAAAGCAT-AAAAG
1 AAACAAAGCATAAAAAG
86717283 AAACAAA
1 AAACAAA
86717290 AAGCTCAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.70, C:0.12, G:0.10, T:0.07
Consensus pattern (17 bp):
AAACAAAGCATAAAAAG
Found at i:86718302 original size:27 final size:27
Alignment explanation
Indices: 86718263--86718314 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
86718253 TTTAATGCCT
* *
86718263 TTCTGGTGTGTTTGGGAGGATTATTTA
1 TTCTAGTGCGTTTGGGAGGATTATTTA
**
86718290 TTCTAGTGCGTTTGGTTGGATTATT
1 TTCTAGTGCGTTTGGGAGGATTATT
86718315 CTGGTGTGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.13, C:0.06, G:0.31, T:0.50
Consensus pattern (27 bp):
TTCTAGTGCGTTTGGGAGGATTATTTA
Found at i:86718325 original size:23 final size:23
Alignment explanation
Indices: 86718287--86718332 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
86718277 GGAGGATTAT
86718287 TTATTCTAGTGCGTTTGGTTGGA
1 TTATTCTAGTGCGTTTGGTTGGA
* *
86718310 TTATTCTGGTGTGTTTGGTTGGA
1 TTATTCTAGTGCGTTTGGTTGGA
86718333 ATTCGTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.11, C:0.07, G:0.33, T:0.50
Consensus pattern (23 bp):
TTATTCTAGTGCGTTTGGTTGGA
Found at i:86723726 original size:38 final size:38
Alignment explanation
Indices: 86723683--86723759 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
86723673 GGTAGATGTA
86723683 TGGTAATGATAATAAACATGCGCATGAAAATACACTTG
1 TGGTAATGATAATAAACATGCGCATGAAAATACACTTG
*
86723721 TGGTAATGATAATAAACATGTGCATGAAAATACACTTG
1 TGGTAATGATAATAAACATGCGCATGAAAATACACTTG
86723759 T
1 T
86723760 AATATATTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.29
Consensus pattern (38 bp):
TGGTAATGATAATAAACATGCGCATGAAAATACACTTG
Found at i:86723742 original size:20 final size:20
Alignment explanation
Indices: 86723683--86723742 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 20
86723673 GGTAGATGTA
86723683 TGGTAATGATAATAAACATG
1 TGGTAATGATAATAAACATG
* * * * *
86723703 -CG-CATGAAAATACACTTG
1 TGGTAATGATAATAAACATG
86723721 TGGTAATGATAATAAACATG
1 TGGTAATGATAATAAACATG
86723741 TG
1 TG
86723743 CATGAAAATA
Statistics
Matches: 28, Mismatches: 10, Indels: 4
0.67 0.24 0.10
Matches are distributed among these distances:
18 12 0.43
19 2 0.07
20 14 0.50
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.28
Consensus pattern (20 bp):
TGGTAATGATAATAAACATG
Found at i:86724095 original size:11 final size:11
Alignment explanation
Indices: 86724063--86724095 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
86724053 AACGAAAAGG
*
86724063 GAGAAAGAAAG
1 GAGAAAGAAAA
86724074 GAGAAAGAAAA
1 GAGAAAGAAAA
86724085 GAGAAAGAAAA
1 GAGAAAGAAAA
86724096 AAACTAGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (11 bp):
GAGAAAGAAAA
Found at i:86726212 original size:27 final size:26
Alignment explanation
Indices: 86726175--86726286 Score: 152
Period size: 27 Copynumber: 4.2 Consensus size: 26
86726165 AGCATGGCTG
* *
86726175 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
86726201 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
86726229 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
86726256 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
86726283 CCAG
1 CCAG
86726287 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
26 6 0.08
27 55 0.71
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:86726234 original size:54 final size:54
Alignment explanation
Indices: 86726175--86726286 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
86726165 AGCATGGCTG
*
86726175 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
86726229 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
86726283 CCAG
1 CCAG
86726287 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:86731802 original size:64 final size:64
Alignment explanation
Indices: 86731725--86731852 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
86731715 ACACCCCCGT
*
86731725 ACCAACCTTACACCGTGTAGGGAGACAACTCGACCCCCCCAACCGCTACACACCACAGAATTTG
1 ACCAACCTTACACCGTGTAGGGAGACAACTCGACCCACCCAACCGCTACACACCACAGAATTTG
* * *
86731789 ACCAACCTTACACCGTGTAGTGAGACAACTTGACCCACCCAACCGCTGCACACCACAGAATTTG
1 ACCAACCTTACACCGTGTAGGGAGACAACTCGACCCACCCAACCGCTACACACCACAGAATTTG
86731853 CAGCATGGCT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.31, C:0.38, G:0.16, T:0.16
Consensus pattern (64 bp):
ACCAACCTTACACCGTGTAGGGAGACAACTCGACCCACCCAACCGCTACACACCACAGAATTTG
Found at i:86731902 original size:27 final size:28
Alignment explanation
Indices: 86731864--86732003 Score: 157
Period size: 27 Copynumber: 5.2 Consensus size: 28
86731854 AGCATGGCTG
* *
86731864 CCAGA-ACAGATA-ATGTGACAGAGTCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* * *
86731890 CCAGATAAAGATAGT-CGTGGCAGGGCCA
1 CCAGATACAGATA-TATGTGGCAGAGCCA
86731918 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
*
86731945 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
* *
86731972 CCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGATACAGATATATGTGGCAGAGCCA
86731999 CCAGA
1 CCAGA
86732004 ACGCTTCCTC
Statistics
Matches: 99, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.06
27 79 0.80
28 14 0.14
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATATGTGGCAGAGCCA
Found at i:86731928 original size:54 final size:54
Alignment explanation
Indices: 86731864--86732003 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 54
86731854 AGCATGGCTG
* *
86731864 CCAGAACAGATA-ATGTGACAGAGTCACCAGATAAAGATAGTCGTGGCAGGGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-AAGATAGTCGTGGCAGAGCCA
* * * *
86731918 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATAAGATAGTCGTGGCAGAGCCA
* * * *
86731972 CCAGATCAGATATTTGTGGCATAGCCACCAGA
1 CCAGAACAGATATATGTGACAGAGCCACCAGA
86732004 ACGCTTCCTC
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
54 58 0.76
55 18 0.24
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATAAGATAGTCGTGGCAGAGCCA
Found at i:86732941 original size:136 final size:136
Alignment explanation
Indices: 86732696--86732968 Score: 501
Period size: 136 Copynumber: 2.0 Consensus size: 136
86732686 ATAATTTCAC
86732696 TGCAAGCTGTCTTCCTGAGCAACAGTTACTAAATCATATATAACTGCAGCTACGAAACTCCAAAT
1 TGCAAGCTGTCTTCCTGAGCAACAGTTACTAAATCATATATAACTGCAGCTACGAAACTCCAAAT
*
86732761 CAAGTTCCGTTAATTTTCCCTGAAAATAGACTCATATATATTCTATCCATAAAATTTTCAGAATT
66 CAAGTTCCGTTAATTTTCCCTGAAAATAGACTCACATATATTCTATCCATAAAATTTTCAGAATT
86732826 TTTGGT
131 TTTGGT
* *
86732832 TGCAAGCTGTCTTCCTGAGCAACAGTTACTAAATCATTTATAACTGGAGCTACGAAACTCCAAAT
1 TGCAAGCTGTCTTCCTGAGCAACAGTTACTAAATCATATATAACTGCAGCTACGAAACTCCAAAT
* *
86732897 CAAGTTCCGTTAATTTTCCCTGAAAATAGAGTCACATATCTTCTATCCATAAAATTTTCAGAATT
66 CAAGTTCCGTTAATTTTCCCTGAAAATAGACTCACATATATTCTATCCATAAAATTTTCAGAATT
86732962 TTTGGT
131 TTTGGT
86732968 T
1 T
86732969 TAGCCAATCA
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 132 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (136 bp):
TGCAAGCTGTCTTCCTGAGCAACAGTTACTAAATCATATATAACTGCAGCTACGAAACTCCAAAT
CAAGTTCCGTTAATTTTCCCTGAAAATAGACTCACATATATTCTATCCATAAAATTTTCAGAATT
TTTGGT
Found at i:86733377 original size:225 final size:225
Alignment explanation
Indices: 86732986--86733434 Score: 826
Period size: 225 Copynumber: 2.0 Consensus size: 225
86732976 TCAATACCAT
*
86732986 AATTTTCTCAAAGTTTCCCATGTTTCACTGTTTGACTAATCTGACTACCCTTCATTAAGAATCAA
1 AATTTTCTCAAAGTTTCCCATGTTTCACTGTTTGACTAATCTGACCACCCTTCATTAAGAATCAA
* *
86733051 ATTTCTCATTGTATAGAATTCAAAATATGTTCTTGTTTATTTCATTAGAAACTAGACTCAATAAT
66 ATTTCTCATTGTACAGAATTCAAAATATGTTCTTGTTTATTTCATTAGAAACTAGACTCAATAAG
*
86733116 ATTTAATTACATAATTTATTCAGCTTCTAATTCTTCTCCCACAATTTATGGTGATTTTCCAAAGT
131 ATTTAATTACATAATTTATTCAGCTTCTAATTCTTCTCCAACAATTTATGGTGATTTTCCAAAGT
86733181 CACGTTACTGCTACTGTCCCAAGCAGATTG
196 CACGTTACTGCTACTGTCCCAAGCAGATTG
*
86733211 AATTTTCTCAAAGTTTCCCATGTTTCACTGTTTGACTAATCTGACCACCCTTCATTACGAATCAA
1 AATTTTCTCAAAGTTTCCCATGTTTCACTGTTTGACTAATCTGACCACCCTTCATTAAGAATCAA
86733276 ATTTCTCATTGTACAGAATTCAAAATATGTTCTTGTTTATTTCATTAGAAACTAGACTCAATAAG
66 ATTTCTCATTGTACAGAATTCAAAATATGTTCTTGTTTATTTCATTAGAAACTAGACTCAATAAG
* * *
86733341 CTTTAATTACATAATTTATTCAGCTTCTAATTCTTCTCCAATAATTTATGGTGATTTTCCAAATT
131 ATTTAATTACATAATTTATTCAGCTTCTAATTCTTCTCCAACAATTTATGGTGATTTTCCAAAGT
86733406 CACGTTACTGCTACTGTCCCAAGCAGATT
196 CACGTTACTGCTACTGTCCCAAGCAGATT
86733435 TATTACCAAA
Statistics
Matches: 216, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
225 216 1.00
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.40
Consensus pattern (225 bp):
AATTTTCTCAAAGTTTCCCATGTTTCACTGTTTGACTAATCTGACCACCCTTCATTAAGAATCAA
ATTTCTCATTGTACAGAATTCAAAATATGTTCTTGTTTATTTCATTAGAAACTAGACTCAATAAG
ATTTAATTACATAATTTATTCAGCTTCTAATTCTTCTCCAACAATTTATGGTGATTTTCCAAAGT
CACGTTACTGCTACTGTCCCAAGCAGATTG
Found at i:86733821 original size:192 final size:192
Alignment explanation
Indices: 86733494--86733876 Score: 721
Period size: 192 Copynumber: 2.0 Consensus size: 192
86733484 CATGTATATT
86733494 ACCAATCAATCATCACATATCTATGATTTTACTTAAGTATAATCTCCATTTCATCATTTTAAAGC
1 ACCAATCAATCATCACATATCTATGATTTTACTTAAGTATAATCTCCATTTCATCATTTTAAAGC
* *
86733559 ACAACAAGTTAGCTGATTTTTCCCTTTAACATTTAAGGCACATGCATGCTCATTTGTTTGGCTCA
66 ACAACAAGTTAGCTGATTTTTCCCTTTAACATCTAAGGCACATGCATCCTCATTTGTTTGGCTCA
*
86733624 ACTTCACCTATCTTCTATTTTTCATCAAAAAAACATGAAACAACAACCATTTCCTTCATTTC
131 ACTTCACCTATCTTCCATTTTTCATCAAAAAAACATGAAACAACAACCATTTCCTTCATTTC
86733686 ACCAATCAATCATCACATATCTATGATTTTACTTAAGTATAATCTCCATTTCATCATTTTAAAGC
1 ACCAATCAATCATCACATATCTATGATTTTACTTAAGTATAATCTCCATTTCATCATTTTAAAGC
*
86733751 ACAACATGTTAGCTGATTTTTCCCTTTAACATCTAAGGCACATGCATCCTCATTTGTTTGGCTCA
66 ACAACAAGTTAGCTGATTTTTCCCTTTAACATCTAAGGCACATGCATCCTCATTTGTTTGGCTCA
*
86733816 ACTTCACCTATCTTCCATTTTTCATCAAAAGAACATGAAACAACAACCATTTCCTTCATTT
131 ACTTCACCTATCTTCCATTTTTCATCAAAAAAACATGAAACAACAACCATTTCCTTCATTT
86733877 TAATTCATGA
Statistics
Matches: 186, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
192 186 1.00
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37
Consensus pattern (192 bp):
ACCAATCAATCATCACATATCTATGATTTTACTTAAGTATAATCTCCATTTCATCATTTTAAAGC
ACAACAAGTTAGCTGATTTTTCCCTTTAACATCTAAGGCACATGCATCCTCATTTGTTTGGCTCA
ACTTCACCTATCTTCCATTTTTCATCAAAAAAACATGAAACAACAACCATTTCCTTCATTTC
Found at i:86734321 original size:232 final size:232
Alignment explanation
Indices: 86733915--86734377 Score: 881
Period size: 232 Copynumber: 2.0 Consensus size: 232
86733905 ACTAAAAATT
*
86733915 AAAATATACTTCAAGAGTTAAGGTAGAATCAAGAAGAACTCATGAATCTCAAAATAGAAGCAAGG
1 AAAATATACTTCAAGAGTTAAGGTAGAATCAAGAAGAACTCATGAACCTCAAAATAGAAGCAAGG
*
86733980 TACCAAGAACTTACCTTCAATTTTCCTCCTCCTAATGACCGAATACTCAAGAGCTTTCTCCCCTC
66 TACCAAGAACTTACCTTCAATTTTCCTCCTCCTAATGACCGAATACTCAAGAGCTTTCTCCCCTA
86734045 CTTTCTCTTCTCTAACTTTCAGCTATGATGAACAAAGATGGACAAAACTTTGTTCTTTTCACCCC
131 CTTTCTCTTCTCTAACTTTCAGCTATGATGAACAAAGATGGACAAAACTTTGTTCTTTTCACCCC
*
86734110 TTTTTCTTTTAATAAAACTTCATATTTCATCCATTTC
196 TTTTTATTTTAATAAAACTTCATATTTCATCCATTTC
*
86734147 AAAATATACTTCAAGAGTTAAGGTAGAATCAAGAAGAACTCATGAACCTTAAAATAGAAGCAAGG
1 AAAATATACTTCAAGAGTTAAGGTAGAATCAAGAAGAACTCATGAACCTCAAAATAGAAGCAAGG
86734212 TACCAAGAACTTACCTTCAATTTTCCTCCTCCTAATGACCGAATACTCAAGAGCTTTCTCCCCTA
66 TACCAAGAACTTACCTTCAATTTTCCTCCTCCTAATGACCGAATACTCAAGAGCTTTCTCCCCTA
*
86734277 TTTTCTCTTCTCTAACTTTCAGCTATGATGAACAAAGATGGACAAAACTTTGTTCTTTTCACCCC
131 CTTTCTCTTCTCTAACTTTCAGCTATGATGAACAAAGATGGACAAAACTTTGTTCTTTTCACCCC
86734342 TTTTTATTTTAATAAAACTTCATATTTCATCCATTT
196 TTTTTATTTTAATAAAACTTCATATTTCATCCATTT
86734378 AATTCTTTAA
Statistics
Matches: 226, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
232 226 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.33
Consensus pattern (232 bp):
AAAATATACTTCAAGAGTTAAGGTAGAATCAAGAAGAACTCATGAACCTCAAAATAGAAGCAAGG
TACCAAGAACTTACCTTCAATTTTCCTCCTCCTAATGACCGAATACTCAAGAGCTTTCTCCCCTA
CTTTCTCTTCTCTAACTTTCAGCTATGATGAACAAAGATGGACAAAACTTTGTTCTTTTCACCCC
TTTTTATTTTAATAAAACTTCATATTTCATCCATTTC
Found at i:86734443 original size:26 final size:26
Alignment explanation
Indices: 86734407--86735088 Score: 1321
Period size: 26 Copynumber: 26.2 Consensus size: 26
86734397 CATGAAATTC
86734407 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734433 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734459 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734485 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734511 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734537 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734563 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734589 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734615 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734641 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734667 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734693 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734719 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734745 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734771 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734797 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734823 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734849 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734875 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734901 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734927 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734953 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86734979 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
86735005 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
86735031 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
86735057 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
86735083 TTATCA
1 TTATCA
86735089 ATTTGTATCA
Statistics
Matches: 653, Mismatches: 2, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
26 651 1.00
27 2 0.00
ACGTcount: A:0.38, C:0.27, G:0.04, T:0.31
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:86736192 original size:18 final size:18
Alignment explanation
Indices: 86736165--86736211 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
86736155 GTGTTACAAG
* * *
86736165 CACCATCGCACTATGGAC
1 CACCACCGCACTACGAAC
86736183 CACCACCGCACTACGAAC
1 CACCACCGCACTACGAAC
*
86736201 CACCACTGCAC
1 CACCACCGCAC
86736212 GTGGCCGGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.30, C:0.47, G:0.13, T:0.11
Consensus pattern (18 bp):
CACCACCGCACTACGAAC
Found at i:86737670 original size:46 final size:46
Alignment explanation
Indices: 86737606--86737698 Score: 150
Period size: 46 Copynumber: 2.0 Consensus size: 46
86737596 ATTGCAGAAT
* *
86737606 GTACCGCCATCTGCTATTTGTCTAACATACGTCGACTCCCTCTTAG
1 GTACCGCCATCTGATATTTGTCTAACATACGACGACTCCCTCTTAG
* *
86737652 GTACCGTCATTTGATATTTGTCTAACATACGACGACTCCCTCTTAG
1 GTACCGCCATCTGATATTTGTCTAACATACGACGACTCCCTCTTAG
86737698 G
1 G
86737699 AAACAAGGCG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (46 bp):
GTACCGCCATCTGATATTTGTCTAACATACGACGACTCCCTCTTAG
Found at i:86738741 original size:15 final size:16
Alignment explanation
Indices: 86738723--86738761 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
86738713 ATAATATTAG
*
86738723 AAAATTTAATAAATAA
1 AAAATTTAAAAAATAA
*
86738739 AAAA-ATAAAAAATAA
1 AAAATTTAAAAAATAA
86738754 AAAATTTA
1 AAAATTTA
86738762 GAAGTGAGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATTTAAAAAATAA
Found at i:86743476 original size:15 final size:15
Alignment explanation
Indices: 86743456--86743491 Score: 63
Period size: 15 Copynumber: 2.3 Consensus size: 15
86743446 ATTTTTAATT
86743456 ATATTGGTTTATTAA
1 ATATTGGTTTATTAA
86743471 ATATTGGTTTATTAA
1 ATATTGGTTTATTAA
86743486 AGTATT
1 A-TATT
86743492 AAATTAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (15 bp):
ATATTGGTTTATTAA
Found at i:86744877 original size:24 final size:24
Alignment explanation
Indices: 86744828--86744896 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
86744818 GTTATGTGGC
*
86744828 AAAGGATGAATT-TTGGTAAATGA
1 AAAGGATGAATTGATGGTAAATGA
*
86744851 AAAGGATGAATTGATGGTAAATTA
1 AAAGGATGAATTGATGGTAAATGA
* *
86744875 AAATGATGAATTGATGGCAAAT
1 AAAGGATGAATTGATGGTAAAT
86744897 AACCCAAGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
23 12 0.29
24 29 0.71
ACGTcount: A:0.45, C:0.01, G:0.25, T:0.29
Consensus pattern (24 bp):
AAAGGATGAATTGATGGTAAATGA
Found at i:86748572 original size:10 final size:10
Alignment explanation
Indices: 86748557--86748589 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
86748547 ATTTTCGTCC
86748557 ACACAGGTAG
1 ACACAGGTAG
86748567 ACACAGGTAG
1 ACACAGGTAG
86748577 ACACAGGTAG
1 ACACAGGTAG
86748587 ACA
1 ACA
86748590 TATGGCCTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.42, C:0.21, G:0.27, T:0.09
Consensus pattern (10 bp):
ACACAGGTAG
Found at i:86751796 original size:31 final size:31
Alignment explanation
Indices: 86751754--86751894 Score: 246
Period size: 31 Copynumber: 4.5 Consensus size: 31
86751744 CTTGACATGT
*
86751754 ACTGGGCCGAAGCCTTTCCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
86751785 ACTGGGTCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
86751816 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
86751847 ACTGGGCCAAAGCTTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
86751878 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
86751895 ACTGTAAACG
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 103 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:86751978 original size:42 final size:42
Alignment explanation
Indices: 86751918--86752010 Score: 152
Period size: 42 Copynumber: 2.2 Consensus size: 42
86751908 TGGCCCTTAG
*
86751918 GCCCAATTTCAATATCACAT-TGAATGTCAATGGATGTATGCAA
1 GCCC-ATTTCAATATCACATGT-AATGTCAATGAATGTATGCAA
86751961 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
86752003 GCCCATTT
1 GCCCATTT
86752011 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
42 43 0.90
43 5 0.10
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:86752186 original size:25 final size:25
Alignment explanation
Indices: 86752158--86752227 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
86752148 CTCTTTTAAT
86752158 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
86752183 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
86752208 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
86752228 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:86753067 original size:27 final size:27
Alignment explanation
Indices: 86753037--86753101 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
86753027 GGGCATATTC
86753037 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * * *
86753064 GTCACTTTACCCTATAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
86753091 GTCTTTTTACC
1 GTCATTTTACC
86753102 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:86753103 original size:26 final size:28
Alignment explanation
Indices: 86753059--86753110 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
86753049 TACAAGGGTA
86753059 TTACGGTCACTTTACCCTA-TAGGGGCT
1 TTACGGTCACTTTACCCTATTAGGGGCT
**
86753086 TTACGGTCTTTTTA-CCTATTAGGGG
1 TTACGGTCACTTTACCCTATTAGGGG
86753111 TATTTTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (28 bp):
TTACGGTCACTTTACCCTATTAGGGGCT
Found at i:86753185 original size:27 final size:27
Alignment explanation
Indices: 86753132--86753368 Score: 188
Period size: 27 Copynumber: 8.7 Consensus size: 27
86753122 TTTTATCCTA
* * * *
86753132 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* **
86753159 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* ** * *
86753186 CAATGGTATTTCTATAATTTTTAAAAAGT
1 CAAGGGTATTTCGGTAA-TTTTACAAA-C
** * *
86753215 CAAGGGTATTTTTGTAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * * *
86753242 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* *
86753269 TAAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
86753296 C-AGTGGTATTTCGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTACAAAC
* * *
86753323 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
86753350 TAGGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
86753369 CTATTCTACA
Statistics
Matches: 176, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
26 2 0.01
27 144 0.82
28 16 0.09
29 14 0.08
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAC
Found at i:86753304 original size:54 final size:54
Alignment explanation
Indices: 86753135--86753368 Score: 209
Period size: 54 Copynumber: 4.3 Consensus size: 54
86753125 TATCCTACAA
* * * * ** *
86753135 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACCAG
* * * * ** * **
86753189 TGGTATTTCT-ATAATTTTTAAAAAGTCAAGGGTATTTTTGTAATTTTATAAATTAG
1 GGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTTCGGTAATTTTACAAACCAG
** *
86753245 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACCAG
* * * * * *
86753299 TGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACCAG
86753353 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
86753369 CTATTCTACA
Statistics
Matches: 144, Mismatches: 32, Indels: 8
0.78 0.17 0.04
Matches are distributed among these distances:
54 94 0.65
55 16 0.11
56 34 0.24
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACCAG
Found at i:86753335 original size:81 final size:81
Alignment explanation
Indices: 86753219--86753368 Score: 237
Period size: 81 Copynumber: 1.9 Consensus size: 81
86753209 AAAAGTCAAG
** * * *
86753219 GGTATTTTTGTAATTTTATAAATTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGT
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGT
86753284 AATTTCACAAACCAGT
66 AATTTCACAAACCAGT
* *
86753300 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGT
1 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGT
86753365 AATT
66 AATT
86753369 CTATTCTACA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCGGT
AATTTCACAAACCAGT
Found at i:86753384 original size:54 final size:53
Alignment explanation
Indices: 86753215--86753401 Score: 205
Period size: 54 Copynumber: 3.5 Consensus size: 53
86753205 TTTAAAAAGT
* * * *
86753215 CAAGGGTATTTTTGTAATTTTATAAATTAGGGGTATTTTGGTAATTTTACAAA
1 CAAGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAA
* * * * *
86753268 TTAAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCGGTAATTTTACAAA
1 -CAAGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAA
* * * *
86753322 CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATTC-TA
1 C-AAGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATT-T-TACAAA
*
86753377 CAAGGGTATTTTAGTAATTTCACAA
1 CAAGGGTATTTTGGTAATTTCACAA
86753402 TCGAGGGTAA
Statistics
Matches: 109, Mismatches: 21, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
54 104 0.95
55 3 0.03
56 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.41
Consensus pattern (53 bp):
CAAGGGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAA
Found at i:86753385 original size:81 final size:80
Alignment explanation
Indices: 86753215--86753401 Score: 225
Period size: 81 Copynumber: 2.3 Consensus size: 80
86753205 TTTAAAAAGT
* * * *
86753215 CAAGGGTATTTTTGTAATTTTATAAATTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTT
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
86753280 CGGTAATTTCACAAA
66 CGGTAATTTCACAAA
* ** *
86753295 CCAGTGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATT
1 CAAG-GGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATT
* *
86753360 TTGGTAA-TTCTATTC-TA
65 TCGGTAATTTC-A--CAAA
*
86753377 CAAGGGTATTTTAGTAATTTCACAA
1 CAAGGGTATTTTAGTAATTTTACAA
86753402 TCGAGGGTAA
Statistics
Matches: 90, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 6 0.07
81 79 0.88
82 4 0.04
83 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.41
Consensus pattern (80 bp):
CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
CGGTAATTTCACAAA
Found at i:86753465 original size:27 final size:27
Alignment explanation
Indices: 86753400--86753491 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
86753390 GTAATTTCAC
*
86753400 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGCA
86753427 AA-CTGAGGGTAAAATGGTAATTTTGCA
1 AATC-GAGGGTAAAATGGTAATTTTGCA
* * * * **
86753454 AATCGAGAGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGCA
86753481 AATCGAGGGTA
1 AATCGAGGGTA
86753492 CTTTGGTAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.02
27 53 0.96
28 1 0.02
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGCA
Found at i:86757574 original size:18 final size:18
Alignment explanation
Indices: 86757551--86757591 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
86757541 GAGTCAAGAG
86757551 TGAATTTAGA-AATATATT
1 TGAATTTAGAGAAT-TATT
*
86757569 TGAA-TTAGAGAATTTTT
1 TGAATTTAGAGAATTATT
86757586 TGAATT
1 TGAATT
86757592 AAAAGAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.46
Consensus pattern (18 bp):
TGAATTTAGAGAATTATT
Found at i:86757600 original size:18 final size:17
Alignment explanation
Indices: 86757567--86757601 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
86757557 TAGAAATATA
*
86757567 TTTGAATTAGAGAATTT
1 TTTGAATTAAAGAATTT
86757584 TTTGAATTAAAAGAATTT
1 TTTGAATT-AAAGAATTT
86757602 ATAAAATCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (17 bp):
TTTGAATTAAAGAATTT
Found at i:86757852 original size:14 final size:14
Alignment explanation
Indices: 86757833--86757862 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
86757823 TTATATCGAG
86757833 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
86757847 ACCAATCCAATTCA
1 ACCAATCCAAATCA
86757861 AC
1 AC
86757863 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:86763423 original size:25 final size:25
Alignment explanation
Indices: 86763391--86763440 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
86763381 ATGATTTTGA
86763391 TTGGTTTCTAATATGAATGCTAGAT
1 TTGGTTTCTAATATGAATGCTAGAT
86763416 TTGGTTTCTAATATGAATGCTAGAT
1 TTGGTTTCTAATATGAATGCTAGAT
86763441 GAATATAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (25 bp):
TTGGTTTCTAATATGAATGCTAGAT
Found at i:86767499 original size:42 final size:41
Alignment explanation
Indices: 86767452--86767535 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 41
86767442 GTATAGATAG
86767452 TTAATTAAAGAAAAATGACTAAATTGTAAAAGGTGCAAAACT
1 TTAATTAAAGAAAAATGACTAAATTGT-AAAGGTGCAAAACT
*
86767494 TTAATTAAAGAAAAATGACTAAATTGTAACGGTGCAAAACT
1 TTAATTAAAGAAAAATGACTAAATTGTAAAGGTGCAAAACT
86767535 T
1 T
86767536 GCAAATTAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
41 14 0.34
42 27 0.66
ACGTcount: A:0.50, C:0.08, G:0.14, T:0.27
Consensus pattern (41 bp):
TTAATTAAAGAAAAATGACTAAATTGTAAAGGTGCAAAACT
Found at i:86769694 original size:19 final size:20
Alignment explanation
Indices: 86769670--86769710 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
86769660 ACCCCTACAG
*
86769670 TCTAAAATTTTTAAAT-TTT
1 TCTAAAATTTTCAAATGTTT
86769689 TCTAAAATTTTCAAATGTTT
1 TCTAAAATTTTCAAATGTTT
86769709 TC
1 TC
86769711 GATTTAGTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.34, C:0.10, G:0.02, T:0.54
Consensus pattern (20 bp):
TCTAAAATTTTCAAATGTTT
Found at i:86773513 original size:12 final size:12
Alignment explanation
Indices: 86773496--86773537 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
86773486 CTCACACGCA
*
86773496 CGTGTGCCAGGC
1 CGTGTGCTAGGC
86773508 CGTGTGCTAGGC
1 CGTGTGCTAGGC
86773520 CGTGTGCTAGGC
1 CGTGTGCTAGGC
86773532 CGTGTG
1 CGTGTG
86773538 AAAACTGGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.07, C:0.26, G:0.43, T:0.24
Consensus pattern (12 bp):
CGTGTGCTAGGC
Found at i:86777855 original size:42 final size:44
Alignment explanation
Indices: 86777758--86777912 Score: 153
Period size: 44 Copynumber: 3.6 Consensus size: 44
86777748 TCGTACAACA
* ** *
86777758 CCAACGTCCCAGATGTGGTCTTACA--TATAATCA-AATATCAATG
1 CCAATGTCCCAGACATGGTCTTACACGTA-AATCACAA-ATCGATG
* *
86777801 CCACTGTCCCAGACA-GGCTCTTACACG-AAA-C-CATATACGATG
1 CCAATGTCCCAGACATGG-TCTTACACGTAAATCACAAAT-CGATG
*
86777843 CCAATGTCCCAGACATGGTCTTACATGTAAATCACAAATCGATG
1 CCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCGATG
*
86777887 CCAACGTCCCAGACATGGTCTTACAC
1 CCAATGTCCCAGACATGGTCTTACAC
86777913 AATAACACAT
Statistics
Matches: 92, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 30 0.33
43 25 0.27
44 31 0.34
45 4 0.04
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.23
Consensus pattern (44 bp):
CCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCGATG
Found at i:86777899 original size:44 final size:44
Alignment explanation
Indices: 86777758--86777911 Score: 160
Period size: 42 Copynumber: 3.6 Consensus size: 44
86777748 TCGTACAACA
** * *
86777758 CCAACGTCCCAGATGTGGTCTTACATAT-AATCA-AATATCAATG
1 CCAACGTCCCAGACATGGTCTTACATGTAAATCACAA-ATCGATG
* *
86777801 CC-ACTGTCCCAGACA-GGCTCTTACACG-AAA-C-CATATACGATG
1 CCAAC-GTCCCAGACATGG-TCTTACATGTAAATCACAAAT-CGATG
*
86777843 CCAATGTCCCAGACATGGTCTTACATGTAAATCACAAATCGATG
1 CCAACGTCCCAGACATGGTCTTACATGTAAATCACAAATCGATG
86777887 CCAACGTCCCAGACATGGTCTTACA
1 CCAACGTCCCAGACATGGTCTTACA
86777912 CAATAACACA
Statistics
Matches: 91, Mismatches: 10, Indels: 19
0.76 0.08 0.16
Matches are distributed among these distances:
41 2 0.02
42 30 0.33
43 25 0.27
44 30 0.33
45 4 0.04
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (44 bp):
CCAACGTCCCAGACATGGTCTTACATGTAAATCACAAATCGATG
Found at i:86791508 original size:15 final size:15
Alignment explanation
Indices: 86791479--86791518 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
86791469 AAAGATGACA
* *
86791479 AGAAAACCAAGATAG
1 AGAAATCCAAAATAG
*
86791494 AGGAATCCAAAATAG
1 AGAAATCCAAAATAG
86791509 AGAAATCCAA
1 AGAAATCCAA
86791519 GATACGATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.10
Consensus pattern (15 bp):
AGAAATCCAAAATAG
Found at i:86792403 original size:14 final size:14
Alignment explanation
Indices: 86792384--86792417 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
86792374 CACGACTTTC
*
86792384 ATCATCATAGTAAT
1 ATCATCATAATAAT
*
86792398 ATCATCATAATCAT
1 ATCATCATAATAAT
86792412 ATCATC
1 ATCATC
86792418 CACTTCAGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.21, G:0.03, T:0.35
Consensus pattern (14 bp):
ATCATCATAATAAT
Found at i:86804293 original size:79 final size:81
Alignment explanation
Indices: 86804193--86804377 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 81
86804183 GCTCCTCGTT
*
86804193 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
* *
86804255 CGGATTTAGTAAC-TCGCA
63 CGGATATAGTAACTTAGCA
**
86804273 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
86804337 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
86804353 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86804378 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
78 5 0.05
79 54 0.58
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:86804377 original size:40 final size:40
Alignment explanation
Indices: 86804193--86804377 Score: 220
Period size: 40 Copynumber: 4.7 Consensus size: 40
86804183 GCTCCTCGTT
* *
86804193 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* *
86804233 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
86804273 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* * *
86804312 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
86804353 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86804378 CAGCATTCAA
Statistics
Matches: 125, Mismatches: 10, Indels: 20
0.81 0.06 0.13
Matches are distributed among these distances:
38 3 0.02
39 30 0.24
40 77 0.62
41 14 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:86804837 original size:53 final size:54
Alignment explanation
Indices: 86804743--86804849 Score: 180
Period size: 53 Copynumber: 2.0 Consensus size: 54
86804733 TATACATTAG
*
86804743 ACATTAAAGTCTCATACATGCAAAAATCATGCATCAACACAACATATTAGCTAA
1 ACATTAAAGTCACATACATGCAAAAATCATGCATCAACACAACATATTAGCTAA
**
86804797 ACATTAAAGTCACATACATG-TGAAATCATGCATCAACACAACATATTAGCTAA
1 ACATTAAAGTCACATACATGCAAAAATCATGCATCAACACAACATATTAGCTAA
86804850 TTTTTCCCCC
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
53 31 0.62
54 19 0.38
ACGTcount: A:0.46, C:0.21, G:0.08, T:0.24
Consensus pattern (54 bp):
ACATTAAAGTCACATACATGCAAAAATCATGCATCAACACAACATATTAGCTAA
Found at i:86811240 original size:11 final size:11
Alignment explanation
Indices: 86811224--86811249 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
86811214 AAAATTGAAT
86811224 AAAAGAGAAAG
1 AAAAGAGAAAG
86811235 AAAAGAGAAAG
1 AAAAGAGAAAG
86811246 AAAA
1 AAAA
86811250 AGATATCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (11 bp):
AAAAGAGAAAG
Found at i:86812007 original size:20 final size:20
Alignment explanation
Indices: 86811982--86812027 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
86811972 GATTGAATTG
86811982 AGTGATATTGTGTATGAGAA
1 AGTGATATTGTGTATGAGAA
86812002 AGTGATATTGTGTATGAGAA
1 AGTGATATTGTGTATGAGAA
86812022 AGTGAT
1 AGTGAT
86812028 GTCGAACGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.30, T:0.35
Consensus pattern (20 bp):
AGTGATATTGTGTATGAGAA
Found at i:86829068 original size:191 final size:192
Alignment explanation
Indices: 86828739--86829124 Score: 675
Period size: 191 Copynumber: 2.0 Consensus size: 192
86828729 GCCAAATCGG
* *
86828739 TAGATTTTGGTGTTTCTAAGTTTTGCTTATAATGGCATGTATAGGTGTTTTTGTTTGATGTTTTA
1 TAGATTTTGGTGTTTCTAAATTTTGCTTATAATGCCATGTATAGGTGTTTTTGTTTGATGTTTT-
*
86828804 GCCATTTGTTTTTTACTTGTGTTTATGGCATTTTGCATGGTGAAATGGTGCTAATTTTGGCATGT
65 ---ATTTGTTTTTTACTTGTGTTTATGGCATTTTGCATGGTGAAATGGTACTAATTTTGGCATGT
*
86828869 ATATATTTGGCCTTAAAATGGTTGATATCGTGGCTTATGATGCTTGAATGATTGAAGATGGAATG
127 ATATATTTGGCCTTAAAATGGTTGATATCATGGCTTATGATGCTTGAATGATTGAAGATGGAATG
86828934 A
192 A
*
86828935 TAGATTTTGGTGTTTCTAAATTTTGGTTATAATGCCATGTATAGGTGTTTTTGTTTGATGTTTT-
1 TAGATTTTGGTGTTTCTAAATTTTGCTTATAATGCCATGTATAGGTGTTTTTGTTTGATGTTTTA
*
86828999 TTTGTTTTTTACTTGTGTTTATGGCATTTTGGATGGTGAAATGGTACTAATTTTGGCATGTATAT
66 TTTGTTTTTTACTTGTGTTTATGGCATTTTGCATGGTGAAATGGTACTAATTTTGGCATGTATAT
86829064 ATTTGGCCTTAAAATGGTTGATATCATGGCTTATGATGCTTGAATGATTGAAGATGGAATG
131 ATTTGGCCTTAAAATGGTTGATATCATGGCTTATGATGCTTGAATGATTGAAGATGGAATG
86829125 GTAGTAAAAA
Statistics
Matches: 184, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
191 123 0.67
196 61 0.33
ACGTcount: A:0.22, C:0.07, G:0.24, T:0.47
Consensus pattern (192 bp):
TAGATTTTGGTGTTTCTAAATTTTGCTTATAATGCCATGTATAGGTGTTTTTGTTTGATGTTTTA
TTTGTTTTTTACTTGTGTTTATGGCATTTTGCATGGTGAAATGGTACTAATTTTGGCATGTATAT
ATTTGGCCTTAAAATGGTTGATATCATGGCTTATGATGCTTGAATGATTGAAGATGGAATGA
Found at i:86835128 original size:23 final size:21
Alignment explanation
Indices: 86835094--86835136 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
86835084 ATTAATATAA
86835094 ATAATTTATAATATGTAGTAT
1 ATAATTTATAATATGTAGTAT
*
86835115 ATAATTTAGTTAATATTTAGTA
1 ATAATTTA--TAATATGTAGTA
86835137 GGTTGAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
23 11 0.58
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (21 bp):
ATAATTTATAATATGTAGTAT
Found at i:86843357 original size:10 final size:10
Alignment explanation
Indices: 86843344--86843390 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
86843334 GAGCTCCGTC
*
86843344 CAGCTCAATT
1 CAGCTCATTT
86843354 CAGCTCATTT
1 CAGCTCATTT
*
86843364 GAGCTCATTT
1 CAGCTCATTT
*
86843374 CAGCTCGTTT
1 CAGCTCATTT
*
86843384 GAGCTCA
1 CAGCTCA
86843391 ACCGAGCTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (10 bp):
CAGCTCATTT
Found at i:86843368 original size:20 final size:20
Alignment explanation
Indices: 86843345--86843391 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
86843335 AGCTCCGTCC
86843345 AGCTCAATTCAGCTCATTTG
1 AGCTCAATTCAGCTCATTTG
* *
86843365 AGCTCATTTCAGCTCGTTTG
1 AGCTCAATTCAGCTCATTTG
86843385 AGCTCAA
1 AGCTCAA
86843392 CCGAGCTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (20 bp):
AGCTCAATTCAGCTCATTTG
Found at i:86845972 original size:9 final size:10
Alignment explanation
Indices: 86845965--86846021 Score: 53
Period size: 11 Copynumber: 5.5 Consensus size: 10
86845955 AAGAGAAAAC
86845965 AAAGAAAAGA
1 AAAGAAAAGA
86845975 AAAGAAAAAGA
1 AAAG-AAAAGA
*
86845986 AAA-AGAAGAA
1 AAAGAAAAG-A
*
86845996 AAAGAAAACA
1 AAAGAAAAGA
*
86846006 AAATAAAAAGA
1 AAA-GAAAAGA
86846017 AAAGA
1 AAAGA
86846022 GAGGCAAGAG
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
9 4 0.11
10 13 0.35
11 20 0.54
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.02
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:86845975 original size:5 final size:5
Alignment explanation
Indices: 86845965--86846021 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
86845955 AAGAGAAAAC
* * *
86845965 AAAGA AAAGA AAAGAA AAAGA AAA-A GAAGAA AAAGA AAACA AAATAA
1 AAAGA AAAGA AAAG-A AAAGA AAAGA AAAG-A AAAGA AAAGA AAA-GA
86846012 AAAGA AAAGA
1 AAAGA AAAGA
86846022 GAGGCAAGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
4 3 0.07
5 27 0.63
6 13 0.30
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:86845994 original size:25 final size:25
Alignment explanation
Indices: 86845969--86846017 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
86845959 GAAAACAAAG
86845969 AAAAGAAAAGAAAAAGAAAAAGAAGA
1 AAAAGAAAA-AAAAAGAAAAAGAAGA
* *
86845995 AAAAGAAAACAAAATAAAAAGAA
1 AAAAGAAAAAAAAAGAAAAAGAA
86846018 AAGAGAGGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.82, C:0.02, G:0.14, T:0.02
Consensus pattern (25 bp):
AAAAGAAAAAAAAAGAAAAAGAAGA
Found at i:86846101 original size:11 final size:12
Alignment explanation
Indices: 86846068--86846099 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
86846058 CTTGAGAGAA
86846068 TTTGAAAAAGCC
1 TTTGAAAAAGCC
86846080 TTTGAAAAAGCC
1 TTTGAAAAAGCC
86846092 TTTGAAAA
1 TTTGAAAA
86846100 GCAAAAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (12 bp):
TTTGAAAAAGCC
Found at i:86846110 original size:12 final size:12
Alignment explanation
Indices: 86846102--86846126 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86846092 TTTGAAAAGC
86846102 AAAAAGAAAATG
1 AAAAAGAAAATG
86846114 AAAAAGAAAATG
1 AAAAAGAAAATG
86846126 A
1 A
86846127 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:86846123 original size:18 final size:18
Alignment explanation
Indices: 86846096--86846138 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
86846086 AAAGCCTTTG
86846096 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
86846115 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
86846133 AAAAGA
1 AAAAGA
86846139 GAGCGAAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.70, C:0.02, G:0.19, T:0.09
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:86846136 original size:30 final size:31
Alignment explanation
Indices: 86846102--86846183 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 31
86846092 TTTGAAAAGC
*
86846102 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* ** *
86846132 AAAAAGAGAGCG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
86846162 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
86846184 TGAAACAATA
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
29 8 0.20
30 24 0.59
31 9 0.22
ACGTcount: A:0.63, C:0.01, G:0.23, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:86848278 original size:20 final size:20
Alignment explanation
Indices: 86848235--86848281 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
86848225 AGCTCCGTCC
*
86848235 AGCTCAATTCAGCTTATTTA
1 AGCTCAATTCAGCTCATTTA
* * *
86848255 AGCTCATTTCAGCTCGTTTG
1 AGCTCAATTCAGCTCATTTA
86848275 AGCTCAA
1 AGCTCAA
86848282 CCGAGCTTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (20 bp):
AGCTCAATTCAGCTCATTTA
Found at i:86850951 original size:73 final size:73
Alignment explanation
Indices: 86850873--86851011 Score: 165
Period size: 73 Copynumber: 1.9 Consensus size: 73
86850863 CTCATAAGAT
* * *
86850873 CCATAT-TCAGAAAGATCAAGCGAGCCAATAAT-GGGTAGCTCTGAAAAGTCATTAATTAGGAAG
1 CCATATATCAGAAAGATCAAGCGAGCC-AT-ATCGGGAAGCTCTGAAAAGCCATTAATCAGGAAG
86850936 CTCCGGATAG
64 CTCCGGATAG
** * * * *
86850946 CCATATATTGGGAAGTTCAAGGGAGCCATATCGGGAAGCTCTGAAGAGCCATTAATCAGGAAGCT
1 CCATATATCAGAAAGATCAAGCGAGCCATATCGGGAAGCTCTGAAAAGCCATTAATCAGGAAGCT
86851011 C
66 C
86851012 ACGAAGAGCC
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
72 2 0.04
73 38 0.69
74 15 0.27
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.22
Consensus pattern (73 bp):
CCATATATCAGAAAGATCAAGCGAGCCATATCGGGAAGCTCTGAAAAGCCATTAATCAGGAAGCT
CCGGATAG
Found at i:86851021 original size:26 final size:26
Alignment explanation
Indices: 86850979--86851049 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
86850969 AGCCATATCG
*
86850979 GGAAGCTC-TGAAGAGCCATTAATCA
1 GGAAGCTCACGAAGAGCCATTAATCA
* * *
86851004 GGAAGCTCACGAAGAGCCTTTTATCG
1 GGAAGCTCACGAAGAGCCATTAATCA
86851030 GGAAGCTCACGAAGAGCCAT
1 GGAAGCTCACGAAGAGCCAT
86851050 ATATTGAGAC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
25 8 0.20
26 32 0.80
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.18
Consensus pattern (26 bp):
GGAAGCTCACGAAGAGCCATTAATCA
Found at i:86851063 original size:26 final size:26
Alignment explanation
Indices: 86850973--86851064 Score: 82
Period size: 26 Copynumber: 3.6 Consensus size: 26
86850963 CAAGGGAGCC
* *
86850973 ATATCGGGAAGCTC-TGAAGAGCCAT
1 ATATCGAGAAGCTCACGAAGAGCCAT
*
86850998 -TAATC-AGGAAGCTCACGAAGAGCCTT
1 AT-ATCGA-GAAGCTCACGAAGAGCCAT
* *
86851024 TTATCGGGAAGCTCACGAAGAGCCAT
1 ATATCGAGAAGCTCACGAAGAGCCAT
* *
86851050 ATATTGAGACGCTCA
1 ATATCGAGAAGCTCA
86851065 TAAGAGCTGC
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
24 1 0.02
25 10 0.19
26 41 0.77
27 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.21
Consensus pattern (26 bp):
ATATCGAGAAGCTCACGAAGAGCCAT
Found at i:86852769 original size:17 final size:16
Alignment explanation
Indices: 86852745--86852776 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
86852735 AACAGAGAAG
86852745 AAAAAGAAAGAAAAGA
1 AAAAAGAAAGAAAAGA
86852761 AAAAGAGAAAGAAAAG
1 AAAA-AGAAAGAAAAG
86852777 GAGAAAAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAGAAAAGA
Found at i:86852776 original size:26 final size:25
Alignment explanation
Indices: 86852728--86852784 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
86852718 AACAAAGTTA
*
86852728 AAAACGAAACAGAGAAGAAAAAGAAAG
1 AAAA-GAAAAAGAGAAGAAAAAG-AAG
*
86852755 AAAAGAAAAAGAGAA-AGAAAAGGAG
1 AAAAGAAAAAGAGAAGA-AAAAGAAG
86852780 AAAAG
1 AAAAG
86852785 CTAGGGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 8 0.30
26 15 0.56
27 4 0.15
ACGTcount: A:0.72, C:0.04, G:0.25, T:0.00
Consensus pattern (25 bp):
AAAAGAAAAAGAGAAGAAAAAGAAG
Found at i:86853567 original size:41 final size:40
Alignment explanation
Indices: 86853519--86853637 Score: 129
Period size: 41 Copynumber: 3.0 Consensus size: 40
86853509 TTCGACATCG
86853519 AGCCGATGAGACACTGGGTGTCAATCTATTACTTCGGATTA
1 AGCCGATGAGACACTGGGTGTCAA-CTATTACTTCGGATTA
** * *
86853560 ATTCGATGATG-CACTGGGTGCCAA-T-TTACTTCGG-TTT
1 AGCCGATGA-GACACTGGGTGTCAACTATTACTTCGGATTA
* *
86853597 AGCCGATGAGACACTAGGTGTCAACTTATTACTTCGAATTA
1 AGCCGATGAGACACTGGGTGTCAAC-TATTACTTCGGATTA
86853638 TCCGATAAGG
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
36 1 0.02
37 20 0.32
38 9 0.15
39 2 0.03
40 8 0.13
41 21 0.34
42 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (40 bp):
AGCCGATGAGACACTGGGTGTCAACTATTACTTCGGATTA
Found at i:86860007 original size:56 final size:56
Alignment explanation
Indices: 86859921--86860033 Score: 199
Period size: 56 Copynumber: 2.0 Consensus size: 56
86859911 AAAAGTAAAG
* *
86859921 GGACTAAGTAAACAATTAAGCCTTAATTAACAAGTGTATGGTGATTGTGTGTACAT
1 GGACTAAATAAACAATTAAGCCTTAATTAACAAGTGAATGGTGATTGTGTGTACAT
*
86859977 GGACTAAATAAGCAATTAAGCCTTAATTAACAAGTGAATGGTGATTGTGTGTACAT
1 GGACTAAATAAACAATTAAGCCTTAATTAACAAGTGAATGGTGATTGTGTGTACAT
86860033 G
1 G
86860034 TAAAAATAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (56 bp):
GGACTAAATAAACAATTAAGCCTTAATTAACAAGTGAATGGTGATTGTGTGTACAT
Found at i:86860224 original size:17 final size:16
Alignment explanation
Indices: 86860200--86860231 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
86860190 AACAGAGAAG
86860200 AAAAAGAAAGAAAAGA
1 AAAAAGAAAGAAAAGA
86860216 AAAAGAGAAAGAAAAG
1 AAAA-AGAAAGAAAAG
86860232 GAGAAAAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAGAAAAGA
Found at i:86860231 original size:26 final size:25
Alignment explanation
Indices: 86860183--86860239 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
86860173 AACAAAGTTA
*
86860183 AAAACGAAACAGAGAAGAAAAAGAAAG
1 AAAA-GAAAAAGAGAAGAAAAAG-AAG
*
86860210 AAAAGAAAAAGAGAA-AGAAAAGGAG
1 AAAAGAAAAAGAGAAGA-AAAAGAAG
86860235 AAAAG
1 AAAAG
86860240 CTAGGGATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 8 0.30
26 15 0.56
27 4 0.15
ACGTcount: A:0.72, C:0.04, G:0.25, T:0.00
Consensus pattern (25 bp):
AAAAGAAAAAGAGAAGAAAAAGAAG
Found at i:86860921 original size:7 final size:7
Alignment explanation
Indices: 86860911--86860937 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
86860901 ATTTATAATT
86860911 AATGTGA
1 AATGTGA
86860918 AATGTGA
1 AATGTGA
86860925 AATGTGA
1 AATGTGA
86860932 AATGTG
1 AATGTG
86860938 GATATTGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.30, T:0.30
Consensus pattern (7 bp):
AATGTGA
Found at i:86861105 original size:41 final size:39
Alignment explanation
Indices: 86861057--86861169 Score: 124
Period size: 37 Copynumber: 2.9 Consensus size: 39
86861047 TTCGACATCG
*
86861057 AGCCGATGAGACACTGGGGGTCAATCTATTACTTCGGATTA
1 AGCCGATGAGACACTGGGTGTCAA-CTATTACTTC-GATTA
** * *
86861098 ATTCGATGATG-CACTGGGTGCCAA-T-TTACTTCGATTT
1 AGCCGATGA-GACACTGGGTGTCAACTATTACTTCGATTA
86861135 AGCCGATGAGACACTGGGTGTCAACTTATTACTTC
1 AGCCGATGAGACACTGGGTGTCAAC-TATTACTTC
86861170 AAATTATTCG
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
36 1 0.02
37 23 0.39
38 7 0.12
39 2 0.03
40 7 0.12
41 18 0.31
42 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (39 bp):
AGCCGATGAGACACTGGGTGTCAACTATTACTTCGATTA
Found at i:86861780 original size:19 final size:20
Alignment explanation
Indices: 86861758--86861798 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
86861748 ATTTAGTGCA
*
86861758 TAAATGTTCATT-AATTAGG
1 TAAATGTTCATTGAACTAGG
*
86861777 TAAATGTTGATTGAACTAGG
1 TAAATGTTCATTGAACTAGG
86861797 TA
1 TA
86861799 GGTTTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.37, C:0.05, G:0.20, T:0.39
Consensus pattern (20 bp):
TAAATGTTCATTGAACTAGG
Found at i:86865818 original size:80 final size:80
Alignment explanation
Indices: 86865685--86865832 Score: 260
Period size: 80 Copynumber: 1.9 Consensus size: 80
86865675 GCAAACACAT
* *
86865685 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCATAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
86865750 TATCATCTCGCATAA
66 TATCATCTCGCATAA
* *
86865765 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCATAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
86865830 TAT
66 TAT
86865833 TCCAATGCTC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (80 bp):
TTGCCTTCGGGTCATAACCCGGACATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TATCATCTCGCATAA
Found at i:86865833 original size:40 final size:40
Alignment explanation
Indices: 86865685--86865832 Score: 233
Period size: 40 Copynumber: 3.7 Consensus size: 40
86865675 GCAAACACAT
* *
86865685 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
* *
86865725 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
* *
86865765 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
*
86865805 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGACATAT
86865833 TCCAATGCTC
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 98 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
Found at i:86868481 original size:13 final size:13
Alignment explanation
Indices: 86868463--86868487 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86868453 AGGATGAGCA
86868463 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
86868476 TTTTTTTTCTTT
1 TTTTTTTTCTTT
86868488 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:86870322 original size:922 final size:922
Alignment explanation
Indices: 86868615--86870458 Score: 3607
Period size: 922 Copynumber: 2.0 Consensus size: 922
86868605 ACTCCTTTTC
86868615 ATTATTTTATGCCCATGCCCCTTATTTTATTTTTTTCCTACATACCTCACTAGGCCAACATGTTC
1 ATTATTTTATGCCCATGCCCCTTATTTTATTTTTTTCCTACATACCTCACTAGGCCAACATGTTC
86868680 CCAACATGTTTCCACCCATAGCATGGCCAACCACTAGCTCAAATTTTGGGTAATTTGACATGCAA
66 CCAACATGTTTCCACCCATAGCATGGCCAACCACTAGCTCAAATTTTGGGTAATTTGACATGCAA
86868745 AGCCATCATTTTCACAACATGCATTAATAGACCATTTTAAATTAGACTATCATATTTTCACCATG
131 AGCCATCATTTTCACAACATGCATTAATAGACCATTTTAAATTAGACTATCATATTTTCACCATG
86868810 TCTCATATCAATCCCTATTTAATAATTTCTAATGCAATTGGCAAAATTGGAGAATGAAACTTCCA
196 TCTCATATCAATCCCTATTTAATAATTTCTAATGCAATTGGCAAAATTGGAGAATGAAACTTCCA
*
86868875 CATACTCATGTACACACATAATAAGCATAGAATATGGAAATCAATTATTTTTATGACTCGGTTTT
261 CATACTCATGTACACACATAATAAGCATAGAATATGGAAACCAATTATTTTTATGACTCGGTTTT
86868940 GTGGTCCCGAAACCACTTCCCGACTAGGGTCAATTTTGGGCTGTCACAACTCTCCCCCACTTAAG
326 GTGGTCCCGAAACCACTTCCCGACTAGGGTCAATTTTGGGCTGTCACAACTCTCCCCCACTTAAG
86869005 AAATTTTCGTCCCCAAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATCGAGCTCTC
391 AAATTTTCGTCCCCAAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATCGAGCTCTC
* * *
86869070 GGTTTCCCAAGTAGCTTCCTCGATCCCGTGTTTGAGCCATAACACCTTCACTAACGGAACCCTTT
456 GGTCTCCCAAGTAGCTTCCTCGATCCCGTGTTTGAGCCATAACACCTTAACTAACGGAACCCTTC
86869135 TGTTTCGCAACTCTTTCACTTCACGAGCTAGGATACGAATCGGTTCTTCTTCATAACTCAAGTCA
521 TGTTTCGCAACTCTTTCACTTCACGAGCTAGGATACGAATCGGTTCTTCTTCATAACTCAAGTCA
86869200 GATTGAATTTCAACTTCCGAGGGTTTAATCACATGTGACGGATCGGATCTATAACGTCGTAGCAT
586 GATTGAATTTCAACTTCCGAGGGTTTAATCACATGTGACGGATCGGATCTATAACGTCGTAGCAT
86869265 CGAAACATGAAAAACATTGTGAATCCTTCCAAGTTCAGGGGGTAAAATCAATCTATATGCCACTG
651 CGAAACATGAAAAACATTGTGAATCCTTCCAAGTTCAGGGGGTAAAATCAATCTATATGCCACTG
86869330 AACCAATTCTTTCGGATATTTCATACGGCCCAATGAATCTTGGGCTCAACTTGCCCTTACGGCCG
716 AACCAATTCTTTCGGATATTTCATACGGCCCAATGAATCTTGGGCTCAACTTGCCCTTACGGCCG
86869395 AACCTGAGTATCTTTTTCCAAGGTGAAACCTTAAGGAACACTCTGTCTCCCACCTGATACTCGAT
781 AACCTGAGTATCTTTTTCCAAGGTGAAACCTTAAGGAACACTCTGTCTCCCACCTGATACTCGAT
86869460 GTCTTTTCGTTTCAAATCTGCGTACGACTTCTGACGATCCGTGGCTACTTTCAGACTTTCACGGA
846 GTCTTTTCGTTTCAAATCTGCGTACGACTTCTGACGATCCGTGGCTACTTTCAGACTTTCACGGA
86869525 TTACCTTTACTT
911 TTACCTTTACTT
86869537 ATTATTTTATGCCCATGCCCCTTATTTTATTTTTTTCCTACATACCTCACTAGGCCAACATGTTC
1 ATTATTTTATGCCCATGCCCCTTATTTTATTTTTTTCCTACATACCTCACTAGGCCAACATGTTC
86869602 CCAACATGTTTCCACCCATAGCATGGCCAACCACTAGCTCAAATTTTGGGTAATTTGACATGCAA
66 CCAACATGTTTCCACCCATAGCATGGCCAACCACTAGCTCAAATTTTGGGTAATTTGACATGCAA
*
86869667 AGCCATCATTTTCACAACATGCATTAATAGACCATTTTAAATTAGCCTATCATATTTTCACCATG
131 AGCCATCATTTTCACAACATGCATTAATAGACCATTTTAAATTAGACTATCATATTTTCACCATG
*
86869732 TCTCATATCAATCCCTATTTAATAATTTCTCATGCAATTGGCAAAATTGGAGAATGAAACTTCCA
196 TCTCATATCAATCCCTATTTAATAATTTCTAATGCAATTGGCAAAATTGGAGAATGAAACTTCCA
86869797 CATACTCATGTACACACATAATAAGCATAGAATATGGAAACCAATTATTTTTATGACTCGGTTTT
261 CATACTCATGTACACACATAATAAGCATAGAATATGGAAACCAATTATTTTTATGACTCGGTTTT
86869862 GTGGTCCCGAAACCACTTCCCGACTAGGGTCAATTTTGGGCTGTCACAACTCTCCCCCACTTAAG
326 GTGGTCCCGAAACCACTTCCCGACTAGGGTCAATTTTGGGCTGTCACAACTCTCCCCCACTTAAG
* *
86869927 AAATTTTCGTCCCCGAAAATCTTACCGGTGAATAGGTTTGGGTATCGTTCTTTCATCGAGCTCTC
391 AAATTTTCGTCCCCAAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATCGAGCTCTC
*
86869992 GGTCTCCCAAGTTGCTTCCTCGATCCCGTGTTTGAGCCATAACACCTTAACTAACGGAACCCTTC
456 GGTCTCCCAAGTAGCTTCCTCGATCCCGTGTTTGAGCCATAACACCTTAACTAACGGAACCCTTC
86870057 TGTTTCGCAACTCTTTCACTTCACGAGCTAGGATACGAATCGGTTCTTCTTCATAACTCAAGTCA
521 TGTTTCGCAACTCTTTCACTTCACGAGCTAGGATACGAATCGGTTCTTCTTCATAACTCAAGTCA
86870122 GATTGAATTTCAACTTCCGAGGGTTTAATCACATGTGACGGATCGGATCTATAACGTCGTAGCAT
586 GATTGAATTTCAACTTCCGAGGGTTTAATCACATGTGACGGATCGGATCTATAACGTCGTAGCAT
86870187 CGAAACATGAAAAACATTGTGAATCCTTCCAAGTTCAGGGGGTAAAATCAATCTATATGCCACTG
651 CGAAACATGAAAAACATTGTGAATCCTTCCAAGTTCAGGGGGTAAAATCAATCTATATGCCACTG
86870252 AACCAATTCTTTCGGATATTTCATACGGCCCAATGAATCTTGGGCTCAACTTGCCCTTACGGCCG
716 AACCAATTCTTTCGGATATTTCATACGGCCCAATGAATCTTGGGCTCAACTTGCCCTTACGGCCG
86870317 AACCTGAGTATCTTTTTCCAAGGTGAAACCTTAAGGAACACTCTGTCTCCCACCTGATACTCGAT
781 AACCTGAGTATCTTTTTCCAAGGTGAAACCTTAAGGAACACTCTGTCTCCCACCTGATACTCGAT
86870382 GTCTTTTCGTTTCAAATCTGCGTACGACTTCTGACGATCCGTGGCTACTTTCAGACTTTCACGGA
846 GTCTTTTCGTTTCAAATCTGCGTACGACTTCTGACGATCCGTGGCTACTTTCAGACTTTCACGGA
86870447 TTACCTTTACTT
911 TTACCTTTACTT
86870459 TCTGTTCAGC
Statistics
Matches: 913, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
922 913 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (922 bp):
ATTATTTTATGCCCATGCCCCTTATTTTATTTTTTTCCTACATACCTCACTAGGCCAACATGTTC
CCAACATGTTTCCACCCATAGCATGGCCAACCACTAGCTCAAATTTTGGGTAATTTGACATGCAA
AGCCATCATTTTCACAACATGCATTAATAGACCATTTTAAATTAGACTATCATATTTTCACCATG
TCTCATATCAATCCCTATTTAATAATTTCTAATGCAATTGGCAAAATTGGAGAATGAAACTTCCA
CATACTCATGTACACACATAATAAGCATAGAATATGGAAACCAATTATTTTTATGACTCGGTTTT
GTGGTCCCGAAACCACTTCCCGACTAGGGTCAATTTTGGGCTGTCACAACTCTCCCCCACTTAAG
AAATTTTCGTCCCCAAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATCGAGCTCTC
GGTCTCCCAAGTAGCTTCCTCGATCCCGTGTTTGAGCCATAACACCTTAACTAACGGAACCCTTC
TGTTTCGCAACTCTTTCACTTCACGAGCTAGGATACGAATCGGTTCTTCTTCATAACTCAAGTCA
GATTGAATTTCAACTTCCGAGGGTTTAATCACATGTGACGGATCGGATCTATAACGTCGTAGCAT
CGAAACATGAAAAACATTGTGAATCCTTCCAAGTTCAGGGGGTAAAATCAATCTATATGCCACTG
AACCAATTCTTTCGGATATTTCATACGGCCCAATGAATCTTGGGCTCAACTTGCCCTTACGGCCG
AACCTGAGTATCTTTTTCCAAGGTGAAACCTTAAGGAACACTCTGTCTCCCACCTGATACTCGAT
GTCTTTTCGTTTCAAATCTGCGTACGACTTCTGACGATCCGTGGCTACTTTCAGACTTTCACGGA
TTACCTTTACTT
Found at i:86879831 original size:39 final size:39
Alignment explanation
Indices: 86879779--86879899 Score: 217
Period size: 39 Copynumber: 3.1 Consensus size: 39
86879769 AAAGCATACC
86879779 TACCTCAAAGCATACCTCTACTTGGTCTCATTATAAACA
1 TACCTCAAAGCATACCTCTACTTGGTCTCATTATAAACA
86879818 TACCTCAAAGCATACCTCCT-CTTGGTCTCATTATAAACA
1 TACCTCAAAGCATACCT-CTACTTGGTCTCATTATAAACA
*
86879857 TACCTCAAAGCATACCTCCACTTGGTCTCATTATAAACA
1 TACCTCAAAGCATACCTCTACTTGGTCTCATTATAAACA
86879896 TACC
1 TACC
86879900 AAATGGTCGT
Statistics
Matches: 79, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
38 1 0.01
39 76 0.96
40 2 0.03
ACGTcount: A:0.32, C:0.31, G:0.07, T:0.30
Consensus pattern (39 bp):
TACCTCAAAGCATACCTCTACTTGGTCTCATTATAAACA
Found at i:86881989 original size:19 final size:19
Alignment explanation
Indices: 86881965--86882004 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
86881955 TAATTTAGAC
86881965 TGTAAAATAATGTACTTTA
1 TGTAAAATAATGTACTTTA
86881984 TGTAAAATAATGTACTTTA
1 TGTAAAATAATGTACTTTA
86882003 TG
1 TG
86882005 CAATTTAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.42
Consensus pattern (19 bp):
TGTAAAATAATGTACTTTA
Found at i:86883124 original size:69 final size:69
Alignment explanation
Indices: 86883013--86883288 Score: 543
Period size: 69 Copynumber: 4.0 Consensus size: 69
86883003 TGTGGCCCCG
86883013 AAGCCATTATTTTCGACACCACTGAAAAATGAGCTATTACGACTCTCCCTCTTACAAAAATTTCG
1 AAGCCATTATTTTCGACACCACTGAAAAATGAGCTATTACGACTCTCCCTCTTACAAAAATTTCG
86883078 TCTT
66 TCTT
86883082 AAGCCATTATTTTCGACACCACTGAAAAATGAGCTATTACGACTCTCCCTCTTACAAAAATTTCG
1 AAGCCATTATTTTCGACACCACTGAAAAATGAGCTATTACGACTCTCCCTCTTACAAAAATTTCG
86883147 TCTT
66 TCTT
*
86883151 AAGCCATTATTTTCGACACCACTGAAAAATGAGCTATTACGACTCTCCCTCTTACAAAAATTTTG
1 AAGCCATTATTTTCGACACCACTGAAAAATGAGCTATTACGACTCTCCCTCTTACAAAAATTTCG
86883216 TCTT
66 TCTT
86883220 AAGCCATTATTTTCGACACCACTGAAAAATGAGCTATTACGACTCTCCCTCTTACAAAAATTTCG
1 AAGCCATTATTTTCGACACCACTGAAAAATGAGCTATTACGACTCTCCCTCTTACAAAAATTTCG
86883285 TCTT
66 TCTT
86883289 CGAAATTTTT
Statistics
Matches: 205, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 205 1.00
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (69 bp):
AAGCCATTATTTTCGACACCACTGAAAAATGAGCTATTACGACTCTCCCTCTTACAAAAATTTCG
TCTT
Found at i:86885055 original size:137 final size:138
Alignment explanation
Indices: 86884801--86885069 Score: 328
Period size: 137 Copynumber: 2.0 Consensus size: 138
86884791 TATATGGGTA
* * * * *
86884801 TGCTCACACAAGCTATCGGTCGGAATGTAAGCTACACAATGCTTCTCACACAAGTTGTCGAGTAT
1 TGCTCACACAAGCTACCGGTCGGAATGTAAGCTACACAATACTGCTCACACAAGCTGTCAAGTAT
* * * ** * *
86884866 CTGCAACTAATGTCAGACCTCAGCCATCGGTCGGACATTCAAGACAAACACCCGAAACATGGTAA
66 CTGCAACTAATGCCAGAACTCAGCCACCAATAGGACATTCAAGACAAACACCCAAAACATGGTAA
86884931 CCTTGGTC
131 CCTTGGTC
* * *
86884939 TGCTCACACAAGTTGCCGGTCGGAATGT-AGCTACACGATACTGCTCACACAAGCTGTCAAGTAT
1 TGCTCACACAAGCTACCGGTCGGAATGTAAGCTACACAATACTGCTCACACAAGCTGTCAAGTAT
* * * *
86885003 CTGCAAC-ACATGCCGGAAGTCAGCCACCAATAGGACATT-AAGGACCAGCACCCAAAACATGGT
66 CTGCAACTA-ATGCCAGAACTCAGCCACCAATAGGACATTCAA-GACAAACACCCAAAACATGGT
86885066 AACC
129 AACC
86885070 CTAATGACAC
Statistics
Matches: 110, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
136 3 0.03
137 82 0.75
138 25 0.23
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (138 bp):
TGCTCACACAAGCTACCGGTCGGAATGTAAGCTACACAATACTGCTCACACAAGCTGTCAAGTAT
CTGCAACTAATGCCAGAACTCAGCCACCAATAGGACATTCAAGACAAACACCCAAAACATGGTAA
CCTTGGTC
Found at i:86887168 original size:12 final size:12
Alignment explanation
Indices: 86887148--86887179 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
86887138 CATTCCGAAG
*
86887148 TATATATATATA
1 TATACATATATA
86887160 TATACATATATA
1 TATACATATATA
86887172 TATACATA
1 TATACATA
86887180 AGTATGCCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (12 bp):
TATACATATATA
Found at i:86887710 original size:27 final size:28
Alignment explanation
Indices: 86887626--86887723 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
86887616 CATGAGATTG
* * * *
86887626 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
86887655 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
86887683 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
86887710 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
86887724 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:86887734 original size:27 final size:27
Alignment explanation
Indices: 86887654--86887736 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
86887644 TAAATTGTAC
* *
86887654 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
86887682 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
86887709 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
86887736 A
1 A
86887737 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:86894757 original size:14 final size:14
Alignment explanation
Indices: 86894738--86894767 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
86894728 GAACTACCTG
86894738 CTGAACCACTAACA
1 CTGAACCACTAACA
*
86894752 CTGAACCACTAGCA
1 CTGAACCACTAACA
86894766 CT
1 CT
86894768 AACAACAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.37, G:0.10, T:0.17
Consensus pattern (14 bp):
CTGAACCACTAACA
Found at i:86896204 original size:20 final size:20
Alignment explanation
Indices: 86896179--86896231 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
86896169 AAATGTCCGT
86896179 AGGTATCGATACTGACATTA
1 AGGTATCGATACTGACATTA
* *
86896199 AGGTATCGATA-TTACTTTA
1 AGGTATCGATACTGACATTA
86896218 ACTGGTATCGATAC
1 A--GGTATCGATAC
86896232 CACTTGGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 7 0.25
20 11 0.39
21 10 0.36
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (20 bp):
AGGTATCGATACTGACATTA
Found at i:86902497 original size:314 final size:314
Alignment explanation
Indices: 86901928--86902558 Score: 1199
Period size: 314 Copynumber: 2.0 Consensus size: 314
86901918 GGAAAATTAA
86901928 GGTAGGCAAACAAGTTAATATAAGTGCTTCCTATAGTGTTATTATTTTGAGACAAGTTCCTCAGA
1 GGTAGGCAAACAAGTTAATATAAGTGCTTCCTATAGTGTTATTATTTTGAGACAAGTTCCTCAGA
*
86901993 AATTGAAAGACCATGAAGTTTTACTATTCCCATAGAGATAGAGAGCATTCACTTTTATAAAGCTC
66 AATTGAAAGACCATGAAGTTTTACTATTCCCATAGAGATAGAGAGCATTCACTTTAATAAAGCTC
86902058 TATGTGATGTAGAAGCTAGTATTAATTTATCGCCTTTATCCATTTTTGAATAACTTGGGTTAGGG
131 TATGTGATGTAGAAGCTAGTATTAATTTATCGCCTTTATCCATTTTTGAATAACTTGGGTTAGGG
*
86902123 GACCTCAAAAATACCTAGATAACACTACAGTTGGTCGAAAGATCCTCAGTGCATCCGAAAGGAGT
196 GACCTAAAAAATACCTAGATAACACTACAGTTGGTCGAAAGATCCTCAGTGCATCCGAAAGGAGT
* **
86902188 ATTGGAAGATGTGTTAGCCAAAGTGCGTCGTTTTATCATCCCAACAGATTTTAT
261 ATTGGAAGATATGTTAGCCAAAGTGCGTCACTTTATCATCCCAACAGATTTTAT
86902242 GGTAGGCAAACAAGTTAATATAAGTGCTTCCTATAGTGTTATTATTTTGAGACAAGTTCCTCAGA
1 GGTAGGCAAACAAGTTAATATAAGTGCTTCCTATAGTGTTATTATTTTGAGACAAGTTCCTCAGA
86902307 AATTGAAAGACCATGAAGTTTTACTATTCCCATAGAGATAGAGAGCATTCACTTTAATAAAGCTC
66 AATTGAAAGACCATGAAGTTTTACTATTCCCATAGAGATAGAGAGCATTCACTTTAATAAAGCTC
* *
86902372 TATGTGATGTAGAAGCTAGTCTTAATTTATTGCCTTTATCCATTTTTGAATAACTTGGGTTAGGG
131 TATGTGATGTAGAAGCTAGTATTAATTTATCGCCTTTATCCATTTTTGAATAACTTGGGTTAGGG
86902437 GACCTAAAAAATACCTAGATAACACTACAGTTGGTCGAAAGATCCTCAGTGCATCCGAAAGGAGT
196 GACCTAAAAAATACCTAGATAACACTACAGTTGGTCGAAAGATCCTCAGTGCATCCGAAAGGAGT
86902502 ATTGGAAGATATGTTAGCCAAAGTGCGTCACTTTATCATCCCAACAGATTTTAT
261 ATTGGAAGATATGTTAGCCAAAGTGCGTCACTTTATCATCCCAACAGATTTTAT
86902556 GGT
1 GGT
86902559 TCTGGACTTT
Statistics
Matches: 310, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
314 310 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (314 bp):
GGTAGGCAAACAAGTTAATATAAGTGCTTCCTATAGTGTTATTATTTTGAGACAAGTTCCTCAGA
AATTGAAAGACCATGAAGTTTTACTATTCCCATAGAGATAGAGAGCATTCACTTTAATAAAGCTC
TATGTGATGTAGAAGCTAGTATTAATTTATCGCCTTTATCCATTTTTGAATAACTTGGGTTAGGG
GACCTAAAAAATACCTAGATAACACTACAGTTGGTCGAAAGATCCTCAGTGCATCCGAAAGGAGT
ATTGGAAGATATGTTAGCCAAAGTGCGTCACTTTATCATCCCAACAGATTTTAT
Found at i:86908290 original size:14 final size:14
Alignment explanation
Indices: 86908273--86908301 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86908263 TGTCACTCAT
86908273 ATGCCTAATGTCTC
1 ATGCCTAATGTCTC
86908287 ATGCCTAATGTCTC
1 ATGCCTAATGTCTC
86908301 A
1 A
86908302 CCCTCAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (14 bp):
ATGCCTAATGTCTC
Found at i:86913297 original size:556 final size:555
Alignment explanation
Indices: 86911843--86913809 Score: 3052
Period size: 555 Copynumber: 3.6 Consensus size: 555
86911833 GTCTAAAAAT
*
86911843 TTTAATTTTTGTTCAAATCTAATTTATT-TTTTTCTATTTGTCTATATTTTTGCAGAATAATTAA
1 TTTAATTTTTGTTCAAATCTAATTTATTCTTTTTCTATTTGTCTATATTTTTGCAGAATAATTAG
*
86911907 GCACCATTGTCGACGCACTTGGGTTTTATTGTCAACGTAGTTCGTACTATTGTACTGTCACGTCT
66 GCACCATTGTCGACGCACTTGGGCTTTATTGTCAACGTAGTTCGTACTATTGTACTGTCACGTCT
* *
86911972 GACTCAGCAAAATTGAGGATAGATCAAAAATTTCCA-ATCCTACCGTTTGATCAAAAGCAACCTG
131 GACTCAGCAAAAATGAGGATAGATCAAAAATTT-CAGATCCTACCGTTTGATCAAAAGCAACCTA
* * *
86912036 GCCGTGTGATTTTTCTGAGCGGGCACAATTCTCATTTGGCGTAATTATTCCCGCCAGCTTTATAT
195 GCCGTGTGATTTGTCTGAGCGGGCACAATTCTCATTGGGCATAATTATTCCCGCCAGCTTTATAT
* * * *
86912101 CCCCTCACAGAAATCACGTCTTTCCAGCTTTTTCTTTCACTCACTATAAACCCCTCTTCACTATG
260 CCCTTCACAAAAATCACGTCTTTCCAGCTTCTTCTTTCACTCACTATAAACCCCTCTTCACTGTG
* * * *
86912166 CTAAAGCTGCACTTGGGTAAATTGTGCTCTCATCGGTCTGGACCTTTCAAACTTGTTGAAGTATT
325 CTAAAGCTGCA-TCGGGTAAATTGTGCTCTCGTTGGTCTGGACCTTTCCAACTTGTTGAAGTATT
86912231 TTCTCATGGTGCAGTCACAATCAGAGATTTAAATAATGGACACCAATTCAAAGTGAATGGCCAGC
389 TTCTCATGGTGCAGTCACAATCAGAGATTTAAATAATGGACACCAATTCAAAGTGAATGGCCAGC
* * *
86912296 GATTGAAACATTATCTTGGGTATACTGATCACAAGCAGGTAGAGACCATTAGACTGGTCTAAAAA
454 GATTGAAACATTATCTTGGGAATACTGATCACAAGCAGGTAGAGACCATTAAACTGGTCGAAAAA
86912361 TTTTAATTTTTAGTGAATTTATCATTATGTTATTTTA
519 TTTTAATTTTTAGTGAATTTATCATTATGTTATTTTA
* * *
86912398 TTTCATTTTTGTTCAAATCTGATTTATTCTTTTTCTATTT-TCTATATTTTTGCAAAATAATTAG
1 TTTAATTTTTGTTCAAATCTAATTTATTCTTTTTCTATTTGTCTATATTTTTGCAGAATAATTAG
* * *
86912462 GCACAATTGTCGACGCACTTGGGCTTTATTGTCAACGTAGTTTGTACTATTGTACTGTTACGTCT
66 GCACCATTGTCGACGCACTTGGGCTTTATTGTCAACGTAGTTCGTACTATTGTACTGTCACGTCT
* *
86912527 GACTTAGCAAAAATGAGGATAGATCAAAAATTTCATATCCTACCGTTTGATCAAAAGCAACCTAG
131 GACTCAGCAAAAATGAGGATAGATCAAAAATTTCAGATCCTACCGTTTGATCAAAAGCAACCTAG
* * * *
86912592 CAGTGTGATTTGTCTGAGTGGGCAGAATTCTCATTGGGCATAATTATTCCAGCCAGCTTTATATC
196 CCGTGTGATTTGTCTGAGCGGGCACAATTCTCATTGGGCATAATTATTCCCGCCAGCTTTATATC
* *
86912657 CATTCACAAAAATCACGTCTTTCTAGCTTCTTCTTTCACTCACTATAAACCCCTCTTCACTGTGC
261 CCTTCACAAAAATCACGTCTTTCCAGCTTCTTCTTTCACTCACTATAAACCCCTCTTCACTGTGC
* *
86912722 TAAAGCTGCACCTGGGTAAATTGTGCTCTCGTTGGTCTGGACCTTTCCAACTTGTTGAAGCATTT
326 TAAAGCTGCATC-GGGTAAATTGTGCTCTCGTTGGTCTGGACCTTTCCAACTTGTTGAAGTATTT
*
86912787 TCTCATGGTGCAATCACAATCAGAGATTTAAATAATGGACACCAATTCAAAGTGAATGGCCAGCG
390 TCTCATGGTGCAGTCACAATCAGAGATTTAAATAATGGACACCAATTCAAAGTGAATGGCCAGCG
*
86912852 ATTGAAACATTATCTTGGGAATACTGATCACAAGCAGGTATAGACCATTAAACTGGTCGAAAAAT
455 ATTGAAACATTATCTTGGGAATACTGATCACAAGCAGGTAGAGACCATTAAACTGGTCGAAAAAT
86912917 TTTAATTTTTAGTGAATTTATCATTATGTTATTTTA
520 TTTAATTTTTAGTGAATTTATCATTATGTTATTTTA
*
86912953 TTTAATTTTTGTTCAAATCTAATTTATTCTTTTTCTATTTGTCAATATTTTTGCAGAATAATTAG
1 TTTAATTTTTGTTCAAATCTAATTTATTCTTTTTCTATTTGTCTATATTTTTGCAGAATAATTAG
*
86913018 GCACCATTGTCGACGCACTTGGGCTTTATTGTCAACGTAGTTCGTACTATTGTACTGTCACGTAT
66 GCACCATTGTCGACGCACTTGGGCTTTATTGTCAACGTAGTTCGTACTATTGTACTGTCACGTCT
* * *
86913083 GACTTAGCAAAAATGAGGATAGATCAAAAATTTCAGATCCTATCGTTTGATCAAAAGAAACCTAG
131 GACTCAGCAAAAATGAGGATAGATCAAAAATTTCAGATCCTACCGTTTGATCAAAAGCAACCTAG
* * * *
86913148 CTGTGTGATTTGACTGAGCGGGCACAATTCTCATTGGGCGTAATTATTCCCGCTAGCTTTATATC
196 CCGTGTGATTTGTCTGAGCGGGCACAATTCTCATTGGGCATAATTATTCCCGCCAGCTTTATATC
* *
86913213 CCTTCACAAAAATCACATATTTCCAGCTTCTTCTTTCACTCACTATAAACCCCTCTTCACTGTGC
261 CCTTCACAAAAATCACGTCTTTCCAGCTTCTTCTTTCACTCACTATAAACCCCTCTTCACTGTGC
86913278 TAAAGCTGCATACGGGTAAATTGTGCTCTCGTTGGTCTGGACCTTTCCAACTTGTTGAAGTATTT
326 TAAAGCTGCAT-CGGGTAAATTGTGCTCTCGTTGGTCTGGACCTTTCCAACTTGTTGAAGTATTT
*
86913343 TCTCATGGTGTAGTCACAATCAGAGATTTAAATAATGGACACCAATTCAAAGTGAATGG-C--C-
390 TCTCATGGTGCAGTCACAATCAGAGATTTAAATAATGGACACCAATTCAAAGTGAATGGCCAGCG
86913404 A--G---------C-----AAT--TGA--ACAAGCAGGTAGAGACCATTAAACTGGTCGAAAAAT
455 ATTGAAACATTATCTTGGGAATACTGATCACAAGCAGGTAGAGACCATTAAACTGGTCGAAAAAT
* *
86913449 TTCAATTTTTAGTGAATTTATCATTTTGTTATTTTA
520 TTTAATTTTTAGTGAATTTATCATTATGTTATTTTA
* * * *
86913485 TTTTATTTTTGTTCAAATCTGATTTATTCTTTTTCTATTTGTCTATATATTTGTAGAATAATTAG
1 TTTAATTTTTGTTCAAATCTAATTTATTCTTTTTCTATTTGTCTATATTTTTGCAGAATAATTAG
*
86913550 GCACCATTGTCGACGCACTTGGGCTTTATTGTCAACGTAGTTTGTACTATTGTACTGTCACGTCT
66 GCACCATTGTCGACGCACTTGGGCTTTATTGTCAACGTAGTTCGTACTATTGTACTGTCACGTCT
* * * * * *
86913615 CACTCAGCAAAAATGAAGACAGATTAAAAATTTTAGATCCTATCGTTTGATCAAAAGCAACCTAG
131 GACTCAGCAAAAATGAGGATAGATCAAAAATTTCAGATCCTACCGTTTGATCAAAAGCAACCTAG
* * * * * *
86913680 CCATCTAATTTGTCTAAGCGGGCACAATTCTCATTGGACATAATTATTCCCACCAGCTTTATATC
196 CCGTGTGATTTGTCTGAGCGGGCACAATTCTCATTGGGCATAATTATTCCCGCCAGCTTTATATC
* * * ** *
86913745 CCTTCACAAAAATCATGTCTTTCCATCTTCTTCTTTCAGTCACTATAAACCTTTCTTCATTGTGC
261 CCTTCACAAAAATCACGTCTTTCCAGCTTCTTCTTTCACTCACTATAAACCCCTCTTCACTGTGC
86913810 CGACTGTAAA
Statistics
Matches: 1311, Mismatches: 96, Indels: 33
0.91 0.07 0.02
Matches are distributed among these distances:
532 362 0.28
534 3 0.00
536 3 0.00
541 1 0.00
550 1 0.00
552 1 0.00
553 1 0.00
554 2 0.00
555 543 0.41
556 393 0.30
557 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (555 bp):
TTTAATTTTTGTTCAAATCTAATTTATTCTTTTTCTATTTGTCTATATTTTTGCAGAATAATTAG
GCACCATTGTCGACGCACTTGGGCTTTATTGTCAACGTAGTTCGTACTATTGTACTGTCACGTCT
GACTCAGCAAAAATGAGGATAGATCAAAAATTTCAGATCCTACCGTTTGATCAAAAGCAACCTAG
CCGTGTGATTTGTCTGAGCGGGCACAATTCTCATTGGGCATAATTATTCCCGCCAGCTTTATATC
CCTTCACAAAAATCACGTCTTTCCAGCTTCTTCTTTCACTCACTATAAACCCCTCTTCACTGTGC
TAAAGCTGCATCGGGTAAATTGTGCTCTCGTTGGTCTGGACCTTTCCAACTTGTTGAAGTATTTT
CTCATGGTGCAGTCACAATCAGAGATTTAAATAATGGACACCAATTCAAAGTGAATGGCCAGCGA
TTGAAACATTATCTTGGGAATACTGATCACAAGCAGGTAGAGACCATTAAACTGGTCGAAAAATT
TTAATTTTTAGTGAATTTATCATTATGTTATTTTA
Found at i:86915802 original size:16 final size:16
Alignment explanation
Indices: 86915781--86915811 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86915771 GTTAGTGCAC
*
86915781 ATTGTCATTGCATTTT
1 ATTGTCATCGCATTTT
86915797 ATTGTCATCGCATTT
1 ATTGTCATCGCATTT
86915812 AATGTTAGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (16 bp):
ATTGTCATCGCATTTT
Found at i:86924967 original size:43 final size:43
Alignment explanation
Indices: 86924901--86924985 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
86924891 AAGTCGTACA
*
86924901 ATGCCAATGTCCCAGACGTGGTCTTACAT-GTAATCACATATTG
1 ATGCCAATGTCCCAGACGTGGTCTTAC-TCGTAAACACATATTG
*
86924944 ATGCCACTGTCCCAGACAG-GGTCTTACTCGTAAACACATATT
1 ATGCCAATGTCCCAGAC-GTGGTCTTACTCGTAAACACATATT
86924986 AGAATCACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 1 0.03
43 36 0.95
44 1 0.03
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACTCGTAAACACATATTG
Found at i:86931149 original size:39 final size:39
Alignment explanation
Indices: 86931095--86931219 Score: 205
Period size: 39 Copynumber: 3.2 Consensus size: 39
86931085 AGTGATGAAG
*
86931095 TATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
86931134 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* * *
86931173 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
86931212 TATGTCCG
1 TATATCCG
86931220 AGCTAAAGTC
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:86931234 original size:39 final size:39
Alignment explanation
Indices: 86931095--86931258 Score: 199
Period size: 39 Copynumber: 4.2 Consensus size: 39
86931085 AGTGATGAAG
* *
86931095 TATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
*
86931134 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* *
86931173 TATAACCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * * * *
86931212 TATGTCC-GAGC-TAAAGTCCCGCAGGCTTCGAGCTGGTAT
1 TATATCCGGA-CTTAAGGT-CCGCAGGCTACGTGCTGGAAT
86931251 TATA-CCGG
1 TATATCCGG
86931259 GTTTAAATTC
Statistics
Matches: 110, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
38 9 0.08
39 101 0.92
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
Found at i:86934245 original size:26 final size:27
Alignment explanation
Indices: 86934216--86934269 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
86934206 TCACACAAGT
86934216 TAGTCATTT-ACACACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
86934242 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
86934269 T
1 T
86934270 GGTAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:86934300 original size:27 final size:27
Alignment explanation
Indices: 86934270--86934442 Score: 159
Period size: 27 Copynumber: 6.4 Consensus size: 27
86934260 GGGGCAAAAT
* *
86934270 GGTAATTTTACCCCACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
86934297 GGTAATTCTACCTTAC-AGAGGAATTTT
1 GGTAATTCTACCCTACAAG-GGTATTTC
* * * *
86934324 GGTCATTCTATCTTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
86934351 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
86934378 AATAATTCTACCCTACAGGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
86934405 GGTAATTCTACCTTACAGGGGGATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
86934432 GGTAATTCTAC
1 GGTAATTCTAC
86934443 AACTTATCCA
Statistics
Matches: 121, Mismatches: 23, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
26 2 0.02
27 117 0.97
28 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:86934386 original size:54 final size:54
Alignment explanation
Indices: 86934270--86934442 Score: 193
Period size: 54 Copynumber: 3.2 Consensus size: 54
86934260 GGGGCAAAAT
* * * *
86934270 GGTAATTTTACCCCACAAGGGTATTTCGGTAATTCTACCTTACAGAGGAATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGAATTTC
* * * * ** * *
86934324 GGTCATTCTATCTTATAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGAATTTC
** * * *
86934378 AATAATTCTACCCTACAGGGGTATCTCGGTAATTCTACCTTACAGGGGGATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGAATTTC
86934432 GGTAATTCTAC
1 GGTAATTCTAC
86934443 AACTTATCCA
Statistics
Matches: 93, Mismatches: 26, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
54 93 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGAATTTC
Found at i:86934413 original size:81 final size:81
Alignment explanation
Indices: 86934272--86934442 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 81
86934262 GGCAAAATGG
* ** * * * * *
86934272 TAATTTTACCCCACAAGGGTATTTCGGTAATTCTACCTTACAGAGGAATTTTGGTCATTCTATCT
1 TAATTCTACCCCACAAGGGTATTTCAATAATTCTACCCTACAGAGGAATCTCGGTAATTCTACCT
* *
86934337 TATAAGGGTATTTCAA
66 TACAAGGGGATTTCAA
* * * *
86934353 TAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATCTCGGTAATTCTACCT
1 TAATTCTACCCCACAAGGGTATTTCAATAATTCTACCCTACAGAGGAATCTCGGTAATTCTACCT
* **
86934418 TACAGGGGGATTTCGG
66 TACAAGGGGATTTCAA
86934434 TAATTCTAC
1 TAATTCTAC
86934443 AACTTATCCA
Statistics
Matches: 73, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (81 bp):
TAATTCTACCCCACAAGGGTATTTCAATAATTCTACCCTACAGAGGAATCTCGGTAATTCTACCT
TACAAGGGGATTTCAA
Found at i:86940607 original size:26 final size:27
Alignment explanation
Indices: 86940578--86940631 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
86940568 TCACACAAGT
*
86940578 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
86940604 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
86940631 T
1 T
86940632 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:86940662 original size:27 final size:27
Alignment explanation
Indices: 86940632--86940829 Score: 218
Period size: 27 Copynumber: 7.4 Consensus size: 27
86940622 GGGGCAAAAT
* * * *
86940632 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
86940659 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
86940686 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
86940713 GATAATTCTATCCAACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
86940740 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
** * * *
86940767 AATAATTTTATCTTAC-GGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
86940793 GGTAATTCTACCTTACAGCGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
86940820 GATAATTCTA
1 GGTAATTCTA
86940830 TAACTTATCC
Statistics
Matches: 141, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 21 0.15
27 120 0.85
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:86940734 original size:54 final size:54
Alignment explanation
Indices: 86940632--86940830 Score: 249
Period size: 54 Copynumber: 3.7 Consensus size: 54
86940622 GGGGCAAAAT
* * * * * *
86940632 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTTC
* *
86940686 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCTATCCAACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTTC
* ** * *
86940740 GGTAATTCTACCCTACAGGGGTATTTTAATAATTTTATCTTAC-GGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTTC
*
86940793 GGTAATTCTACCTTAC-AGCGGTATTTCGATAATTCTAT
1 GGTAATTCTACCCTACAAG-GGTATTTCGATAATTCTAT
86940831 AACTTATCCA
Statistics
Matches: 124, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
52 1 0.01
53 41 0.33
54 82 0.66
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGATAATTCTATCCTACAGGGGTATTTC
Found at i:86947239 original size:42 final size:42
Alignment explanation
Indices: 86947180--86947263 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
86947170 ATTTTAATAC
86947180 TATTTGGTCCTTACATATTCACCTATCATATGTTCTTAAGTT
1 TATTTGGTCCTTACATATTCACCTATCATATGTTCTTAAGTT
*
86947222 TATTTGGTCCTTACATATTCACCTATCATATTTTCTTAAGTT
1 TATTTGGTCCTTACATATTCACCTATCATATGTTCTTAAGTT
86947264 CTCAACTAAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.24, C:0.19, G:0.08, T:0.49
Consensus pattern (42 bp):
TATTTGGTCCTTACATATTCACCTATCATATGTTCTTAAGTT
Found at i:86953580 original size:42 final size:42
Alignment explanation
Indices: 86953521--86953602 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
86953511 CAGAGATTCA
86953521 GTATTTGCCCATACATAATTTAAAATTTAACTTTTAAACTCG
1 GTATTTGCCCATACATAATTTAAAATTTAACTTTTAAACTCG
86953563 GTATTTGCCCATACATAATTTAAAATTTAACTTTTAAACT
1 GTATTTGCCCATACATAATTTAAAATTTAACTTTTAAACT
86953603 TAATGCATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.37, C:0.16, G:0.06, T:0.41
Consensus pattern (42 bp):
GTATTTGCCCATACATAATTTAAAATTTAACTTTTAAACTCG
Found at i:86953621 original size:42 final size:41
Alignment explanation
Indices: 86953528--86953621 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 41
86953518 TCAGTATTTG
* * * *
86953528 CCCATACATAATTTAAAATTTAACTTTTAAACTCGGTATTT
1 CCCAAACATAATTTAAAATTTAACTTTTAAACTAGGCATAT
* *
86953569 GCCCATACATAATTTAAAATTTAACTTTTAAACTTAATGCATAT
1 -CCCAAACATAATTTAAAATTTAACTTTTAAAC-T-AGGCATAT
86953613 -CCAAACATA
1 CCCAAACATA
86953622 CTTTTCATCT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
42 40 0.89
43 1 0.02
44 4 0.09
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.37
Consensus pattern (41 bp):
CCCAAACATAATTTAAAATTTAACTTTTAAACTAGGCATAT
Found at i:86958326 original size:39 final size:39
Alignment explanation
Indices: 86958272--86958387 Score: 196
Period size: 39 Copynumber: 3.0 Consensus size: 39
86958262 AGTGATGAAG
86958272 TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
86958311 TATATCTGGACTTAAGGTCTGCAAGCTATGTGCTGGAAT
1 TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
86958350 TATAACTGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
86958388 ATATGTCCGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:86958424 original size:78 final size:78
Alignment explanation
Indices: 86958272--86958431 Score: 189
Period size: 78 Copynumber: 2.1 Consensus size: 78
86958262 AGTGATGAAG
* * * * * *
86958272 TATATCTGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATATCTGGACTTAAGGTCTGCAAGC
1 TATAACTGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAAGC
*
86958337 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* * *
86958350 TATAACTGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCATG
1 TATAACTGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAAG
*
86958414 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
86958428 TATA
1 TATA
86958432 CCGGGTTTAA
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
77 6 0.09
78 63 0.91
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.29
Consensus pattern (78 bp):
TATAACTGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAAGC
TATGAGCTGGAAT
Found at i:86963343 original size:40 final size:40
Alignment explanation
Indices: 86963065--86963329 Score: 351
Period size: 40 Copynumber: 6.7 Consensus size: 40
86963055 TTGAATGATG
* * * * *
86963065 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCAAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
86963105 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
86963144 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86963184 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86963224 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86963264 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
86963305 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
86963330 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
39 33 0.16
40 163 0.79
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:86963347 original size:120 final size:118
Alignment explanation
Indices: 86963065--86963362 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
86963055 TTGAATGATG
* * * *
86963065 TCCGGGCTAAGTCCCGAAGGCTTTGTGCAA--AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATT-TG-AACGAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCA
86963127 TTTGTGCGAGATACAAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
62 TTTGTGCGAGATACAAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
* ** * *
86963184 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* * *
86963249 GTGCGAGTTACTAAA-TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
65 GTGCGAGATAC-AAATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
* * *
86963305 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
86963363 TACGTGATTT
Statistics
Matches: 151, Mismatches: 20, Indels: 16
0.81 0.11 0.09
Matches are distributed among these distances:
118 3 0.02
119 82 0.54
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACAAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
Found at i:86969883 original size:38 final size:38
Alignment explanation
Indices: 86969712--86969871 Score: 232
Period size: 38 Copynumber: 4.2 Consensus size: 38
86969702 GAATCCAGTC
* * * *
86969712 ACCAGCACAAAACCTGCGGGACTTTAAGCTCGAATAT-AT
1 ACCAGCACTAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
86969751 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
*
86969789 ACCAGCACTAAGCCTGCAGGATTTAACCCGGATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
* *
86969827 ACCAGCACGAAGCCTGCGGGATTTAACCCGCATATAAT
1 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
86969865 ACCAGCA
1 ACCAGCA
86969872 TGAAGCTTGC
Statistics
Matches: 112, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
37 7 0.06
38 86 0.77
39 19 0.17
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.19
Consensus pattern (38 bp):
ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:86977845 original size:38 final size:38
Alignment explanation
Indices: 86977760--86977878 Score: 141
Period size: 38 Copynumber: 3.1 Consensus size: 38
86977750 GAATCCAGTC
* * *
86977760 ACCAGCACAAAACCTGCGGGACTTCAAGCTCG-ATTATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCGCA-TATAAT
** * *
86977800 AGTAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGCATATAAT
86977838 ACCAGCACAAAGCCTGCGGGATTTAACCCGCATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGCATATAAT
86977876 ACC
1 ACC
86977879 GGCATGAAGC
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
38 46 0.68
39 5 0.07
40 17 0.25
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGCATATAAT
Found at i:86984421 original size:38 final size:38
Alignment explanation
Indices: 86984370--86984445 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
86984360 TCAAATCCAT
86984370 AAATACTGCCGGGGCATTAGTGAGCCCAAACGGAATCA
1 AAATACTGCCGGGGCATTAGTGAGCCCAAACGGAATCA
*
86984408 AAATACTGCCGGGGCATTAGTGAGCCCAAACGGCATCA
1 AAATACTGCCGGGGCATTAGTGAGCCCAAACGGAATCA
86984446 CTAAGAATTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.25, G:0.26, T:0.16
Consensus pattern (38 bp):
AAATACTGCCGGGGCATTAGTGAGCCCAAACGGAATCA
Found at i:86988478 original size:54 final size:54
Alignment explanation
Indices: 86988410--86988517 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
86988400 CATTTTTTAA
86988410 GTTAAACCCATTCCGTTATTACATCTGAAATTAACTTATCAAAACGTTTGTTAT
1 GTTAAACCCATTCCGTTATTACATCTGAAATTAACTTATCAAAACGTTTGTTAT
*
86988464 GTTAAACCCATTCCGTTATTACATTTGAAATTAACTTATCAAAACGTTTGTTAT
1 GTTAAACCCATTCCGTTATTACATCTGAAATTAACTTATCAAAACGTTTGTTAT
86988518 CTTTGATTAC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.40
Consensus pattern (54 bp):
GTTAAACCCATTCCGTTATTACATCTGAAATTAACTTATCAAAACGTTTGTTAT
Found at i:86997185 original size:37 final size:37
Alignment explanation
Indices: 86997135--86997213 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
86997125 TTATTACGAA
* *
86997135 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
* *
86997172 GTCTTACCCGGACAAAATTCCCACATGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
86997209 GTCTT
1 GTCTT
86997214 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:86997410 original size:47 final size:47
Alignment explanation
Indices: 86997383--86998480 Score: 1863
Period size: 47 Copynumber: 23.3 Consensus size: 47
86997373 CTCGGCCCTG
* * *
86997383 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
* * *
86997430 TCACATATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
*
86997477 TCACACATATACACTCTCACATTCATCACATCGGCTACATTTGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCT--ATTAGGCCTTA
* * *
86997526 TTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
* * *
86997573 TCACATATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
86997620 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
* * *
86997667 TCACACACATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
86997714 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
* * *
86997761 TCACACACATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
86997808 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
* * *
86997855 TCACACACATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
86997902 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
* * *
86997949 TCACACACATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
86997996 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
* * *
86998043 TCACACACATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
86998090 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
* * *
86998137 TCACACACATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
86998184 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
86998231 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
86998278 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
86998325 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
*
86998372 TCACACATATACACTCTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
* *
86998419 TCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
1 TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
*
86998466 TCACATATATACACT
1 TCACACATATACACT
86998481 GTCTTGGCTG
Statistics
Matches: 994, Mismatches: 55, Indels: 4
0.94 0.05 0.00
Matches are distributed among these distances:
47 951 0.96
49 43 0.04
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
TCACACATATACACTCTCACATTCATCACATCGGCTATTAGGCCTTA
Found at i:87014153 original size:42 final size:42
Alignment explanation
Indices: 87014035--87014158 Score: 117
Period size: 42 Copynumber: 2.9 Consensus size: 42
87014025 TACCACACCA
* * ** * *
87014035 ATGCCATATCTCAGATATGGTCTTATAT-AGGTTCTCATTTTG
1 ATGCCATATGTCAGATATGGTCTTACATGA-AATCTCATATCG
* * * *
87014077 ATGCCA-ATAGCCTAGCTATGATCTTACACGAAATCTCATATCG
1 ATGCCATAT-GTC-AGATATGGTCTTACATGAAATCTCATATCG
87014120 ATGCCATATGTCAGATATGGTCTTACATGAAATCTCATA
1 ATGCCATATGTCAGATATGGTCTTACATGAAATCTCATA
87014159 ATGATGTCAT
Statistics
Matches: 64, Mismatches: 14, Indels: 8
0.74 0.16 0.09
Matches are distributed among these distances:
41 2 0.03
42 31 0.48
43 28 0.44
44 3 0.05
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (42 bp):
ATGCCATATGTCAGATATGGTCTTACATGAAATCTCATATCG
Done.