Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 267 of 279
Found at i:87014178 original size:42 final size:42
Alignment explanation
Indices: 87014067--87014189 Score: 117
Period size: 42 Copynumber: 2.9 Consensus size: 42
87014057 TTATATAGGT
* * * * *
87014067 TCTCATTTTGATGCCAATAGCCTAGCTATGATCTTACACGAAA
1 TCTCATATCGATGCC-ATATCCTAGATATGGTCTTACACGAAA
* *
87014110 TCTCATATCGATGCCATAT-GTCAGATATGGTCTTACATGAAA
1 TCTCATATCGATGCCATATCCT-AGATATGGTCTTACACGAAA
*
87014152 TCTCATAAT-GATGTCATATCCTAGATAT-GTCGTTACAC
1 TCTCAT-ATCGATGCCATATCCTAGATATGGTC-TTACAC
87014190 ATAGTCTCGA
Statistics
Matches: 66, Mismatches: 10, Indels: 9
0.78 0.12 0.11
Matches are distributed among these distances:
41 4 0.06
42 46 0.70
43 16 0.24
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (42 bp):
TCTCATATCGATGCCATATCCTAGATATGGTCTTACACGAAA
Found at i:87037256 original size:27 final size:27
Alignment explanation
Indices: 87037178--87037246 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
87037168 ATAAATACCT
* *
87037178 CATATAGGGGCAAAATAGTCATCTTAC
1 CATATAAGGGCAAAATAGTCATTTTAC
* *
87037205 CACATACGGGCAAAATAGTCATTTTAC
1 CATATAAGGGCAAAATAGTCATTTTAC
87037232 CATATAAGGGCAAAA
1 CATATAAGGGCAAAA
87037247 CAATAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.23
Consensus pattern (27 bp):
CATATAAGGGCAAAATAGTCATTTTAC
Found at i:87039499 original size:27 final size:27
Alignment explanation
Indices: 87039460--87039533 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
87039450 TCTAAGATTT
*
87039460 TTATGTTATATTTTAATTATATAATCAA
1 TTAT-TTAGATTTTAATTATATAATCAA
87039488 TTATTTAGATTTTAATTATATAATCAA
1 TTATTTAGATTTTAATTATATAATCAA
* *
87039515 TTATTTAGATATAAATTAT
1 TTATTTAGATTTTAATTAT
87039534 GTTAAATTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
27 39 0.91
28 4 0.09
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.53
Consensus pattern (27 bp):
TTATTTAGATTTTAATTATATAATCAA
Found at i:87047483 original size:28 final size:28
Alignment explanation
Indices: 87047443--87047502 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
87047433 GAATTATTCG
* * *
87047443 ATATTTTGCACACTAAGTGTCGTTCTCA
1 ATATCTTGCACACTAAGTGCCATTCTCA
87047471 ATATCTTGCACACTAAGTGCCATTCTCA
1 ATATCTTGCACACTAAGTGCCATTCTCA
87047499 ATAT
1 ATAT
87047503 TTCGTACATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (28 bp):
ATATCTTGCACACTAAGTGCCATTCTCA
Found at i:87049477 original size:43 final size:43
Alignment explanation
Indices: 87049424--87049507 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
87049414 TGAGATTACA
* *
87049424 TGTACGACCATGTATGGGACATTGGCATCATTATATGATTTCG
1 TGTAAGACCATGTATGGGACATTAGCATCATTATATGATTTCG
* *
87049467 TGTAAGACCATGTCTGGGACATTAGCATCGTTATATGATTT
1 TGTAAGACCATGTATGGGACATTAGCATCATTATATGATTT
87049508 TGTATAAGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (43 bp):
TGTAAGACCATGTATGGGACATTAGCATCATTATATGATTTCG
Found at i:87052472 original size:15 final size:16
Alignment explanation
Indices: 87052443--87052493 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 16
87052433 TGGTAATGAG
*
87052443 TTATTGGAATGTTA-TA
1 TTATT-GAATTTTATTA
87052459 TTATTGAATTTTATTA
1 TTATTGAATTTTATTA
87052475 TTTATT--ATTTTATTA
1 -TTATTGAATTTTATTA
87052490 TTAT
1 TTAT
87052494 AATTATTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
14 4 0.12
15 16 0.50
16 7 0.22
17 5 0.16
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (16 bp):
TTATTGAATTTTATTA
Found at i:87052475 original size:3 final size:3
Alignment explanation
Indices: 87052469--87052517 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
87052459 TTATTGAATT
* *
87052469 TTA TTA TTTA TTA TT- TTA TTA TTA TAA TTA TTA TT- TT- TTA TCA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
87052512 TTA TTA
1 TTA TTA
87052518 ATTCAATTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 6 0.15
3 30 0.77
4 3 0.08
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:87052502 original size:15 final size:14
Alignment explanation
Indices: 87052465--87052503 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
87052455 TATATTATTG
87052465 AATTTTATTATTTAT
1 AATTTTATTA-TTAT
*
87052480 TATTTTATTATTAT
1 AATTTTATTATTAT
87052494 AATTATTATT
1 AATT-TTATT
87052504 TTTTATCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
AATTTTATTATTAT
Found at i:87056881 original size:31 final size:29
Alignment explanation
Indices: 87056829--87056895 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
87056819 AAAGTAGGAG
*
87056829 GACTAAAATTGACCAATTTAAAAAGTAAAAA
1 GACTAAAATTGACCAAATT--AAAGTAAAAA
** *
87056860 GACTAAAATTGATTAAATTAAAGTATAAA
1 GACTAAAATTGACCAAATTAAAGTAAAAA
87056889 GACTAAA
1 GACTAAA
87056896 TCTTTAACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 16 0.50
31 16 0.50
ACGTcount: A:0.57, C:0.07, G:0.10, T:0.25
Consensus pattern (29 bp):
GACTAAAATTGACCAAATTAAAGTAAAAA
Found at i:87061564 original size:49 final size:50
Alignment explanation
Indices: 87061501--87061625 Score: 148
Period size: 49 Copynumber: 2.5 Consensus size: 50
87061491 TCAAGTGGAT
*
87061501 GCCATGTCCCAGACATGGTCTTACACTAACTAT-AAAAAT-CGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAAATCCG-GGCCAAC
* * * * * *
87061550 GCCATGTCCCAGACA-GGTCTTACACTAGCTCTCACATATCCGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAAATCCGGGCCAAC
*
87061599 GCCATGTCCCAGACATAGTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
87061626 GACACATCTC
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
48 15 0.23
49 38 0.58
50 12 0.18
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTAACTATCAAAAATCCGGGCCAAC
Found at i:87063915 original size:13 final size:13
Alignment explanation
Indices: 87063897--87063921 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87063887 AAATCACTTG
87063897 AAAACTCATATCT
1 AAAACTCATATCT
87063910 AAAACTCATATC
1 AAAACTCATATC
87063922 CACCTTCAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAACTCATATCT
Found at i:87064252 original size:21 final size:21
Alignment explanation
Indices: 87064222--87064266 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
87064212 TATGGTTCAA
*
87064222 ACATGGCTGTGTGGCCATTCC
1 ACATGGCTGTGTGGCCACTCC
* *
87064243 ACATGTCTGTGTGGCTACTCC
1 ACATGGCTGTGTGGCCACTCC
87064264 ACA
1 ACA
87064267 CACCTGTGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.18, C:0.29, G:0.24, T:0.29
Consensus pattern (21 bp):
ACATGGCTGTGTGGCCACTCC
Found at i:87065832 original size:37 final size:36
Alignment explanation
Indices: 87065762--87065832 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 36
87065752 AGTACACAAG
*
87065762 TAATCCAACCGAAACATGCCAAATGCTCATAAGAGC
1 TAATCCAACCGAAACATGCCAAATGCCCATAAGAGC
*
87065798 TAATCCAACCGATAACATGCCAAATGCCCCTAAGA
1 TAATCCAACCGA-AACATGCCAAATGCCCATAAGA
87065833 AACTGATAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 12 0.38
37 20 0.62
ACGTcount: A:0.41, C:0.30, G:0.13, T:0.17
Consensus pattern (36 bp):
TAATCCAACCGAAACATGCCAAATGCCCATAAGAGC
Found at i:87066849 original size:11 final size:11
Alignment explanation
Indices: 87066832--87066861 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
87066822 TTATTCTTCA
87066832 ATTTAATTTTG
1 ATTTAATTTTG
*
87066843 TTTTAATTTTG
1 ATTTAATTTTG
87066854 ATTTAATT
1 ATTTAATT
87066862 ACAAAATTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (11 bp):
ATTTAATTTTG
Found at i:87072583 original size:18 final size:18
Alignment explanation
Indices: 87072545--87072591 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
87072535 TTTGAAATTT
*
87072545 ATAAATTCTTTGTTCAAAA
1 ATAAATT-TTTATTCAAAA
*
87072564 ATAAATTTTTATTGAAAA
1 ATAAATTTTTATTCAAAA
87072582 ATAAATTTTT
1 ATAAATTTTT
87072592 TGTTATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 19 0.73
19 7 0.27
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (18 bp):
ATAAATTTTTATTCAAAA
Found at i:87082614 original size:44 final size:44
Alignment explanation
Indices: 87082546--87082676 Score: 129
Period size: 44 Copynumber: 3.0 Consensus size: 44
87082536 ATTACATATA
* **
87082546 TCGCATCCATAATGAACTCAGACCAACTCAATGAGCTCGGATGC
1 TCGCATCCATAATGAACTCAGACCAAATCAACAAGCTCGGATGC
* * *
87082590 TCGCATCTATAATGAACTCGGACCAAATCAACAAGCTCGGATAC
1 TCGCATCCATAATGAACTCAGACCAAATCAACAAGCTCGGATGC
* * * * * *
87082634 -CTCATACATATCACGAACCCAGACCAACTCAACAAGTTCGGAT
1 TCGCATCCATA--ATGAACTCAGACCAAATCAACAAGCTCGGAT
87082677 TTCCTAAATT
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
43 7 0.10
44 38 0.54
45 26 0.37
ACGTcount: A:0.35, C:0.30, G:0.15, T:0.20
Consensus pattern (44 bp):
TCGCATCCATAATGAACTCAGACCAAATCAACAAGCTCGGATGC
Found at i:87096246 original size:31 final size:31
Alignment explanation
Indices: 87096208--87096286 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
87096198 TTTAACGGTT
87096208 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
87096239 ACTGGGCCAAATCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
87096270 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
87096287 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:87096355 original size:42 final size:42
Alignment explanation
Indices: 87096308--87096401 Score: 161
Period size: 42 Copynumber: 2.2 Consensus size: 42
87096298 TATGGCCCTT
* * *
87096308 AAGCCCATTTCAATATCACATGTAATGCCAATGGATGTATGC
1 AAGCCCATTTCAATATCACATGAAATACCAATGAATGTATGC
87096350 AAGCCCATTTCAATATCACATGAAATACCAATGAATGTATGC
1 AAGCCCATTTCAATATCACATGAAATACCAATGAATGTATGC
87096392 AAGCCCATTT
1 AAGCCCATTT
87096402 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (42 bp):
AAGCCCATTTCAATATCACATGAAATACCAATGAATGTATGC
Found at i:87096618 original size:26 final size:26
Alignment explanation
Indices: 87096534--87096695 Score: 215
Period size: 26 Copynumber: 6.3 Consensus size: 26
87096524 CTGGAGGCCT
87096534 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
87096558 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
87096583 AGCTCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
87096609 AGCCCTTTTCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* ** *
87096635 AGCCATTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
87096661 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
87096687 AGCCCTTTT
1 AGCCCTTTT
87096696 GCACTTCCTC
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
23 5 0.04
24 5 0.04
25 32 0.26
26 79 0.65
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:87097580 original size:27 final size:26
Alignment explanation
Indices: 87097501--87097597 Score: 113
Period size: 27 Copynumber: 3.6 Consensus size: 26
87097491 TATTCGTCAT
* *
87097501 TTTACCATACAGGGGTATTACGGTCAC
1 TTTACCTTACAGGGGT-TTACGGTCTC
*
87097528 TTTACCCTACAGGGGTTTTACGGTCTC
1 TTTACCTTACAGGGG-TTTACGGTCTC
*
87097555 TTTACCTTACAGGGGCTTTACGGTCTT
1 TTTACCTTACAGGGG-TTTACGGTCTC
* *
87097582 TTTACCTAATAGGGGT
1 TTTACCTTACAGGGGT
87097598 ACTTTAGTCA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
26 1 0.02
27 60 0.97
28 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (26 bp):
TTTACCTTACAGGGGTTTACGGTCTC
Found at i:87097671 original size:27 final size:27
Alignment explanation
Indices: 87097618--87098072 Score: 227
Period size: 27 Copynumber: 16.8 Consensus size: 27
87097608 TTTCATCCTA
* * * * *
87097618 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * *
87097645 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *** *
87097672 CAATGGTATTTCCATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTATAAA-T
* *
87097701 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAT
* * *
87097728 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * * *
87097755 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
87097781 CTAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAT
* * *
87097808 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTATAAAT
* * * *
87097836 CAAGGGTATTTTAGCAATTTTACAGA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
*
87097862 CTAGGGTATTTTGGTAATTTTACT-AAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAT
*
87097889 CAAGGGTATTTTGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
87097916 CGAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *** * * *
87097943 CGAGGGTAAAATAGTAATTGTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* ***** **
87097970 TAAGGGTAAAACAGTAATTCAATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* **** *
87097997 CGAGGGTAAAACGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
**** *
87098024 CAAGGGTAAAACGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
87098051 CGAGGGTACTTTGGTAATTTTA
1 CAAGGGTATTTTGGTAATTTTA
87098073 CAATTTGAGG
Statistics
Matches: 346, Mismatches: 72, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
26 24 0.07
27 294 0.85
28 15 0.04
29 13 0.04
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:87097922 original size:80 final size:81
Alignment explanation
Indices: 87097731--87097936 Score: 281
Period size: 80 Copynumber: 2.6 Consensus size: 81
87097721 TGTAAATTAG
* ** *
87097731 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAACTAGTGGTATTTTGG
*
87097796 TAATTTTACAAACTAG
66 TAATTTTACAAACTAA
* * * *
87097812 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACTAG-GGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAACTAGTGGTATTTTGG
*
87097876 TAATTTTACTAA-TCAA
66 TAATTTTACAAACT-AA
**
87097892 GGGTATTTTGGTAATTTTGTAAATCGAGGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTT
87097937 GTAAATCGAG
Statistics
Matches: 109, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
79 1 0.01
80 62 0.57
81 46 0.42
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAAACTAGTGGTATTTTGG
TAATTTTACAAACTAA
Found at i:87097949 original size:54 final size:54
Alignment explanation
Indices: 87097618--87098103 Score: 269
Period size: 54 Copynumber: 9.0 Consensus size: 54
87097608 TTTCATCCTA
* * * * * *
87097618 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTATAAAT
* *** * * * *
87097672 CAATGGTATTTCCATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-TCAAGGGTATTTCAGTAATTTTATAAAT
* * ** * * *
87097728 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTATAAAT
* * ** * *
87097781 CTAGTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAATC-AAGGGTATTTCAGTAATTTTATAAAT
* * * * **
87097836 CAAGGGTATTTTAGCAATTTTACAGA-CTAGGGTATTTTGGTAATTTTACT-AAT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTA-TAAAT
** * * *
87097889 CAAGGGTATTTTGGTAATTTTGTAAATCGAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTATAAAT
* *** * * ** * *** **
87097943 CGAGGGTAAAATAGTAATTGTGTAAATTAAGGGTAAAACAGTAATTCAATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTATAAAT
* **** ** *** * *
87097997 CGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTATAAAT
* * * ** *
87098051 CGAGGGTACTTTGGTAATTTTACAATTTGAGGGTATTTCAGTAATTTTGTAAA
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTATAAA
87098104 CTAAAGTATT
Statistics
Matches: 338, Mismatches: 86, Indels: 16
0.77 0.20 0.04
Matches are distributed among these distances:
53 44 0.13
54 242 0.72
55 17 0.05
56 35 0.10
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTTATAAAT
Found at i:87128216 original size:15 final size:16
Alignment explanation
Indices: 87128179--87128216 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
87128169 ATTATTTTCT
87128179 TTTTCATTTAATTAAA
1 TTTTCATTTAATTAAA
* *
87128195 ATTTCATTTAA-TAAC
1 TTTTCATTTAATTAAA
87128210 TTTTCAT
1 TTTTCAT
87128217 CTTTCTAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTTCATTTAATTAAA
Found at i:87138203 original size:41 final size:41
Alignment explanation
Indices: 87138142--87138360 Score: 334
Period size: 41 Copynumber: 5.4 Consensus size: 41
87138132 GTTTTAGTAA
* * *
87138142 AAAACGCCGCTAAAA-ACAGAGCATTAGCAGTGCTTTCTGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCAGCGCTTTCGGT
* *
87138182 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCTGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCAGCGCTTTCGGT
*
87138223 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCAGCGCTTTCGGT
* *
87138264 AAAACGCCGCTAAAAGCCAGAGCATTAGC-GACGCGTTAGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCAG-CGCTTTCGGT
*
87138305 AAAACGCAGCTAAAAGCCAGAGCATTAGCAGCGCTTTCGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCAGCGCTTTCGGT
87138346 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
87138361 ATCTCATAAC
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
40 16 0.10
41 149 0.90
42 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.24, T:0.17
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGCCAGAGCATTAGCAGCGCTTTCGGT
Found at i:87139392 original size:15 final size:15
Alignment explanation
Indices: 87139372--87139403 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
87139362 TTTAATTTAG
*
87139372 AAGATAAATGTATAT
1 AAGATAAATATATAT
87139387 AAGATAAATATATAT
1 AAGATAAATATATAT
87139402 AA
1 AA
87139404 AATATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (15 bp):
AAGATAAATATATAT
Found at i:87139442 original size:24 final size:24
Alignment explanation
Indices: 87139375--87139442 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
87139365 AATTTAGAAG
* *
87139375 ATAAATGTATATAAGATAAATATAT
1 ATAAATATATATATGA-AAATATAT
* *
87139400 ATAAA-ATATTATTTTAAAATATAT
1 ATAAATATA-TATATGAAAATATAT
87139424 ATAAATATATATATGAAAA
1 ATAAATATATATATGAAAA
87139443 GTGGTTTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (24 bp):
ATAAATATATATATGAAAATATAT
Found at i:87143829 original size:290 final size:290
Alignment explanation
Indices: 87143309--87143910 Score: 1204
Period size: 290 Copynumber: 2.1 Consensus size: 290
87143299 CCAACCTTGT
87143309 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGCCTTATATCGAGCT
87143374 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
87143439 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
87143504 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAAATACTATT
196 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAAATACTATT
87143569 TTTTTATATTAATAATGTTTGATTTTAATA
261 TTTTTATATTAATAATGTTTGATTTTAATA
87143599 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGCCTTATATCGAGCT
1 TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGCCTTATATCGAGCT
87143664 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
66 GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
87143729 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
131 AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
87143794 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAAATACTATT
196 TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAAATACTATT
87143859 TTTTTATATTAATAATGTTTGATTTTAATA
261 TTTTTATATTAATAATGTTTGATTTTAATA
87143889 TTTAAATATTTTAAAGATTCAA
1 TTTAAATATTTTAAAGATTCAA
87143911 CTTAAGAAAA
Statistics
Matches: 312, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
290 312 1.00
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (290 bp):
TTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTAACGGGTTGCCTTATATCGAGCT
GCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAA
AAAGACTTGAAAAAAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATTTATT
TCCAATTTACTTATAAAAATTAAACTACGATTCTTTTTTGATATTATTATATTCAAAATACTATT
TTTTTATATTAATAATGTTTGATTTTAATA
Found at i:87144049 original size:15 final size:15
Alignment explanation
Indices: 87144031--87144060 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
87144021 ATAATTTTTA
87144031 TAAATATTATTTAAT
1 TAAATATTATTTAAT
87144046 TAAATATTATTTAAT
1 TAAATATTATTTAAT
87144061 CCCGCTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TAAATATTATTTAAT
Found at i:87144195 original size:27 final size:27
Alignment explanation
Indices: 87144165--87144382 Score: 222
Period size: 27 Copynumber: 7.9 Consensus size: 27
87144155 TATTTGATAT
* * *
87144165 CATAATTTATATAACTTACAAAACGTA
1 CATAACTTATATAACTTACATAACTTA
*
87144192 CATAACTTATATAACTTATATAACTTA
1 CATAACTTATATAACTTACATAACTTA
* *
87144219 CATAACTTATATAACATATATAACTTA
1 CATAACTTATATAACTTACATAACTTA
*
87144246 CATAACTTATATAACATACATAACTTA
1 CATAACTTATATAACTTACATAACTTA
* * *
87144273 TATAACTTATATAACTTAGATAA-ATA
1 CATAACTTATATAACTTACATAACTTA
* *
87144299 TATAACTTACATAACTTACATAATACTTA
1 CATAACTTATATAACTTACAT-A-ACTTA
* * *
87144328 AATATATTTTATATCATAATTTACATAACTTA
1 CATA-A--CT-TAT-ATAACTTACATAACTTA
*
87144360 CATAACTTATATAACTTAGATAA
1 CATAACTTATATAACTTACATAA
87144383 ATATATAATT
Statistics
Matches: 162, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
26 21 0.13
27 107 0.66
28 4 0.02
29 6 0.04
30 1 0.01
31 1 0.01
32 9 0.06
33 3 0.02
34 10 0.06
ACGTcount: A:0.47, C:0.14, G:0.01, T:0.38
Consensus pattern (27 bp):
CATAACTTATATAACTTACATAACTTA
Found at i:87144198 original size:18 final size:18
Alignment explanation
Indices: 87144165--87144435 Score: 207
Period size: 18 Copynumber: 15.3 Consensus size: 18
87144155 TATTTGATAT
*
87144165 CATAATTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
87144183 CAAAACGTACATAACTTA
1 CATAACTTATATAACTTA
*
87144201 TATAACTTATATAACTTA
1 CATAACTTATATAACTTA
*
87144219 CATAACTTATATAACATA
1 CATAACTTATATAACTTA
* *
87144237 TATAACTTACATAACTTA
1 CATAACTTATATAACTTA
* * *
87144255 TATAACATACATAACTTA
1 CATAACTTATATAACTTA
*
87144273 TATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* *
87144291 GATAA-ATATATAACTTA
1 CATAACTTATATAACTTA
*
87144308 CATAACTTACATAATACTTA
1 CATAACTTATAT-A-ACTTA
* *
87144328 AATATA-TTTTAT-A--T-
1 CATA-ACTTATATAACTTA
* *
87144342 CATAATTTACATAACTTA
1 CATAACTTATATAACTTA
87144360 CATAACTTATATAACTTA
1 CATAACTTATATAACTTA
* * *
87144378 GATAA-ATATATAATTTA
1 CATAACTTATATAACTTA
* * *
87144395 CATAA-ATATATATCATA
1 CATAACTTATATAACTTA
* *
87144412 TCATAAATTACATAACTTA
1 -CATAACTTATATAACTTA
87144431 CATAA
1 CATAA
87144436 TACTTAAATA
Statistics
Matches: 202, Mismatches: 40, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
13 1 0.00
14 7 0.03
15 2 0.01
17 40 0.20
18 130 0.64
19 9 0.04
20 12 0.06
21 1 0.00
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (18 bp):
CATAACTTATATAACTTA
Found at i:87144205 original size:9 final size:9
Alignment explanation
Indices: 87144166--87144435 Score: 186
Period size: 9 Copynumber: 29.4 Consensus size: 9
87144156 ATTTGATATC
*
87144166 ATAATTTAT
1 ATAACTTAT
*
87144175 ATAACTTAC
1 ATAACTTAT
* * *
87144184 AAAACGTAC
1 ATAACTTAT
87144193 ATAACTTAT
1 ATAACTTAT
87144202 ATAACTTAT
1 ATAACTTAT
*
87144211 ATAACTTAC
1 ATAACTTAT
87144220 ATAACTTAT
1 ATAACTTAT
*
87144229 ATAACATAT
1 ATAACTTAT
*
87144238 ATAACTTAC
1 ATAACTTAT
87144247 ATAACTTAT
1 ATAACTTAT
* *
87144256 ATAACATAC
1 ATAACTTAT
87144265 ATAACTTAT
1 ATAACTTAT
87144274 ATAACTTAT
1 ATAACTTAT
*
87144283 ATAACTTAG
1 ATAACTTAT
*
87144292 ATAA-ATAT
1 ATAACTTAT
*
87144300 ATAACTTAC
1 ATAACTTAT
*
87144309 ATAACTTAC
1 ATAACTTAT
87144318 ATAATACTTAAAT
1 AT-A-ACTT--AT
**
87144331 ATATTTTATAT
1 ATA-ACT-TAT
* *
87144342 CATAATTTAC
1 -ATAACTTAT
*
87144352 ATAACTTAC
1 ATAACTTAT
87144361 ATAACTTAT
1 ATAACTTAT
*
87144370 ATAACTTAG
1 ATAACTTAT
*
87144379 ATAA-ATAT
1 ATAACTTAT
* *
87144387 ATAATTTAC
1 ATAACTTAT
*
87144396 ATAA-ATAT
1 ATAACTTAT
* *
87144404 ATATCATAT
1 ATAACTTAT
* *
87144413 CATAAATTAC
1 -ATAACTTAT
*
87144423 ATAACTTAC
1 ATAACTTAT
87144432 ATAA
1 ATAA
87144436 TACTTAAATA
Statistics
Matches: 209, Mismatches: 42, Indels: 20
0.77 0.15 0.07
Matches are distributed among these distances:
8 17 0.08
9 166 0.79
10 8 0.04
11 8 0.04
12 6 0.03
13 4 0.02
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.38
Consensus pattern (9 bp):
ATAACTTAT
Found at i:87144367 original size:114 final size:114
Alignment explanation
Indices: 87144238--87144459 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
87144228 TATAACATAT
* * *
87144238 ATAACTTACATAACTTATATAACATACATAACTTATATAACTTATATAACTTAGATA-AATAT-A
1 ATAACTTACATAACTTATATAACATACATAA-ATATATAACTTACATAA-ATAGATATAATATCA
* * *
87144301 TAACTTACATAACTTACATAATACTTAAATATATTTTATATCATAATTTAC
64 TAAATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
* * * * *
87144352 ATAACTTACATAACTTATATAACTTAGATAAATATATAATTTACATAAATATATATCATATCATA
1 ATAACTTACATAACTTATATAACATACATAAATATATAACTTACATAAATAGATATAATATCATA
87144417 AATTACATAACTTACATAATACTTAAATATATATCATATCATA
66 AATTACATAACTTACATAATACTTAAATATATATCATATCATA
87144460 CATAACTAGT
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 5 0.05
113 18 0.19
114 72 0.76
ACGTcount: A:0.48, C:0.13, G:0.01, T:0.39
Consensus pattern (114 bp):
ATAACTTACATAACTTATATAACATACATAAATATATAACTTACATAAATAGATATAATATCATA
AATTACATAACTTACATAATACTTAAATATATATCATATCATAATTTAC
Found at i:87147852 original size:79 final size:81
Alignment explanation
Indices: 87147716--87147900 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
87147706 TTGAATGATG
*
87147716 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
87147780 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
87147795 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
87147857 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
87147875 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87147901 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:87147914 original size:40 final size:40
Alignment explanation
Indices: 87147717--87147900 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
87147707 TGAATGATGT
* * * *
87147717 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
87147757 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
87147797 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
87147835 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
87147876 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
87147901 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:87147922 original size:79 final size:79
Alignment explanation
Indices: 87147717--87147933 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
87147707 TGAATGATGT
** * * * **
87147717 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
87147780 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
87147797 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
87147862 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
87147876 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
87147934 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:87153523 original size:31 final size:31
Alignment explanation
Indices: 87153477--87153543 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
87153467 TGGTTATATT
* *
87153477 TTTTATGTTAAATTTGCTGTTTTTGGCTGCA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
* * * *
87153508 TTTTATATTATATTTGTTGTATTTGGTTGGA
1 TTTTATATTAAATTTGCTGTATTTGGCTGCA
87153539 TTTTA
1 TTTTA
87153544 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (31 bp):
TTTTATATTAAATTTGCTGTATTTGGCTGCA
Found at i:87153644 original size:43 final size:43
Alignment explanation
Indices: 87153618--87153861 Score: 391
Period size: 43 Copynumber: 5.7 Consensus size: 43
87153608 GTAAAAAAAG
*
87153618 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGC-TTTACGCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTAC-CACAAA
*
87153661 CGCCGCTAAAAGCCTTGACCTTTAGCGGCACTTTTACCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
*
87153704 CGCCGCTAAAAAGCCTTGACGTTTAGCGGCGCTTTTACCACAAA
1 CGCCGCT-AAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
** * *
87153748 CGCCGCTAAAAGCCTTGATGTTTAGTGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
*
87153791 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
87153834 CGCCGCTAAAAGCCTTGACCTTTAGCGG
1 CGCCGCTAAAAGCCTTGACCTTTAGCGG
87153862 TGTCTTTTTC
Statistics
Matches: 189, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
43 143 0.76
44 46 0.24
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (43 bp):
CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
Found at i:87153746 original size:87 final size:86
Alignment explanation
Indices: 87153618--87153861 Score: 400
Period size: 87 Copynumber: 2.8 Consensus size: 86
87153608 GTAAAAAAAG
87153618 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGC-TTTACGCACAAACGCCGCTAAAAGCCTTGACCT
1 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTTAC-CACAAACGCCGCTAAAAGCCTTGACCT
87153682 TTAGCGGCACTTTTACCACAAA
65 TTAGCGGCACTTTTACCACAAA
**
87153704 CGCCGCTAAAAAGCCTTGACGTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAAGCCTTGATGT
1 CGCCGCT-AAAAGCCTTGACGTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAAGCCTTGACCT
* * *
87153769 TTAGTGGCGCTTTTCCCACAAA
65 TTAGCGGCACTTTTACCACAAA
* *
87153791 CGCCGCTAAAAGCCTTGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAAGCCTTGACCTT
87153856 TAGCGG
66 TAGCGG
87153862 TGTCTTTTTC
Statistics
Matches: 146, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
86 66 0.45
87 75 0.51
88 5 0.03
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (86 bp):
CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTTACCACAAACGCCGCTAAAAGCCTTGACCTT
TAGCGGCACTTTTACCACAAA
Found at i:87153869 original size:130 final size:130
Alignment explanation
Indices: 87153618--87153861 Score: 418
Period size: 130 Copynumber: 1.9 Consensus size: 130
87153608 GTAAAAAAAG
*
87153618 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTACGCACAAACGCCGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAGCCTTGACCTT
*
87153683 TAGCGGCACTTTTACCACAAACGCCGCTAAAAAGCCTTGACGTTTAGCGGCGCTTTTACCACAAA
66 TAGCGGCACTTTTACCACAAACGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
* * *
87153748 CGCCGCTAAAAGCCTTGATGTTTAGTGGCGCTTTTCCCACAAACGCCGCTAAAAGCCTTGACCTT
1 CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAGCCTTGACCTT
* *
87153813 TAGCGGCGCTTTTCCCACAAACGCCGCT-AAAAGCCTTGACCTTTAGCGG
66 TAGCGGCACTTTTACCACAAACGCCGCTAAAAAGCCTTGACCTTTAGCGG
87153862 TGTCTTTTTC
Statistics
Matches: 107, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
129 20 0.19
130 87 0.81
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (130 bp):
CGCCGCTAAAAGCCTTGACGTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAAGCCTTGACCTT
TAGCGGCACTTTTACCACAAACGCCGCTAAAAAGCCTTGACCTTTAGCGGCGCTTTTACCACAAA
Found at i:87154196 original size:64 final size:64
Alignment explanation
Indices: 87154112--87154280 Score: 196
Period size: 64 Copynumber: 2.6 Consensus size: 64
87154102 TGTTCTTCTT
* * * ** **
87154112 ATACTGAAACGCCATTCTCATGCACCGAACCTCTGCAAAGCCATAATTTACTTAATGATATTTG
1 ATACTCAAACCCCATTCTCATCCACCGAACCTCTGCAAAGCCATAATTTACTTAACAATATTCA
* *
87154176 ATATTCAAACCCCATTCTCATCCACCAAACCT-TCGCAAAGCCATAATTTACTTAACAATATTCA
1 ATACTCAAACCCCATTCTCATCCACCGAACCTCT-GCAAAGCCATAATTTACTTAACAATATTCA
* * ** *
87154240 ATACTGAAACCCCATTCTAATCCAATGAACCTCTACAAAGC
1 ATACTCAAACCCCATTCTCATCCACCGAACCTCTGCAAAGC
87154281 AAAAGTTTCC
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
63 1 0.01
64 85 0.98
65 1 0.01
ACGTcount: A:0.36, C:0.29, G:0.08, T:0.27
Consensus pattern (64 bp):
ATACTCAAACCCCATTCTCATCCACCGAACCTCTGCAAAGCCATAATTTACTTAACAATATTCA
Found at i:87160083 original size:15 final size:15
Alignment explanation
Indices: 87160065--87160094 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
87160055 AATTGTGAAA
87160065 TTGTAAAATTATGTG
1 TTGTAAAATTATGTG
87160080 TTGTAAAATTATGTG
1 TTGTAAAATTATGTG
87160095 GTTAAAAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (15 bp):
TTGTAAAATTATGTG
Found at i:87160704 original size:23 final size:23
Alignment explanation
Indices: 87160617--87160740 Score: 76
Period size: 23 Copynumber: 5.3 Consensus size: 23
87160607 AGACTCACCA
*
87160617 CAGCTCATATGAGCTTACCGATATAT
1 CAGCTCGTATGAGCTTACC-AT-T-T
* * *
87160643 TAGCTCGTAAGAGCTTACTATTTT
1 CAGCTCGTATGAGCTTACCA-TTT
*
87160667 CAGCTCAT-TGAAGCTTACCATTT
1 CAGCTCGTATG-AGCTTACCATTT
*
87160690 CAGATCGTATGAGCTTA-C-TGTT
1 CAGCTCGTATGAGCTTACCAT-TT
* * *
87160712 CAGCTC-AATAGAGCTTATCGTTT
1 CAGCTCGTAT-GAGCTTACCATTT
87160735 CAGCTC
1 CAGCTC
87160741 AATAAAGCTT
Statistics
Matches: 79, Mismatches: 12, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
21 3 0.04
22 15 0.19
23 25 0.32
24 18 0.23
25 2 0.03
26 16 0.20
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.35
Consensus pattern (23 bp):
CAGCTCGTATGAGCTTACCATTT
Found at i:87160725 original size:22 final size:22
Alignment explanation
Indices: 87160700--87160755 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 22
87160690 CAGATCGTAT
87160700 GAGCTTACTGTTCAGCTCAATA
1 GAGCTTACTGTTCAGCTCAATA
87160722 GAGCTTA-TCGTTTCAGCTCAATA
1 GAGCTTACT-G-TTCAGCTCAATA
*
87160745 AAGCTTACTGT
1 GAGCTTACTGT
87160756 ACATCAGCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 1 0.03
22 9 0.30
23 19 0.63
24 1 0.03
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATA
Found at i:87160727 original size:45 final size:46
Alignment explanation
Indices: 87160647--87160737 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 46
87160637 ATATATTAGC
* *
87160647 TCGTAAGAGCTTACTATTTTCAGCTCATTGAAGCTTACCATTTCAGA
1 TCGTAAGAGCTTAC-ATGTTCAGCTCATAGAAGCTTACCATTTCAGA
* * *
87160694 TCGTATGAGCTTAC-TGTTCAGCTCAATAG-AGCTTATCGTTTCAG
1 TCGTAAGAGCTTACATGTTCAGCTC-ATAGAAGCTTACCATTTCAG
87160738 CTCAATAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
45 22 0.58
46 3 0.08
47 13 0.34
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (46 bp):
TCGTAAGAGCTTACATGTTCAGCTCATAGAAGCTTACCATTTCAGA
Found at i:87160884 original size:37 final size:37
Alignment explanation
Indices: 87160834--87160908 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
87160824 ACTGACATTG
*
87160834 TTCACTCGATTATCCTTTGAAGTTCTAATAGGTTCAA
1 TTCACTCGATTATCCTTTGAAGTTCTAATAGGTCCAA
87160871 TTCACTCGATTATCCTTTGAAGTTCTAATAGGTCCAA
1 TTCACTCGATTATCCTTTGAAGTTCTAATAGGTCCAA
87160908 T
1 T
87160909 GAGCTTAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (37 bp):
TTCACTCGATTATCCTTTGAAGTTCTAATAGGTCCAA
Found at i:87163079 original size:26 final size:26
Alignment explanation
Indices: 87163041--87163090 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
87163031 AAGTGAACTC
87163041 AAATTAACTTAAAAA-TGATAAAATAA
1 AAATTAACTTAAAAACT-ATAAAATAA
87163067 AAATTAA-TCTAAAAACTATAAAAT
1 AAATTAACT-TAAAAACTATAAAAT
87163091 GTAATGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 1 0.05
26 20 0.91
27 1 0.05
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.28
Consensus pattern (26 bp):
AAATTAACTTAAAAACTATAAAATAA
Found at i:87168140 original size:27 final size:27
Alignment explanation
Indices: 87168092--87168170 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
87168082 AGACCTCGGA
87168092 TTATAAAA-TACCGAAATACCCTCTGT-
1 TTATAAAATTACCGAAATACCCT-TGTG
*
87168118 TTATAAAATTATCGAAATACCCTTGTG
1 TTATAAAATTACCGAAATACCCTTGTG
* *
87168145 GTGTAAAATTACCGAAATACCCTTGT
1 TTATAAAATTACCGAAATACCCTTGT
87168171 AGGGTAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
26 11 0.23
27 36 0.77
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (27 bp):
TTATAAAATTACCGAAATACCCTTGTG
Found at i:87168177 original size:27 final size:26
Alignment explanation
Indices: 87168095--87168180 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 26
87168085 CCTCGGATTA
***
87168095 TAAAA-TACCGAAATACCCTCTGTTTA
1 TAAAATTACCGAAATACCCT-TGTGGG
*
87168121 TAAAATTATCGAAATACCCTTGTGGTG
1 TAAAATTACCGAAATACCCTTGTGG-G
87168148 TAAAATTACCGAAATACCCTTGTAGGG
1 TAAAATTACCGAAATACCCTTGT-GGG
87168175 TAAAAT
1 TAAAAT
87168181 GACTGTTTTG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.15
27 42 0.81
28 2 0.04
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.30
Consensus pattern (26 bp):
TAAAATTACCGAAATACCCTTGTGGG
Found at i:87168707 original size:33 final size:33
Alignment explanation
Indices: 87168622--87168710 Score: 98
Period size: 28 Copynumber: 2.8 Consensus size: 33
87168612 TAATTGCATT
* *
87168622 ACACTGTACTGATACTGTATTGGGCTTAGGCCC
1 ACACTGTACTGATACTGTATAGGGCTAAGGCCC
* *
87168655 ACAGTGT--T-AT--TGTATAGGGCTAAGGCCT
1 ACACTGTACTGATACTGTATAGGGCTAAGGCCC
*
87168683 AGACTGTACTGATACTGTATAGGGCTAA
1 ACACTGTACTGATACTGTATAGGGCTAA
87168711 AACCCAGACT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
28 20 0.44
30 3 0.07
31 3 0.07
33 19 0.42
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (33 bp):
ACACTGTACTGATACTGTATAGGGCTAAGGCCC
Found at i:87171274 original size:27 final size:27
Alignment explanation
Indices: 87171243--87171319 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
87171233 AAGACCCCAA
87171243 ATTATAAAATTACTGAAATACCCTCG-
1 ATTATAAAATTACTGAAATACCCTCGT
* *
87171269 ATTTATAAAATTATTGAAATACCCTTGT
1 A-TTATAAAATTACTGAAATACCCTCGT
* * *
87171297 AGTGTAAAATTACCGAAATACCC
1 ATTATAAAATTACTGAAATACCC
87171320 GTGTAGGGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
26 1 0.02
27 41 0.95
28 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (27 bp):
ATTATAAAATTACTGAAATACCCTCGT
Found at i:87171324 original size:27 final size:27
Alignment explanation
Indices: 87171274--87171333 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
87171264 CCTCGATTTA
** * *
87171274 TAAAATTATTGAAATACCCTTGTAGTG
1 TAAAATTACCGAAATACCCGTGTAGGG
87171301 TAAAATTACCGAAATACCCGTGTAGGG
1 TAAAATTACCGAAATACCCGTGTAGGG
87171328 TAAAAT
1 TAAAAT
87171334 GACTGTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCGTGTAGGG
Found at i:87171818 original size:33 final size:34
Alignment explanation
Indices: 87171776--87171879 Score: 142
Period size: 33 Copynumber: 3.1 Consensus size: 34
87171766 ATTGCATTAC
*
87171776 ACTGTACTGATACTGTATTA-GGCTTAGGCCCAA
1 ACTGTACTGATACTGTATTAGGGCTAAGGCCCAA
*
87171809 ACTGTACTGATACTGTA-TAGGGCTAAGGCCCAG
1 ACTGTACTGATACTGTATTAGGGCTAAGGCCCAA
* * *
87171842 ACTCTACTGATACTGTA-TAGGGCTAAAGCCCAG
1 ACTGTACTGATACTGTATTAGGGCTAAGGCCCAA
87171875 ACTGT
1 ACTGT
87171880 TTTGCATATT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
32 2 0.03
33 63 0.97
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (34 bp):
ACTGTACTGATACTGTATTAGGGCTAAGGCCCAA
Found at i:87172647 original size:30 final size:30
Alignment explanation
Indices: 87172613--87172678 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
87172603 CACGGGTAGA
*
87172613 GACACGGCTGTGTGTCTCAACCGTATGAAG
1 GACACGGCCGTGTGTCTCAACCGTATGAAG
87172643 GACACGGCCGTGTGTCTCAACCGTATGAAG
1 GACACGGCCGTGTGTCTCAACCGTATGAAG
87172673 GACACG
1 GACACG
87172679 ACCTTAGCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.24, C:0.26, G:0.30, T:0.20
Consensus pattern (30 bp):
GACACGGCCGTGTGTCTCAACCGTATGAAG
Found at i:87174492 original size:24 final size:22
Alignment explanation
Indices: 87174456--87174502 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
87174446 TTAATTTAAT
* *
87174456 AATTATAAATTTAATTATAAAAA
1 AATTAAAAATTTAA-GATAAAAA
87174479 AATTAAAATATTTAAGATAAAAA
1 AATTAAAA-ATTTAAGATAAAAA
87174502 A
1 A
87174503 TTAGAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (22 bp):
AATTAAAAATTTAAGATAAAAA
Found at i:87179149 original size:32 final size:31
Alignment explanation
Indices: 87179091--87179167 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 31
87179081 CCACGTGCCT
* *
87179091 GTGTGGCCCACACACCCAGATTGGCCTTACTC
1 GTGTGGCCCACACACCCAGATCGGCC-TACCC
87179123 GTGTGGCCCACACGA-CCA-ACTCGGCCTACCC
1 GTGTGGCCCACAC-ACCCAGA-TCGGCCTACCC
*
87179154 ATGTGGCCCACACA
1 GTGTGGCCCACACA
87179168 GCCACGCTCG
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
30 1 0.03
31 17 0.43
32 21 0.52
33 1 0.03
ACGTcount: A:0.21, C:0.40, G:0.22, T:0.17
Consensus pattern (31 bp):
GTGTGGCCCACACACCCAGATCGGCCTACCC
Found at i:87192249 original size:25 final size:25
Alignment explanation
Indices: 87192217--87192264 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
87192207 TTATAATATG
*
87192217 AAAATGACCATTTTACCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
87192242 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
87192265 GTTTTTGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:87192330 original size:20 final size:20
Alignment explanation
Indices: 87192307--87192364 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
87192297 TAAACATAGT
87192307 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
87192327 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
87192347 ACGTATG-TATGCACATGA
1 ATGTATGATATGCACATGA
87192365 TGTATTCATA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 11 0.31
20 25 0.69
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:87192449 original size:23 final size:23
Alignment explanation
Indices: 87192419--87192488 Score: 95
Period size: 23 Copynumber: 3.0 Consensus size: 23
87192409 AAGTGCAAAT
*
87192419 GGGCTTATGCCCCAATTATTAAA
1 GGGCTTATGCCCCAGTTATTAAA
87192442 GGGCTTATGCCCCAGTTATTAAAA
1 GGGCTTATGCCCCAGTTATT-AAA
* * *
87192466 GGTCTTTTGCCCCAGTTACTAAA
1 GGGCTTATGCCCCAGTTATTAAA
87192489 AGAGGCTAGG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
23 22 0.52
24 20 0.48
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (23 bp):
GGGCTTATGCCCCAGTTATTAAA
Found at i:87192476 original size:24 final size:24
Alignment explanation
Indices: 87192419--87192509 Score: 105
Period size: 24 Copynumber: 3.8 Consensus size: 24
87192409 AAGTGCAAAT
*
87192419 GGGCTTATGCCCCAATTATT-AAA
1 GGGCTTATGCCCCAGTTATTAAAA
87192442 GGGCTTATGCCCCAGTTATTAAAA
1 GGGCTTATGCCCCAGTTATTAAAA
* * *
87192466 GGTCTTTTGCCCCAGTTACTAAAA
1 GGGCTTATGCCCCAGTTATTAAAA
*
87192490 GAGGC-TAGGCCTCCAGTTAT
1 G-GGCTTATGCC-CCAGTTAT
87192510 ATGATAAAGC
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
23 19 0.33
24 29 0.51
25 9 0.16
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (24 bp):
GGGCTTATGCCCCAGTTATTAAAA
Found at i:87198833 original size:20 final size:20
Alignment explanation
Indices: 87198810--87198865 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
87198800 TATACATGGT
87198810 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
87198830 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
87198850 ATGTATGATATGCACA
1 ATGTATGATATGCACA
87198866 AGATGTATTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:87198953 original size:23 final size:23
Alignment explanation
Indices: 87198923--87198991 Score: 120
Period size: 23 Copynumber: 3.0 Consensus size: 23
87198913 AAGTGCAAAT
87198923 GGGCTTATGCCCCAGTTATTAAA
1 GGGCTTATGCCCCAGTTATTAAA
87198946 GGGCTTATGCCCCAGTTATTAAA
1 GGGCTTATGCCCCAGTTATTAAA
* *
87198969 GGGCTTTTGCCCCAGTTACTAAA
1 GGGCTTATGCCCCAGTTATTAAA
87198992 AGAGGCTAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (23 bp):
GGGCTTATGCCCCAGTTATTAAA
Found at i:87203904 original size:35 final size:35
Alignment explanation
Indices: 87203792--87203929 Score: 120
Period size: 35 Copynumber: 3.9 Consensus size: 35
87203782 CATAAGTAAG
* *
87203792 TACATGT-AAGCTTATATTGAACTTGTATATTCGGC
1 TACATGTGAA-CTTATATTGAAATTGTATATTCGGA
* ** *
87203827 TGCATGTGAGGTTATATTG-AATTTTAGTATTC-GA
1 TACATGTGAACTTATATTGAAATTGTA-TATTCGGA
87203861 TTACATGTGAACTTATATTGAAATTGTATATTCGGA
1 -TACATGTGAACTTATATTGAAATTGTATATTCGGA
* * * * * *
87203897 TATATGTGAAGTTATCTTAAAAATGCATATTCG
1 TACATGTGAACTTATATTGAAATTGTATATTCG
87203930 ACCATATGTG
Statistics
Matches: 82, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
34 6 0.07
35 67 0.82
36 9 0.11
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.41
Consensus pattern (35 bp):
TACATGTGAACTTATATTGAAATTGTATATTCGGA
Found at i:87203928 original size:70 final size:70
Alignment explanation
Indices: 87203792--87203930 Score: 156
Period size: 70 Copynumber: 2.0 Consensus size: 70
87203782 CATAAGTAAG
* * * * * * **
87203792 TACATGTAAGCTTATATTGAACTTGTATATTCGGCTGCATGTGAGGTTATATTGAATTTTAGTAT
1 TACATGTAAGCTTATATTGAAATTGTATATTCGGATACATGTGAAGTTATATTAAAATGCAGTAT
87203857 TCGAT
66 TCGAT
* *
87203862 TACATGTGAA-CTTATATTGAAATTGTATATTCGGATATATGTGAAGTTATCTTAAAAATGCA-T
1 TACATGT-AAGCTTATATTGAAATTGTATATTCGGATACATGTGAAGTTATATT-AAAATGCAGT
87203925 ATTCGA
64 ATTCGA
87203931 CCATATGTGA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
70 51 0.89
71 6 0.11
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (70 bp):
TACATGTAAGCTTATATTGAAATTGTATATTCGGATACATGTGAAGTTATATTAAAATGCAGTAT
TCGAT
Found at i:87210456 original size:255 final size:252
Alignment explanation
Indices: 87209986--87210495 Score: 813
Period size: 255 Copynumber: 2.0 Consensus size: 252
87209976 ATCTGAGTCT
87209986 ATAAGTGAAGAGGAATTGAATTTTAGGAGGGAGACATCATGAGAACTATGGTAATGGATACCAAC
1 ATAAGTGAAGAGGAATTGAATTTTAGGAGGGAGACATCATGAGAACTATGGTAATGGATACCAAC
* * *
87210051 AATTAATTTTTCTAATCGGAAAAGCAAATCATGATATTGGATATGGAAACCATAGTGGTGGTGAA
66 AATTAATTTTTCTAATCGGAAAAGCAAATCATGATAATGGATATAGAAACCACAGTGGTGGTGAA
* * *
87210116 ATTAATGGGAAGGAATTTGGCATATTCTACTCACCATAATAGGATCTTTAGTCTTTGGAAACCAA
131 ATTAATGGGAAGGAATTTGGCATATTCTACTCACCATAATAGGAACTTTAGTATCTGGAAACCAA
* * * *
87210181 TACATTTGTTTCAGCTCATGGATGTTGAAAACAGCTACTTTCTAGTGAAATTTTAGA
196 CACATTTGTTTCAACTCATGGATGTTGAAAACAACTACTTTCTAGTGAAATTTCAGA
*
87210238 ATAAGTGAAGAGGAGATTGAATTTTAGGAGGGAGTCATCATGAGAACTATGGTTAATGGATACCA
1 ATAAGTGAAGAGGA-ATTGAATTTTAGGAGGGAGACATCATGAGAACTATGG-TAATGGATACCA
* * *
87210303 ACAATTAATTTTTCTGATTGGATAAAGCAAATCATGATAATGGATATAGAAACCACGGTGGTGGT
64 ACAATTAATTTTTCTAATCGGA-AAAGCAAATCATGATAATGGATATAGAAACCACAGTGGTGGT
* *
87210368 GAAATTAGTGGGAATGAATTTGGCATATTCTACTCACCATAATAGGAACTTTAGTATCTGGAAAC
128 GAAATTAATGGGAAGGAATTTGGCATATTCTACTCACCATAATAGGAACTTTAGTATCTGGAAAC
** * *
87210433 TTACACATTTGTTTCAACTCATGGATGTTGAAAACAACTTCTTTCTAGTGAAGTTTCAGA
193 CAACACATTTGTTTCAACTCATGGATGTTGAAAACAACTACTTTCTAGTGAAATTTCAGA
87210493 ATA
1 ATA
87210496 GGGAGAACTA
Statistics
Matches: 235, Mismatches: 20, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
252 14 0.06
253 36 0.15
254 32 0.14
255 153 0.65
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.31
Consensus pattern (252 bp):
ATAAGTGAAGAGGAATTGAATTTTAGGAGGGAGACATCATGAGAACTATGGTAATGGATACCAAC
AATTAATTTTTCTAATCGGAAAAGCAAATCATGATAATGGATATAGAAACCACAGTGGTGGTGAA
ATTAATGGGAAGGAATTTGGCATATTCTACTCACCATAATAGGAACTTTAGTATCTGGAAACCAA
CACATTTGTTTCAACTCATGGATGTTGAAAACAACTACTTTCTAGTGAAATTTCAGA
Found at i:87218541 original size:99 final size:99
Alignment explanation
Indices: 87218367--87218555 Score: 342
Period size: 99 Copynumber: 1.9 Consensus size: 99
87218357 CATGCCAAAC
* *
87218367 TTATCAACTAATCATCAAACACAAGTCTACCTACACATGCCATTATAACCTCGGCCAAAATATCA
1 TTATCAACTAATCATCAAACACAAGTCCACCTACACATGCCATTATAACCTCGGCCAAAACATCA
87218432 AAAACCATTGATATAATCATTAGATAGTGTGAAT
66 AAAACCATTGATATAATCATTAGATAGTGTGAAT
*
87218466 TTATCAACTAATCATCAAACACAAGTCCACCTATACATGCCATTATAACCTCGGCCAAAACATCA
1 TTATCAACTAATCATCAAACACAAGTCCACCTACACATGCCATTATAACCTCGGCCAAAACATCA
*
87218531 AAAACTATTGATATAATCATTAGAT
66 AAAACCATTGATATAATCATTAGAT
87218556 CTTCAATGAA
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 86 1.00
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (99 bp):
TTATCAACTAATCATCAAACACAAGTCCACCTACACATGCCATTATAACCTCGGCCAAAACATCA
AAAACCATTGATATAATCATTAGATAGTGTGAAT
Found at i:87220478 original size:20 final size:20
Alignment explanation
Indices: 87220453--87220513 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
87220443 TTATTTATTT
87220453 TTTTAAAACTTTTTACTTTA
1 TTTTAAAACTTTTTACTTTA
87220473 TTTTAATAA----TTA-TTT-
1 TTTTAA-AACTTTTTACTTTA
87220488 TTTTAAAACTTTTTACTTTA
1 TTTTAAAACTTTTTACTTTA
87220508 TTTTAA
1 TTTTAA
87220514 TAATAAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
14 2 0.06
15 6 0.18
16 3 0.09
17 3 0.09
18 3 0.09
19 3 0.09
20 12 0.35
21 2 0.06
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTAAAACTTTTTACTTTA
Found at i:87220493 original size:35 final size:35
Alignment explanation
Indices: 87220447--87220517 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
87220437 TTTTGTTTAT
87220447 TTATTTTTTTAAAACTTTTTACTTTATTTTAATAA
1 TTATTTTTTTAAAACTTTTTACTTTATTTTAATAA
87220482 TTATTTTTTTAAAACTTTTTACTTTATTTTAATAA
1 TTATTTTTTTAAAACTTTTTACTTTATTTTAATAA
87220517 T
1 T
87220518 AAAAAAATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (35 bp):
TTATTTTTTTAAAACTTTTTACTTTATTTTAATAA
Found at i:87222568 original size:18 final size:19
Alignment explanation
Indices: 87222529--87222568 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
87222519 ACAGATTGAT
*
87222529 TAAA-AAAATTATATATAA
1 TAAATAAAATTACATATAA
87222547 -AAATAAAATTACAT-TAA
1 TAAATAAAATTACATATAA
87222564 TAAAT
1 TAAAT
87222569 TCAACTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAATAAAATTACATATAA
Found at i:87229026 original size:16 final size:17
Alignment explanation
Indices: 87229005--87229044 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
87228995 ATGGAATAAG
87229005 GCTGTAATTG-AATAGA
1 GCTGTAATTGAAATAGA
*
87229021 GTTGTAA-TGAAATAGA
1 GCTGTAATTGAAATAGA
87229037 GCTGTAAT
1 GCTGTAAT
87229045 CAGTAGTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.33
Consensus pattern (17 bp):
GCTGTAATTGAAATAGA
Found at i:87229328 original size:38 final size:37
Alignment explanation
Indices: 87229257--87229328 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 37
87229247 AAAATAATAA
*
87229257 ATAATTTAACTATATTTTAACATAATTATTATTAAAT
1 ATAATTTAACTACATTTTAACATAATTATTATTAAAT
*
87229294 ATAATTTAA-TAACATTCTTAATATAATTATTATTA
1 ATAATTTAACT-ACATT-TTAACATAATTATTATTA
87229329 TATGAATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 1 0.03
37 13 0.42
38 17 0.55
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (37 bp):
ATAATTTAACTACATTTTAACATAATTATTATTAAAT
Found at i:87229352 original size:35 final size:37
Alignment explanation
Indices: 87229278--87229353 Score: 86
Period size: 38 Copynumber: 2.1 Consensus size: 37
87229268 ATATTTTAAC
* **
87229278 ATAATTATTATTAAATATAATTTAATAACATTCTTAAT
1 ATAATTATTATT-AATATAATTTAATAACAATCAAAAT
87229316 ATAATTATTATT-ATATGAATTTAA-AA-AATCAAAAT
1 ATAATTATTATTAATAT-AATTTAATAACAATCAAAAT
87229351 ATA
1 ATA
87229354 TACTACTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
35 9 0.26
36 6 0.18
37 7 0.21
38 12 0.35
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (37 bp):
ATAATTATTATTAATATAATTTAATAACAATCAAAAT
Found at i:87229761 original size:43 final size:43
Alignment explanation
Indices: 87229713--87229798 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
87229703 TACAAATACA
* *
87229713 TAAGGCAACTAATTTGATGTCTTTTCCAACTTGATACCTAACC
1 TAAGGCAACCAATTTGATGTCTTTTCCAACTTGATACCCAACC
*
87229756 TAAGGCAACCAATTTGATGTCTTTTCTAACTTGATACCCAACC
1 TAAGGCAACCAATTTGATGTCTTTTCCAACTTGATACCCAACC
87229799 AATTCCTGAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (43 bp):
TAAGGCAACCAATTTGATGTCTTTTCCAACTTGATACCCAACC
Found at i:87244369 original size:16 final size:16
Alignment explanation
Indices: 87244348--87244380 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
87244338 AAACTGAGGA
87244348 TGGAATCCCAAATTAG
1 TGGAATCCCAAATTAG
87244364 TGGAATCCCAAATTAG
1 TGGAATCCCAAATTAG
87244380 T
1 T
87244381 AATTGTAGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.27
Consensus pattern (16 bp):
TGGAATCCCAAATTAG
Found at i:87245424 original size:19 final size:19
Alignment explanation
Indices: 87245400--87245437 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
87245390 AAGTGTTAAC
87245400 ATGCATAAGGTCCATTTAG
1 ATGCATAAGGTCCATTTAG
87245419 ATGCATAAGGTCCATTTAG
1 ATGCATAAGGTCCATTTAG
87245438 CAAAATTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (19 bp):
ATGCATAAGGTCCATTTAG
Found at i:87249189 original size:29 final size:29
Alignment explanation
Indices: 87249118--87249189 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 29
87249108 TCTGTACGAT
* * *
87249118 GATCTCTATTAAAATGGAAGTCTTTGTGGC
1 GATCTCTAAT-AAATGGAAGCCTTGGTGGC
*
87249148 GACCT-TAATTAAATGGAAGCCTTGGTGGC
1 GATCTCTAA-TAAATGGAAGCCTTGGTGGC
87249177 GATCTCTAATAAA
1 GATCTCTAATAAA
87249190 AAGAATGCCT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
29 27 0.77
30 8 0.23
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (29 bp):
GATCTCTAATAAATGGAAGCCTTGGTGGC
Found at i:87268532 original size:17 final size:19
Alignment explanation
Indices: 87268506--87268543 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
87268496 GCGTGTGACA
87268506 TTTTAAAAG-T-TGAAAAT
1 TTTTAAAAGTTCTGAAAAT
*
87268523 TTTTATAAGTTCTGAAAAT
1 TTTTAAAAGTTCTGAAAAT
87268542 TT
1 TT
87268544 CACATGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 8 0.44
18 1 0.06
19 9 0.50
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.47
Consensus pattern (19 bp):
TTTTAAAAGTTCTGAAAAT
Found at i:87268784 original size:20 final size:20
Alignment explanation
Indices: 87268759--87268799 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
87268749 AATTTACTCT
87268759 AAAACAGGGAAATAAAACTA
1 AAAACAGGGAAATAAAACTA
*
87268779 AAAACAGGGAGATAAAACTA
1 AAAACAGGGAAATAAAACTA
87268799 A
1 A
87268800 GTAAGCAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.63, C:0.10, G:0.17, T:0.10
Consensus pattern (20 bp):
AAAACAGGGAAATAAAACTA
Found at i:87271476 original size:32 final size:34
Alignment explanation
Indices: 87271440--87271504 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 34
87271430 TAACAGTGGT
*
87271440 ACTGGACCAGAG-CCCTT-TTCAGATTACAGTAA
1 ACTGGACCAGAGCCCCTTATTCAGATAACAGTAA
* **
87271472 ACTGGGCCTTAGCCCCTTATTCAGATAACAGTA
1 ACTGGACCAGAGCCCCTTATTCAGATAACAGTA
87271505 TGGCCCATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 9 0.33
33 5 0.19
34 13 0.48
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (34 bp):
ACTGGACCAGAGCCCCTTATTCAGATAACAGTAA
Found at i:87273071 original size:26 final size:26
Alignment explanation
Indices: 87273041--87273252 Score: 424
Period size: 26 Copynumber: 8.2 Consensus size: 26
87273031 TGAAATGCCC
87273041 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87273067 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87273093 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87273119 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87273145 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87273171 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87273197 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87273223 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87273249 ATCA
1 ATCA
87273253 ATTTGTATCA
Statistics
Matches: 186, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 186 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:87275501 original size:25 final size:27
Alignment explanation
Indices: 87275464--87275514 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
87275454 TCAAACATGC
87275464 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
87275490 ATTTCGGT-AATTTATCTCCTAGGGG
1 ATTTAGGTCAATTTAACTCCTAGGGG
87275515 GTAAAACTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:87284106 original size:26 final size:26
Alignment explanation
Indices: 87284076--87284287 Score: 424
Period size: 26 Copynumber: 8.2 Consensus size: 26
87284066 TGAAATGCCC
87284076 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87284102 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87284128 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87284154 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87284180 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87284206 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87284232 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87284258 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
87284284 ATCA
1 ATCA
87284288 ATTTGTATCA
Statistics
Matches: 186, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 186 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:87285399 original size:12 final size:12
Alignment explanation
Indices: 87285376--87285448 Score: 64
Period size: 12 Copynumber: 6.2 Consensus size: 12
87285366 CGCAACCTAA
87285376 TTTTATTT-TAT
1 TTTTATTTATAT
*
87285387 TTATATCTT-TAT
1 TTTTAT-TTATAT
*
87285399 TTATATTTATAT
1 TTTTATTTATAT
*
87285411 ATTTATTTAT-T
1 TTTTATTTATAT
*
87285422 TTTTATTTTTTAT
1 TTTTA-TTTATAT
87285435 TTTTATTT-TAT
1 TTTTATTTATAT
87285446 TTT
1 TTT
87285449 ATTGCATGTT
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
11 18 0.34
12 29 0.55
13 6 0.11
ACGTcount: A:0.22, C:0.01, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTATTTATAT
Found at i:87285401 original size:4 final size:4
Alignment explanation
Indices: 87285377--87285436 Score: 56
Period size: 4 Copynumber: 15.8 Consensus size: 4
87285367 GCAACCTAAT
* * *
87285377 TTTA TTTTA TTTA TATC TTTA TTTA --TA TTTA TATA TTTA TTTA TTT-
1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
87285423 TTTA TTT- TTTA TTT
1 TTTA TTTA TTTA TTT
87285437 TTATTTTATT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
2 2 0.04
3 6 0.13
4 33 0.73
5 4 0.09
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:87285407 original size:6 final size:5
Alignment explanation
Indices: 87285375--87285451 Score: 70
Period size: 5 Copynumber: 14.6 Consensus size: 5
87285365 ACGCAACCTA
87285375 ATTTT ATTTT ATTTAT ATCTTT ATTTAT ATTTAT ATATTT A-TTT ATTTT
1 ATTTT ATTTT ATTT-T AT-TTT ATTT-T ATTT-T AT-TTT ATTTT ATTTT
87285424 -TTATT -TTTT ATTTTT ATTTT ATTTT ATT
1 ATT-TT ATTTT A-TTTT ATTTT ATTTT ATT
87285452 GCATGTTATA
Statistics
Matches: 64, Mismatches: 0, Indels: 16
0.80 0.00 0.20
Matches are distributed among these distances:
4 8 0.12
5 30 0.47
6 22 0.34
7 4 0.06
ACGTcount: A:0.23, C:0.01, G:0.00, T:0.75
Consensus pattern (5 bp):
ATTTT
Found at i:87285407 original size:18 final size:17
Alignment explanation
Indices: 87285375--87285451 Score: 86
Period size: 18 Copynumber: 4.5 Consensus size: 17
87285365 ACGCAACCTA
87285375 ATTTTATTT-TATTTAT
1 ATTTTATTTATATTTAT
87285391 ATCTTTATTTATATTTAT
1 AT-TTTATTTATATTTAT
*
87285409 ATATTTATTTATTTTTTAT
1 AT-TTTATTTA-TATTTAT
* *
87285428 TTTTTATTTTTATTT-T
1 ATTTTATTTATATTTAT
87285444 ATTTTATT
1 ATTTTATT
87285452 GCATGTTATA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
16 10 0.19
17 11 0.21
18 24 0.46
19 7 0.13
ACGTcount: A:0.23, C:0.01, G:0.00, T:0.75
Consensus pattern (17 bp):
ATTTTATTTATATTTAT
Found at i:87285428 original size:7 final size:7
Alignment explanation
Indices: 87285410--87285443 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
87285400 TATATTTATA
87285410 TATTTATT
1 TATTT-TT
87285418 TATTTTT
1 TATTTTT
87285425 TATTTTT
1 TATTTTT
87285432 TA-TTTT
1 TATTTTT
87285438 TATTTT
1 TATTTT
87285444 ATTTTATTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.24
7 14 0.56
8 5 0.20
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (7 bp):
TATTTTT
Found at i:87290314 original size:42 final size:41
Alignment explanation
Indices: 87290195--87290314 Score: 104
Period size: 42 Copynumber: 2.9 Consensus size: 41
87290185 CACTATAACA
* * *
87290195 ATGCCATATCCCAGATATGG--TTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTATA-CGAATCTCATATCG
* *
87290235 ATGCCAATAGT-CCAGCTATAGTCTTACT-CGAAGTCTCATATCG
1 ATGCC-ATA-TCCCAGATATGGTCTTA-TACGAA-TCTCATATCG
*
87290278 ATGTCATATCCCAGATATGGTCTTATACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTATACG-AATCTCA
87290315 AATAGCCCTA
Statistics
Matches: 63, Mismatches: 8, Indels: 16
0.72 0.09 0.18
Matches are distributed among these distances:
40 5 0.08
41 13 0.21
42 26 0.41
43 19 0.30
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTATACGAATCTCATATCG
Found at i:87293024 original size:43 final size:43
Alignment explanation
Indices: 87292948--87293558 Score: 317
Period size: 43 Copynumber: 13.0 Consensus size: 43
87292938 ATATCGTACA
* * * * *
87292948 ATGCCAAGGTCCCAAACATAGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
** ** ** * *
87292991 AAACC-ACTGTCTTAGACAAGGTCTTACACGTAATCGCTTATCG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
87293034 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCA-ATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
87293076 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
87293119 ATGCCAACGTCTCAAACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
87293162 ATGCCAATGTCCCAAACGTGCTCTTACCTCAAACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTA---C--AC---G---TA-AT-----CACATATCG
* * *
87293222 ATGCCAATGTCCCAAACGTGCTCTTACCTCAAACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTA---C--AC---G---TA-AT-----CACATATCG
* * *
87293282 ATGCCAATGTCCCAAACGTGCTCTTACCTCAAACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTA---C--AC---G---TA-AT-----CACATATCG
* * * *
87293342 ATGCCAATGTCCCAAACGTGCTCTTACACATAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * * * *
87293385 ATGTCAATGTCCTAGGCATGGTCTTACACGTATTCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
87293428 ATGCCAACATTCCAGACATGGTCTTACACGAAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
87293471 ATGTCAACGTCCCAGATGTGGTATTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
87293514 ATCCCAACATCTCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
87293557 AT
1 AT
87293559 AATCCTATGT
Statistics
Matches: 488, Mismatches: 60, Indels: 40
0.83 0.10 0.07
Matches are distributed among these distances:
42 40 0.08
43 277 0.57
44 2 0.00
46 1 0.00
48 3 0.01
49 2 0.00
51 1 0.00
54 2 0.00
55 4 0.01
57 1 0.00
60 155 0.32
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:87293118 original size:85 final size:86
Alignment explanation
Indices: 87292948--87293188 Score: 286
Period size: 85 Copynumber: 2.8 Consensus size: 86
87292938 ATATCGTACA
* * * ** ** * ** * **
87292948 ATGCCAAGGTCCCAAACATAGTCTTACATGTAATCACATATCGAAACCACTGTCTTAGACAAGGT
1 ATGCCAACGTCCCAAACGTGGTCTTACACATAATCACATATCGATGCCAATGTCCCAAACGTGGT
* *
87293013 CTTACACGTAATCGCTTATCG
66 CTTACACGTAATCACATATCG
* *
87293034 ATGCCAACGTCCCAGACGTGGTCTTACACATAATCA-ATATCGATGCCAATGTCCCAGACGTGGT
1 ATGCCAACGTCCCAAACGTGGTCTTACACATAATCACATATCGATGCCAATGTCCCAAACGTGGT
87293098 CTTACACGTAATCACATATCG
66 CTTACACGTAATCACATATCG
* ** *
87293119 ATGCCAACGTCTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCT
1 ATGCCAACGTCCCAAACGTGGTCTTACACATAATCACATATCGATGCCAATGTCCCAAACGTGGT
87293184 CTTAC
66 CTTAC
87293189 CTCAAACGTG
Statistics
Matches: 133, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
85 72 0.54
86 61 0.46
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (86 bp):
ATGCCAACGTCCCAAACGTGGTCTTACACATAATCACATATCGATGCCAATGTCCCAAACGTGGT
CTTACACGTAATCACATATCG
Found at i:87293181 original size:128 final size:128
Alignment explanation
Indices: 87292948--87293188 Score: 313
Period size: 128 Copynumber: 1.9 Consensus size: 128
87292938 ATATCGTACA
* * *
87292948 ATGCCAAGGTCCCAAACATAGTCTTACATGTAATCACATATCGAAACCACTGTCTTAGACAAGGT
1 ATGCCAAGGTCCCAAACATAGTCTTACACGTAATCACATATCGAAACCACTGTCTCAAACAAGGT
* * * *
87293013 CTTACACGTAATCGCTTATCGATGCCAACGTCCCAGACGTGGTCTTACACATAATCAATATCG
66 CTTACACGTAATCACATATCGATGCCAACGTCCCAAACGTGCTCTTACACATAATCAATATCG
* * * * ** **
87293076 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGCCAAC-GTCTCAAACGTGG
1 ATGCCAAGGTCCCAAACATAGTCTTACACGTAATCACATATCGAAACC-ACTGTCTCAAACAAGG
* *
87293140 TCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
65 TCTTACACGTAATCACATATCGATGCCAACGTCCCAAACGTGCTCTTAC
87293189 CTCAAACGTG
Statistics
Matches: 95, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
128 93 0.98
129 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.26
Consensus pattern (128 bp):
ATGCCAAGGTCCCAAACATAGTCTTACACGTAATCACATATCGAAACCACTGTCTCAAACAAGGT
CTTACACGTAATCACATATCGATGCCAACGTCCCAAACGTGCTCTTACACATAATCAATATCG
Found at i:87293222 original size:60 final size:60
Alignment explanation
Indices: 87293129--87293368 Score: 480
Period size: 60 Copynumber: 4.0 Consensus size: 60
87293119 ATGCCAACGT
87293129 CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
1 CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
87293189 CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
1 CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
87293249 CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
1 CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
87293309 CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
1 CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
87293369 ACATAATCAC
Statistics
Matches: 180, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 180 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (60 bp):
CTCAAACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
Found at i:87293298 original size:103 final size:103
Alignment explanation
Indices: 87293049--87293308 Score: 232
Period size: 103 Copynumber: 2.5 Consensus size: 103
87293039 AACGTCCCAG
** *
87293049 ACGTGGTCTTACACATAATCA-ATATCGATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAC
1 ACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGGTCTTACACGTAATCAC
* * **
87293113 ATATCGATGCCAACGTCTCAAACGTGGTCTTACATGTA
66 ATATCGATGCCAACGTCCCAAACGTGCTCTTACATCAA
** * * * * *
87293151 A--T-CACATATCGATGCCAATGTCCCA-AACG-TGCTC--T-TACCTCAAACGTGGTCTTACAT
1 ACGTGGTCTTA-C-ATG-TAA--TCACATATCGATGC-CAATGT-CC-CAAACGTGGTCTTACAC
* *
87293208 GTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTACCTCAA
58 GTAATCACATATCGATGCCAACGTCCCAAACGTGCTCTTACATCAA
*
87293254 ACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGCTCTTAC
1 ACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGGTCTTAC
87293309 CTCAAACGTG
Statistics
Matches: 118, Mismatches: 23, Indels: 33
0.68 0.13 0.19
Matches are distributed among these distances:
99 3 0.03
100 2 0.02
101 6 0.05
102 10 0.08
103 78 0.66
104 12 0.10
105 4 0.03
106 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (103 bp):
ACGTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAACGTGGTCTTACACGTAATCAC
ATATCGATGCCAACGTCCCAAACGTGCTCTTACATCAA
Found at i:87294088 original size:30 final size:30
Alignment explanation
Indices: 87294043--87294101 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
87294033 CTTAACAAGA
87294043 AAATACCTCTAAAATAATAACAAAATTAAC
1 AAATACCTCTAAAATAATAACAAAATTAAC
* *
87294073 AAATGCCTTTAAAATAATAACAAAATTAA
1 AAATACCTCTAAAATAATAACAAAATTAA
87294102 TAATAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.59, C:0.14, G:0.02, T:0.25
Consensus pattern (30 bp):
AAATACCTCTAAAATAATAACAAAATTAAC
Found at i:87299162 original size:20 final size:21
Alignment explanation
Indices: 87299137--87299175 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
87299127 TAATTTCTTC
*
87299137 TTTTATTCCTATT-TTTATTT
1 TTTTATTCATATTGTTTATTT
87299157 TTTTATTCATATTGTTTAT
1 TTTTATTCATATTGTTTAT
87299176 GATATTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.18, C:0.08, G:0.03, T:0.72
Consensus pattern (21 bp):
TTTTATTCATATTGTTTATTT
Found at i:87305822 original size:13 final size:13
Alignment explanation
Indices: 87305790--87305824 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
87305780 ATAGAATTTC
*
87305790 TTTCTTCTCCCGA
1 TTTCTTTTCCCGA
*
87305803 TTTCTTTTCCCTA
1 TTTCTTTTCCCGA
87305816 TTTCTTTTC
1 TTTCTTTTC
87305825 TTTCCTCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.31, G:0.03, T:0.60
Consensus pattern (13 bp):
TTTCTTTTCCCGA
Found at i:87307106 original size:91 final size:89
Alignment explanation
Indices: 87307005--87307270 Score: 223
Period size: 91 Copynumber: 2.9 Consensus size: 89
87306995 GCTCGACCAG
* * * *
87307005 TGGTTTATCCACAATGACTTTTAGTCGACAGTCATA-TCCTCGACTAGTGGTTCATCCAC-ATGT
1 TGGTTCATCCACAAT-A-TTTTAGTCGACAGT-ATACTACTCGACCAATGGTTCATCCACAATGT
* ** * *
87307068 ATTAGTAGCTTTTATATGCACTAATGGA
63 -TCAACAACTTTTATATGCACAAATGGA
* *
87307096 TGGTTCATCCATCAATATTTTATTCGACAGTTTACCTACTCGACCAATGGTTCATCCACAATGTT
1 TGGTTCATCCA-CAATATTTTAGTCGACAGTATA-CTACTCGACCAATGGTTCATCCACAATGTT
87307161 CAACAACTTTTATATGCACAAATGGA
64 CAACAACTTTTATATGCACAAATGGA
* * * * ** * *
87307187 TGGTTCAACCACCAATATTTCAGTC-TCTAGTTTACCTACTTAACCAATGGTTCATCTACAAAGT
1 TGGTTCATCCA-CAATATTTTAGTCGAC-AGTATA-CTACTCGACCAATGGTTCATCCACAATGT
* * *
87307251 ATTAGCAACTTTTATCTGCA
63 -TCAACAACTTTTATATGCA
87307271 TAGACAGTTG
Statistics
Matches: 146, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
89 2 0.01
90 14 0.10
91 106 0.73
92 24 0.16
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (89 bp):
TGGTTCATCCACAATATTTTAGTCGACAGTATACTACTCGACCAATGGTTCATCCACAATGTTCA
ACAACTTTTATATGCACAAATGGA
Found at i:87313201 original size:20 final size:21
Alignment explanation
Indices: 87313155--87313207 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
87313145 TACTAATTAC
87313155 AAATATTTAATAATTATATTT
1 AAATATTTAATAATTATATTT
87313176 AAATATTTAA-AA-TATAGTTT
1 AAATATTTAATAATTATA-TTT
*
87313196 ATATATTCTAAT
1 AAATATT-TAAT
87313208 TAAATTTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 4 0.14
20 11 0.39
21 13 0.46
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
AAATATTTAATAATTATATTT
Found at i:87313490 original size:13 final size:14
Alignment explanation
Indices: 87313470--87313516 Score: 64
Period size: 13 Copynumber: 3.6 Consensus size: 14
87313460 AAGTACTTCT
87313470 CAAAAGCACTTTTC
1 CAAAAGCACTTTTC
*
87313484 C-ACAGCAC-TTTC
1 CAAAAGCACTTTTC
87313496 CAAAAGCACTTTT-
1 CAAAAGCACTTTTC
87313509 CAAAAGCA
1 CAAAAGCA
87313517 TTGCCAAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 5 0.17
13 20 0.69
14 4 0.14
ACGTcount: A:0.38, C:0.30, G:0.09, T:0.23
Consensus pattern (14 bp):
CAAAAGCACTTTTC
Found at i:87313516 original size:26 final size:25
Alignment explanation
Indices: 87313454--87313512 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 25
87313444 TAAACTAAAA
*
87313454 TTTTCAAAGTAC-TTCTCAAAAGCAC
1 TTTTCAAAGCACTTTC-CAAAAGCAC
*
87313479 TTTTCCACAGCACTTTCCAAAAGCAC
1 TTTT-CAAAGCACTTTCCAAAAGCAC
87313505 TTTTCAAA
1 TTTTCAAA
87313513 AGCATTGCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 7 0.24
26 19 0.66
27 3 0.10
ACGTcount: A:0.34, C:0.27, G:0.07, T:0.32
Consensus pattern (25 bp):
TTTTCAAAGCACTTTCCAAAAGCAC
Found at i:87313904 original size:21 final size:21
Alignment explanation
Indices: 87313775--87313907 Score: 88
Period size: 21 Copynumber: 6.3 Consensus size: 21
87313765 CTGAAGGCTG
* * * *
87313775 AACAGAAGCACATAAGTGCTA
1 AACAGAAACTCATAAGAGTTA
* * *
87313796 AACAGAAACCCATAAGGGTTG
1 AACAGAAACTCATAAGAGTTA
* * *
87313817 AACGGAAGCTCATAAGAGCTA
1 AACAGAAACTCATAAGAGTTA
* * *
87313838 AACAGAAACCCATAAGGGTTG
1 AACAGAAACTCATAAGAGTTA
* * * *
87313859 AACAGAAGCTTA-ATAGAGCTG
1 AACAGAAACTCATA-AGAGTTA
*
87313880 AACAGAAACTCATATGAGTTA
1 AACAGAAACTCATAAGAGTTA
87313901 AACAGAA
1 AACAGAA
87313908 GCTTGTGAGA
Statistics
Matches: 83, Mismatches: 27, Indels: 4
0.73 0.24 0.04
Matches are distributed among these distances:
20 1 0.01
21 81 0.98
22 1 0.01
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.16
Consensus pattern (21 bp):
AACAGAAACTCATAAGAGTTA
Found at i:87313910 original size:42 final size:43
Alignment explanation
Indices: 87313773--87313929 Score: 171
Period size: 42 Copynumber: 3.7 Consensus size: 43
87313763 GCCTGAAGGC
*
87313773 TGAACAGAAGC--ACATAAGTGCTAAACAGAAACCCATAAGGGT
1 TGAACAGAAGCTTA-ATAAGAGCTAAACAGAAACCCATAAGGGT
* *
87313815 TGAACGGAAGC-TCATAAGAGCTAAACAGAAACCCATAAGGGT
1 TGAACAGAAGCTTAATAAGAGCTAAACAGAAACCCATAAGGGT
* * * *
87313857 TGAACAGAAGCTTAAT-AGAGCTGAACAGAAACTCATATGAGT
1 TGAACAGAAGCTTAATAAGAGCTAAACAGAAACCCATAAGGGT
* * * *
87313899 TAAACAGAAGCTT-GTGAGAGCTAAACGGAAA
1 TGAACAGAAGCTTAATAAGAGCTAAACAGAAA
87313930 GTAAACACGA
Statistics
Matches: 99, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 95 0.96
43 3 0.03
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.17
Consensus pattern (43 bp):
TGAACAGAAGCTTAATAAGAGCTAAACAGAAACCCATAAGGGT
Found at i:87320563 original size:28 final size:28
Alignment explanation
Indices: 87320508--87320570 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
87320498 TCCATTTTCC
* *
87320508 TTCACTCTCATCACAACAGTTGTTCTCT
1 TTCACTCTCATCACAACAGTCGTCCTCT
* **
87320536 TTCACTCTCTTCACAGTAGTCGTCCTCT
1 TTCACTCTCATCACAACAGTCGTCCTCT
87320564 TTC-CTCT
1 TTCACTCT
87320571 TTGTCCATCA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 4 0.13
28 26 0.87
ACGTcount: A:0.16, C:0.35, G:0.08, T:0.41
Consensus pattern (28 bp):
TTCACTCTCATCACAACAGTCGTCCTCT
Found at i:87322917 original size:14 final size:15
Alignment explanation
Indices: 87322900--87322928 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
87322890 TGAATGTTGT
87322900 ATTTATG-TAATGTG
1 ATTTATGTTAATGTG
87322914 ATTTATGTTAATGTG
1 ATTTATGTTAATGTG
87322929 TCATACTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
ATTTATGTTAATGTG
Found at i:87327057 original size:13 final size:13
Alignment explanation
Indices: 87327041--87327073 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
87327031 TTTAATTAAA
*
87327041 TTAGTTAATTAGT
1 TTAGATAATTAGT
87327054 TTAGATAATTAGT
1 TTAGATAATTAGT
87327067 TTA-ATAA
1 TTAGATAA
87327074 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:87330108 original size:50 final size:50
Alignment explanation
Indices: 87329989--87330165 Score: 183
Period size: 48 Copynumber: 3.7 Consensus size: 50
87329979 TAGGGTAAGA
*
87329989 TGCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCATACATCAAAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATACATCAAAG
* * **
87330039 T--CGATACCATGTCCCAGACATGGTCTGACACTGGCTC-T-CATCTGTCAG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATACATC--AAAG
* * *
87330087 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACATA-A--AAA-
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATACATCAAAG
* *
87330133 -GCTGATACCATGTCCCAGACATGGTCTTACACT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACT
87330166 AGCTTTCAGG
Statistics
Matches: 106, Mismatches: 15, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
45 30 0.28
46 4 0.04
47 2 0.02
48 36 0.34
50 32 0.30
51 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (50 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATACATCAAAG
Found at i:87330195 original size:95 final size:97
Alignment explanation
Indices: 87329989--87330224 Score: 284
Period size: 95 Copynumber: 2.4 Consensus size: 97
87329979 TAGGGTAAGA
* * * *
87329989 TGCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCATACATCAAAGTCGATACCATGTCCC
1 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACATACA-CAAAGTCGATACCATGTCCC
* * *
87330054 AGACATGGTCTGACACTGGCTCTCATCTGTCAG
65 AGACATGGTCTGACACTAGCTCTCAGCTCTCAG
87330087 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACATA-A-AAAG-CTGATACCATGTCCC
1 TGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACATACACAAAGTC-GATACCATGTCCC
* * *
87330149 AGACATGGTCTTACACTAGCTTTCAGGTCTCGAG
65 AGACATGGTCTGACACTAGCTCTCAGCTCTC-AG
* *
87330183 -GCTGATGTCATGTCCTAGACAT-GTCTTACACTAGCACACATA
1 TGCCGATGCCATGTCCTAGACATGGTCTTACACT-G-ACACATA
87330225 TCACCCAAAT
Statistics
Matches: 122, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
94 11 0.09
95 63 0.52
96 9 0.07
97 1 0.01
98 38 0.31
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (97 bp):
TGCCGATGCCATGTCCTAGACATGGTCTTACACTGACACATACACAAAGTCGATACCATGTCCCA
GACATGGTCTGACACTAGCTCTCAGCTCTCAG
Found at i:87337282 original size:50 final size:49
Alignment explanation
Indices: 87337170--87337447 Score: 219
Period size: 50 Copynumber: 5.7 Consensus size: 49
87337160 AGGGTAAGAT
* * * * *
87337170 GCCGACGCCATATCCCAGACATGGTCTTACACTGA--CTCATACATCGAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATAT-TAG
* * * * *
87337218 GTCAATGCCGTGTCCTAGACATGGTCTTACATTGACTCTCATATATTAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATTAG
* * * * * **
87337267 GACCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCCTCTGTCGG
1 G-CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATTAG
* * * ** *
87337317 TGTCGATGCCATGTCTCAGACATGGTCTTACACT-AGCTTTCAGGTCTTGAG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATT-AG
* * *
87337368 GCTGATGCTATGTCGCAGACATGGTCTTACACTGACTCTCATA-ATGT-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATAT-TAG
87337416 GCCGATG-CATGTCCCAGACAT-GTCTTACACTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
87337448 GCACACATAT
Statistics
Matches: 178, Mismatches: 44, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
46 11 0.06
47 12 0.07
48 35 0.20
49 3 0.02
50 114 0.64
51 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATTAG
Found at i:87348333 original size:21 final size:21
Alignment explanation
Indices: 87348307--87348347 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
87348297 CATACTACCT
87348307 GGATGCACAGATAAACAACCC
1 GGATGCACAGATAAACAACCC
*
87348328 GGATGCATAGATAAACAACC
1 GGATGCACAGATAAACAACC
87348348 ATTATGTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.24, G:0.20, T:0.12
Consensus pattern (21 bp):
GGATGCACAGATAAACAACCC
Found at i:87352150 original size:114 final size:114
Alignment explanation
Indices: 87352009--87352350 Score: 657
Period size: 114 Copynumber: 3.0 Consensus size: 114
87351999 CGATGCCCAA
* *
87352009 AACATGACCTAAGAGTGATTCGGGACTAAACTGAGAACTTTAGAAAATTTCTTGGCACTTACAAA
1 AACATGACCTAAGAGTGATTCGAGACTAAACTGAGAACTTTAGAAAATTTCTTGGCACTTAGAAA
87352074 ATTTTTCATCAAAACAAGGGTCAGACGCCCGTGTGGCTTGGGCCACGCC
66 ATTTTTCATCAAAACAAGGGTCAGACGCCCGTGTGGCTTGGGCCACGCC
87352123 AACATGACCTAAGAGTGATTCGAGACTAAACTGAGAACTTTAGAAAATTTCTTGGCACTTAGAAA
1 AACATGACCTAAGAGTGATTCGAGACTAAACTGAGAACTTTAGAAAATTTCTTGGCACTTAGAAA
87352188 ATTTTTCATCAAAACAAGGGTCAGACGCCCGTGTGGCTTGGGCCACGCC
66 ATTTTTCATCAAAACAAGGGTCAGACGCCCGTGTGGCTTGGGCCACGCC
*
87352237 AACATGACCTAAGAGGGATTCGAGACTAAACTGAGAACTTTAGAAAATTTCTTGGCACTTAGAAA
1 AACATGACCTAAGAGTGATTCGAGACTAAACTGAGAACTTTAGAAAATTTCTTGGCACTTAGAAA
87352302 ATTTTTCATCAAAACAAGGGTCAGACGCCCGTGTGGCTTGGGCCACGCC
66 ATTTTTCATCAAAACAAGGGTCAGACGCCCGTGTGGCTTGGGCCACGCC
87352351 CATGTGGGTA
Statistics
Matches: 225, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 225 1.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.24
Consensus pattern (114 bp):
AACATGACCTAAGAGTGATTCGAGACTAAACTGAGAACTTTAGAAAATTTCTTGGCACTTAGAAA
ATTTTTCATCAAAACAAGGGTCAGACGCCCGTGTGGCTTGGGCCACGCC
Found at i:87360348 original size:50 final size:50
Alignment explanation
Indices: 87360292--87360477 Score: 198
Period size: 50 Copynumber: 3.7 Consensus size: 50
87360282 TAAGATGGTT
** *
87360292 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTTTACCAGATAA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAA
* * * *
87360342 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGACAA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAA
* * * **
87360392 CTTCA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTATC-TGTACCAGATTG
1 -TT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA-CGTATACCAGATAA
* *
87360443 TT-GGTCGCATGTGTAATACTAAGTGCAGGCTACTA
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
87360478 TGCGTATCAG
Statistics
Matches: 112, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
49 28 0.25
50 45 0.40
51 38 0.34
52 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAA
Found at i:87360520 original size:100 final size:101
Alignment explanation
Indices: 87360305--87360523 Score: 253
Period size: 100 Copynumber: 2.2 Consensus size: 101
87360295 GGTCATGTGT
* * *
87360305 GTAGTACTAAGTGCAGGCTACTACGTTTACCAGATAATTAGGTCGCATGTGTAGTACTAAGTGCA
1 GTAGTAATAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCATGTGTAATACTAAGTGCA
** *
87360370 GGCTACTATGCATACCAGACAACTTCAATCACGTGT
66 GGCTACTATGCATACCAGACAACTTCAATCACAAGG
* **
87360406 GTAGTACTAAGTGCAGGCTACTATC-TGTACCAGATTGTT-GGTCGCATGTGTAATACTAAGTGC
1 GTAGTAATAAGTGCAGGCTACTA-CGTGTACCAGATAATTAGGTCGCATGTGTAATACTAAGTGC
* * * * ** *
87360469 AGGCTACTATGCGTATCAGATAGCTTCGGTTACAAGG
65 AGGCTACTATGCATACCAGACAACTTCAATCACAAGG
* *
87360506 GTGGTAATATGTGCAGGC
1 GTAGTAATAAGTGCAGGC
87360524 AACCATGTAT
Statistics
Matches: 100, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
100 65 0.65
101 34 0.34
102 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (101 bp):
GTAGTAATAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCGCATGTGTAATACTAAGTGCA
GGCTACTATGCATACCAGACAACTTCAATCACAAGG
Found at i:87360711 original size:16 final size:15
Alignment explanation
Indices: 87360690--87360719 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
87360680 GAATGGAGTA
87360690 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
87360706 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
87360720 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:87362786 original size:16 final size:15
Alignment explanation
Indices: 87362765--87362798 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
87362755 ATACACACTT
*
87362765 TAACATACATTTAACA
1 TAACATA-AATTAACA
87362781 TAACATAAATTAACA
1 TAACATAAATTAACA
87362796 TAA
1 TAA
87362799 ATATCTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29
Consensus pattern (15 bp):
TAACATAAATTAACA
Found at i:87363127 original size:43 final size:42
Alignment explanation
Indices: 87363067--87363195 Score: 152
Period size: 42 Copynumber: 3.0 Consensus size: 42
87363057 CACCTAGTAC
* * * **
87363067 CATACCAACGCCATATCCCAGATATGGTCTTACATGGGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
*
87363109 CATATCAATGCCAATATCCCAGCTATGGTCTTACACGAAATCT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACACGAAATCT
* * *
87363152 CATATCGATTCCATATCCCA-ATTATGGTCTTACACGTAATCT
1 CATATCAATGCCATATCCCAGA-TATGGTCTTACACGAAATCT
87363194 CA
1 CA
87363196 ACTAACCCTA
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
42 39 0.52
43 36 0.48
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
Found at i:87371103 original size:32 final size:32
Alignment explanation
Indices: 87371067--87371132 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
87371057 TGGTCGTGCA
*
87371067 ACATGACAGTGTGCCGTACACAGTTGAGACAG
1 ACATGACAGTGTGCCGCACACAGTTGAGACAG
87371099 ACATGACAGTGTGCCGCACACAGTTGAGACAG
1 ACATGACAGTGTGCCGCACACAGTTGAGACAG
87371131 AC
1 AC
87371133 GCCCGTGTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.32, C:0.24, G:0.27, T:0.17
Consensus pattern (32 bp):
ACATGACAGTGTGCCGCACACAGTTGAGACAG
Found at i:87371429 original size:16 final size:16
Alignment explanation
Indices: 87371408--87371441 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
87371398 ATATGTTATA
87371408 AACTTACCAATTTCTC
1 AACTTACCAATTTCTC
87371424 AACTTACCAATTTCTC
1 AACTTACCAATTTCTC
87371440 AA
1 AA
87371442 ATTTGCACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (16 bp):
AACTTACCAATTTCTC
Found at i:87372174 original size:44 final size:44
Alignment explanation
Indices: 87372138--87372243 Score: 142
Period size: 43 Copynumber: 2.4 Consensus size: 44
87372128 TGCCACTGTT
* *
87372138 CCAGACATGGTCTTACACGTAAATCATAAGTTGATGCCAACCTC
1 CCAGACATGGTCTTACACGTAAATCATAAGTCGATGCCAACATC
* * * **
87372182 CCGGACGTGCTCTTA-ATATAAATCATAAGTCGATGCCAACATC
1 CCAGACATGGTCTTACACGTAAATCATAAGTCGATGCCAACATC
87372225 CCAGACATGGTCTTACACG
1 CCAGACATGGTCTTACACG
87372244 AAAACACATA
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
43 36 0.73
44 13 0.27
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (44 bp):
CCAGACATGGTCTTACACGTAAATCATAAGTCGATGCCAACATC
Found at i:87373702 original size:42 final size:42
Alignment explanation
Indices: 87373587--87373704 Score: 112
Period size: 43 Copynumber: 2.8 Consensus size: 42
87373577 ATACCAATGC
** *
87373587 CATATCCCAGATATGGTCTTACAT-GGGATTTCATATCGATGA
1 CATATCCCAGATATGGTCTTAC-TCGAAATCTCATATCGATGA
* * * * * *
87373629 CAATAGCCCAGCTATTGTCTTACACAAAATCTCATATCGATGT
1 C-ATATCCCAGATATGGTCTTACTCGAAATCTCATATCGATGA
* *
87373672 CATATCCCGGATATGGTCTTACTCGTAATCTCA
1 CATATCCCAGATATGGTCTTACTCGAAATCTCA
87373705 ACTAACCATA
Statistics
Matches: 58, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
42 26 0.45
43 32 0.55
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACTCGAAATCTCATATCGATGA
Found at i:87378091 original size:41 final size:41
Alignment explanation
Indices: 87378034--87378115 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
87378024 GTGCTCAGGG
87378034 GCTAGAAATTGAAAAGGAACTCTTTAATCTTCGTCATTCAT
1 GCTAGAAATTGAAAAGGAACTCTTTAATCTTCGTCATTCAT
87378075 GCTAGAAATTGAAAAGGAACTCTTTAATCTTCGTCATTCAT
1 GCTAGAAATTGAAAAGGAACTCTTTAATCTTCGTCATTCAT
87378116 CATTGAAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (41 bp):
GCTAGAAATTGAAAAGGAACTCTTTAATCTTCGTCATTCAT
Done.