Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 28 of 279
Found at i:9250245 original size:5 final size:5
Alignment explanation
Indices: 9250235--9250262 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
9250225 TCAGGATTGC
9250235 CCCCA CCCCA CCCCA CCCCA CCCCA CCC
1 CCCCA CCCCA CCCCA CCCCA CCCCA CCC
9250263 ATCTCTGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.82, G:0.00, T:0.00
Consensus pattern (5 bp):
CCCCA
Found at i:9275050 original size:6 final size:6
Alignment explanation
Indices: 9275039--9275068 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
9275029 ATTACATGAA
9275039 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
9275069 TTGTTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
ATGTAT
Found at i:9275563 original size:48 final size:48
Alignment explanation
Indices: 9275420--9275738 Score: 352
Period size: 48 Copynumber: 6.6 Consensus size: 48
9275410 ATGAGAACCC
* * *
9275420 ATGTAAGACCATGTCTGAGACATGGCATCGACGTTGATATGTGAGCTA
1 ATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * ** * * *
9275468 GTGTAAGACTATAGTCTGATACATGGCATCAGCATTAATATGTGAGCCA
1 ATGTAAGACCAT-GTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* *
9275517 ATGTAAGACCATGTCTAGGACATAGCATCGGCGTTGATATGTGAGCCA
1 ATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* *
9275565 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGAGCCA
1 ATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * * *
9275613 GTGTAGGACCATGTCTGGGATATGGCATCTGCGTTGATATGTGAGCCA
1 ATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * * ** * **
9275661 ATGTAAAACCATGTCTGGGACATGGTATCAGCACTGATATGAGATTTC-
1 ATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGA-GCCA
* * *
9275709 ATATAAGACCATATCTGGGATATGGCATCG
1 ATGTAAGACCATGTCTGGGACATGGCATCG
9275739 ATATGTGGAT
Statistics
Matches: 227, Mismatches: 42, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
48 186 0.82
49 41 0.18
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (48 bp):
ATGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
Found at i:9275699 original size:144 final size:145
Alignment explanation
Indices: 9275418--9275739 Score: 396
Period size: 144 Copynumber: 2.2 Consensus size: 145
9275408 TAATGAGAAC
* * *
9275418 CCATGTAAGACCATGTCTGAGACATGGCATCGACGTTGATATGTGAGCTAGTGTAAGACTATAGT
1 CCATGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGAGCCAGTGTAAGACCATAGT
* * *
9275483 CTGATACATGGCATCAGCATTAATATGTGAGCCAATGTAAGACCATGTCTAGGACATAGCATCGG
66 CTGAGACATGGCATCAGCATTAATATGTGAGCCAATGTAAAACCATGTCTAGGACATAGCATCAG
** *
9275548 CGTTGATATGTGA-G
131 CACTGATATGAGATG
** *
9275562 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGAGCCAGTGTAGGACCAT-G
1 CCA-TGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGAGCCAGTGTAAGACCATAG
* * * * * * * *
9275626 TCTGGGATATGGCATCTGCGTTGATATGTGAGCCAATGTAAAACCATGTCTGGGACATGGTATCA
65 TCTGAGACATGGCATCAGCATTAATATGTGAGCCAATGTAAAACCATGTCTAGGACATAGCATCA
*
9275691 GCACTGATATGAGATT
130 GCACTGATATGAGATG
* * * *
9275707 TCATATAAGACCATATCTGGGATATGGCATCGA
1 CCATGTAAGACCATGTCTGGGACATGGCATCGA
9275740 TATGTGGATC
Statistics
Matches: 150, Mismatches: 26, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
144 95 0.63
145 55 0.37
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (145 bp):
CCATGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGAGCCAGTGTAAGACCATAGT
CTGAGACATGGCATCAGCATTAATATGTGAGCCAATGTAAAACCATGTCTAGGACATAGCATCAG
CACTGATATGAGATG
Found at i:9279148 original size:50 final size:50
Alignment explanation
Indices: 9279029--9279160 Score: 149
Period size: 52 Copynumber: 2.6 Consensus size: 50
9279019 ATTGTGAGAA
* * *
9279029 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTCAAGACGCTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAGA--CTTTTAGGT
* * *
9279081 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGA-TTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAGACTT-TTAGGT
** *
9279131 TGCATGTGTAGTACTAAGTCCAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
9279161 TGCGTACCTG
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
49 2 0.03
50 31 0.46
52 35 0.51
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAGACTTTTAGGT
Found at i:9279168 original size:50 final size:50
Alignment explanation
Indices: 9279029--9279168 Score: 156
Period size: 50 Copynumber: 2.8 Consensus size: 50
9279019 ATTGTGAGAA
* * *
9279029 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTCAAGACGCTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA--CTTTTAGGT
* * *
9279081 CACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGA-TTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTT-TTAGGT
** * *
9279131 TGCATGTGTAGTACTAAGTCCAGGCTACTATGCGTACC
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
9279169 TGATAGCTTC
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
49 2 0.03
50 37 0.50
52 35 0.47
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTTTTAGGT
Found at i:9279237 original size:74 final size:74
Alignment explanation
Indices: 9279116--9279263 Score: 251
Period size: 74 Copynumber: 2.0 Consensus size: 74
9279106 TACTACGTGT
* *
9279116 ACCAGATTGTTAGGTTGCATGTGTAGTACTAAGTCCAGGCTACTATGCGTACCTGATAGCTTCGA
1 ACCAGATTGTTAGGTTGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCGATAGCTTCGA
9279181 TCACATGTG
66 TCACATGTG
* *
9279190 ACCAGATTGTTGGGTTGCATGTGTAGTGCTAAGTACAGGCTACTATGCGTACCCGATAGCTTCGA
1 ACCAGATTGTTAGGTTGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCGATAGCTTCGA
*
9279255 TCACGTGTG
66 TCACATGTG
9279264 TAGTACTAAG
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30
Consensus pattern (74 bp):
ACCAGATTGTTAGGTTGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCGATAGCTTCGA
TCACATGTG
Found at i:9281485 original size:21 final size:21
Alignment explanation
Indices: 9281461--9281504 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
9281451 ATCTTCTCGA
9281461 TTTAG-TCTATTTTTGTCCCTT
1 TTTAGCTC-ATTTTTGTCCCTT
* *
9281482 TTTAGCTCGTTTTTGTCTCTT
1 TTTAGCTCATTTTTGTCCCTT
9281503 TT
1 TT
9281505 CGACTCTTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.07, C:0.18, G:0.11, T:0.64
Consensus pattern (21 bp):
TTTAGCTCATTTTTGTCCCTT
Found at i:9291355 original size:38 final size:38
Alignment explanation
Indices: 9291290--9291392 Score: 116
Period size: 38 Copynumber: 2.7 Consensus size: 38
9291280 GGCTTAAAGA
* ** * *
9291290 CCCGCAGGCTTCATGCTGGTAAAATATCCGAGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCAGAGATAAAT
* *
9291328 CCCGCAGGCTTCGTACTGGTATTATATCAGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCAGAGATAAAT
* * *
9291366 CCTGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
9291393 TCGGGCCTTC
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCAGAGATAAAT
Found at i:9291467 original size:43 final size:43
Alignment explanation
Indices: 9291390--9291471 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
9291380 GCTGGTATTA
* **
9291390 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
9291433 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
9291472 AATGATATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.12, C:0.26, G:0.34, T:0.28
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
Found at i:9292404 original size:15 final size:15
Alignment explanation
Indices: 9292386--9292424 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
9292376 TTTCTTGTTT
*
9292386 TGGATTTCTTTATGA
1 TGGATTTCTATATGA
**
9292401 TGGATTTCTATATTT
1 TGGATTTCTATATGA
9292416 TGGATTTCT
1 TGGATTTCT
9292425 CCGTTATGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.18, C:0.08, G:0.18, T:0.56
Consensus pattern (15 bp):
TGGATTTCTATATGA
Found at i:9293520 original size:352 final size:352
Alignment explanation
Indices: 9292876--9293579 Score: 1246
Period size: 352 Copynumber: 2.0 Consensus size: 352
9292866 AAATGACTTG
*
9292876 GGTATTAAAAGATGATAAGATGGTTATTGTATGATCCTTGTGTAAAAATATTTTGAAATGTTAAT
1 GGTATTAAAAGATGAAAAGATGGTTATTGTATGATCCTTGTGTAAAAATATTTTGAAATGTTAAT
* *
9292941 GGGGTTAAAGCCGAGCATCAGGTTCTATCAGAGTTATCTCTGCCAGTATTGACATTAGGATGGAA
66 GGGGTTAAAGCCGAGCATCAGGTTCTACCAGAGTTATCTCTACCAGTATTGACATTAGGATGGAA
* *
9293006 AATGAGAAAGGATTATCCTCAAGGCCCTATCAGGATCATCCCTGTCTTTGAAAGAGAAAAATGTA
131 AATGAGAAAGAATTATCCTCAAGGCCCTATCAGGATCATCCCTGTATTTGAAAGAGAAAAATGTA
*
9293071 ATGTAGCTTATTGTTAAATATTTGACGAGATATGTAAATCATGCTGGTATGTACTGAATTTTTGC
196 ATGTAGCTTATTGCTAAATATTTGACGAGATATGTAAATCATGCTGGTATGTACTGAATTTTTGC
* *
9293136 TCATCAGGTTCGAGGAATTTCGTGTCTTTATGAATGTTGGACATCTTGAGATCCTAGTCTCCAGT
261 TCATCAGGTTCGAGGAATTTCGTGTCTTTATGAATGTTGGACACCTTGAGATCCTAGTCTCCACT
* **
9293201 AATTGGATTGAGATCTGGGTTTCATAT
326 AATCGGATTGAGATCCAGGTTTCATAT
* *
9293228 GGTATTAAAAGATGAAAATATGGTTATTGTATGATTCTTGTGTAAAAATATTTTGAAATGTTAAT
1 GGTATTAAAAGATGAAAAGATGGTTATTGTATGATCCTTGTGTAAAAATATTTTGAAATGTTAAT
* *
9293293 GGGGTTAAAGCTGAGCATCAGGTTCTACCAGAGTTATCTCTACTAGTATTGACATTAGGATGGAA
66 GGGGTTAAAGCCGAGCATCAGGTTCTACCAGAGTTATCTCTACCAGTATTGACATTAGGATGGAA
* *
9293358 AATGAGAAAGAATTATCCTCAAGGCCCTATCAGGATCATCCCTTTATTTGAAAGAGAAAAATGTC
131 AATGAGAAAGAATTATCCTCAAGGCCCTATCAGGATCATCCCTGTATTTGAAAGAGAAAAATGTA
9293423 ATGTAGCTTATTGCTAAATATTTGACGAGATATGTAAATCATGCTGGTATGTACTGAATTTTTGC
196 ATGTAGCTTATTGCTAAATATTTGACGAGATATGTAAATCATGCTGGTATGTACTGAATTTTTGC
*
9293488 TCATTAGGTTCGAGGAATTTCGTGTCTTTATGAATGTTGGACACCTTGAGATCCTAGTCTCCACT
261 TCATCAGGTTCGAGGAATTTCGTGTCTTTATGAATGTTGGACACCTTGAGATCCTAGTCTCCACT
9293553 AATCGGATTGAGATCCAGGTTTCATAT
326 AATCGGATTGAGATCCAGGTTTCATAT
9293580 CATGATTGCT
Statistics
Matches: 334, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
352 334 1.00
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.35
Consensus pattern (352 bp):
GGTATTAAAAGATGAAAAGATGGTTATTGTATGATCCTTGTGTAAAAATATTTTGAAATGTTAAT
GGGGTTAAAGCCGAGCATCAGGTTCTACCAGAGTTATCTCTACCAGTATTGACATTAGGATGGAA
AATGAGAAAGAATTATCCTCAAGGCCCTATCAGGATCATCCCTGTATTTGAAAGAGAAAAATGTA
ATGTAGCTTATTGCTAAATATTTGACGAGATATGTAAATCATGCTGGTATGTACTGAATTTTTGC
TCATCAGGTTCGAGGAATTTCGTGTCTTTATGAATGTTGGACACCTTGAGATCCTAGTCTCCACT
AATCGGATTGAGATCCAGGTTTCATAT
Found at i:9296784 original size:773 final size:773
Alignment explanation
Indices: 9295299--9296845 Score: 3094
Period size: 773 Copynumber: 2.0 Consensus size: 773
9295289 TCACCTGTAC
9295299 ATTACTCATGGCCGATTGAATATATATATTAACAAACTATCATTAAATTTTCAAACCAAAATATC
1 ATTACTCATGGCCGATTGAATATATATATTAACAAACTATCATTAAATTTTCAAACCAAAATATC
9295364 TTTATCATAACTAGTTCATAAACTCTTATATGCATAAATTCATAGGTCAAAGGATAATAATCACA
66 TTTATCATAACTAGTTCATAAACTCTTATATGCATAAATTCATAGGTCAAAGGATAATAATCACA
9295429 TACATATTTATATTATATGGCCGAGTACACACATATATATATGCAAAATATCCTTCAATTTCAAA
131 TACATATTTATATTATATGGCCGAGTACACACATATATATATGCAAAATATCCTTCAATTTCAAA
9295494 GCTAAATATCATTACGTGAACACATATACTTATACTCATGAATCAAAATACAACTTTTTATGCAT
196 GCTAAATATCATTACGTGAACACATATACTTATACTCATGAATCAAAATACAACTTTTTATGCAT
9295559 AAGCATAGAAATGACCGAATGAACACTTTCATATATAAAGGTACATTAACAAACTTTCATTCAAT
261 AAGCATAGAAATGACCGAATGAACACTTTCATATATAAAGGTACATTAACAAACTTTCATTCAAT
9295624 GATTAAGCCAAAACATCTTTATCATACCAAATATACATACACTTTTATGCATATACTTGTAAGTC
326 GATTAAGCCAAAACATCTTTATCATACCAAATATACATACACTTTTATGCATATACTTGTAAGTC
9295689 AAAGTATATCAATCATATATATATTTATCAATGGCTGAATATACCACCATTTGCATATATTCACA
391 AAAGTATATCAATCATATATATATTTATCAATGGCTGAATATACCACCATTTGCATATATTCACA
9295754 AATAATTTCAATAATGTTCATATTATTTATTTACAAGGCCGAATACCTTTTTCACATTCACACAT
456 AATAATTTCAATAATGTTCATATTATTTATTTACAAGGCCGAATACCTTTTTCACATTCACACAT
9295819 ATATTCTTACTTTACTTCAAGCATATTTTGCAACAAATATTAAGTAACTTACTCACTTTGTTTCA
521 ATATTCTTACTTTACTTCAAGCATATTTTGCAACAAATATTAAGTAACTTACTCACTTTGTTTCA
9295884 AATAGGTAATAAACCATTTCATACCTGATCATTTTAGCTCACTTTTGCACATTTTATCACAACTG
586 AATAGGTAATAAACCATTTCATACCTGATCATTTTAGCTCACTTTTGCACATTTTATCACAACTG
9295949 ATCGATGCCCATTGAACCATTTGAAATTGGATAGGTCACTCGGATAATTACACATATATCGTACA
651 ATCGATGCCCATTGAACCATTTGAAATTGGATAGGTCACTCGGATAATTACACATATATCGTACA
9296014 ATACCAACGTCCTAGACGTGGTCTTACATGTAACCACATATCGATGCCACTGTCCCAG
716 ATACCAACGTCCTAGACGTGGTCTTACATGTAACCACATATCGATGCCACTGTCCCAG
9296072 ATTACTCATGGCCGATTGAATATATATATTAACAAACTATCATTAAATTTTCAAACCAAAATATC
1 ATTACTCATGGCCGATTGAATATATATATTAACAAACTATCATTAAATTTTCAAACCAAAATATC
9296137 TTTATCATAACTAGTTCATAAACTCTTATATGCATAAATTCATAGGTCAAAGGATAATAATCACA
66 TTTATCATAACTAGTTCATAAACTCTTATATGCATAAATTCATAGGTCAAAGGATAATAATCACA
9296202 TACATATTTATATTATATGGCCGAGTACACACATATATATATGCAAAATATCCTTCAATTTCAAA
131 TACATATTTATATTATATGGCCGAGTACACACATATATATATGCAAAATATCCTTCAATTTCAAA
9296267 GCTAAATATCATTACGTGAACACATATACTTATACTCATGAATCAAAATACAACTTTTTATGCAT
196 GCTAAATATCATTACGTGAACACATATACTTATACTCATGAATCAAAATACAACTTTTTATGCAT
9296332 AAGCATAGAAATGACCGAATGAACACTTTCATATATAAAGGTACATTAACAAACTTTCATTCAAT
261 AAGCATAGAAATGACCGAATGAACACTTTCATATATAAAGGTACATTAACAAACTTTCATTCAAT
9296397 GATTAAGCCAAAACATCTTTATCATACCAAATATACATACACTTTTATGCATATACTTGTAAGTC
326 GATTAAGCCAAAACATCTTTATCATACCAAATATACATACACTTTTATGCATATACTTGTAAGTC
9296462 AAAGTATATCAATCATATATATATTTATCAATGGCTGAATATACCACCATTTGCATATATTCACA
391 AAAGTATATCAATCATATATATATTTATCAATGGCTGAATATACCACCATTTGCATATATTCACA
9296527 AATAATTTCAATAATGTTCATATTATTTATTTACAAGGCCGAATACCTTTTTCACATTCACACAT
456 AATAATTTCAATAATGTTCATATTATTTATTTACAAGGCCGAATACCTTTTTCACATTCACACAT
9296592 ATATTCTTACTTTACTTCAAGCATATTTTGCAACAAATATTAAGTAACTTACTCACTTTGTTTCA
521 ATATTCTTACTTTACTTCAAGCATATTTTGCAACAAATATTAAGTAACTTACTCACTTTGTTTCA
9296657 AATAGGTAATAAACCATTTCATACCTGATCATTTTAGCTCACTTTTGCACATTTTATCACAACTG
586 AATAGGTAATAAACCATTTCATACCTGATCATTTTAGCTCACTTTTGCACATTTTATCACAACTG
9296722 ATCGATGCCCATTGAACCATTTGAAATTGGATAGGTCACTCGGATAATTACACATATATCGTACA
651 ATCGATGCCCATTGAACCATTTGAAATTGGATAGGTCACTCGGATAATTACACATATATCGTACA
9296787 ATACCAACGTCCTAGACGTGGTCTTACATGTAACCACATATCGATGCCACTGTCCCAG
716 ATACCAACGTCCTAGACGTGGTCTTACATGTAACCACATATCGATGCCACTGTCCCAG
9296845 A
1 A
9296846 CAGGGTCTTA
Statistics
Matches: 774, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
773 774 1.00
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (773 bp):
ATTACTCATGGCCGATTGAATATATATATTAACAAACTATCATTAAATTTTCAAACCAAAATATC
TTTATCATAACTAGTTCATAAACTCTTATATGCATAAATTCATAGGTCAAAGGATAATAATCACA
TACATATTTATATTATATGGCCGAGTACACACATATATATATGCAAAATATCCTTCAATTTCAAA
GCTAAATATCATTACGTGAACACATATACTTATACTCATGAATCAAAATACAACTTTTTATGCAT
AAGCATAGAAATGACCGAATGAACACTTTCATATATAAAGGTACATTAACAAACTTTCATTCAAT
GATTAAGCCAAAACATCTTTATCATACCAAATATACATACACTTTTATGCATATACTTGTAAGTC
AAAGTATATCAATCATATATATATTTATCAATGGCTGAATATACCACCATTTGCATATATTCACA
AATAATTTCAATAATGTTCATATTATTTATTTACAAGGCCGAATACCTTTTTCACATTCACACAT
ATATTCTTACTTTACTTCAAGCATATTTTGCAACAAATATTAAGTAACTTACTCACTTTGTTTCA
AATAGGTAATAAACCATTTCATACCTGATCATTTTAGCTCACTTTTGCACATTTTATCACAACTG
ATCGATGCCCATTGAACCATTTGAAATTGGATAGGTCACTCGGATAATTACACATATATCGTACA
ATACCAACGTCCTAGACGTGGTCTTACATGTAACCACATATCGATGCCACTGTCCCAG
Found at i:9298048 original size:9 final size:9
Alignment explanation
Indices: 9298034--9298061 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
9298024 ACCCCTGACA
9298034 TTTACAATT
1 TTTACAATT
9298043 TTTACAATT
1 TTTACAATT
9298052 TTTACAATT
1 TTTACAATT
9298061 T
1 T
9298062 AGTCTCTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (9 bp):
TTTACAATT
Found at i:9300899 original size:50 final size:50
Alignment explanation
Indices: 9300828--9301064 Score: 321
Period size: 50 Copynumber: 4.7 Consensus size: 50
9300818 TAAGACGGTT
9300828 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTG
* * * * * * *
9300878 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTG
* * * * *
9300928 CTTTGATCACGCGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTG
* *
9300979 TTAGGTCACGGGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTA
1 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTG
* *
9301029 TTAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTA
1 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTA
9301065 TGCATACCAG
Statistics
Matches: 159, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
50 120 0.75
51 39 0.25
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTG
Found at i:9300962 original size:101 final size:100
Alignment explanation
Indices: 9300828--9301064 Score: 314
Period size: 101 Copynumber: 2.4 Consensus size: 100
9300818 TAAGACGGTT
* * * *
9300828 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGTTAGGTCACAGGTGT
* *
9300893 AGTACTAAGTGCAGGCTACTATGCGTACCCGA-TA
66 AGTACTAAGTGCAGGCTACTACGCGTACCAGATTA
* * * *
9300927 GCTTTGATCACGCGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGGGT
1 --TTAGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGTTAGGTCACAGGT
* *
9300992 GTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTA
64 GTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTA
* * *
9301029 TTAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTA
1 TTAGATCACGTGTGTAGTACTAAGTGTAGGCTACTA
9301065 TGCATACCAG
Statistics
Matches: 118, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
100 31 0.26
101 85 0.72
102 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (100 bp):
TTAGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATGGTTAGGTCACAGGTGT
AGTACTAAGTGCAGGCTACTACGCGTACCAGATTA
Found at i:9301110 original size:151 final size:151
Alignment explanation
Indices: 9300828--9301110 Score: 422
Period size: 151 Copynumber: 1.9 Consensus size: 151
9300818 TAAGACGGTT
* *
9300828 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACGGGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTATTAGGTCGCATGTGT
* * * ** ** * * *
9300893 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTTGATCACGCGTGTAGTACTAAGTGTAG
66 AGTACTAAGTGCAGGCTACTATGCATACCAGAGAGCTTCAATCACAAGGGTAGTAATAAGTATAG
9300958 GCTACTACGTGTATCAGATGG
131 GCTACTACGTGTATCAGATGG
9300979 TTAGGTCACGGGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTATTAGGTCGCATGTGT
1 TTAGGTCACGGGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTATTAGGTCGCATGTGT
* * * *
9301044 AGTACTAAGTGTAGGCTACTATGCATACCAGAGAGCTTCAATTACAAGGGTGGTAATATGTATAG
66 AGTACTAAGTGCAGGCTACTATGCATACCAGAGAGCTTCAATCACAAGGGTAGTAATAAGTATAG
9301109 GC
131 GC
9301111 CATCGAGTAT
Statistics
Matches: 116, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
151 116 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (151 bp):
TTAGGTCACGGGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTATTAGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTATGCATACCAGAGAGCTTCAATCACAAGGGTAGTAATAAGTATAG
GCTACTACGTGTATCAGATGG
Found at i:9311323 original size:48 final size:48
Alignment explanation
Indices: 9311241--9311333 Score: 134
Period size: 48 Copynumber: 1.9 Consensus size: 48
9311231 TTAGAGGATA
* * *
9311241 CATTGATTTGGCTTCGGGCCATGATATCGACACTTCGGGTGCGAGCTT
1 CATTGATTTGGCTTCAGGCCATGATATAGACACTTAGGGTGCGAGCTT
*
9311289 CATTGATTTGGCTTCAGGCCATGATATTAG-CACTTAGTGTGCGAG
1 CATTGATTTGGCTTCAGGCCATGATA-TAGACACTTAGGGTGCGAG
9311334 ACTCCTGAGT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
48 38 0.95
49 2 0.05
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.32
Consensus pattern (48 bp):
CATTGATTTGGCTTCAGGCCATGATATAGACACTTAGGGTGCGAGCTT
Found at i:9325162 original size:25 final size:25
Alignment explanation
Indices: 9325134--9325191 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
9325124 TAGCTTGTGA
*
9325134 GAGCATACCGA-TCTTCAGCTCAAAT
1 GAGCATACCGACTC-ACAGCTCAAAT
*
9325159 GAGCATACCGACTCACAGCTCGAAT
1 GAGCATACCGACTCACAGCTCAAAT
9325184 GAGCATAC
1 GAGCATAC
9325192 ATGTACATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 28 0.93
26 2 0.07
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.19
Consensus pattern (25 bp):
GAGCATACCGACTCACAGCTCAAAT
Found at i:9327201 original size:3 final size:3
Alignment explanation
Indices: 9327193--9327221 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
9327183 AATTTGGATG
9327193 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
9327222 TAGTATGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9331300 original size:40 final size:40
Alignment explanation
Indices: 9331023--9331286 Score: 349
Period size: 40 Copynumber: 6.6 Consensus size: 40
9331013 CGAATGATGT
* * * *
9331023 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
9331063 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
9331103 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
9331141 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
9331182 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
9331222 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
9331262 CCGGGCTATGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
9331287 AACGAGTAGC
Statistics
Matches: 201, Mismatches: 16, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
39 33 0.16
40 158 0.79
41 10 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:9331317 original size:159 final size:159
Alignment explanation
Indices: 9331023--9331319 Score: 379
Period size: 159 Copynumber: 1.9 Consensus size: 159
9331013 CGAATGATGT
*
9331023 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTG
* * ** *
9331088 TGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGAGTTAAGT
66 TGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAATCCGAGTTAAAT
9331153 CCCGAAGGCATTTGTGCGAGTTACTATAA
131 CCCGAAGGCATTTGTGCGAGTTACTATAA
* * * *
9331182 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATT
* * * *
9331245 TGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGCTATATCCG-GT
64 TGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-CTAAATCCGAGT
*
9331307 TAAATTCCGAAGG
126 TAAATCCCGAAGG
9331320 TACGTGATTT
Statistics
Matches: 118, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
158 3 0.03
159 84 0.71
160 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (159 bp):
CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTG
TGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAATCCGAGTTAAAT
CCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:9332354 original size:20 final size:20
Alignment explanation
Indices: 9332311--9332355 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
9332301 ACTATTTTGT
9332311 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
9332331 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
9332350 TATGGG
1 TATGGG
9332356 AAAGGCCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:9335981 original size:27 final size:27
Alignment explanation
Indices: 9335915--9336003 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
9335905 ATCGATACAC
* * * *
9335915 AGCCATGGGTAAATATGATCGACACAG
1 AGCCATAGGTAAATATGATAGGCACAA
* * *
9335942 AGTCATCA-ATAAATATGATAGGCACAT
1 AGCCAT-AGGTAAATATGATAGGCACAA
** *
9335969 AGCCATAGGTAAATACAATTGGCACAA
1 AGCCATAGGTAAATATGATAGGCACAA
9335996 AGCCATAG
1 AGCCATAG
9336004 TCAAGATAGC
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
26 1 0.02
27 47 0.98
ACGTcount: A:0.42, C:0.18, G:0.20, T:0.20
Consensus pattern (27 bp):
AGCCATAGGTAAATATGATAGGCACAA
Found at i:9336441 original size:27 final size:26
Alignment explanation
Indices: 9336409--9336839 Score: 368
Period size: 27 Copynumber: 16.0 Consensus size: 26
9336399 TTTACCCTAC
* * *
9336409 AGGGGTATTTTGGTAATTTTACACTAT
1 AGGGGTATTTCGATAATTTTACA-AAT
* *
9336436 AAGGGTATTTCGATAATTTTACACTAT
1 AGGGGTATTTCGATAATTTTACA-AAT
9336463 AGGGGTATTTCGATAATTTTACAAAT
1 AGGGGTATTTCGATAATTTTACAAAT
*
9336489 CGGGGGTATTTCGATAATTTTACAAACT
1 -AGGGGTATTTCGATAATTTTACAAA-T
* **
9336517 GGGGGTATTTTAATAATTTTACAAAT
1 AGGGGTATTTCGATAATTTTACAAAT
* *
9336543 CGGAGGTATTTCAATAATTTTACAAACT
1 AGG-GGTATTTCGATAATTTTACAAA-T
* * *
9336571 -GAGGGTATTTCAATAATTTTATAATT
1 AG-GGGTATTTCGATAATTTTACAAAT
*
9336597 CGAGGGTATTTC-AGTAATTTTACAAACT
1 AG-GGGTATTTCGA-TAATTTTACAAA-T
* * *
9336625 AGGGGAATTTTGGTAATTTTACAAAT
1 AGGGGTATTTCGATAATTTTACAAAT
*
9336651 CAAGGGGTATTTCGGTAATTTTACAAACT
1 --AGGGGTATTTCGATAATTTTACAAA-T
* *
9336680 -GGGTGTATTTTGGTAATTTTACAAACT
1 AGGG-GTATTTCGATAATTTTACAAA-T
* *
9336707 AGGGGTATTTTGGTAATTTTACAAAT
1 AGGGGTATTTCGATAATTTTACAAAT
*
9336733 CAGGGGTATTTTGATAATTTTACAAACT
1 -AGGGGTATTTCGATAATTTTACAAA-T
*
9336761 -GAGGGTATTTCGGTAATTTTACAAAT
1 AG-GGGTATTTCGATAATTTTACAAAT
* * *
9336787 TGAAGGTATTTCGATAATTTTACAAAC
1 AG-GGGTATTTCGATAATTTTACAAAT
* *
9336814 CGAAGGTATTTC-AGTAATTTTACAAA
1 AG-GGGTATTTCGA-TAATTTTACAAA
9336840 CCGAGGTCTT
Statistics
Matches: 357, Mismatches: 28, Indels: 38
0.84 0.07 0.09
Matches are distributed among these distances:
26 15 0.04
27 309 0.87
28 32 0.09
29 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (26 bp):
AGGGGTATTTCGATAATTTTACAAAT
Found at i:9336533 original size:81 final size:80
Alignment explanation
Indices: 9336410--9336845 Score: 441
Period size: 81 Copynumber: 5.4 Consensus size: 80
9336400 TTACCCTACA
* * * * * *
9336410 GGGGTATTTTGGTAATTTTACACTA-TAAGGGTATTTCGATAATTTTACACTATAGGGGTATTTC
1 GGGGTATTTCGATAATTTTACA-AACTGAGGGTATTTCGGTAATTTTACA-AATAGGGGTATTTC
9336474 GATAATTTTACAAATCG
64 GATAATTTTACAAATCG
* *** * *
9336491 GGGGTATTTCGATAATTTTACAAACTGGGGGTATTTTAATAATTTTACAAATCGGAGGTATTTCA
1 GGGGTATTTCGATAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATAGG-GGTATTTCG
9336556 ATAATTTTACAAA-CTG
65 ATAATTTTACAAATC-G
* * * * * * *
9336572 AGGGTATTTCAATAATTTTA-TAATTCGAGGGTATTTCAGTAATTTTACAAACTAGGGGAATTTT
1 GGGGTATTTCGATAATTTTACAAACT-GAGGGTATTTCGGTAATTTTACAAA-TAGGGGTATTTC
* *
9336636 GGTAATTTTACAAATCAA
64 GATAATTTTACAAATC-G
* * *
9336654 GGGGTATTTCGGTAATTTTACAAACTG-GGTGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
1 GGGGTATTTCGATAATTTTACAAACTGAGG-GTATTTCGGTAATTTTACAAA-TAGGGGTATTTC
* *
9336718 GGTAATTTTACAAATCA
64 GATAATTTTACAAATCG
* * *
9336735 GGGGTATTTTGATAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATTGAAGGTATTTCG
1 GGGGTATTTCGATAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATAG-GGGTATTTCG
*
9336800 ATAATTTTACAAACCG
65 ATAATTTTACAAATCG
** *
9336816 AAGGTATTTC-AGTAATTTTACAAACCGAGG
1 GGGGTATTTCGA-TAATTTTACAAACTGAGG
9336846 TCTTAACGAC
Statistics
Matches: 299, Mismatches: 45, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
80 12 0.04
81 213 0.71
82 71 0.24
83 3 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (80 bp):
GGGGTATTTCGATAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATAGGGGTATTTCGA
TAATTTTACAAATCG
Found at i:9342041 original size:40 final size:39
Alignment explanation
Indices: 9341983--9342059 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 39
9341973 TCTTCGGGAT
9341983 TTAGCCGGATATAACAACTCGCACAAATGCCCTCGGGTC
1 TTAGCCGGATATAACAACTCGCACAAATGCCCTCGGGTC
* *
9342022 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGG
1 TTAG-CCGGATATAACAACTCGCACAAATGCCCTCGGG
9342060 NNNNNNNNNN
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (39 bp):
TTAGCCGGATATAACAACTCGCACAAATGCCCTCGGGTC
Found at i:9348020 original size:40 final size:40
Alignment explanation
Indices: 9347966--9348550 Score: 1046
Period size: 40 Copynumber: 14.6 Consensus size: 40
9347956 NNNNNNNNNG
*
9347966 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
9348006 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
9348046 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
9348086 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
9348126 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
9348166 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
9348206 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
9348246 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
9348286 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
9348326 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
9348366 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
9348406 ATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
9348446 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * *
9348486 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
9348526 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
9348551 ATTGAGCTTG
Statistics
Matches: 527, Mismatches: 16, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
39 2 0.00
40 524 0.99
41 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:9349887 original size:22 final size:23
Alignment explanation
Indices: 9349855--9349900 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
9349845 ATCACCCCTC
9349855 CCTTTTCATTTCT-TTATTACTAA
1 CCTTTTCATTT-TATTATTACTAA
*
9349878 CCTTTT-ATTTTATTATTTCTAA
1 CCTTTTCATTTTATTATTACTAA
9349900 C
1 C
9349901 ATAAAACACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 1 0.05
22 14 0.67
23 6 0.29
ACGTcount: A:0.22, C:0.20, G:0.00, T:0.59
Consensus pattern (23 bp):
CCTTTTCATTTTATTATTACTAA
Found at i:9350590 original size:110 final size:110
Alignment explanation
Indices: 9350397--9350616 Score: 440
Period size: 110 Copynumber: 2.0 Consensus size: 110
9350387 TGTGACTATT
9350397 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGAGCAA
1 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGAGCAA
9350462 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
66 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
9350507 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGAGCAA
1 ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGAGCAA
9350572 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
66 AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
9350617 TGCTTGTGTT
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
110 110 1.00
ACGTcount: A:0.46, C:0.08, G:0.22, T:0.24
Consensus pattern (110 bp):
ATAGAATTAAAGTTGAGTAAGTAATTAAACAAATTCATTTGTTTAAATTTAAAGCTCAAGAGCAA
AGAGGAACTAAATCAGATAGGGGAAAGGAGAAAGCAATCGAGTAG
Found at i:9350770 original size:39 final size:39
Alignment explanation
Indices: 9350727--9350943 Score: 312
Period size: 39 Copynumber: 5.5 Consensus size: 39
9350717 GTGTGAGATA
* *
9350727 TATATCCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
9350766 TATATCCGGGCTAAGTCCCGGAGGCATTCGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
9350805 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
9350844 TATATCCGGGTTAAG-CCTCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCC-CGAAGGCATTCGTGCTGGTGT
* * *
9350883 TATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTGT
9350922 TATATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
9350944 CATGCTTTGT
Statistics
Matches: 163, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
38 2 0.01
39 140 0.86
40 19 0.12
41 2 0.01
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.30
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:9350824 original size:78 final size:78
Alignment explanation
Indices: 9350694--9350943 Score: 321
Period size: 78 Copynumber: 3.2 Consensus size: 78
9350684 AGGATTTTAA
* * * *
9350694 CCGGGCTAAGACCCGCAGGCCTT-GTG-TGAG-ATATATATCCGGGCTAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTG-GTAT-TATATCCGGGCTAAGTCCCGAAGGCATTT
9350756 GTGCTGGTGTTATAT
64 GTGCTGGTGTTATAT
* *
9350771 CCGGGCTAAGTCCCGGAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTTGT
9350836 GCTGGTGTTATAT
66 GCTGGTGTTATAT
* * *
9350849 CCGGGTTAAG-CCTCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTT
1 CCGGGCTAAGTCC-CGAAGGCATTCGTGCTGGTATTATATCCGGGCT-AAGTCCCGAAGGCATTT
*
9350912 GTGCTGGTATTATAT
64 GTGCTGGTGTTATAT
9350927 CCGGGCTTAAAGTCCCG
1 CCGGGC-T-AAGTCCCG
9350944 CATGCTTTGT
Statistics
Matches: 153, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
77 22 0.14
78 107 0.70
79 17 0.11
80 5 0.03
81 2 0.01
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCTGGTGTTATAT
Found at i:9353958 original size:25 final size:25
Alignment explanation
Indices: 9353911--9353966 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
9353901 ATGTACATGT
*
9353911 ATGCTCATATGAGCTGTGAATCGGC
1 ATGCTCATATGAGCTGAGAATCGGC
* *
9353936 ATGCTCATTTGAGCTGA-AGATCGGT
1 ATGCTCATATGAGCTGAGA-ATCGGC
9353961 ATGCTC
1 ATGCTC
9353967 TCACGAGCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (25 bp):
ATGCTCATATGAGCTGAGAATCGGC
Found at i:9353974 original size:25 final size:25
Alignment explanation
Indices: 9353959--9354007 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
9353949 CTGAAGATCG
9353959 GTATGCTCTCACGAGCTATAAATCA
1 GTATGCTCTCACGAGCTATAAATCA
9353984 GTATGCTCTCACGAGCTATAAATC
1 GTATGCTCTCACGAGCTATAAATC
9354008 GGTAACCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTATAAATCA
Found at i:9358518 original size:25 final size:24
Alignment explanation
Indices: 9358463--9358534 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 24
9358453 GCTTTATCAT
** *
9358463 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCCTTTTTTA
*
9358488 ATAACTGGGGCAAAGCCTTTTTTG
1 ATAACTGGGGCAAAGCCTTTTTTA
*
9358512 ATAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGGGGCAAAGCCTTTTT
9358535 CGCACTTCCT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
24 14 0.34
25 27 0.66
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCTTTTTTA
Found at i:9358787 original size:27 final size:27
Alignment explanation
Indices: 9358740--9358873 Score: 151
Period size: 27 Copynumber: 4.9 Consensus size: 27
9358730 AGGCAAAATG
* * * *
9358740 GTAATTTTACCCCAGAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
9358767 GTAATTCTACCCTACAGGGGTATTTTCG
1 GTAATTCTACCCTACAAGGGTA-TTTCA
* * *
9358795 GTATTTCTACCATACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
9358822 GTAACTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
9358849 ATAATTCTACCCTACAAGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTT
9358874 TGGTAATTTT
Statistics
Matches: 89, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 67 0.75
28 22 0.25
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:9358831 original size:55 final size:54
Alignment explanation
Indices: 9358755--9358879 Score: 169
Period size: 54 Copynumber: 2.3 Consensus size: 54
9358745 TTTACCCCAG
* * * ** *
9358755 AAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTTCGGTATTTCTACCATAC
1 AAGGGTATTTCGGTAACTCTACCCTACAGGGGTA-TTTCAATAATTCTACCATAC
*
9358810 AAGGGTATTTCGGTAACTCTACCCTACAGGGGTATTTCAATAATTCTACCCTAC
1 AAGGGTATTTCGGTAACTCTACCCTACAGGGGTATTTCAATAATTCTACCATAC
*
9358864 AAGGGTATTTTGGTAA
1 AAGGGTATTTCGGTAA
9358880 TTTTACAAAC
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
54 31 0.50
55 31 0.50
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (54 bp):
AAGGGTATTTCGGTAACTCTACCCTACAGGGGTATTTCAATAATTCTACCATAC
Found at i:9358880 original size:27 final size:27
Alignment explanation
Indices: 9358738--9358908 Score: 146
Period size: 27 Copynumber: 6.3 Consensus size: 27
9358728 AGAGGCAAAA
* * * *
9358738 TGGTAATTTTACCCCAGAAGGGTATCT
1 TGGTAATTCTACCCTACAAGGGTATTT
** *
9358765 CAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* *
9358792 TCGGTATTTCTACCATACAAGGGTATTT
1 T-GGTAATTCTACCCTACAAGGGTATTT
* * *
9358820 CGGTAACTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
***
9358847 CAATAATTCTACCCTACAAGGGTATTT
1 TGGTAATTCTACCCTACAAGGGTATTT
* ** *
9358874 TGGTAATTTTA-CAAACTAGGGGTATTT
1 TGGTAATTCTACCCTAC-AAGGGTATTT
9358901 TGGTAATT
1 TGGTAATT
9358909 TTGTAAACCA
Statistics
Matches: 114, Mismatches: 28, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
26 3 0.03
27 89 0.78
28 22 0.19
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAAGGGTATTT
Found at i:9358908 original size:54 final size:54
Alignment explanation
Indices: 9358782--9359143 Score: 195
Period size: 54 Copynumber: 6.7 Consensus size: 54
9358772 TCTACCCTAC
* * * * * **
9358782 AGGGGTATTTTCGGTATTTCTACCATACAAGGGTATTTCGGTAACTCTACCCTAC-
1 AGGGGTATTTT-GGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTA-CAAACT
***
9358837 AGGGGTATTTCAATAATTCTACCCTACAAGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTACAAACT
* ** * *
9358891 AGGGGTATTTTGGTAATTTTGTAAAC--CAATGGTATTTTGGTAATTTTAC-AAGT
1 AGGGGTATTTTGGTAA--TTCTACCCTACAAGGGTATTTTGGTAATTTTACAAACT
* ** * * **
9358944 CGAGGGTATTTCAGTAATT-T-CAC-AAATCAGAGGTATTTTGGTAATTTTGTAAACT
1 AG-GGGTATTTTGGTAATTCTACCCTACA--AG-GGTATTTTGGTAATTTTACAAACT
** * ** * ** *
9358999 AAAGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTGTAAACC
1 AGGGGTATTTTGGTAATTCTACCCTA-CAAGGGTATTTTGGTAATTTTACAAACT
* * ** * ** *
9359053 AAGGGTATTTTGGTAATTTTA-CAAACCAGGGATATTTTGGTAATTTTGTAAACC
1 AGGGGTATTTTGGTAATTCTACCCTACAAGGG-TATTTTGGTAATTTTACAAACT
*
9359107 AAGGGTATTTTGGTAATTCTACCCTAC-AGGAGTATTT
1 AGGGGTATTTTGGTAATTCTACCCTACAAGG-GTATTT
9359144 CAATAATTTT
Statistics
Matches: 248, Mismatches: 43, Indels: 33
0.77 0.13 0.10
Matches are distributed among these distances:
50 2 0.01
51 2 0.01
52 2 0.01
53 12 0.05
54 204 0.82
55 19 0.08
56 6 0.02
57 1 0.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTACAAACT
Found at i:9358909 original size:27 final size:27
Alignment explanation
Indices: 9358866--9359124 Score: 286
Period size: 27 Copynumber: 9.6 Consensus size: 27
9358856 TACCCTACAA
*
9358866 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
9358893 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* **
9358920 TGGTATTTTGGTAATTTTACAAGTC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
9358946 AGGGTATTTCAGTAATTTCACAAATCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* ** * *
9358974 AGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
9359001 AGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
9359028 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
9359055 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** *
9359082 GGATATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
9359109 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
9359125 CTACCCTACA
Statistics
Matches: 190, Mismatches: 40, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
27 189 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:9359142 original size:81 final size:79
Alignment explanation
Indices: 9358863--9359168 Score: 278
Period size: 81 Copynumber: 3.8 Consensus size: 79
9358853 TTCTACCCTA
*
9358863 CAAGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTTGGTAATTTTGTAAACCAATGGTATT
1 CAAGGGTATTTTGGTAA-TTTACCAAAC-AGGAGTATTTTGGTAATTTTGTAAACCAA-GGTATT
**
9358927 TTGGTAATTTTACAAGT
63 TTGGTAATTTTACAAAC
* ** *
9358944 CGAGGGTATTTCAGTAATTT-CACAAATCA-GAGGTATTTTGGTAATTTTGTAAACTAAAGGTAT
1 CAAGGGTATTTTGGTAATTTAC-CAAA-CAGGA-GTATTTTGGTAATTTTGTAAAC-CAAGGTAT
9359007 TTTGGTAATTTTACAAAC
62 TTTGGTAATTTTACAAAC
* *** ** *
9359025 CAGGGGTATTTTGGTAATTTTGTAAACCAAGG-GTATTTTGGTAATTTTACAAACCAGGGATATT
1 CAAGGGTATTTTGGTAATTTACCAAA-C-AGGAGTATTTTGGTAATTTTGTAAACCAAGG-TATT
**
9359089 TTGGTAATTTTGTAAAC
63 TTGGTAATTTTACAAAC
** *** * *
9359106 CAAGGGTATTTTGGTAATTCTACCCTACAGGAGTATTTCAATAATTTTGTAAACTAAAGTATT
1 CAAGGGTATTTTGGTAATT-TACCAAACAGGAGTATTTTGGTAATTTTGTAAACCAAGGTATT
9359169 CTAAACAGGG
Statistics
Matches: 180, Mismatches: 34, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
80 14 0.08
81 159 0.88
82 6 0.03
83 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (79 bp):
CAAGGGTATTTTGGTAATTTACCAAACAGGAGTATTTTGGTAATTTTGTAAACCAAGGTATTTTG
GTAATTTTACAAAC
Found at i:9359159 original size:54 final size:53
Alignment explanation
Indices: 9358865--9359124 Score: 322
Period size: 54 Copynumber: 4.8 Consensus size: 53
9358855 CTACCCTACA
** * * **
9358865 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACC
1 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACC
* ** ** * ** * *
9358918 AATGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTCACAAATC
1 -AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACC
* *
9358972 AGAGGTATTTTGGTAATTTTGTAAACTAAAGGTATTTTGGTAATTTTACAAACC
1 AG-GGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACC
9359026 AGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACC
1 A-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACC
9359080 AGGGATATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATT
1 AGGG-TATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATT
9359125 CTACCCTACA
Statistics
Matches: 177, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
53 4 0.02
54 172 0.97
55 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACC
Found at i:9363184 original size:15 final size:16
Alignment explanation
Indices: 9363164--9363197 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
9363154 TTTTTCAACT
9363164 TTTAATCATTTTTA-A
1 TTTAATCATTTTTACA
*
9363179 TTTAATGATTTTTACA
1 TTTAATCATTTTTACA
9363195 TTT
1 TTT
9363198 TTACATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTAATCATTTTTACA
Found at i:9363540 original size:27 final size:27
Alignment explanation
Indices: 9363510--9363587 Score: 93
Period size: 29 Copynumber: 2.8 Consensus size: 27
9363500 ATTGTAGTTT
*
9363510 TTACAATTTTTTACATTTTAAGCACTA
1 TTACAATTTTTTACATTTTAAGAACTA
* *
9363537 TTACAATTTTTTTTGCATTTTAAGAACTT
1 TTACAA--TTTTTTACATTTTAAGAACTA
*
9363566 TTACAATTTTTTAATATTTTAA
1 TTACAATTTTTT-ACATTTTAA
9363588 ATTAATTTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
27 12 0.28
28 7 0.16
29 24 0.56
ACGTcount: A:0.32, C:0.10, G:0.04, T:0.54
Consensus pattern (27 bp):
TTACAATTTTTTACATTTTAAGAACTA
Found at i:9363557 original size:29 final size:29
Alignment explanation
Indices: 9363516--9363577 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
9363506 GTTTTTACAA
*
9363516 TTTTTTACATTTTAAGCACTATTACAATT
1 TTTTTTACATTTTAAGAACTATTACAATT
* *
9363545 TTTTTTGCATTTTAAGAACTTTTACAATT
1 TTTTTTACATTTTAAGAACTATTACAATT
9363574 TTTT
1 TTTT
9363578 AATATTTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.11, G:0.05, T:0.56
Consensus pattern (29 bp):
TTTTTTACATTTTAAGAACTATTACAATT
Found at i:9363695 original size:10 final size:10
Alignment explanation
Indices: 9363676--9363708 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
9363666 CAACGACCAA
*
9363676 TCAACGTAGG
1 TCAACATAGG
9363686 TCAACATAGG
1 TCAACATAGG
9363696 TCAACAT-GG
1 TCAACATAGG
9363705 TCAA
1 TCAA
9363709 TGGTGGTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 6 0.27
10 16 0.73
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (10 bp):
TCAACATAGG
Found at i:9363778 original size:20 final size:19
Alignment explanation
Indices: 9363734--9363778 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
9363724 GATCAACTTG
*
9363734 GTCAACATGGCACATCATC
1 GTCAACATGCCACATCATC
*
9363753 GATCAACATGCCACATTATC
1 G-TCAACATGCCACATCATC
9363773 AGTCAA
1 -GTCAA
9363779 TGTTGCAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 20 0.91
21 1 0.05
ACGTcount: A:0.36, C:0.29, G:0.13, T:0.22
Consensus pattern (19 bp):
GTCAACATGCCACATCATC
Found at i:9371203 original size:15 final size:15
Alignment explanation
Indices: 9371183--9371215 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
9371173 CAATGATCAT
9371183 TTAGAGACCTTGGAC
1 TTAGAGACCTTGGAC
9371198 TTAGAGACCTTGGAC
1 TTAGAGACCTTGGAC
9371213 TTA
1 TTA
9371216 TTCACGTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (15 bp):
TTAGAGACCTTGGAC
Found at i:9377813 original size:14 final size:15
Alignment explanation
Indices: 9377787--9377815 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
9377777 CTATTTCAAG
9377787 GACAAGAAAAATCCA
1 GACAAGAAAAATCCA
9377802 GACAAG-AAAATCCA
1 GACAAGAAAAATCCA
9377816 TATGAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.59, C:0.21, G:0.14, T:0.07
Consensus pattern (15 bp):
GACAAGAAAAATCCA
Found at i:9378495 original size:24 final size:24
Alignment explanation
Indices: 9378463--9378539 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
9378453 AAGTCTGTCA
*
9378463 GGAGAGGATTTAGGAGCTAATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
9378487 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
9378511 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
9378535 GGAGA
1 GGAGA
9378540 ACAGTGTTGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.34, C:0.03, G:0.42, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:9379988 original size:27 final size:26
Alignment explanation
Indices: 9379950--9380059 Score: 130
Period size: 27 Copynumber: 4.1 Consensus size: 26
9379940 GAAGCGTCCA
*
9379950 GGTGGCTATGCCACAATTATCTGATCT
1 GGTGGCTCTGCCAC-ATTATCTGATCT
*
9379977 GGTGGCTCTGCCACATATATCTGTTCT
1 GGTGGCTCTGCCACAT-TATCTGATCT
*
9380004 GGTGGCTCTGCCACGATTATCTATATCT
1 GGTGGCTCTGCCAC-ATTATCT-GATCT
* * *
9380032 GGTGACTCTGTCACATTATCTGTTCT
1 GGTGGCTCTGCCACATTATCTGATCT
9380058 GG
1 GG
9380060 CAGTCATGCT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.10
27 48 0.67
28 17 0.24
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
GGTGGCTCTGCCACATTATCTGATCT
Found at i:9380052 original size:54 final size:54
Alignment explanation
Indices: 9379950--9380059 Score: 159
Period size: 54 Copynumber: 2.0 Consensus size: 54
9379940 GAAGCGTCCA
*
9379950 GGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCT
1 GGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCT
* * * *
9380004 GGTGGCTCTGCCACGATTATCTATATCTGGTGACTCTGTCACAT-TATCTGTTCT
1 GGTGGCTATGCCACAATTATCT-GATCTGGTGACTCTGCCACATATATCTGTTCT
9380058 GG
1 GG
9380060 CAGTCATGCT
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
GGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCT
Found at i:9382274 original size:27 final size:27
Alignment explanation
Indices: 9382226--9382330 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
9382216 GCGAGGCTGC
* *
9382226 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
9382253 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
9382279 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
9382306 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
9382331 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 8 0.11
27 60 0.85
28 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:9382462 original size:26 final size:26
Alignment explanation
Indices: 9382433--9382482 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
9382423 GCAAAATTAA
*
9382433 ACCTAGGGGTATAACGGTAATTTTGC
1 ACCTAGGGGTATAACAGTAATTTTGC
*
9382459 ACCTAGGGGTATAATAGTAATTTT
1 ACCTAGGGGTATAACAGTAATTTT
9382483 CCATACATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (26 bp):
ACCTAGGGGTATAACAGTAATTTTGC
Found at i:9383979 original size:26 final size:26
Alignment explanation
Indices: 9383949--9384004 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
9383939 TGAAATTCCC
9383949 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
**
9383975 ATCATGGGACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
9384001 ATCA
1 ATCA
9384005 ATTTGTATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:9388053 original size:17 final size:16
Alignment explanation
Indices: 9388022--9388052 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9388012 TTTTCGCAAA
*
9388022 AAAATTTTTGTTTTTG
1 AAAATCTTTGTTTTTG
9388038 AAAATCTTTGTTTTT
1 AAAATCTTTGTTTTT
9388053 TTGTAAACCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.03, G:0.10, T:0.61
Consensus pattern (16 bp):
AAAATCTTTGTTTTTG
Found at i:9390085 original size:24 final size:24
Alignment explanation
Indices: 9390053--9390099 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
9390043 TTCATCCATT
9390053 AAATTCTTTAATACAAAAGACATG
1 AAATTCTTTAATACAAAAGACATG
9390077 AAATTCTTTAATACAAAAGACAT
1 AAATTCTTTAATACAAAAGACAT
9390100 TTACCTAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.30
Consensus pattern (24 bp):
AAATTCTTTAATACAAAAGACATG
Found at i:9390132 original size:26 final size:26
Alignment explanation
Indices: 9390096--9390195 Score: 191
Period size: 26 Copynumber: 3.8 Consensus size: 26
9390086 AATACAAAAG
*
9390096 ACATTTACCTAACCCATTATCATGGA
1 ACATTTACCTAACCCATTATCATGAA
9390122 ACATTTACCTAACCCATTATCATGAA
1 ACATTTACCTAACCCATTATCATGAA
9390148 ACATTTACCTAACCCATTATCATGAA
1 ACATTTACCTAACCCATTATCATGAA
9390174 ACATTTACCTAACCCATTATCA
1 ACATTTACCTAACCCATTATCA
9390196 ATTTGTATCA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.37, C:0.28, G:0.04, T:0.31
Consensus pattern (26 bp):
ACATTTACCTAACCCATTATCATGAA
Found at i:9391465 original size:33 final size:33
Alignment explanation
Indices: 9391413--9391559 Score: 150
Period size: 33 Copynumber: 4.5 Consensus size: 33
9391403 TCGATGGACG
* * * * *
9391413 TAACATTTTCCAGTCGTACACTCAAGGTGTACA
1 TAACCTTTTCAAGTGGTACACACAAAGTGTACA
** ** *
9391446 TTCCCTTTTCAAGTGGTACACTTAAAGTGTACG
1 TAACCTTTTCAAGTGGTACACACAAAGTGTACA
* * *
9391479 TAGCCTTTTCAAATTGTACACACAAAGTGTACA
1 TAACCTTTTCAAGTGGTACACACAAAGTGTACA
* **
9391512 TAACCTTTTCAAATTTTACACACAAAGTGTACA
1 TAACCTTTTCAAGTGGTACACACAAAGTGTACA
9391545 TAACCTTTTCAAGTG
1 TAACCTTTTCAAGTG
9391560 TACCATTTAG
Statistics
Matches: 95, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 95 1.00
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (33 bp):
TAACCTTTTCAAGTGGTACACACAAAGTGTACA
Found at i:9392293 original size:20 final size:20
Alignment explanation
Indices: 9392241--9392293 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 20
9392231 GTAAAAGTTG
9392241 TTTACCTATCAATAACCTTTCA
1 TTTA-CTATC-ATAACCTTTCA
* *
9392263 TTTTCTATCATAATCTTTCAA
1 TTTACTATCATAACCTTTC-A
9392284 TTTACT-TCAT
1 TTTACTATCAT
9392294 CTTCATCCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 13 0.48
21 11 0.41
22 3 0.11
ACGTcount: A:0.28, C:0.23, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTACTATCATAACCTTTCA
Found at i:9398765 original size:68 final size:67
Alignment explanation
Indices: 9398693--9398842 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
9398683 CATCATGTGT
* * * *
9398693 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
9398755 ATGTAG
62 ATGTAG
** * *
9398761 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
9398826 AG
66 AG
9398828 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
9398843 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:9398798 original size:64 final size:64
Alignment explanation
Indices: 9398717--9398900 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
9398707 AGACATTATG
* *
9398717 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
9398781 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
9398846 AA
63 AA
* * * *
9398848 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
9398901 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:9408273 original size:30 final size:30
Alignment explanation
Indices: 9408239--9408299 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
9408229 TCCTTAACTC
9408239 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
9408269 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
9408299 A
1 A
9408300 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:9438609 original size:55 final size:53
Alignment explanation
Indices: 9438538--9438680 Score: 189
Period size: 55 Copynumber: 2.7 Consensus size: 53
9438528 ATTGACAGTT
*
9438538 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-C-ATAAAGC
* * * *
9438593 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAAGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAAGC
* *
9438646 AAGGATACCACGTAAAACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
9438681 ATGGTAAGTT
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
52 4 0.05
53 31 0.41
54 1 0.01
55 36 0.47
56 4 0.05
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAAGC
Found at i:9438691 original size:53 final size:54
Alignment explanation
Indices: 9438538--9438696 Score: 198
Period size: 53 Copynumber: 3.0 Consensus size: 54
9438528 ATTGACAGTT
* *
9438538 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTT-C-ATAAAGCA
* * *
9438594 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAAGC-
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATAAAGCA
* * * *
9438646 AAGGATACCACGTAAAACCATGTCAAGACATGGCAATGGTAAGTTCA-AAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATAAAG
9438697 GAAAAGGTTC
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
52 8 0.09
53 41 0.46
54 1 0.01
55 36 0.40
56 4 0.04
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATAAAGCA
Found at i:9439043 original size:164 final size:164
Alignment explanation
Indices: 9438764--9439095 Score: 621
Period size: 164 Copynumber: 2.0 Consensus size: 164
9438754 GAAGAAAGAT
9438764 ACAAGTATGCATTTAAGGCTTATTTAATATTGATTGAGATTATCAAGTATTAAGTAAGTGATGAG
1 ACAAGTATGCATTTAAGGCTTATTTAATATTGATTGAGATTATCAAGTATTAAGTAAGTGATGAG
* *
9438829 TTTTCAGTTATGCTTGTGACACTTTATGATATGATTGGTAATACGCCTATATTATGAAAGAGTAC
66 TTTTCAGTTATGCTTGTGACACTTTATGACATGATTGGCAATACGCCTATATTATGAAAGAGTAC
*
9438894 TCATGTGTTAAGTGAGATGTTGTAGGTATGTAAG
131 TCATGTGTTAAGTGAGATGTTGCAGGTATGTAAG
9438928 ACAAGTATGCATTTAAGGCTTATTTAATATTGATTGAGATTATCAAGTATTAAGTAAGTGATGAG
1 ACAAGTATGCATTTAAGGCTTATTTAATATTGATTGAGATTATCAAGTATTAAGTAAGTGATGAG
*
9438993 TTTTCAGTTATGCTTGTGACACTTTATGACATGATTGGCAATATGCCTATATTATGAAAGAGTAC
66 TTTTCAGTTATGCTTGTGACACTTTATGACATGATTGGCAATACGCCTATATTATGAAAGAGTAC
9439058 TCATGTGTTAAGTGAGATGTTGCAGGTATGTAAG
131 TCATGTGTTAAGTGAGATGTTGCAGGTATGTAAG
9439092 -CAAG
1 ACAAG
9439096 CTATTAAGTA
Statistics
Matches: 164, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
163 4 0.02
164 160 0.98
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (164 bp):
ACAAGTATGCATTTAAGGCTTATTTAATATTGATTGAGATTATCAAGTATTAAGTAAGTGATGAG
TTTTCAGTTATGCTTGTGACACTTTATGACATGATTGGCAATACGCCTATATTATGAAAGAGTAC
TCATGTGTTAAGTGAGATGTTGCAGGTATGTAAG
Found at i:9444802 original size:55 final size:54
Alignment explanation
Indices: 9444731--9444982 Score: 283
Period size: 55 Copynumber: 4.6 Consensus size: 54
9444721 ATTGACGGTT
*
9444731 AAGGATACCATGTAAGACTATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGG-TACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGCA
* * * *
9444787 AAGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC-
1 AAGGTACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCA
* ** * *
9444840 AAGGAAATTAGGTAAGACTATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA
1 AAGG-TACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATAAGGCA
* * * * * *
9444896 AAGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAAGTA
1 AAGGTACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCA
* * *
9444949 ATGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGTACCATGTAAGACCATGTCAAGACATGGCA
9444983 ATGGTAAGTT
Statistics
Matches: 162, Mismatches: 31, Indels: 9
0.80 0.15 0.04
Matches are distributed among these distances:
53 38 0.23
54 41 0.25
55 75 0.46
56 8 0.05
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGTACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATAAGGCA
Found at i:9444864 original size:109 final size:108
Alignment explanation
Indices: 9444731--9444982 Score: 387
Period size: 109 Copynumber: 2.3 Consensus size: 108
9444721 ATTGACGGTT
* *
9444731 AAGGATACCATGTAAGACTATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCA
1 AAGGAAACCACGTAAGACTATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCA
*
9444796 TGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
66 TGTAAGACCATGCCAAGGCATGGCATTGATAAGTTC-ATAAAGC
** *
9444840 AAGGAAATTAGGTAAGACTATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCA
1 AAGGAAACCACGTAAGACTATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCA
* * *
9444905 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAAGT
66 TGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCATAAAGC
* * *
9444948 AATGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGAAACCACGTAAGACTATGTCAAGACATGGCA
9444983 ATGGTAAGTT
Statistics
Matches: 129, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
108 34 0.26
109 95 0.74
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (108 bp):
AAGGAAACCACGTAAGACTATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCA
TGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCATAAAGC
Found at i:9446687 original size:43 final size:43
Alignment explanation
Indices: 9446606--9446716 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 43
9446596 CACTTTTATT
* * * *
9446606 GCTAAATAACATGATCTTTAGCGGCGCTTTCACTACAAACTCT
1 GCTAAAGAACATGATCTTTAGCGGCACTTTCACTACAAACGCC
* * *
9446649 GTTATAGAACATGATCTTTAGCGGCACTTTTA-TGACAAACGCC
1 GCTAAAGAACATGATCTTTAGCGGCACTTTCACT-ACAAACGCC
* *
9446692 GCTAAAGGACATGATCTTTTGCGGC
1 GCTAAAGAACATGATCTTTAGCGGC
9446717 GTTTGTAAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 1 0.02
43 55 0.98
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (43 bp):
GCTAAAGAACATGATCTTTAGCGGCACTTTCACTACAAACGCC
Found at i:9455209 original size:87 final size:86
Alignment explanation
Indices: 9455055--9455218 Score: 213
Period size: 87 Copynumber: 1.9 Consensus size: 86
9455045 TACATGCATA
*
9455055 AGGTTAAGTTCTTACTCTTAATGAATTCATAGCCCAGAATTTAGGTGGTCCTATTAAGACAAACT
1 AGGTTAAGTTCTTACTCTTAACGAATTCATAGCCCAGAATTTAGGTGGTCCTATTAAGACAAACT
*
9455120 TGATGAATTCACCGACATATG
66 TGATAAATTCACCGACATATG
* * * * * * * *
9455141 AGGTTGAGTTTCTTACTTTTAACGATTTCATATCCTA-AAGTTTGGGTGGTCCTGTTGAGACAAA
1 AGGTTAAG-TTCTTACTCTTAACGAATTCATAGCCCAGAA-TTTAGGTGGTCCTATTAAGACAAA
9455205 CTTGATAAATTCAC
64 CTTGATAAATTCAC
9455219 TAAATTTAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
86 9 0.14
87 57 0.86
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.35
Consensus pattern (86 bp):
AGGTTAAGTTCTTACTCTTAACGAATTCATAGCCCAGAATTTAGGTGGTCCTATTAAGACAAACT
TGATAAATTCACCGACATATG
Found at i:9455925 original size:22 final size:24
Alignment explanation
Indices: 9455897--9455941 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
9455887 TTGGCCGTTG
9455897 GTTGGCTT-TGCCA-TTTCTGGCT
1 GTTGGCTTATGCCAGTTTCTGGCT
*
9455919 GTTGGCTTATGGCAGTTTCTGGC
1 GTTGGCTTATGCCAGTTTCTGGC
9455942 CATTGGACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 8 0.40
23 4 0.20
24 8 0.40
ACGTcount: A:0.07, C:0.20, G:0.31, T:0.42
Consensus pattern (24 bp):
GTTGGCTTATGCCAGTTTCTGGCT
Found at i:9455947 original size:24 final size:22
Alignment explanation
Indices: 9455898--9455947 Score: 55
Period size: 24 Copynumber: 2.2 Consensus size: 22
9455888 TGGCCGTTGG
**
9455898 TTGGCTTTGCCATTTCTGGCTG
1 TTGGCTTTGCCATTTCTGGCCA
*
9455920 TTGGCTTATGGCAGTTTCTGGCCA
1 TTGGCTT-TGCCA-TTTCTGGCCA
9455944 TTGG
1 TTGG
9455948 ACTAACCCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 7 0.30
23 4 0.17
24 12 0.52
ACGTcount: A:0.08, C:0.20, G:0.30, T:0.42
Consensus pattern (22 bp):
TTGGCTTTGCCATTTCTGGCCA
Found at i:9460010 original size:27 final size:27
Alignment explanation
Indices: 9459980--9460198 Score: 140
Period size: 27 Copynumber: 8.1 Consensus size: 27
9459970 GCAAAATGGC
* * *
9459980 AATTTTACCCCACAAGGGCATCTTGGT
1 AATTTTACCCTACAAGGGTATTTTGGT
* * *
9460007 AATTCTACCCTATAAGGGTATTTTGAT
1 AATTTTACCCTACAAGGGTATTTTGGT
*
9460034 -ATTTCTACCCTACAAGGGTATTTCGGT
1 AATTT-TACCCTACAAGGGTATTTTGGT
* *
9460061 AATTTTATCCTACAGGGGTATTTTGGT
1 AATTTTACCCTACAAGGGTATTTTGGT
* * * ***
9460088 AATTCTACCTTA-TAGAGGTATTTCAAT
1 AATTTTACCCTACAAG-GGTATTTTGGT
* * * *
9460115 AATTCTACCCTATAGGGGTA-TTTGAAT
1 AATTTTACCCTACAAGGGTATTTTG-GT
* * * * *
9460142 AATTCTACCCTATAGGGGTGTTTCGGT
1 AATTTTACCCTACAAGGGTATTTTGGT
* * *
9460169 AATTCTACCTTAC-AGGGTATTTCGGT
1 AATTTTACCCTACAAGGGTATTTTGGT
9460195 AATT
1 AATT
9460199 CTACAACTTA
Statistics
Matches: 153, Mismatches: 33, Indels: 13
0.77 0.17 0.07
Matches are distributed among these distances:
26 21 0.14
27 124 0.81
28 8 0.05
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.38
Consensus pattern (27 bp):
AATTTTACCCTACAAGGGTATTTTGGT
Found at i:9460049 original size:54 final size:54
Alignment explanation
Indices: 9459980--9460202 Score: 211
Period size: 54 Copynumber: 4.1 Consensus size: 54
9459970 GCAAAATGGC
* * * *
9459980 AATTTTACCCCACAAGGGCATCTT-GGTAATTCTACCCTATAAGGGTATTTTGAT
1 AATTCTACCCTACAAGGGTAT-TTCGGTAATTCTACCCTATAGGGGTATTTTGAT
* * * * *
9460034 ATTTCTACCCTACAAGGGTATTTCGGTAATTTTATCCTACAGGGGTATTTTGGT
1 AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTGAT
* * **
9460088 AATTCTACCTTA-TAGAGGTATTTCAATAATTCTACCCTATAGGGGTA-TTTGAAT
1 AATTCTACCCTACAAG-GGTATTTCGGTAATTCTACCCTATAGGGGTATTTTG-AT
* * * * * * *
9460142 AATTCTACCCTATAGGGGTGTTTCGGTAATTCTACCTTACA-GGGTATTTCGGT
1 AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTGAT
9460195 AATTCTAC
1 AATTCTAC
9460203 AACTTATTCA
Statistics
Matches: 136, Mismatches: 28, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
53 22 0.16
54 113 0.83
55 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (54 bp):
AATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTGAT
Found at i:9460121 original size:81 final size:81
Alignment explanation
Indices: 9460002--9460202 Score: 237
Period size: 81 Copynumber: 2.5 Consensus size: 81
9459992 CAAGGGCATC
* * * *
9460002 TTGGTAATTCTACCCTATA-AGGGTATTTTGATATTTCTACCCTACAAGGGTATTTCG-GTAATT
1 TTGGTAATTCTACCTTATAGA-GGTATTTCGATAATTCTACCCTACAAGGGTATTT-GAATAATT
* *
9460065 TTATCCTACAGGGGTATT
64 CTACCCTACAGGGGTATT
* * *
9460083 TTGGTAATTCTACCTTATAGAGGTATTTCAATAATTCTACCCTATAGGGGTATTTGAATAATTCT
1 TTGGTAATTCTACCTTATAGAGGTATTTCGATAATTCTACCCTACAAGGGTATTTGAATAATTCT
* *
9460148 ACCCTATAGGGGTGTT
66 ACCCTACAGGGGTATT
* * *
9460164 TCGGTAATTCTACCTTACAG-GGTATTTCGGTAATTCTAC
1 TTGGTAATTCTACCTTATAGAGGTATTTCGATAATTCTAC
9460203 AACTTATTCA
Statistics
Matches: 103, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
80 18 0.17
81 84 0.82
82 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.40
Consensus pattern (81 bp):
TTGGTAATTCTACCTTATAGAGGTATTTCGATAATTCTACCCTACAAGGGTATTTGAATAATTCT
ACCCTACAGGGGTATT
Found at i:9467295 original size:27 final size:26
Alignment explanation
Indices: 9467247--9467306 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
9467237 GCGAGGCTGC
*
9467247 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
9467274 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
9467300 CAGATAT
1 CAGATAT
9467307 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:9468077 original size:27 final size:27
Alignment explanation
Indices: 9468047--9468219 Score: 256
Period size: 27 Copynumber: 6.4 Consensus size: 27
9468037 TAGGCAAAAT
* * *
9468047 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
9468074 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
9468101 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
9468128 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
9468155 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
9468182 AATAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
9468209 GGTAATTCTAC
1 GGTAATTCTAC
9468220 AACTTATTCA
Statistics
Matches: 130, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 130 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:9478013 original size:32 final size:32
Alignment explanation
Indices: 9477972--9478036 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
9477962 AGAAATAGAG
9477972 TTTGATTAGTTGCTTTAGATTCAAATCTTTGT
1 TTTGATTAGTTGCTTTAGATTCAAATCTTTGT
9478004 TTTGATTAGTTGCTTTAGATTCAAATCTTTGT
1 TTTGATTAGTTGCTTTAGATTCAAATCTTTGT
9478036 T
1 T
9478037 GCATGAGGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.22, C:0.09, G:0.15, T:0.54
Consensus pattern (32 bp):
TTTGATTAGTTGCTTTAGATTCAAATCTTTGT
Found at i:9487448 original size:51 final size:49
Alignment explanation
Indices: 9487324--9487518 Score: 239
Period size: 49 Copynumber: 3.9 Consensus size: 49
9487314 TAGCCGAAGC
* *
9487324 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
9487373 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
9487424 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCCAA-
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAAT
* * * *
9487473 AATCTGGTACACGTAGTAGCCTGCACTTCGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
9487519 TCACAATAGC
Statistics
Matches: 124, Mismatches: 20, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
48 2 0.02
49 76 0.61
50 3 0.02
51 43 0.35
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:9487491 original size:100 final size:100
Alignment explanation
Indices: 9487318--9487516 Score: 337
Period size: 100 Copynumber: 2.0 Consensus size: 100
9487308 CACTTGTAGC
* *
9487318 CGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTAC
1 CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTAC
9487383 ACGTAGTAGCCTGCACTTAGTACTACACACGTGAT
66 ACGTAGTAGCCTGCACTTAGTACTACACACGTGAT
* *
9487418 CGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCCAA-AATCTGGTA
1 CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAATAATCCGGTA
*
9487482 CACGTAGTAGCCTGCACTTCGTACTACACACGTGA
65 CACGTAGTAGCCTGCACTTAGTACTACACACGTGA
9487517 CCTCACAATA
Statistics
Matches: 93, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
100 89 0.96
101 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (100 bp):
CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTAC
ACGTAGTAGCCTGCACTTAGTACTACACACGTGAT
Found at i:9493126 original size:49 final size:49
Alignment explanation
Indices: 9493062--9493185 Score: 203
Period size: 49 Copynumber: 2.5 Consensus size: 49
9493052 CTGGTACGCA
**
9493062 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACG
*
9493111 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACG
* *
9493160 TAGTATCCTGCACTTAATACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
9493186 CGTGACCTCA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 70 1.00
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACG
Found at i:9495117 original size:29 final size:29
Alignment explanation
Indices: 9495054--9495121 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
9495044 TAATCAACCG
*
9495054 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
9495083 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
9495112 CGCACACTTA
1 CGCACACTTA
9495122 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:9495234 original size:174 final size:174
Alignment explanation
Indices: 9494943--9495270 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
9494933 AACTCAAGGT
* * *
9494943 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
*
9495008 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
9495073 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
9495117 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
9495182 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
*
9495247 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
9495271 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:9495262 original size:29 final size:30
Alignment explanation
Indices: 9495223--9495301 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
9495213 CTTAATAATC
9495223 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
9495253 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
9495282 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
9495302 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:9501188 original size:37 final size:37
Alignment explanation
Indices: 9501129--9501237 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
9501119 AGCTCAGACG
* *
9501129 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
9501166 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
9501203 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
9501238 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:9501507 original size:48 final size:48
Alignment explanation
Indices: 9501383--9501615 Score: 396
Period size: 48 Copynumber: 4.8 Consensus size: 48
9501373 GCACATCGCC
*
9501383 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
9501433 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
9501481 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
9501529 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
9501577 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
9501616 TGCATGTTCA
Statistics
Matches: 176, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
48 132 0.75
49 2 0.01
50 42 0.24
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:9501664 original size:47 final size:47
Alignment explanation
Indices: 9501585--9501872 Score: 468
Period size: 47 Copynumber: 6.1 Consensus size: 47
9501575 CATACATATT
* * * *
9501585 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
9501632 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
9501679 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
9501726 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
9501773 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
9501820 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
9501867 TCACAT
1 TCACAT
9501873 AAAATCCTAA
Statistics
Matches: 225, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 225 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:9501758 original size:141 final size:141
Alignment explanation
Indices: 9501490--9501872 Score: 470
Period size: 141 Copynumber: 2.7 Consensus size: 141
9501480 ATACATATTT
* * * * *
9501490 CACATTAGCCATTCGGCTTTA-C-CACATATGCATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTC--ACAT-TCATCACATTGGCCATTC
* * * * * * *
9501552 GGCTTTACCACATATACATATCTCATACATATT--TCACATTAGCCATTCGGCTTTACCACATAT
62 GGCCTTATCACATAT--ATA-CACATTCACATTCATCACATTAGCCATTCGGCCTTACCACACAT
*
9501615 ATGCATGTTCATATTCAC
124 ATGCATGTTCACATTCAC
9501633 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
* ** * *
9501698 TTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATG
66 TTATCACATATATACACATTCACATTCATCACATTAGCCATTCGGCCTTACCACACATATGCATG
*
9501763 TTCACATTCAT
131 TTCACATTCAC
* *
9501774 CACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
*
9501839 TTATCTCATATATACACATTCACATTCATCACAT
66 TTATCACATATATACACATTCACATTCATCACAT
9501873 AAAATCCTAA
Statistics
Matches: 210, Mismatches: 25, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
139 7 0.03
140 2 0.01
141 136 0.65
142 31 0.15
143 19 0.09
144 4 0.02
145 11 0.05
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (141 bp):
CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
TTATCACATATATACACATTCACATTCATCACATTAGCCATTCGGCCTTACCACACATATGCATG
TTCACATTCAC
Found at i:9506728 original size:110 final size:110
Alignment explanation
Indices: 9506587--9506791 Score: 392
Period size: 110 Copynumber: 1.9 Consensus size: 110
9506577 GTATCCTTTT
*
9506587 GAAACTTACCATTGCCATGTCTTGACATGGTATTAAATAATATCCTTTCCTTAGAAACCTTACCA
1 GAAACTTACCAATGCCATGTCTTGACATGGTATTAAATAATATCCTTTCCTTAGAAACCTTACCA
9506652 AATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
66 AATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
*
9506697 GAAACTTATCAATGCCATGTCTTGACATGGTATTAAATAATATCCTTTCCTTAGAAACCTTACCA
1 GAAACTTACCAATGCCATGTCTTGACATGGTATTAAATAATATCCTTTCCTTAGAAACCTTACCA
9506762 AATGCCATGCCTTGGCATGGTCTTACATGG
66 AATGCCATGCCTTGGCATGGTCTTACATGG
9506792 TATCCTTAAA
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 93 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTCTTGACATGGTATTAAATAATATCCTTTCCTTAGAAACCTTACCA
AATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:9506796 original size:55 final size:53
Alignment explanation
Indices: 9506540--9506798 Score: 231
Period size: 55 Copynumber: 4.8 Consensus size: 53
9506530 ATACACGGGT
* ** ** *
9506540 AACTTACCATTGCCATAACTTTTCATGGTCTTACGTGGTATCC-TT--TT-GA
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTCCTTAGA
* * * * **
9506589 AACTTACCATTGCCATGTCTTGACATGGTATTAAATAATATCCTTTCCTTAGA
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTCCTTAGA
* *
9506642 AACCTTACCAAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGA
1 AA-CTTACC-AATGCCATGCCTTGACATGGTCTTACATGGTATCCTTT-CC-T-TAGA
* * * * **
9506699 AACTTATCAATGCCATGTCTTGACATGGTATTAAATAATATCCTTTCCTTAGA
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTCCTTAGA
*
9506752 AACCTTACCAAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACC-AATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
9506799 AAACCCTAAT
Statistics
Matches: 166, Mismatches: 32, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
49 34 0.20
50 2 0.01
52 2 0.01
53 10 0.06
54 17 0.10
55 84 0.51
56 11 0.07
57 6 0.04
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTCCTTAGA
Found at i:9516388 original size:52 final size:53
Alignment explanation
Indices: 9516309--9516411 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 53
9516299 TCTGTAACAA
9516309 CCCATTTTTAGGGTTAATCGGAACAGTGGTTTCGGGGCCACCAAATCCGACAG
1 CCCATTTTTAGGGTTAATCGGAACAGTGGTTTCGGGGCCACCAAATCCGACAG
9516362 CCCA-TTTTAGGGTTAATCGGAACAGTGGTTTCGGGGCCACCAAATCCGAC
1 CCCATTTTTAGGGTTAATCGGAACAGTGGTTTCGGGGCCACCAAATCCGAC
9516412 GAGTAGGTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 46 0.92
53 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.24
Consensus pattern (53 bp):
CCCATTTTTAGGGTTAATCGGAACAGTGGTTTCGGGGCCACCAAATCCGACAG
Found at i:9517866 original size:28 final size:28
Alignment explanation
Indices: 9517829--9517935 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
9517819 GCAATCAAAT
*
9517829 ATGGTACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
9517857 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
9517885 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * *
9517913 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
9517936 CGAATGATTC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:9530195 original size:114 final size:112
Alignment explanation
Indices: 9529994--9530221 Score: 420
Period size: 114 Copynumber: 2.0 Consensus size: 112
9529984 ATTTAATTGT
9529994 ATCTCTAATATTTTTAATGATTTTTCAAACTCACATCACTGCTGCTGTCTGAATCTATTTTATGG
1 ATCTCTAATATTTTTAATGATTTTTCAAACTCACATCACTGCTGCTGTCTGAATCTATTTTATGG
*
9530059 TAAATTTTACCTATTTCATGGTTTCCATGGATTAGCTAGCAATTTAGC
66 TAAATTTTACCAATTTCATGGTTTCCATGGATTAGCTAGCAA-TTAGC
9530107 ANTCTCTAATATTTTTAATGATTTTTCAAACTCACATCACTGCTGCTGTCTGAATCTATTTTATG
1 A-TCTCTAATATTTTTAATGATTTTTCAAACTCACATCACTGCTGCTGTCTGAATCTATTTTATG
*
9530172 GTAAATTTTGCCAATTTCATGGTTTCCATGGATTAGCTAGCAATTAGC
65 GTAAATTTTACCAATTTCATGGTTTCCATGGATTAGCTAGCAATTAGC
9530220 AT
1 AT
9530222 ACATAACACC
Statistics
Matches: 112, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
112 1 0.01
113 7 0.06
114 104 0.93
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.43
Consensus pattern (112 bp):
ATCTCTAATATTTTTAATGATTTTTCAAACTCACATCACTGCTGCTGTCTGAATCTATTTTATGG
TAAATTTTACCAATTTCATGGTTTCCATGGATTAGCTAGCAATTAGC
Found at i:9531578 original size:15 final size:15
Alignment explanation
Indices: 9531560--9531603 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
9531550 AGAGAGAGAA
9531560 ATCCGGAATAAAGAG
1 ATCCGGAATAAAGAG
*
9531575 ATCCAGAATAAAGAG
1 ATCCGGAATAAAGAG
9531590 ATCCAGG-ATAAAGA
1 ATCC-GGAATAAAGA
9531604 AACCCAAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 25 0.96
16 1 0.04
ACGTcount: A:0.50, C:0.14, G:0.23, T:0.14
Consensus pattern (15 bp):
ATCCGGAATAAAGAG
Found at i:9533258 original size:21 final size:20
Alignment explanation
Indices: 9533233--9533273 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
9533223 TTGTTTCTAA
*
9533233 TAAAACTATACTCAATAAGG
1 TAAAACTAGACTCAATAAGG
*
9533253 NTAAAACTAGACTTAATAAGG
1 -TAAAACTAGACTCAATAAGG
9533274 AATCTTTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.24
Consensus pattern (20 bp):
TAAAACTAGACTCAATAAGG
Found at i:9539909 original size:22 final size:24
Alignment explanation
Indices: 9539881--9539931 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 24
9539871 AATTTATGAT
*
9539881 TAAAAAAATAA-AATTAG-TATAA
1 TAAAAAAATAAGAAGTAGTTATAA
*
9539903 T-AAAAAATAAGAAGTAGTTTTAA
1 TAAAAAAATAAGAAGTAGTTATAA
9539926 TAAAAA
1 TAAAAA
9539932 TTAAAAACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 9 0.38
22 6 0.25
23 5 0.21
24 4 0.17
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (24 bp):
TAAAAAAATAAGAAGTAGTTATAA
Found at i:9539926 original size:23 final size:21
Alignment explanation
Indices: 9539883--9539937 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 21
9539873 TTTATGATTA
*
9539883 AAAAAATAAAATTAGTATAAT
1 AAAAAATAAAAGTAGTATAAT
*
9539904 AAAAAATAAGAAGTAGTTTTAAT
1 AAAAAATAA-AAGTAG-TATAAT
*
9539927 AAAAATTAAAA
1 AAAAAATAAAA
9539938 ACATAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 9 0.31
22 7 0.24
23 13 0.45
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.27
Consensus pattern (21 bp):
AAAAAATAAAAGTAGTATAAT
Found at i:9539932 original size:22 final size:20
Alignment explanation
Indices: 9539880--9539937 Score: 55
Period size: 22 Copynumber: 2.8 Consensus size: 20
9539870 AAATTTATGA
*
9539880 TTAA-AAAAATAAAATTAGT
1 TTAATAAAAATAAAAGTAGT
*
9539899 ATAATAAAAAATAAGAAGTAGTT
1 TTAAT-AAAAATAA-AAGTAG-T
9539922 TTAATAAAAATTAAAA
1 TTAATAAAAA-TAAAA
9539938 ACATAAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
19 3 0.10
21 8 0.26
22 12 0.39
23 8 0.26
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (20 bp):
TTAATAAAAATAAAAGTAGT
Found at i:9546143 original size:12 final size:12
Alignment explanation
Indices: 9546126--9546150 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9546116 TAAAAATGTA
9546126 AAAATCATCAAG
1 AAAATCATCAAG
9546138 AAAATCATCAAG
1 AAAATCATCAAG
9546150 A
1 A
9546151 TCACTTGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:9554247 original size:9 final size:9
Alignment explanation
Indices: 9554223--9554256 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
9554213 TAAAATTCAT
*
9554223 CAAAAATCA
1 CAAAAATCC
*
9554232 CAGAAATCC
1 CAAAAATCC
9554241 CAAAAATCC
1 CAAAAATCC
9554250 CAAAAAT
1 CAAAAAT
9554257 TGGGGCGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.59, C:0.26, G:0.03, T:0.12
Consensus pattern (9 bp):
CAAAAATCC
Found at i:9558855 original size:27 final size:27
Alignment explanation
Indices: 9558825--9559002 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
9558815 ATATTGAGCC
* * * *
9558825 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
9558852 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
9558879 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
9558907 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
9558934 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
9558961 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
9558988 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
9559003 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:9558964 original size:82 final size:81
Alignment explanation
Indices: 9558846--9559001 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
9558836 TGCTATATAA
* *
9558846 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
9558911 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
9558928 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
9558992 CACTTAGTGC
65 CACTTAGTGC
9559002 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:9567364 original size:27 final size:27
Alignment explanation
Indices: 9567334--9567511 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
9567324 ATATTGAGTC
* * * *
9567334 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
9567361 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
9567388 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
9567416 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
9567443 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
9567470 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
9567497 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
9567512 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:9567473 original size:82 final size:81
Alignment explanation
Indices: 9567355--9567510 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
9567345 TGCTATATAA
* *
9567355 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
9567420 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
9567437 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
9567501 CACTTAGTGC
65 CACTTAGTGC
9567511 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:9571066 original size:27 final size:28
Alignment explanation
Indices: 9571029--9571107 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 28
9571019 ACCAGATATT
* *
9571029 GATA-TTGTGGCAGAGCCACTA-CAACA
1 GATATTTGTGGCAGAGCCACCAGAAACA
** *
9571055 GATATTTGTGGCATCGCCACCAGAAATA
1 GATATTTGTGGCAGAGCCACCAGAAACA
9571083 GATATTTGTGGCATG-GCCACCAGAA
1 GATATTTGTGGCA-GAGCCACCAGAA
9571108 TGCTTCCTCC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
26 4 0.09
27 14 0.32
28 26 0.59
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.23
Consensus pattern (28 bp):
GATATTTGTGGCAGAGCCACCAGAAACA
Found at i:9571094 original size:28 final size:28
Alignment explanation
Indices: 9571054--9571107 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
9571044 CCACTACAAC
9571054 AGATATTTGTGGCATCGCCACCAGAAAT
1 AGATATTTGTGGCATCGCCACCAGAAAT
*
9571082 AGATATTTGTGGCATGGCCACCAGAA
1 AGATATTTGTGGCATCGCCACCAGAA
9571108 TGCTTCCTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (28 bp):
AGATATTTGTGGCATCGCCACCAGAAAT
Found at i:9571259 original size:26 final size:27
Alignment explanation
Indices: 9571210--9571273 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 27
9571200 CAAAATTAAC
* *
9571210 CCTAGGGGTATGACGGTCACTTTC-CA
1 CCTAGGGGTATAACGGTAACTTTCACA
* * *
9571236 CCTAGGGGTATAATGGTAATTTTCATA
1 CCTAGGGGTATAACGGTAACTTTCACA
*
9571263 CTTAGGGGTAT
1 CCTAGGGGTAT
9571274 TTTAGTAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
26 20 0.65
27 11 0.35
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (27 bp):
CCTAGGGGTATAACGGTAACTTTCACA
Found at i:9574353 original size:47 final size:48
Alignment explanation
Indices: 9574302--9574467 Score: 218
Period size: 47 Copynumber: 3.5 Consensus size: 48
9574292 GAGGCCAATG
9574302 CATGTCCCAGACAT-GTCTTACACTAGCCCTCGTCTGAATGCTGATTC
1 CATGTCCCAGACATGGTCTTACACTAGCCCTCGTCTGAATGCTGATTC
* * * *
9574349 CATGTCCCTGACATGGTCTTACACT-G-GCTC-TCATAATATGGCTGA-TG
1 CATGTCCCAGACATGGTCTTACACTAGCCCTCGTC-TGA-AT-GCTGATTC
9574396 CATGTCCCAGACAT-GTCTTACACTAGCCCTCGTCTGAATGCTGATTC
1 CATGTCCCAGACATGGTCTTACACTAGCCCTCGTCTGAATGCTGATTC
*
9574443 CATGTCCCTGACATGGTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
9574468 GGCTCTCATA
Statistics
Matches: 101, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
45 2 0.02
46 20 0.20
47 47 0.47
48 30 0.30
49 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.18, T:0.31
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTAGCCCTCGTCTGAATGCTGATTC
Found at i:9574413 original size:94 final size:93
Alignment explanation
Indices: 9574163--9574510 Score: 395
Period size: 94 Copynumber: 3.7 Consensus size: 93
9574153 TGCCGATGCA
* * *
9574163 ATGTCCCAGACATGGTCTTACATTGGATCTCATATATGCATGCTGATGCATGTCCCAGACATGTC
1 ATGTCCCAGACATGGTCTTACACTGGCTCTCATATATG---GCCGATGCATGTCCCAGACATGTC
* ** * *
9574228 TTACACTTGCACAAC-TCT-TA-GCTGA-TGC
63 TTACACTAGC-CCTCGTCTGAATGCTGATTCC
* * * *
9574256 GTGTCCCAGACA-CGTCTTACACTGGCTATCTC-TGTCGA-GGCCAATGCATGTCCCAGACATGT
1 ATGTCCCAGACATGGTCTTACACTGGC--TCTCATAT--ATGGCCGATGCATGTCCCAGACATGT
9574318 CTTACACTAGCCCTCGTCTGAATGCTGATTCC
62 CTTACACTAGCCCTCGTCTGAATGCTGATTCC
* *
9574350 ATGTCCCTGACATGGTCTTACACTGGCTCTCATAATATGGCTGATGCATGTCCCAGACATGTCTT
1 ATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATATGGCCGATGCATGTCCCAGACATGTCTT
9574415 ACACTAGCCCTCGTCTGAATGCTGATTCC
65 ACACTAGCCCTCGTCTGAATGCTGATTCC
* * * *
9574444 ATGTCCCTGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCTAGACATGTCTT
1 ATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATATGGCCGATGCATGTCCCAGACATGTCTT
9574509 AC
65 AC
9574511 TGTAACACCC
Statistics
Matches: 221, Mismatches: 22, Indels: 23
0.83 0.08 0.09
Matches are distributed among these distances:
90 2 0.01
91 34 0.15
92 12 0.05
93 23 0.10
94 135 0.61
95 15 0.07
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (93 bp):
ATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGGCCGATGCATGTCCCAGACATGTCTTA
CACTAGCCCTCGTCTGAATGCTGATTCC
Found at i:9574494 original size:47 final size:46
Alignment explanation
Indices: 9574157--9574510 Score: 190
Period size: 47 Copynumber: 7.5 Consensus size: 46
9574147 ATACATTGCC
* * *
9574157 GATGCAATGTCCCAGACATGGTCTTACATTGGATCTCATATATGCAT-GCT
1 GATGC-ATGTCCCTGACAT-GTCTTACACTGGCTCTCATA-ATG--TGGCT
* * * * * *
9574207 GATGCATGTCCCAGACATGTCTTACACTTG--CACA-ACTCTTAGCT
1 GATGCATGTCCCTGACATGTCTTACACTGGCTCTCATAAT-GTGGCT
* * * * * *
9574251 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCTC-T-GTCGAGGCC
1 GATGCATGTCCCTGACATGTCTTACACTGGC--TCTCATAAT-GTGGCT
* * * * * *
9574298 AATGCATGTCCCAGACATGTCTTACACTAGCCCTCGT-CTGAAT-GCT
1 GATGCATGTCCCTGACATGTCTTACACTGGCTCTCATAATG--TGGCT
* *
9574344 GATTCCATGTCCCTGACATGGTCTTACACTGGCTCTCATAATATGGCT
1 GA-TGCATGTCCCTGACAT-GTCTTACACTGGCTCTCATAATGTGGCT
* * * * *
9574392 GATGCATGTCCCAGACATGTCTTACACTAGCCCTCGT-CTGAAT-GCT
1 GATGCATGTCCCTGACATGTCTTACACTGGCTCTCATAATG--TGGCT
* *
9574438 GATTCCATGTCCCTGACATGGTCTTACACTGGCTCTCATAATGTGGCC
1 GA-TGCATGTCCCTGACAT-GTCTTACACTGGCTCTCATAATGTGGCT
*
9574486 GAAGCATGT-CCTAGACATGTCTTAC
1 GATGCATGTCCCT-GACATGTCTTAC
9574511 TGTAACACCC
Statistics
Matches: 237, Mismatches: 46, Indels: 46
0.72 0.14 0.14
Matches are distributed among these distances:
43 1 0.00
44 31 0.13
45 6 0.03
46 39 0.16
47 86 0.36
48 53 0.22
49 16 0.07
50 5 0.02
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCTGACATGTCTTACACTGGCTCTCATAATGTGGCT
Found at i:9578414 original size:12 final size:12
Alignment explanation
Indices: 9578397--9578421 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9578387 TAAAAATGTA
9578397 AAAATCATCAAG
1 AAAATCATCAAG
9578409 AAAATCATCAAG
1 AAAATCATCAAG
9578421 A
1 A
9578422 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:9583048 original size:6 final size:6
Alignment explanation
Indices: 9583030--9583061 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
9583020 CATCATCTAT
9583030 TCAGAA TTCAGAA TCAGAA TCAGAA TCAGAA T
1 TCAGAA -TCAGAA TCAGAA TCAGAA TCAGAA T
9583062 TACACGAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.22
Consensus pattern (6 bp):
TCAGAA
Found at i:9588015 original size:39 final size:40
Alignment explanation
Indices: 9587907--9588091 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
9587897 TTGAATGATG
* * *
9587907 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
9587946 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
9587987 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
9588026 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
9588065 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
9588092 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:9588043 original size:79 final size:81
Alignment explanation
Indices: 9587907--9588089 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
9587897 TTGAATGATG
* * *
9587907 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
9587971 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
9587986 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
9588048 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
9588066 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
9588090 TGAACGAGGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:9588113 original size:79 final size:79
Alignment explanation
Indices: 9587960--9588124 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
9587950 GGACTAAGAT
* * ** *
9587960 CCGAAGGTATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
*
9588025 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
9588039 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-C
* *
9588102 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
9588118 CCGAAGG
1 CCGAAGG
9588125 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:9596444 original size:40 final size:40
Alignment explanation
Indices: 9596407--9596591 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
9596397 GCTACTCGTT
*
9596407 CAATTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAATTGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
9596447 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
9596487 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTTGCA
1 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
9596526 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAATTGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
9596567 CAA-AGCCTTCGGGACTTAGCCCGGA
1 CAATTGCCTTCGGGACTTAGCCCGGA
9596592 CATCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:9596510 original size:79 final size:81
Alignment explanation
Indices: 9596411--9596591 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 81
9596401 CTCGTTCAAT
* * *
9596411 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCGGAT
1 TGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGAT
* *
9596474 TTAGTAAC-TCGCACAAA
64 ATAGTAACTTAGCACAAA
* * **
9596491 TGCCTTCGGG-CTTAGCCCGGAATTAGTATCTTGCACAAATGCCTTCGGATCTTAGTCCGGATAT
1 TGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATAT
* *
9596555 GGTCACTTAGCACAAA
66 AGTAACTTAGCACAAA
9596571 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAGCCCGGA
9596592 CATCATTCAA
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 53 0.62
80 30 0.35
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (81 bp):
TGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATAT
AGTAACTTAGCACAAA
Found at i:9604368 original size:79 final size:80
Alignment explanation
Indices: 9604294--9604450 Score: 194
Period size: 79 Copynumber: 2.0 Consensus size: 80
9604284 AGCCCGGTTA
* * *
9604294 TAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCATC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCACAAA-GCCATC
9604357 -GGGCTTAGCCCGGAAT
64 GGGGCTTAGCCCGGAAT
* ** * * *
9604373 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCATCGG
9604438 GGCTTAGCCCGGA
66 GGCTTAGCCCGGA
9604451 CATCATTCAA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
78 3 0.05
79 41 0.62
80 22 0.33
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCATCGG
GGCTTAGCCCGGAAT
Found at i:9604383 original size:39 final size:40
Alignment explanation
Indices: 9604266--9604397 Score: 160
Period size: 40 Copynumber: 3.3 Consensus size: 40
9604256 GCTACTCGTT
* * * *
9604266 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCGCA
* *
9604306 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
* * *
9604346 CAAATGCCATCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
9604385 CAAATGCCTTCGG
1 CAAATGCCTTCGG
9604398 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 34 0.42
40 45 0.56
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:9606441 original size:40 final size:40
Alignment explanation
Indices: 9606396--9606473 Score: 140
Period size: 40 Copynumber: 1.9 Consensus size: 40
9606386 TAGCCGGATA
9606396 TAGCCACTAGCTCAAATGC-CTTCGGGACTTAGCCCGGTAT
1 TAGCCACTAGCTCAAATGCTC-TCGGGACTTAGCCCGGTAT
9606436 TAGCCACTAGCTCAAATGCTCTCGGGACTTAGCCCGGT
1 TAGCCACTAGCTCAAATGCTCTCGGGACTTAGCCCGGT
9606474 TATCATCCGA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 36 0.97
41 1 0.03
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (40 bp):
TAGCCACTAGCTCAAATGCTCTCGGGACTTAGCCCGGTAT
Done.