Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 279 of 279
Found at i:90898411 original size:27 final size:27
Alignment explanation
Indices: 90898370--90898439 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 27
90898360 AAAAAATTGT
* *
90898370 AAAAATTATAAAAAAAATTGTATTTT-TTA
1 AAAAATTAT-AAAAATATT-T-TTTTGTAA
*
90898399 AAAAATTTTAAAAATATTTTTTTGTAA
1 AAAAATTATAAAAATATTTTTTTGTAA
90898426 AAAAATTATAAAAA
1 AAAAATTATAAAAA
90898440 GGTATTTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 4 0.11
27 16 0.44
28 8 0.22
29 8 0.22
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (27 bp):
AAAAATTATAAAAATATTTTTTTGTAA
Found at i:90905471 original size:13 final size:14
Alignment explanation
Indices: 90905453--90905484 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
90905443 TATGCTTGTG
90905453 AAAAAAT-AAAATA
1 AAAAAATAAAAATA
90905466 AAAAAATAAAAATA
1 AAAAAATAAAAATA
90905480 AAAAA
1 AAAAA
90905485 CACACAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAAAATAAAAATA
Found at i:90906218 original size:2 final size:2
Alignment explanation
Indices: 90906211--90906239 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
90906201 ACCATTGACG
90906211 TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
90906240 CAAAGCCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:90911800 original size:3 final size:3
Alignment explanation
Indices: 90911762--90911838 Score: 57
Period size: 3 Copynumber: 25.3 Consensus size: 3
90911752 TAGTAATGAT
* * * * *
90911762 ATA ATA ATG ATA ATA GTG ATA AAA AGTA ACA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA
* * *
90911808 ATA AT- ATCA ATA ATA ATG ATG ATG ATA ATA A
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA A
90911839 ATAAAGTGGG
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
2 2 0.03
3 53 0.90
4 4 0.07
ACGTcount: A:0.58, C:0.03, G:0.09, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:90918645 original size:118 final size:118
Alignment explanation
Indices: 90918438--90918671 Score: 380
Period size: 118 Copynumber: 2.0 Consensus size: 118
90918428 AATTCCTTAC
*
90918438 AAAATCATCAATAAAGGTTAGCATATAATTAGCTCCACCTCTCGAAGGCACTCTGGATGGCCCCC
1 AAAATCATCAATAAAGGTTAGCATATAATCAGCTCCACCTCTCGAAGGCACTCTGGATGGCCCCC
90918503 ACAGATCAGAATGAATATACTCCAATA-TTCTCTTCGTGTTATGAATTCCTGGA
66 ACAGATCAGAATGAATATACTCCAATATTTC-CTTCGTGTTATGAATTCCTGGA
* * *
90918556 AAAATCATCGATAAAGGTTAGCATATAATCAGCTCCACCTCTCGAAGGCATTCTGGATGGCCCCT
1 AAAATCATCAATAAAGGTTAGCATATAATCAGCTCCACCTCTCGAAGGCACTCTGGATGGCCCCC
* * * *
90918621 ACAGATCAGAATGAGTATATTCCAATGTTTCCTTCGTGTTATGGATTCCTG
66 ACAGATCAGAATGAATATACTCCAATATTTCCTTCGTGTTATGAATTCCTG
90918672 TAGTGAATCG
Statistics
Matches: 107, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
118 104 0.97
119 3 0.03
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (118 bp):
AAAATCATCAATAAAGGTTAGCATATAATCAGCTCCACCTCTCGAAGGCACTCTGGATGGCCCCC
ACAGATCAGAATGAATATACTCCAATATTTCCTTCGTGTTATGAATTCCTGGA
Found at i:90925967 original size:30 final size:31
Alignment explanation
Indices: 90925931--90925990 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
90925921 TTATTTTATT
*
90925931 GTTAA-TTTTCTTATTATTTTAGAGGCATTC
1 GTTAATTTTTCTTATTATTTTAGAGACATTC
*
90925961 GTTAATTTTTTTTATTATTTTAGAGACATT
1 GTTAATTTTTCTTATTATTTTAGAGACATT
90925991 TGCTTGTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 5 0.19
31 22 0.81
ACGTcount: A:0.25, C:0.07, G:0.12, T:0.57
Consensus pattern (31 bp):
GTTAATTTTTCTTATTATTTTAGAGACATTC
Found at i:90927333 original size:30 final size:31
Alignment explanation
Indices: 90927297--90927356 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
90927287 TTATTTTATT
*
90927297 GTTAA-TTTTCTTATTATTTTAGAGGCATTC
1 GTTAATTTTTCTTATTATTTTAGAGACATTC
*
90927327 GTTAATTTTTTTTATTATTTTAGAGACATT
1 GTTAATTTTTCTTATTATTTTAGAGACATT
90927357 TGCTTGTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 5 0.19
31 22 0.81
ACGTcount: A:0.25, C:0.07, G:0.12, T:0.57
Consensus pattern (31 bp):
GTTAATTTTTCTTATTATTTTAGAGACATTC
Found at i:90933262 original size:132 final size:131
Alignment explanation
Indices: 90932950--90933286 Score: 432
Period size: 131 Copynumber: 2.6 Consensus size: 131
90932940 AGGCGATATC
* * *
90932950 CGATATTTGGCAATTCGAGGAATCGTGCCCTA-AAGTGTTGGGTTGCAATTTCTCGTTTGCTCAA
1 CGATATTTGGCAATTCGAGGAATCGTGCCCTATCA-TGCTGGGTTGCAATTTCTCGTTTGTTCAA
* * * * *
90933014 AGTAATCGAGGGTCCCTCTAGAATTTCACCTATGTCTTTTAAAAATCCTTCAAACGAAGGTGATG
65 AATAATCGAAGGTCCCTCTAGAATTACACCTATGTCTTTTAAAAATCCTCCAAACGAAGGTAATG
90933079 TT
130 TT
* * * * *
90933081 CGATATTCGACAATTCGCGGAATAGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGTTCAAA
1 CGATATTTGGCAATTCGAGGAATCGTGCCCTATCATGCTGGGTTGCAATTTCTCGTTTGTTCAAA
* * *
90933146 ATAATCGAAGGTCCCTTTTGAATTACACTTATGT-TTTCTAAAAA-CTCTCCAAAACGAAGGTAA
66 ATAATCGAAGGTCCCTCTAGAATTACACCTATGTCTTT-TAAAAATC-CTCC-AAACGAAGGTAA
90933209 TGTT
128 TGTT
*
90933213 CGATGTTTGGCAATTCGAGGAATCGTGCCCTATCATGCTGGGTTGCAATTTC-C-TATTGGTTCA
1 CGATATTTGGCAATTCGAGGAATCGTGCCCTATCATGCTGGGTTGCAATTTCTCGT-TT-GTTCA
90933276 AAATAATCGAA
64 AAATAATCGAA
90933287 CATCCCCTTT
Statistics
Matches: 178, Mismatches: 22, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
130 5 0.03
131 96 0.54
132 77 0.43
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (131 bp):
CGATATTTGGCAATTCGAGGAATCGTGCCCTATCATGCTGGGTTGCAATTTCTCGTTTGTTCAAA
ATAATCGAAGGTCCCTCTAGAATTACACCTATGTCTTTTAAAAATCCTCCAAACGAAGGTAATGT
T
Found at i:90933316 original size:132 final size:129
Alignment explanation
Indices: 90932950--90933402 Score: 425
Period size: 132 Copynumber: 3.4 Consensus size: 129
90932940 AGGCGATATC
* * *
90932950 CGATATTTGGCAATTCGAGGAATCGTGCCCTA-AAGTGTTGGGTTGCAATTTCTCGTTTGCTCAA
1 CGATATTTGGCAATTCGAGGAATCGTGCCCTATCA-TGCTGGGTTGCAATTTCTCGTTTGTTCAA
* * * * *
90933014 AGTAATCGAGGGTCCCTCTAGAATTTCACCTATGTCTTTTAAAAA-TCCTTC-AAACGAAGGTGA
65 AATAATCGAAGGTCCCTTTAGAATTTC-CCTATGT-TTCTAAAAACT-C-TCAAAACGAAGGTAA
90933077 TGTT
126 TGTT
* * * * *
90933081 CGATATTCGACAATTCGCGGAATAGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGTTCAAA
1 CGATATTTGGCAATTCGAGGAATCGTGCCCTATCATGCTGGGTTGCAATTTCTCGTTTGTTCAAA
* * *
90933146 ATAATCGAAGGTCCCTTTTGAATTACACTTATGTTTTCTAAAAACTCTCCAAAACGAAGGTAATG
66 ATAATCGAAGGTCCCTTTAGAATTTC-CCTATG-TTTCTAAAAACTCT-CAAAACGAAGGTAATG
90933211 TT
128 TT
*
90933213 CGATGTTTGGCAATTCGAGGAATCGTGCCCTATCATGCTGGGTTGCAATTTC-C-TATTGGTTCA
1 CGATATTTGGCAATTCGAGGAATCGTGCCCTATCATGCTGGGTTGCAATTTCTCGT-TT-GTTCA
** * * ** *
90933276 AAATAATCGAACATCCCCTTTAGAATTTCCCTCATGTTTCTTCAAAACTCTAAAAAATAAGGCAA
64 AAATAATCGAAGGT-CCCTTTAGAATTTCCCT-ATGTTTC-TAAAAACTCTCAAAACGAAGGTAA
*
90933341 TGCT
126 TGTT
* * * * * * *
90933345 CGATGTTTAGAAATTCGAAGAA-CTGTGCCCTA-CTGTGCTGGGTTTCGATTTTCTCGTT
1 CGATATTTGGCAATTCGAGGAATC-GTGCCCTATC-ATGCTGGGTTGC-AATTTCTCGTT
90933403 GGACTAAATA
Statistics
Matches: 268, Mismatches: 39, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
130 2 0.01
131 98 0.37
132 136 0.51
133 29 0.11
134 2 0.01
135 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.34
Consensus pattern (129 bp):
CGATATTTGGCAATTCGAGGAATCGTGCCCTATCATGCTGGGTTGCAATTTCTCGTTTGTTCAAA
ATAATCGAAGGTCCCTTTAGAATTTCCCTATGTTTCTAAAAACTCTCAAAACGAAGGTAATGTT
Found at i:90935971 original size:29 final size:29
Alignment explanation
Indices: 90935929--90935984 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
90935919 CGTTTCTAAG
90935929 TGGTGAAATTGTACCGAAATTTATAAAAA
1 TGGTGAAATTGTACCGAAATTTATAAAAA
90935958 TGGTGAAATTGTACCGAAATTTATAAA
1 TGGTGAAATTGTACCGAAATTTATAAA
90935985 GCCATGTACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.43, C:0.07, G:0.18, T:0.32
Consensus pattern (29 bp):
TGGTGAAATTGTACCGAAATTTATAAAAA
Found at i:90939347 original size:3 final size:3
Alignment explanation
Indices: 90939339--90939379 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
90939329 ATTACATCCA
90939339 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
90939380 AACATGTGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:90943717 original size:3 final size:3
Alignment explanation
Indices: 90943709--90943737 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
90943699 ATTACATCCA
90943709 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
90943738 AACATGTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:90944093 original size:28 final size:28
Alignment explanation
Indices: 90944061--90944117 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
90944051 TAGAATGGAG
*
90944061 TAAAAGGATTATAGTATAATGCTAGATA
1 TAAAAGGATTATAGTATAAAGCTAGATA
90944089 TAAAAGGATTATAGTATAAAGCTAGATA
1 TAAAAGGATTATAGTATAAAGCTAGATA
90944117 T
1 T
90944118 CATTCTTTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.47, C:0.04, G:0.18, T:0.32
Consensus pattern (28 bp):
TAAAAGGATTATAGTATAAAGCTAGATA
Found at i:90949650 original size:62 final size:62
Alignment explanation
Indices: 90949510--90949655 Score: 231
Period size: 62 Copynumber: 2.4 Consensus size: 62
90949500 CAATTATAAA
* *
90949510 TAAAACCATTAGAGCTTTCTAGGGACTCTAATTGTTCCTAGTATTCACAATCCAACTGATCT
1 TAAAACCATTAGAGCTTTCTAGGGACCCTAATTGTTCCCAGTATTCACAATCCAACTGATCT
* *
90949572 TAAAACTATTAGAGCTTTCTAGGGACCCTAATTG-TCCCAGTATTCACAATTCAACTGATCT
1 TAAAACCATTAGAGCTTTCTAGGGACCCTAATTGTTCCCAGTATTCACAATCCAACTGATCT
*
90949633 TAAAACCATTTAAAGCTTTCTAG
1 TAAAACCA-TTAGAGCTTTCTAG
90949656 AGATTTTATC
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
61 32 0.42
62 45 0.58
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (62 bp):
TAAAACCATTAGAGCTTTCTAGGGACCCTAATTGTTCCCAGTATTCACAATCCAACTGATCT
Found at i:90956225 original size:19 final size:19
Alignment explanation
Indices: 90956203--90956239 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
90956193 AACCTTTTAA
*
90956203 ATATTTTTTTGAAATTTTT
1 ATATTTTTTTAAAATTTTT
90956222 ATATTTTTTTAAAATTTT
1 ATATTTTTTTAAAATTTT
90956240 AAAAAATTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
ATATTTTTTTAAAATTTTT
Found at i:90956239 original size:30 final size:30
Alignment explanation
Indices: 90956165--90956239 Score: 80
Period size: 31 Copynumber: 2.4 Consensus size: 30
90956155 TCATCAAAAG
*
90956165 TTTTAAAAATATTTTTTAGAATTTTTATAAC
1 TTTTTAAAAT-TTTTTTAGAATTTTTATAAC
* **
90956196 CTTTTAAATATTTTTTT-GAAATTTTTATATT
1 TTTTTAAA-ATTTTTTTAG-AATTTTTATAAC
90956227 TTTTTAAAATTTT
1 TTTTTAAAATTTT
90956240 AAAAAATTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
30 6 0.16
31 29 0.78
32 2 0.05
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (30 bp):
TTTTTAAAATTTTTTTAGAATTTTTATAAC
Found at i:90956594 original size:14 final size:14
Alignment explanation
Indices: 90956575--90956601 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
90956565 TAAAAAAATA
90956575 TTTAGTTTTTAAAC
1 TTTAGTTTTTAAAC
90956589 TTTAGTTTTTAAA
1 TTTAGTTTTTAAA
90956602 ATTTTATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.07, T:0.59
Consensus pattern (14 bp):
TTTAGTTTTTAAAC
Found at i:90956607 original size:15 final size:15
Alignment explanation
Indices: 90956569--90956607 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
90956559 AAGGAATAAA
90956569 AAAATATTTAGTTTTT
1 AAAAT-TTTAGTTTTT
*
90956585 -AAACTTTAGTTTTT
1 AAAATTTTAGTTTTT
90956599 AAAATTTTA
1 AAAATTTTA
90956608 TTTAAATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (15 bp):
AAAATTTTAGTTTTT
Found at i:90958066 original size:3 final size:3
Alignment explanation
Indices: 90958058--90958087 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
90958048 GATGCACGCC
90958058 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
90958088 CTTTTTATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:90960999 original size:44 final size:44
Alignment explanation
Indices: 90960915--90961001 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
90960905 GTGTAGTAAA
* * **
90960915 AATGTTAATTAAGCAAGAAGTATGATTCATACAGTTTAAGATAC
1 AATGTTAATTAAGCAAAAAGTACGATTCATACAGGGTAAGATAC
* * *
90960959 AATGTTCATTGAGCAAAAAGTACGATTCATACGGGGTAAGATA
1 AATGTTAATTAAGCAAAAAGTACGATTCATACAGGGTAAGATA
90961002 TCTAAAACAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (44 bp):
AATGTTAATTAAGCAAAAAGTACGATTCATACAGGGTAAGATAC
Found at i:90962777 original size:12 final size:11
Alignment explanation
Indices: 90962751--90962814 Score: 62
Period size: 12 Copynumber: 5.9 Consensus size: 11
90962741 TTTAAAAATT
90962751 AAAAATTATT-
1 AAAAATTATTA
90962761 -AAAATTATTA
1 AAAAATTATTA
*
90962771 AATAAATTATAA
1 AA-AAATTATTA
* *
90962783 AAAATATTTTTT
1 AAAA-ATTATTA
90962795 AAAAATT-TTA
1 AAAAATTATTA
90962805 AAAAATTATT
1 AAAAATTATT
90962815 TAAATGCTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
9 9 0.20
10 9 0.20
11 8 0.18
12 18 0.41
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
AAAAATTATTA
Found at i:90962816 original size:21 final size:22
Alignment explanation
Indices: 90962749--90962818 Score: 74
Period size: 21 Copynumber: 3.2 Consensus size: 22
90962739 TTTTTAAAAA
90962749 TTAAAAATTATT--AAAATTAT
1 TTAAAAATTATTAAAAAATTAT
* * *
90962769 TAAATAAATTATAAAAAATATTTT
1 TTAA-AAATTATTAAAAA-ATTAT
90962793 TTAAAAATT-TTAAAAAATTAT
1 TTAAAAATTATTAAAAAATTAT
90962814 TTAAA
1 TTAAA
90962819 TGCTTATTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
20 3 0.08
21 16 0.40
22 6 0.15
23 8 0.20
24 7 0.17
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TTAAAAATTATTAAAAAATTAT
Found at i:90964636 original size:7 final size:6
Alignment explanation
Indices: 90964620--90964650 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
90964610 CCTACATAAC
90964620 TTTCTT TTTCTTT TTTCTT TTTCTT TTTCTT
1 TTTCTT TTTC-TT TTTCTT TTTCTT TTTCTT
90964651 CTCTAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTCTT
Found at i:90964638 original size:13 final size:13
Alignment explanation
Indices: 90964620--90964647 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
90964610 CCTACATAAC
90964620 TTTCTTTTTCTTT
1 TTTCTTTTTCTTT
90964633 TTTCTTTTTCTTT
1 TTTCTTTTTCTTT
90964646 TT
1 TT
90964648 CTTCTCTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTCTTTTTCTTT
Found at i:90966624 original size:7 final size:7
Alignment explanation
Indices: 90966612--90966644 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
90966602 TTTAAAACTG
90966612 AGAAAAA
1 AGAAAAA
90966619 AGAAAAA
1 AGAAAAA
90966626 AGAAAAA
1 AGAAAAA
90966633 AGAAAAA
1 AGAAAAA
90966640 A-AAAA
1 AGAAAA
90966645 TTAAATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.15
7 22 0.85
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AGAAAAA
Found at i:90969206 original size:23 final size:23
Alignment explanation
Indices: 90969180--90969224 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
90969170 CGGATGAATT
90969180 TAAAAAAA-AATCAAATAAAAAAC
1 TAAAAAAAGAAT-AAATAAAAAAC
*
90969203 TAAAAAAAGGATAAATAAAAAA
1 TAAAAAAAGAATAAATAAAAAA
90969225 TTTATAAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.13
Consensus pattern (23 bp):
TAAAAAAAGAATAAATAAAAAAC
Found at i:90971757 original size:15 final size:16
Alignment explanation
Indices: 90971739--90971768 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
90971729 ATGGAAACTA
90971739 TGGTAT-ATGAAATAT
1 TGGTATAATGAAATAT
90971754 TGGTATAATGAAATA
1 TGGTATAATGAAATA
90971769 AATGATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (16 bp):
TGGTATAATGAAATAT
Found at i:90979935 original size:19 final size:17
Alignment explanation
Indices: 90979895--90979938 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
90979885 ATATAAGTAA
90979895 ACATTATT-TTATTATT
1 ACATTATTATTATTATT
*
90979911 AAATTATTATTATTATAAT
1 ACATTATTATTATTAT--T
90979930 ACATTATTA
1 ACATTATTA
90979939 AAATAAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 7 0.30
17 7 0.30
19 9 0.39
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.55
Consensus pattern (17 bp):
ACATTATTATTATTATT
Found at i:90980055 original size:21 final size:21
Alignment explanation
Indices: 90980000--90980055 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 21
90979990 AAATAGAATT
*
90980000 GAAACGAAAACAGGGAAAGAAA
1 GAAAAGAAAA-AGGGAAAGAAA
*
90980022 G--GAGAAAAA--GAAAGAAA
1 GAAAAGAAAAAGGGAAAGAAA
90980039 GAAAAGAAAAAGGGAAA
1 GAAAAGAAAAAGGGAAA
90980056 TTAGGGTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 9
0.69 0.08 0.23
Matches are distributed among these distances:
17 9 0.33
19 8 0.30
20 5 0.19
21 4 0.15
22 1 0.04
ACGTcount: A:0.68, C:0.04, G:0.29, T:0.00
Consensus pattern (21 bp):
GAAAAGAAAAAGGGAAAGAAA
Found at i:90981091 original size:27 final size:25
Alignment explanation
Indices: 90981061--90981123 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
90981051 TTAAGGAACC
* *
90981061 TTAGCGCGTTCTCTGATTATTAGCACG
1 TTAGCGC--TCTCTGATTATTAACACA
*
90981088 TTAGTGCTCTCTGATTATTAACACA
1 TTAGCGCTCTCTGATTATTAACACA
*
90981113 TTAGTGCTCTC
1 TTAGCGCTCTC
90981124 CGTTTAGCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 27 0.82
27 6 0.18
ACGTcount: A:0.21, C:0.22, G:0.17, T:0.40
Consensus pattern (25 bp):
TTAGCGCTCTCTGATTATTAACACA
Found at i:90981098 original size:25 final size:24
Alignment explanation
Indices: 90981070--90981177 Score: 107
Period size: 22 Copynumber: 4.5 Consensus size: 24
90981060 CTTAGCGCGT
*
90981070 TCTCTGATTATTAGCACGTTAGTGC
1 TCTCTG-TTATTAGCACATTAGTGC
*
90981095 TCTCTGATTATTAACACATTAGTGC
1 TCTCTG-TTATTAGCACATTAGTGC
* *
90981120 TCTCCG-T-TTAGCACATTCGTGC
1 TCTCTGTTATTAGCACATTAGTGC
* *
90981142 TCTCTG-TA-TAGTACTTTAGTGC
1 TCTCTGTTATTAGCACATTAGTGC
90981164 TCTCTGTTCATTAG
1 TCTCTGTT-ATTAG
90981178 TGCATAATAA
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
22 36 0.51
23 2 0.03
24 1 0.01
25 31 0.44
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (24 bp):
TCTCTGTTATTAGCACATTAGTGC
Found at i:90982909 original size:25 final size:24
Alignment explanation
Indices: 90982881--90982934 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
90982871 CTTTTCGAAG
*
90982881 TTTATTTTGCACTGAGTTGTATTGT
1 TTTATTTTGCACTGAGTTATATT-T
*
90982906 TTTATTTTGTACTGAGTTATATTT
1 TTTATTTTGCACTGAGTTATATTT
90982930 TTTAT
1 TTTAT
90982935 CAATGTCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.19, C:0.06, G:0.15, T:0.61
Consensus pattern (24 bp):
TTTATTTTGCACTGAGTTATATTT
Found at i:90990582 original size:46 final size:45
Alignment explanation
Indices: 90990438--90990605 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 45
90990428 TTTGTGTGCT
90990438 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCAC-TTGATGAGAGCC
* * *
90990484 AGTGTATGACCATGTCTGGGACATGGCATCGACA-TTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGCCACTT--GATGAGAGCC
* *
90990532 AGTGTAAGATATGTCTGGGACGTGCATCGGCCACTTGATGCA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACTTGATG-AGAGCC
* *
90990578 AGTGTAAGGCATGTCTAGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
90990606 TACTTCATGA
Statistics
Matches: 102, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
45 2 0.02
46 44 0.43
47 33 0.32
48 23 0.23
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCACTTGATGAGAGCC
Found at i:91013980 original size:14 final size:15
Alignment explanation
Indices: 91013961--91013989 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
91013951 TTTGATTTTT
91013961 ATATTTTTT-TATAA
1 ATATTTTTTATATAA
91013975 ATATTTTTTATATAA
1 ATATTTTTTATATAA
91013990 TATAATCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
ATATTTTTTATATAA
Found at i:91016787 original size:26 final size:27
Alignment explanation
Indices: 91016753--91016806 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
91016743 GAAACAATAG
*
91016753 ATATCTTACTTTAA-AATTATAATTATT
1 ATATCTTACTTCAATAATT-TAATTATT
*
91016780 ATAT-TTACTTCAATAATTTATTTATT
1 ATATCTTACTTCAATAATTTAATTATT
91016806 A
1 A
91016807 GTATATTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (27 bp):
ATATCTTACTTCAATAATTTAATTATT
Found at i:91017977 original size:21 final size:21
Alignment explanation
Indices: 91017953--91017994 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
91017943 ATGCATTGCA
91017953 GCGCACTTAATCCATGTCTTT
1 GCGCACTTAATCCATGTCTTT
91017974 GCGCACTTAATCCATGTCTTT
1 GCGCACTTAATCCATGTCTTT
91017995 TTACACTGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.29, G:0.14, T:0.38
Consensus pattern (21 bp):
GCGCACTTAATCCATGTCTTT
Found at i:91018353 original size:23 final size:23
Alignment explanation
Indices: 91018327--91018379 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
91018317 GTTTACAATT
91018327 TTTTTTTGTTAATTTTATGATTA
1 TTTTTTTGTTAATTTTATGATTA
* *
91018350 TTTTTTAGTTAATTTTATTATTA
1 TTTTTTTGTTAATTTTATGATTA
*
91018373 ATTTTTT
1 TTTTTTT
91018380 AAAAATAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.72
Consensus pattern (23 bp):
TTTTTTTGTTAATTTTATGATTA
Found at i:91018364 original size:12 final size:12
Alignment explanation
Indices: 91018327--91018380 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
91018317 GTTTACAATT
*
91018327 TTTTTTTGTTAA
1 TTTTTTAGTTAA
*
91018339 TTTTAT-GATT-A
1 TTTTTTAG-TTAA
91018350 TTTTTTAGTTAA
1 TTTTTTAGTTAA
91018362 TTTTATTA-TTAA
1 TTTT-TTAGTTAA
91018374 TTTTTTA
1 TTTTTTA
91018381 AAAATAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
11 12 0.33
12 21 0.58
13 3 0.08
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (12 bp):
TTTTTTAGTTAA
Found at i:91018755 original size:17 final size:16
Alignment explanation
Indices: 91018711--91018756 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
91018701 ACCGAATATC
91018711 AAATTTAACT-A-AAA
1 AAATTTAACTAATAAA
*
91018725 AAATTTAAATTAATAAA
1 AAATTT-AACTAATAAA
91018742 AAATTCTAACTAATA
1 AAATT-TAACTAATA
91018757 GCACCTGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 6 0.23
15 3 0.12
16 1 0.04
17 15 0.58
18 1 0.04
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATTTAACTAATAAA
Found at i:91028960 original size:64 final size:64
Alignment explanation
Indices: 91028859--91028995 Score: 260
Period size: 64 Copynumber: 2.2 Consensus size: 64
91028849 CTTAAAGTAA
91028859 ACACAACTGTCAAAACTACTTCTTTTAAAATCATGAGAAGTCATAAAGGAATCAAACCTCTTGT
1 ACACAACTGTCAAAACTACTTCTTTTAAAATCATGAGAAGTCATAAAGGAATCAAACCTCTTGT
91028923 ACACAACTGTCAAAACTACTTCTTTTAAAATCATGAGAAGTCATAAAGGAATCAAACCTCTTGT
1 ACACAACTGTCAAAACTACTTCTTTTAAAATCATGAGAAGTCATAAAGGAATCAAACCTCTTGT
91028987 AC-C-ACTGTC
1 ACACAACTGTC
91028996 TTGCTGACTG
Statistics
Matches: 73, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
62 6 0.08
63 1 0.01
64 66 0.90
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (64 bp):
ACACAACTGTCAAAACTACTTCTTTTAAAATCATGAGAAGTCATAAAGGAATCAAACCTCTTGT
Found at i:91030906 original size:93 final size:93
Alignment explanation
Indices: 91030794--91030965 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
91030784 CGCCCATAAG
*
91030794 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
91030858 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
91030887 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
91030952 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
91030966 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:91030960 original size:46 final size:46
Alignment explanation
Indices: 91030787--91030962 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
91030777 TGTAACCCGC
* *
91030787 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
91030833 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
91030883 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
91030926 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
91030963 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91038463 original size:46 final size:46
Alignment explanation
Indices: 91038362--91038449 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
91038352 TGTAACCCGC
* * * *
91038362 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
91038408 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
91038450 AACCATCCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:91044710 original size:123 final size:120
Alignment explanation
Indices: 91044497--91044732 Score: 289
Period size: 123 Copynumber: 1.9 Consensus size: 120
91044487 CTCGGTTTGG
* * *
91044497 TTTAATTTAAATTTTGGATAAAAAATAATTAAATTATTTTATTCGTAAATCATTCTTGAAATTGT
1 TTTAATTTAAATTTTAGATAAAAAATAATTAAATCATTTTATTCG-AAATCATTCTTGAAATTGA
*
91044562 AACAGTATAGAATAAAAATCGAAATATC-TGAAACTGATAATTATGGTTCAGTTTAA
65 AACAGTATAGAATAAAAATCAAAATATCAT-AAACTGATAATTATGGTTCAGTTTAA
* * * **
91044618 TTTAATTTGATTTTTAGATAAAAAATAAATTAAATCATTTTATTC-AATTTTTTACTTTTGAAAT
1 TTTAATTTAAATTTTAGATAAAAAAT-AATTAAATCATTTTATTCGAAATCATT-C--TTGAAAT
* *
91044682 TGAAATC-GTATAGAATAAAAATTAAAATATCATAAACTGATAATTGTGGTT
62 TGAAA-CAGTATAGAATAAAAATCAAAATATCATAAACTGATAATTATGGTT
91044733 TGGTTTGGTT
Statistics
Matches: 98, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
120 5 0.05
121 24 0.24
122 17 0.17
123 50 0.51
124 2 0.02
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.42
Consensus pattern (120 bp):
TTTAATTTAAATTTTAGATAAAAAATAATTAAATCATTTTATTCGAAATCATTCTTGAAATTGAA
ACAGTATAGAATAAAAATCAAAATATCATAAACTGATAATTATGGTTCAGTTTAA
Found at i:91046631 original size:18 final size:17
Alignment explanation
Indices: 91046610--91046652 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
91046600 ATTTTAAACA
*
91046610 AATAAATTATTTAAAATT
1 AATAAATT-TTAAAAATT
91046628 AATAAAATTTTAAAAATT
1 AAT-AAATTTTAAAAATT
*
91046646 AAAAAAT
1 AATAAAT
91046653 ATAAAATTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 4 0.18
18 13 0.59
19 5 0.23
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AATAAATTTTAAAAATT
Found at i:91047869 original size:9 final size:9
Alignment explanation
Indices: 91047857--91047896 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
91047847 AAAAAAACCC
*
91047857 AAAAAGAAT
1 AAAAATAAT
*
91047866 AAAAAATGAT
1 -AAAAATAAT
91047876 AAAAATAAT
1 AAAAATAAT
91047885 AAAAATAAT
1 AAAAATAAT
91047894 AAA
1 AAA
91047897 GATATGAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
9 20 0.74
10 7 0.26
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (9 bp):
AAAAATAAT
Found at i:91058354 original size:22 final size:23
Alignment explanation
Indices: 91058309--91058369 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
91058299 CGTGTGCCTC
* *
91058309 ATATTTGTATATTTTACTATTTT
1 ATATTTGTAAATTTTACTAATTT
*
91058332 ATATTTG-AAATTTTATTAATTT
1 ATATTTGTAAATTTTACTAATTT
*
91058354 AT-TTATATAAATTTTA
1 ATATT-TGTAAATTTTA
91058370 TTTATTATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 15 0.47
23 15 0.47
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (23 bp):
ATATTTGTAAATTTTACTAATTT
Found at i:91058371 original size:15 final size:16
Alignment explanation
Indices: 91058351--91058380 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
91058341 ATTTTATTAA
91058351 TTTATTTA-TATAAAT
1 TTTATTTATTATAAAT
91058366 TTTATTTATTATAAA
1 TTTATTTATTATAAA
91058381 ATAAAAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTATTTATTATAAAT
Found at i:91058612 original size:30 final size:32
Alignment explanation
Indices: 91058576--91058641 Score: 91
Period size: 30 Copynumber: 2.1 Consensus size: 32
91058566 AATAATATTT
*
91058576 ATTTTTATAAATTTTA-AAAATTTAAAT-TAA
1 ATTTTTATAAATTTTAGAAAATTAAAATATAA
* *
91058606 ATTTTTATTAATTTTAGAAGATTAAAATATAA
1 ATTTTTATAAATTTTAGAAAATTAAAATATAA
91058638 ATTT
1 ATTT
91058642 ATTTTTATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
30 15 0.48
31 9 0.29
32 7 0.23
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (32 bp):
ATTTTTATAAATTTTAGAAAATTAAAATATAA
Found at i:91061132 original size:13 final size:13
Alignment explanation
Indices: 91061114--91061138 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91061104 ATCGAATAGG
91061114 TTTTTTATTTTTA
1 TTTTTTATTTTTA
91061127 TTTTTTATTTTT
1 TTTTTTATTTTT
91061139 TTAGTTCTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:91071866 original size:25 final size:26
Alignment explanation
Indices: 91071823--91071890 Score: 70
Period size: 27 Copynumber: 2.7 Consensus size: 26
91071813 TTAGTATTTA
* *
91071823 AATTTGAT-TTT-AATATTTT-TCTT
1 AATTTGATATTTAAATTTTTTATCTC
*
91071846 AATTTGGTATTTAAATTTTTTTATCTC
1 AATTTGATATTTAAA-TTTTTTATCTC
*
91071873 AATTTGATATTTGAATTT
1 AATTTGATATTTAAATTT
91071891 GACACTTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
23 7 0.19
24 3 0.08
25 2 0.06
26 8 0.22
27 16 0.44
ACGTcount: A:0.28, C:0.04, G:0.07, T:0.60
Consensus pattern (26 bp):
AATTTGATATTTAAATTTTTTATCTC
Found at i:91071949 original size:59 final size:58
Alignment explanation
Indices: 91071838--91071949 Score: 136
Period size: 58 Copynumber: 1.9 Consensus size: 58
91071828 GATTTTAATA
* * ** *
91071838 TTTTTCTTAATTTGGTATTTAAATTTTTTTATCTCAATTTGATATTTGAATTTGACAC
1 TTTTTCTTAATTTGGTACTTAAACTTTTTTATCTCAATTTGATACCTAAATTTGACAC
* *
91071896 TTTTTTTTAATTTGGTACTTAAACTTTTTTAGGT-TCAATTTGGTACCTAAATTT
1 TTTTTCTTAATTTGGTACTTAAACTTTTTTA--TCTCAATTTGATACCTAAATTT
91071950 ATTAAAATGT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
58 28 0.62
59 16 0.36
60 1 0.02
ACGTcount: A:0.25, C:0.09, G:0.10, T:0.56
Consensus pattern (58 bp):
TTTTTCTTAATTTGGTACTTAAACTTTTTTATCTCAATTTGATACCTAAATTTGACAC
Found at i:91072455 original size:31 final size:32
Alignment explanation
Indices: 91072385--91072464 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 32
91072375 AAAAGATTAA
* * *
91072385 ATACCAACTTA-AGAAAAGTGTCGAGTTTAGG
1 ATACCAAATTAGAAAAAAGTGTCAAGTTTAGG
*
91072416 -TACTAAATTAGAAAAAAGTGTCAAGTTT-GG
1 ATACCAAATTAGAAAAAAGTGTCAAGTTTAGG
*
91072446 ATACCAAATTGGATAAAAA
1 ATACCAAATTAGA-AAAAA
91072465 AGTTTAGGTA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
30 10 0.25
31 25 0.62
32 5 0.12
ACGTcount: A:0.45, C:0.10, G:0.19, T:0.26
Consensus pattern (32 bp):
ATACCAAATTAGAAAAAAGTGTCAAGTTTAGG
Found at i:91073148 original size:32 final size:33
Alignment explanation
Indices: 91073095--91073163 Score: 88
Period size: 32 Copynumber: 2.1 Consensus size: 33
91073085 AGTAAATAAA
* *
91073095 AAAACAAAAATAGAAAAAAAGAACA-GAGAATG
1 AAAACAAAAATAGAAAAAAAGAAAATGAAAATG
*
91073127 AAAAC-AAAATAGAAAGGAAAGAAAATGAAAATG
1 AAAACAAAAATAGAAA-AAAAGAAAATGAAAATG
91073160 AAAA
1 AAAA
91073164 ATTACGGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 10 0.31
32 12 0.38
33 10 0.31
ACGTcount: A:0.72, C:0.04, G:0.16, T:0.07
Consensus pattern (33 bp):
AAAACAAAAATAGAAAAAAAGAAAATGAAAATG
Found at i:91073962 original size:16 final size:17
Alignment explanation
Indices: 91073931--91073963 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
91073921 TTCATAAGTA
91073931 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
91073948 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
91073964 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:91074476 original size:46 final size:46
Alignment explanation
Indices: 91074249--91074475 Score: 330
Period size: 46 Copynumber: 4.9 Consensus size: 46
91074239 TTTGACATGA
* * * * *
91074249 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* * *
91074295 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
91074341 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
91074387 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
91074433 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
91074476 GAGAGCACAC
Statistics
Matches: 169, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 165 0.98
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:91076603 original size:29 final size:30
Alignment explanation
Indices: 91076551--91076618 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
91076541 CACCCTTAAA
* *
91076551 ATATTTACACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
* *
91076581 ATATTTACGCT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
91076610 AGTATTTAC
1 A-TATTTAC
91076619 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:91081850 original size:35 final size:35
Alignment explanation
Indices: 91081804--91081875 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
91081794 ATGGAGATCG
*
91081804 AAAGAATGGTAATTTATTGACATATTTGGTTGAAC
1 AAAGAATGGTAATTTATTGACATATCTGGTTGAAC
91081839 AAAGAATGGTAATTTATTGACATATCTGGTTGAAC
1 AAAGAATGGTAATTTATTGACATATCTGGTTGAAC
91081874 AA
1 AA
91081876 TGGTACTAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.39, C:0.07, G:0.19, T:0.35
Consensus pattern (35 bp):
AAAGAATGGTAATTTATTGACATATCTGGTTGAAC
Found at i:91082261 original size:25 final size:24
Alignment explanation
Indices: 91082232--91082289 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
91082222 GTTATCATTT
*
91082232 AATTAATTTTTTTATAATTTTTAAA
1 AATTAATTTTTTTA-AAATTTTAAA
*
91082257 AATTATATATTTTTAAAATTTTAAA
1 AATTA-ATTTTTTTAAAATTTTAAA
*
91082282 ATTTAATT
1 AATTAATT
91082290 AAATACTGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 2 0.07
25 18 0.64
26 8 0.29
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
AATTAATTTTTTTAAAATTTTAAA
Found at i:91082270 original size:17 final size:16
Alignment explanation
Indices: 91082243--91082274 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
91082233 ATTAATTTTT
91082243 TTATAATTTTTAAAAA
1 TTATAATTTTTAAAAA
91082259 TTATATATTTTTAAAA
1 TTATA-ATTTTTAAAA
91082275 TTTTAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTATAATTTTTAAAAA
Found at i:91086434 original size:21 final size:21
Alignment explanation
Indices: 91086408--91086448 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
91086398 AGACGAGCAA
* *
91086408 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
91086429 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
91086449 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:91088387 original size:16 final size:16
Alignment explanation
Indices: 91088354--91088387 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
91088344 GGAGATTGTT
* *
91088354 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
91088370 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
91088386 AA
1 AA
91088388 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:91100472 original size:23 final size:23
Alignment explanation
Indices: 91100442--91100498 Score: 82
Period size: 21 Copynumber: 2.6 Consensus size: 23
91100432 ATTTTTGGAT
91100442 AGAAGAGATTTTTTTGAGATTCA
1 AGAAGAGATTTTTTTGAGATTCA
91100465 AGAAGAGA--TTTTTGAGATTCA
1 AGAAGAGATTTTTTTGAGATTCA
* *
91100486 AGAGGGGATTTTT
1 AGAAGAGATTTTT
91100499 CTTTTTTCGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 19 0.63
23 11 0.37
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (23 bp):
AGAAGAGATTTTTTTGAGATTCA
Found at i:91101106 original size:3 final size:3
Alignment explanation
Indices: 91101098--91101133 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
91101088 TGTATTTCTA
91101098 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
91101134 AATATGGTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:91101400 original size:16 final size:16
Alignment explanation
Indices: 91101379--91101409 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
91101369 CTATTGTTAC
91101379 TGTTATTATCATCACT
1 TGTTATTATCATCACT
*
91101395 TGTTATTCTCATCAC
1 TGTTATTATCATCAC
91101410 CATTATTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.23, G:0.06, T:0.48
Consensus pattern (16 bp):
TGTTATTATCATCACT
Found at i:91101660 original size:22 final size:22
Alignment explanation
Indices: 91101630--91101690 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
91101620 TTATTATATC
*
91101630 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
91101652 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
91101674 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
91101691 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:91101664 original size:3 final size:3
Alignment explanation
Indices: 91101499--91101645 Score: 72
Period size: 3 Copynumber: 50.0 Consensus size: 3
91101489 AACTTAATAG
* ** *
91101499 ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT AGC ACT ACTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT
* * * * * * *
91101548 -TT ATT ACT ATT ATT -TA ATAT ATT ATT TTT ACT ATT ATC GTC A-T
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
91101591 ATT GTT ACT ATT ACT ATT A-T ATT ATT A-T GTT ATT A-T ATCT TTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
*
91101634 ACT ATT ATT ATT
1 ATT ATT ATT ATT
91101646 GTTGTATTTT
Statistics
Matches: 104, Mismatches: 31, Indels: 18
0.68 0.20 0.12
Matches are distributed among these distances:
2 9 0.09
3 90 0.87
4 5 0.05
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:91102422 original size:233 final size:229
Alignment explanation
Indices: 91102007--91102428 Score: 772
Period size: 233 Copynumber: 1.8 Consensus size: 229
91101997 GGTTTTATCC
91102007 AACCCGATAGTGATTCTTTCACTAAAGTAAATATTTCGTATTTGGTAATCCGAGACAATCGTTCC
1 AACCCGATAGTGATTCTTTCACTAAAGTAAATATTTCGTATTTGGTAATCCGAGACAATCGTTCC
91102072 CTAACTTACTGGATTTCGATTTTTTTCTCACGTTTAACCTAAATAACAACATATTCTTTTAAATC
66 CTAACTTACTGGATTTCGATTTTTTTCTCACGTTTAACCTAAATAACAACATATTCTTTTAAATC
*
91102137 ATAATACGAGTGTTAAATAAAATACTTACTTTCTGATATTTGAGGTGTTGTGTCCTAACCAGGGA
131 ATAATACGAGTGTTAAATAAAATACTTACTCTCTGATATTTGAGGTGTTGTGTCCTAACCAGGGA
91102202 TTTAAATAGCGGTCCGTTACCGAAATAGCGGCCG
196 TTTAAATAGCGGTCCGTTACCGAAATAGCGGCCG
*
91102236 AACCCGATAGTGATTCTTTCACTGAAGTAAATATTTCGTATTTGGTAATCCGAGACAATCGTTCC
1 AACCCGATAGTGATTCTTTCACTAAAGTAAATATTTCGTATTTGGTAATCCGAGACAATCGTTCC
**
91102301 CTAACTTACTGGATTTCGATTTTTTTTTCTCTCACGTTTAACCTAAATAACGGCATATTCTTTTA
66 CTAACTTACTGGATTTCGA---TTTTTT-TCTCACGTTTAACCTAAATAACAACATATTCTTTTA
91102366 AATCATAATACGAGTGTTAAATAAAATACTTACTCTCTGATATTTGAGGTGTTGTGTCCTAAC
127 AATCATAATACGAGTGTTAAATAAAATACTTACTCTCTGATATTTGAGGTGTTGTGTCCTAAC
91102429 TCACTGGATA
Statistics
Matches: 185, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
229 83 0.45
232 6 0.03
233 96 0.52
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (229 bp):
AACCCGATAGTGATTCTTTCACTAAAGTAAATATTTCGTATTTGGTAATCCGAGACAATCGTTCC
CTAACTTACTGGATTTCGATTTTTTTCTCACGTTTAACCTAAATAACAACATATTCTTTTAAATC
ATAATACGAGTGTTAAATAAAATACTTACTCTCTGATATTTGAGGTGTTGTGTCCTAACCAGGGA
TTTAAATAGCGGTCCGTTACCGAAATAGCGGCCG
Found at i:91103342 original size:26 final size:27
Alignment explanation
Indices: 91103290--91103343 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
91103280 TTTATGATAG
*
91103290 TATAAAATATTTAAAAAGTTAATTTATA
1 TATAAAATATTTAAAAAG-TAAATTATA
91103318 TATAAAATA-TTAATAAA-TAAATTATA
1 TATAAAATATTTAA-AAAGTAAATTATA
91103344 AGAATGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 8 0.33
27 4 0.17
28 12 0.50
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (27 bp):
TATAAAATATTTAAAAAGTAAATTATA
Found at i:91112408 original size:21 final size:20
Alignment explanation
Indices: 91112378--91112417 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
91112368 TGTGATAGAG
91112378 TTTTTTATATTTTTAAAAAA
1 TTTTTTATATTTTTAAAAAA
91112398 TTTTATTATATTTTTCAAAA
1 TTTT-TTATATTTTT-AAAA
91112418 TAACAAAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 10 0.56
22 4 0.22
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTTTATATTTTTAAAAAA
Found at i:91114951 original size:77 final size:77
Alignment explanation
Indices: 91114853--91115160 Score: 607
Period size: 77 Copynumber: 4.0 Consensus size: 77
91114843 GCTAACTTTT
91114853 GAAGAGAAAATTGGTTTAGGTGAAAGAAGATTGCTTCATTTCACTAAGAGAAACATCGGCAGACT
1 GAAGAGAAAATTGGTTTAGGTGAAAGAAGATTGCTTCATTTCACTAAGAGAAACATCGGCAGACT
91114918 TGCTACACGTCC
66 TGCTACACGTCC
91114930 GAAGAGAAAATTGGTTTAGGTGAAAGAAGATTGCTTCATTTCACTAAGAGAAACATCGGCAGACT
1 GAAGAGAAAATTGGTTTAGGTGAAAGAAGATTGCTTCATTTCACTAAGAGAAACATCGGCAGACT
91114995 TGCTACACGTCC
66 TGCTACACGTCC
91115007 GAAGAGAAAATTGGTTTAGGTGAAAGAAGATTGCTTCATTTCACTAAGAGAAACATCGGCAGACT
1 GAAGAGAAAATTGGTTTAGGTGAAAGAAGATTGCTTCATTTCACTAAGAGAAACATCGGCAGACT
91115072 TGCTACACGTCC
66 TGCTACACGTCC
*
91115084 GAAGAGAAAATTGGTTTAGGTGAAAGAAGATTGCTTCATTTCACTAAGAGAAACATGGGCAGACT
1 GAAGAGAAAATTGGTTTAGGTGAAAGAAGATTGCTTCATTTCACTAAGAGAAACATCGGCAGACT
91115149 TGCTACACGTCC
66 TGCTACACGTCC
91115161 TTCAACCATG
Statistics
Matches: 230, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 230 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.25
Consensus pattern (77 bp):
GAAGAGAAAATTGGTTTAGGTGAAAGAAGATTGCTTCATTTCACTAAGAGAAACATCGGCAGACT
TGCTACACGTCC
Done.