Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 44 of 279
Found at i:14802361 original size:21 final size:22
Alignment explanation
Indices: 14802330--14802370 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
14802320 TATTTAAAAT
14802330 GGTTTTATTAT-TATTTACTTTA
1 GGTTTTATTATATA-TTACTTTA
14802352 GGTTTT-TTATATATTACTT
1 GGTTTTATTATATATTACTT
14802371 ATTTTATACT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.22, C:0.05, G:0.10, T:0.63
Consensus pattern (22 bp):
GGTTTTATTATATATTACTTTA
Found at i:14802527 original size:16 final size:15
Alignment explanation
Indices: 14802506--14802535 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14802496 TCATTTTAAA
14802506 ATTTATTTTACATTTT
1 ATTTATTTTA-ATTTT
14802522 ATTTATTTTAATTT
1 ATTTATTTTAATTT
14802536 GCTTTATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
ATTTATTTTAATTTT
Found at i:14803040 original size:103 final size:103
Alignment explanation
Indices: 14802861--14803158 Score: 506
Period size: 103 Copynumber: 2.9 Consensus size: 103
14802851 AAAAAGAGAA
* * * * *
14802861 CTTTCTAAATAAGACAATATTTTGCGTTTTAGGAAATTCGAGGAATAGTGCCCTAACTTACGGGG
1 CTTTCTAAATAAGGCAATATTTCGCGTTTTAGGAAATTCGAGGAATCGTGACCTAACTTACAGGG
*
14802926 CTTCGATTTTTCTCGTTAAACTTAAATAGCCAAGTATC
66 CTTCGATTTTTCTCGTTAAACCTAAATAGCCAAGTATC
*
14802964 CTTTCTAAATAAGGCAATATTTCGCGTTTTAGGAAATTCGAGGAATCGTGTCCTAACTTACAGGG
1 CTTTCTAAATAAGGCAATATTTCGCGTTTTAGGAAATTCGAGGAATCGTGACCTAACTTACAGGG
14803029 CTTCGATTTTTCTCGTTAAACCTAAATAGCCAAGTATC
66 CTTCGATTTTTCTCGTTAAACCTAAATAGCCAAGTATC
* *
14803067 CTTTCTAAATAAGGCAATATTACGCATTTTAGGAAATTCGAGGAATCGTGACCTAACTTACAGGG
1 CTTTCTAAATAAGGCAATATTTCGCGTTTTAGGAAATTCGAGGAATCGTGACCTAACTTACAGGG
14803132 CTTCGATTTTTCTCGATTAAACCTAAA
66 CTTCGATTTTTCTCG-TTAAACCTAAA
14803159 GTATCCTTTT
Statistics
Matches: 185, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
103 174 0.94
104 11 0.06
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (103 bp):
CTTTCTAAATAAGGCAATATTTCGCGTTTTAGGAAATTCGAGGAATCGTGACCTAACTTACAGGG
CTTCGATTTTTCTCGTTAAACCTAAATAGCCAAGTATC
Found at i:14805965 original size:3 final size:3
Alignment explanation
Indices: 14805959--14805987 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14805949 TACATAATAT
14805959 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14805988 TTAGACGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14806636 original size:25 final size:24
Alignment explanation
Indices: 14806608--14806664 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
14806598 TATATTTATA
*
14806608 TATATATATTTATTTAAACTGTCTT
1 TATATATATTTATTTAAACTCT-TT
*
14806633 TATATATTATTTATTTTAACTCTTT
1 TATATA-TATTTATTTAAACTCTTT
14806658 TATATAT
1 TATATAT
14806665 TTCTTTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 1 0.03
25 14 0.48
26 14 0.48
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.60
Consensus pattern (24 bp):
TATATATATTTATTTAAACTCTTT
Found at i:14806665 original size:25 final size:26
Alignment explanation
Indices: 14806606--14806665 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
14806596 GTTATATTTA
*
14806606 TATATATATATTTATTTAAACTGTCTT
1 TATATAT-TATTTATTTAAACTCTCTT
*
14806633 TATATATTATTTATTTTAACTCT-TT
1 TATATATTATTTATTTAAACTCTCTT
14806658 TATATATT
1 TATATATT
14806666 TCTTTTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 10 0.32
26 14 0.45
27 7 0.23
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.60
Consensus pattern (26 bp):
TATATATTATTTATTTAAACTCTCTT
Found at i:14810185 original size:31 final size:32
Alignment explanation
Indices: 14810147--14810209 Score: 110
Period size: 31 Copynumber: 2.0 Consensus size: 32
14810137 CCCAGCTCTT
14810147 TTCTTCTTCTTTTTTGTGCAAGG-AAAAGATG
1 TTCTTCTTCTTTTTTGTGCAAGGAAAAAGATG
*
14810178 TTCTTCTTCTTTTTTGTGTAAGGAAAAAGATG
1 TTCTTCTTCTTTTTTGTGCAAGGAAAAAGATG
14810210 AGTTACATCA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 22 0.73
32 8 0.27
ACGTcount: A:0.24, C:0.11, G:0.19, T:0.46
Consensus pattern (32 bp):
TTCTTCTTCTTTTTTGTGCAAGGAAAAAGATG
Found at i:14812838 original size:9 final size:9
Alignment explanation
Indices: 14812815--14812898 Score: 68
Period size: 9 Copynumber: 9.4 Consensus size: 9
14812805 TAATATATTT
14812815 TAAAAAGTTA
1 TAAAAA-TTA
14812825 T-AAAATTA
1 TAAAAATTA
*
14812833 TAAAAA-AA
1 TAAAAATTA
*
14812841 TTAAAATTA
1 TAAAAATTA
14812850 TAAAAATGT-
1 TAAAAAT-TA
*
14812859 TAAAATTTA
1 TAAAAATTA
14812868 T-AAAATTA
1 TAAAAATTA
*
14812876 TTAAAAATCA
1 -TAAAAATTA
*
14812886 TAAAAAATA
1 TAAAAATTA
14812895 TAAA
1 TAAA
14812899 TTTATATAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
8 17 0.29
9 34 0.58
10 8 0.14
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:14812845 original size:17 final size:17
Alignment explanation
Indices: 14812825--14812912 Score: 79
Period size: 17 Copynumber: 5.0 Consensus size: 17
14812815 TAAAAAGTTA
14812825 TAAAATTATAAAAAAAT
1 TAAAATTATAAAAAAAT
**
14812842 TAAAATTATAAAAATGT
1 TAAAATTATAAAAAAAT
**
14812859 TAAAATTTATAAAATTAT
1 TAAAA-TTATAAAAAAAT
*
14812877 TAAAAATCAT-AAAAAAT
1 T-AAAATTATAAAAAAAT
*
14812894 ATAAATTTATATAAAAAAT
1 -TAAAATTATA-AAAAAAT
14812913 ATTATTTTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
17 31 0.54
18 15 0.26
19 11 0.19
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:14812869 original size:35 final size:35
Alignment explanation
Indices: 14812801--14812912 Score: 111
Period size: 35 Copynumber: 3.1 Consensus size: 35
14812791 ATGTTTTTTT
* *
14812801 AAATTAATATATTTTAAAAAGTTATAAAATTATAAAA
1 AAATTAA-A-ATTATAAAAAGTTATAAATTTATAAAA
14812838 AAATTAAAATTATAAAAATGTTA-AAATTTATAAAA
1 AAATTAAAATTATAAAAA-GTTATAAATTTATAAAA
** * *
14812873 TTATTAAAAATCATAAAAA-ATATAAATTTATATAAA
1 AAATT-AAAATTATAAAAAGTTATAAATTTATA-AAA
14812909 AAAT
1 AAAT
14812913 ATTATTTTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
34 2 0.03
35 32 0.51
36 22 0.35
37 7 0.11
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.36
Consensus pattern (35 bp):
AAATTAAAATTATAAAAAGTTATAAATTTATAAAA
Found at i:14812888 original size:18 final size:18
Alignment explanation
Indices: 14812826--14812891 Score: 80
Period size: 18 Copynumber: 3.7 Consensus size: 18
14812816 AAAAAGTTAT
*
14812826 AAAATTATAAAAAAATT-
1 AAAATTATAAAAATATTA
*
14812843 AAAATTATAAAAATGTTA
1 AAAATTATAAAAATATTA
* *
14812861 AAATTTATAAAATTATTA
1 AAAATTATAAAAATATTA
*
14812879 AAAATCATAAAAA
1 AAAATTATAAAAA
14812892 ATATAAATTT
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
17 15 0.38
18 25 0.62
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (18 bp):
AAAATTATAAAAATATTA
Found at i:14812889 original size:27 final size:27
Alignment explanation
Indices: 14812826--14812910 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 27
14812816 AAAAAGTTAT
*
14812826 AAAATTATAAAAAA-ATTAAAATTA-TA
1 AAAATCATAAAAAATA-TAAAATTATTA
** **
14812852 AAAATGTTAAAATTTATAAAATTATTA
1 AAAATCATAAAAAATATAAAATTATTA
*
14812879 AAAATCATAAAAAATATAAATTTATATA
1 AAAATCATAAAAAATATAAAATTAT-TA
14812907 AAAA
1 AAAA
14812911 ATATTATTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
26 18 0.38
27 23 0.49
28 6 0.13
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (27 bp):
AAAATCATAAAAAATATAAAATTATTA
Found at i:14823217 original size:21 final size:23
Alignment explanation
Indices: 14823183--14823224 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
14823173 GATGGTTCGA
14823183 GATTCGTGCTTTCCAGTTGATTT
1 GATTCGTGCTTTCCAGTTGATTT
*
14823206 GATTC-TG-TTTCCATTTGAT
1 GATTCGTGCTTTCCAGTTGAT
14823225 GAGTTTGGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 2 0.11
23 5 0.28
ACGTcount: A:0.14, C:0.17, G:0.19, T:0.50
Consensus pattern (23 bp):
GATTCGTGCTTTCCAGTTGATTT
Found at i:14830581 original size:321 final size:321
Alignment explanation
Indices: 14829987--14830628 Score: 1029
Period size: 321 Copynumber: 2.0 Consensus size: 321
14829977 TTTTCTCGGC
* * * *
14829987 TCGGGTTGCACTGAAACTGGAGCTTCTGTTAGCAATGTCTTTAATTTCTCGAAACTCTCCTGACA
1 TCGGGTTGCACTAAAACTAGAGCTTCTGTTAGCAATGTCCTTAATTTCTCGAAACTCTCCTGAAA
14830052 TTTTTCCGACCAGTCAAACTTAACATCTTTTTGTAGCAACCTCGTCAAGGGAGTTGCAATCATAG
66 TTTTTCCGACCAGTCAAACTTAACATCTTTTTGTAGCAACCTCGTCAAGGGAGTTGCAATCATAG
14830117 AAACACCCTTTACAAAGCGTTGGTAGTAACTGACTAAGTCCAAGAAGCTTCTAACCCCAGTTACA
131 AAACACCCTTTACAAAGCGTTGGTAGTAACTGACTAAGTCCAAGAAGCTTCTAACCCCAGTTACA
* *
14830182 TTATTTGGCAGCTTCCACTCGACAATAGCAGAAATCTTATTTGGATTAACTCGAATGCCATCACC
196 TTATTTAGCAGCTTCCACTCGACAATAGCAGAAATCTTATTTGGATCAACTCGAATGCCATCACC
*
14830247 CGACACCATGTGACCCAAGAACCCGACCTCTCAAAGCCAAAATTCACTT-TGGCTGAACTTA
261 CGACACCATGTGACCCAAGAACCCAACCTCTCAAAGCCAAAATTCACTTCT-GCTGAACTTA
* * * * *
14830308 TCGGGTTGCACTAAAATTAGAGCTTCTGTTGGGAATGTCCTTAATTTCTCGAAACTTTGCTGAAA
1 TCGGGTTGCACTAAAACTAGAGCTTCTGTTAGCAATGTCCTTAATTTCTCGAAACTCTCCTGAAA
* *
14830373 TTTTTCTGACCAGTCAAACTTAACATCTTTTTGTAGCAACCTCGTCAAGGGAGTTGCTATCATAG
66 TTTTTCCGACCAGTCAAACTTAACATCTTTTTGTAGCAACCTCGTCAAGGGAGTTGCAATCATAG
* * *
14830438 AAA-ATCCTTTTACAAAGCGTTGGTAGTAACTGTCTAAGTCCAAGAAGCTTCTAACCTCAGTTAC
131 AAACA-CCCTTTACAAAGCGTTGGTAGTAACTGACTAAGTCCAAGAAGCTTCTAACCCCAGTTAC
* *
14830502 ATTATTTAGCGGCTTCCACTCGACAATAGCAGAAATCTTATTTGGATCAACTCGGATGCCATCAC
195 ATTATTTAGCAGCTTCCACTCGACAATAGCAGAAATCTTATTTGGATCAACTCGAATGCCATCAC
** * *
14830567 CC-AGCATTATGTGACCTAAGAACCCAACCTCTCGAAGCCAAAATTCACTTCTGCTGAACTTA
260 CCGA-CACCATGTGACCCAAGAACCCAACCTCTCAAAGCCAAAATTCACTTCTGCTGAACTTA
14830629 GCATATAATT
Statistics
Matches: 295, Mismatches: 23, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
320 2 0.01
321 292 0.99
322 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (321 bp):
TCGGGTTGCACTAAAACTAGAGCTTCTGTTAGCAATGTCCTTAATTTCTCGAAACTCTCCTGAAA
TTTTTCCGACCAGTCAAACTTAACATCTTTTTGTAGCAACCTCGTCAAGGGAGTTGCAATCATAG
AAACACCCTTTACAAAGCGTTGGTAGTAACTGACTAAGTCCAAGAAGCTTCTAACCCCAGTTACA
TTATTTAGCAGCTTCCACTCGACAATAGCAGAAATCTTATTTGGATCAACTCGAATGCCATCACC
CGACACCATGTGACCCAAGAACCCAACCTCTCAAAGCCAAAATTCACTTCTGCTGAACTTA
Found at i:14844579 original size:108 final size:108
Alignment explanation
Indices: 14844390--14844823 Score: 850
Period size: 108 Copynumber: 4.0 Consensus size: 108
14844380 ACCACTGATA
14844390 AGCTGTGTCCCTCAGAAGTGATACGACACATTTTAAACACTCAGTCGGTGTGCAAGAAAGCTCAT
1 AGCTGTGTCCCTCAGAAGTGATACGACACATTTTAAACACTCAGTCGGTGTGCAAGAAAGCTCAT
14844455 CAAATACCCGAAGCATATTTTCAAGCCAAAATTTGGCTTTCTC
66 CAAATACCCGAAGCATATTTTCAAGCCAAAATTTGGCTTTCTC
14844498 AGCTGTGTCCCTCAGAAGTGATACGACACATTTTAAACACTCAGTCGGTGTGCAAGAAAGCTCAT
1 AGCTGTGTCCCTCAGAAGTGATACGACACATTTTAAACACTCAGTCGGTGTGCAAGAAAGCTCAT
14844563 CAAATACCCGAAGCATATTTTCAAGCCAAAATTTGGCTTTCTC
66 CAAATACCCGAAGCATATTTTCAAGCCAAAATTTGGCTTTCTC
14844606 AGCTGTGTCCCTCAGAAGTGATACGACACATTTTAAACACTCAGTCGGTGTGCAAGAAAGCTCAT
1 AGCTGTGTCCCTCAGAAGTGATACGACACATTTTAAACACTCAGTCGGTGTGCAAGAAAGCTCAT
*
14844671 CAAATACCCGAATCATATTTTCAAGCCAAAATTTGGCTTTCTC
66 CAAATACCCGAAGCATATTTTCAAGCCAAAATTTGGCTTTCTC
14844714 AGCTGTGTCCCTCAGAAGTGATACGACACATTTTAAACACTCAGTCGGTGTGCAAGAAAGCTCAT
1 AGCTGTGTCCCTCAGAAGTGATACGACACATTTTAAACACTCAGTCGGTGTGCAAGAAAGCTCAT
*
14844779 CAAATACCCGAATCATATTTTCAAGCCAAAATTTGGCTTTCTC
66 CAAATACCCGAAGCATATTTTCAAGCCAAAATTTGGCTTTCTC
14844822 AG
1 AG
14844824 GATTGTCGTC
Statistics
Matches: 325, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 325 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (108 bp):
AGCTGTGTCCCTCAGAAGTGATACGACACATTTTAAACACTCAGTCGGTGTGCAAGAAAGCTCAT
CAAATACCCGAAGCATATTTTCAAGCCAAAATTTGGCTTTCTC
Found at i:14850488 original size:39 final size:40
Alignment explanation
Indices: 14850393--14850654 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
14850383 TTGAATGATG
*
14850393 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
14850431 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
14850472 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
14850511 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
14850550 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
14850589 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
14850628 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
14850655 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:14858514 original size:39 final size:40
Alignment explanation
Indices: 14858419--14858680 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
14858409 TTGAATGATG
*
14858419 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
14858457 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
14858498 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
14858537 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
14858576 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
14858615 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
14858654 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
14858681 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:14864175 original size:31 final size:32
Alignment explanation
Indices: 14864140--14864219 Score: 153
Period size: 32 Copynumber: 2.5 Consensus size: 32
14864130 AGGAAAGTAA
14864140 TTTTTATAAAATTTTAT-AAAAAATATGTATC
1 TTTTTATAAAATTTTATAAAAAAATATGTATC
14864171 TTTTTATAAAATTTTATAAAAAAATATGTATC
1 TTTTTATAAAATTTTATAAAAAAATATGTATC
14864203 TTTTTATAAAATTTTAT
1 TTTTTATAAAATTTTAT
14864220 GGTTTTTGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
31 17 0.35
32 31 0.65
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (32 bp):
TTTTTATAAAATTTTATAAAAAAATATGTATC
Found at i:14865844 original size:40 final size:40
Alignment explanation
Indices: 14865766--14865989 Score: 292
Period size: 40 Copynumber: 5.5 Consensus size: 40
14865756 ACCCAAGTAT
* *
14865766 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
14865805 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
14865845 CGTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
14865885 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
14865928 CTTCGGTACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
14865968 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
14865990 CATCCGAATA
Statistics
Matches: 162, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 12 0.07
40 114 0.70
41 1 0.01
43 35 0.22
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:14865965 original size:83 final size:80
Alignment explanation
Indices: 14865766--14865989 Score: 299
Period size: 83 Copynumber: 2.8 Consensus size: 80
14865756 ACCCAAGTAT
* * * *
14865766 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
14865830 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* * *
14865845 CGTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
14865909 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* *
14865928 CTTCGGTACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
14865990 CATCCGAATA
Statistics
Matches: 126, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 12 0.10
80 49 0.39
83 65 0.52
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:14870136 original size:21 final size:21
Alignment explanation
Indices: 14870112--14870164 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
14870102 ATTTATTTCT
14870112 TTAGTTACTT-AGTTTAAAATC
1 TTAGTT-CTTAAGTTTAAAATC
* *
14870133 TTAGTTTTTAATTTTAAAATC
1 TTAGTTCTTAAGTTTAAAATC
*
14870154 TTAGTTTTTAA
1 TTAGTTCTTAA
14870165 TCACCCTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 2 0.07
21 27 0.93
ACGTcount: A:0.32, C:0.06, G:0.08, T:0.55
Consensus pattern (21 bp):
TTAGTTCTTAAGTTTAAAATC
Found at i:14870165 original size:21 final size:21
Alignment explanation
Indices: 14870124--14870165 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
14870114 AGTTACTTAG
14870124 TTTAAAATCTTAGTTTTTAAT
1 TTTAAAATCTTAGTTTTTAAT
14870145 TTTAAAATCTTAGTTTTTAAT
1 TTTAAAATCTTAGTTTTTAAT
14870166 CACCCTCTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (21 bp):
TTTAAAATCTTAGTTTTTAAT
Found at i:14879466 original size:47 final size:47
Alignment explanation
Indices: 14879346--14880402 Score: 1730
Period size: 47 Copynumber: 22.6 Consensus size: 47
14879336 CCCTTCGGGA
* * * * * *
14879346 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14879393 CCTGTCACATATATACACTTT--CA-TCA-C-C-TCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14879434 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14879481 CTTATCACATATATACACTGTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14879528 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14879575 CTTATCACATATATACACTGTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14879622 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14879669 CTTATCACATATATACACTGTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14879716 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14879763 CTTATCACATATATACACTGTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14879810 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14879857 CTTATCACATATATACACTGTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14879904 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14879951 CTTATCACATATATACACTGTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14879998 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14880045 CTTATCACATATATACACTGTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14880092 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14880139 CTTATCACATATATACACTGTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14880186 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14880233 CTTATCACATATATACACTGTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14880280 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14880327 CTTATCACATATATACACTGTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14880374 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
14880403 TATTCAAATA
Statistics
Matches: 937, Mismatches: 65, Indels: 14
0.92 0.06 0.01
Matches are distributed among these distances:
41 29 0.03
42 1 0.00
43 3 0.00
44 5 0.01
45 3 0.00
46 1 0.00
47 877 0.94
49 18 0.02
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14879547 original size:94 final size:94
Alignment explanation
Indices: 14879346--14880402 Score: 1973
Period size: 94 Copynumber: 11.3 Consensus size: 94
14879336 CCCTTCGGGA
* * * * * *
14879346 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
14879411 --T----TTCATCACCTCGGCCATTAGGC
66 TGTCACATTCATCACATCGGCCATTAGGC
* *
14879434 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
14879499 TGTCACATTCATCACATCGGCCATTAGGC
66 TGTCACATTCATCACATCGGCCATTAGGC
14879528 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
14879593 TGTCACATTCATCACATCGGCCATTAGGC
66 TGTCACATTCATCACATCGGCCATTAGGC
14879622 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
14879687 TGTCACATTCATCACATCGGCCATTAGGC
66 TGTCACATTCATCACATCGGCCATTAGGC
14879716 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
14879781 TGTCACATTCATCACATCGGCCATTAGGC
66 TGTCACATTCATCACATCGGCCATTAGGC
14879810 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
14879875 TGTCACATTCATCACATCGGCCATTAGGC
66 TGTCACATTCATCACATCGGCCATTAGGC
14879904 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
14879969 TGTCACATTCATCACATCGGCCATTAGGC
66 TGTCACATTCATCACATCGGCCATTAGGC
14879998 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
14880063 TGTCACATTCATCACATCGGCCATTAGGC
66 TGTCACATTCATCACATCGGCCATTAGGC
14880092 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
14880157 TGTCACATTCATCACATCGGCCATTAGGC
66 TGTCACATTCATCACATCGGCCATTAGGC
14880186 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
14880251 TGTCACATTCATCACATCGGCCATTAGGC
66 TGTCACATTCATCACATCGGCCATTAGGC
14880280 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
14880345 TGTCACATTCATCACATCGGCCATTAGGC
66 TGTCACATTCATCACATCGGCCATTAGGC
14880374 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
14880403 TATTCAAATA
Statistics
Matches: 950, Mismatches: 11, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
88 57 0.06
90 1 0.00
94 873 0.92
96 19 0.02
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TGTCACATTCATCACATCGGCCATTAGGC
Found at i:14885509 original size:36 final size:36
Alignment explanation
Indices: 14885375--14885496 Score: 99
Period size: 36 Copynumber: 3.4 Consensus size: 36
14885365 AATGGAGTAG
* *
14885375 TGATCATAAATCAACGAACTCAAAAT-AAATTGTTCA
1 TGATCATAAATCAACGAACTCAAAATGAACTAG-TCA
* * **
14885411 TGATCATAAAT-AAGCAAAAT-TTAAT-ACTACTAGTCA
1 TGATCATAAATCAA-CGAACTCAAAATGA--ACTAGTCA
* *
14885447 TGATCATAAATTAACGAACTCAAAATGAACTATTCA
1 TGATCATAAATCAACGAACTCAAAATGAACTAGTCA
*
14885483 TGATCTTAAATCAA
1 TGATCATAAATCAA
14885497 TTAACTTAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
35 6 0.09
36 52 0.78
37 8 0.12
38 1 0.01
ACGTcount: A:0.47, C:0.16, G:0.08, T:0.30
Consensus pattern (36 bp):
TGATCATAAATCAACGAACTCAAAATGAACTAGTCA
Found at i:14885653 original size:134 final size:134
Alignment explanation
Indices: 14885448--14885822 Score: 432
Period size: 134 Copynumber: 2.8 Consensus size: 134
14885438 TACTAGTCAT
* ** * * * * * * ** *
14885448 GATCATAAATTAACGAACTCAAAATGAACTATTCATGATCTTAAATCAATTAACTTAAAATGTGA
1 GATCATAAATCAATAAAATCAAAATGAACTGTTCATGATCGTAAATTAGTGAACTTAAGCTATGA
* ** * *
14885513 CCGTAAATCAACAAGCTTTAATAATACTAGTCGTGATTGTAAATCAGCGAA-TTGTTTGAATGGA
66 TCGTAAATCAACAAGCTTTAATAATACTAGTCGTGATCATAAATCAACGAACAT-TTTGAAT-GA
*
14885577 GTT-GC
129 ATTAGC
* * * *
14885582 GATCGTAAATCAGTAAAATCAAAATGAATTGTTCATGATCGTAATTTAGTGAACTTAAGCTATGA
1 GATCATAAATCAATAAAATCAAAATGAACTGTTCATGATCGTAAATTAGTGAACTTAAGCTATGA
* * *
14885647 TTGTAAATCAACAAGCTTTAATAATACCAGT-GATAATCATAAATCAACGAACATTTTGAATGAA
66 TCGTAAATCAACAAGCTTTAATAATACTAGTCG-TGATCATAAATCAACGAACATTTTGAATGAA
*
14885711 TTAGT
130 TTAGC
* * *
14885716 GATCATAAATCAATGAACTCAAAATGAACTGTTCATGATTGTAAATTAGTGAACTTAAGCTATGA
1 GATCATAAATCAATAAAATCAAAATGAACTGTTCATGATCGTAAATTAGTGAACTTAAGCTATGA
*
14885781 TCGTAAATCAGCAAGCTTTAATAATACTAGTCGTGATCATAA
66 TCGTAAATCAACAAGCTTTAATAATACTAGTCGTGATCATAA
14885823 TTAGCGAATT
Statistics
Matches: 200, Mismatches: 37, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
133 5 0.03
134 193 0.96
135 2 0.01
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (134 bp):
GATCATAAATCAATAAAATCAAAATGAACTGTTCATGATCGTAAATTAGTGAACTTAAGCTATGA
TCGTAAATCAACAAGCTTTAATAATACTAGTCGTGATCATAAATCAACGAACATTTTGAATGAAT
TAGC
Found at i:14885736 original size:340 final size:342
Alignment explanation
Indices: 14885128--14885754 Score: 774
Period size: 340 Copynumber: 1.8 Consensus size: 342
14885118 TAAACCCAAC
*** * **
14885128 ATGAACTATTCATGATCGTAAATCAATGAAATTAGGTTGTGATCGTAAATCAGTAAGCTTTAATA
1 ATGAACTATTCATGATCGTAAATCAATGAAATTAAAATGTGACCGTAAATCAACAAGCTTTAATA
* * * ** *
14885193 TTATTATTAGTTGTGATCGTAAATCAACGAACTATTTGAATGAAGTTGTGATTTTAAATCTGCAA
66 -TATTACTAGTCGTGATCGTAAATCAACGAACTATTTGAATGAAGTTGCGATCGTAAATCAGCAA
* * * * * * * *
14885258 ACTTAAAACAAACTGTTGATGATCGTAAATCAATGAGCTTAAGTTGTGATCATACATCAACAAGT
130 AATCAAAACAAACTGTTCATGATCGTAAATCAATGAACTTAAGCTATGATCATAAATCAACAAGC
* * * ** * *
14885323 TTTAATAATGCCAGTCTTGATTGTAAATCAATGAACTATTTGAATGGAGTAGTGATCATAAATCA
195 TTTAATAATACCAGTCATAATCATAAATCAACGAACTATTTGAATGAAGTAGTGATCATAAATCA
*
14885388 ACGAACTCAAAATAAATTGTTCATGATCATAAATAAGCAAAATTTAATACTACTAGTCATGATCA
260 ACGAACTCAAAATAAACTGTTCATGATCATAAATAAGCAAAATTTAATACTACTAGTCATGATCA
14885453 TAAATTAACGAACTCAAA
325 TAAATTAACGAACTCAAA
* * *
14885471 ATGAACTATTCATGATCTTAAATCAATTAACTTAAAATGTGACCGTAAATCAACAAGCTTTAATA
1 ATGAACTATTCATGATCGTAAATCAATGAAATTAAAATGTGACCGTAAATCAACAAGCTTTAATA
* * * * * *
14885536 -A-TACTAGTCGTGATTGTAAATCAGCGAATTGTTTGAATGGAGTTGCGATCGTAAATCAGTAAA
66 TATTACTAGTCGTGATCGTAAATCAACGAACTATTTGAATGAAGTTGCGATCGTAAATCAGCAAA
** * * * * **
14885599 ATCAAAATGAATTGTTCATGATCGTAATTTAGTGAACTTAAGCTATGATTGTAAATCAACAAGCT
131 ATCAAAACAAACTGTTCATGATCGTAAATCAATGAACTTAAGCTATGATCATAAATCAACAAGCT
* *
14885664 TTAATAATACCAGTGATAATCATAAATCAACGAAC-ATTTTGAATGAATTAGTGATCATAAATCA
196 TTAATAATACCAGTCATAATCATAAATCAACGAACTA-TTTGAATGAAGTAGTGATCATAAATCA
* *
14885728 ATGAACTCAAAATGAACTGTTCATGAT
260 ACGAACTCAAAATAAACTGTTCATGAT
14885755 TGTAAATTAG
Statistics
Matches: 234, Mismatches: 49, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
339 1 0.00
340 176 0.75
341 1 0.00
343 56 0.24
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.33
Consensus pattern (342 bp):
ATGAACTATTCATGATCGTAAATCAATGAAATTAAAATGTGACCGTAAATCAACAAGCTTTAATA
TATTACTAGTCGTGATCGTAAATCAACGAACTATTTGAATGAAGTTGCGATCGTAAATCAGCAAA
ATCAAAACAAACTGTTCATGATCGTAAATCAATGAACTTAAGCTATGATCATAAATCAACAAGCT
TTAATAATACCAGTCATAATCATAAATCAACGAACTATTTGAATGAAGTAGTGATCATAAATCAA
CGAACTCAAAATAAACTGTTCATGATCATAAATAAGCAAAATTTAATACTACTAGTCATGATCAT
AAATTAACGAACTCAAA
Found at i:14901052 original size:31 final size:31
Alignment explanation
Indices: 14901009--14901087 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
14900999 TTTAACGGTT
*
14901009 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCTGAAGCCTTTTCATAAATCATATC
*
14901040 ACTGGGCTGAAGCCTTTTCATAAATCATTTC
1 ACTGGGCTGAAGCCTTTTCATAAATCATATC
14901071 ACTGGGCTGAAGCCTTT
1 ACTGGGCTGAAGCCTTT
14901088 ACTGTAAACG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (31 bp):
ACTGGGCTGAAGCCTTTTCATAAATCATATC
Found at i:14901159 original size:42 final size:42
Alignment explanation
Indices: 14901111--14901202 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
14901101 TGGCCCATAG
* ** *
14901111 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
* *
14901153 GGCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
14901195 GCCCATTT
1 GCCCATTT
14901203 GGGGAGACTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:14901419 original size:26 final size:26
Alignment explanation
Indices: 14901335--14901470 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
14901325 CTGAAGGCCT
14901335 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
* **
14901359 AACCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
14901384 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
** *
14901410 AGCCCTTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
14901436 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
14901462 AGCCCTTTT
1 AGCCCTTTT
14901471 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
23 5 0.05
24 4 0.04
25 32 0.33
26 56 0.58
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:14901455 original size:52 final size:51
Alignment explanation
Indices: 14901335--14901470 Score: 215
Period size: 52 Copynumber: 2.7 Consensus size: 51
14901325 CTGAAGGCCT
* *
14901335 AGCCTCTTTT-AAT-AACTGGGGCA-AAACCCTTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAA
14901384 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCA-A
14901436 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
14901471 GCACTTCCTC
Statistics
Matches: 81, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 10 0.12
51 23 0.28
52 36 0.44
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTAGGGCAA
Found at i:14901533 original size:33 final size:33
Alignment explanation
Indices: 14901491--14901560 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
14901481 CATCCATATA
14901491 AAAACCCAACCCAATGCAACATGTCATGTATGC
1 AAAACCCAACCCAATGCAACATGTCATGTATGC
14901524 AAAACCCAACCCAATGCAACATGTCATGTATGC
1 AAAACCCAACCCAATGCAACATGTCATGTATGC
14901557 AAAA
1 AAAA
14901561 TGCCATGCCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.43, C:0.29, G:0.11, T:0.17
Consensus pattern (33 bp):
AAAACCCAACCCAATGCAACATGTCATGTATGC
Found at i:14902368 original size:27 final size:27
Alignment explanation
Indices: 14902306--14902383 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
14902296 GGGCATATTC
14902306 GTCATTTTACCATACAGGGGTATTAAG
1 GTCATTTTACCATACAGGGGTATTAAG
* * *
14902333 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTAAG
* *
14902360 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
14902384 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 2 0.05
27 39 0.93
28 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTAAG
Found at i:14902454 original size:27 final size:27
Alignment explanation
Indices: 14902401--14902639 Score: 135
Period size: 27 Copynumber: 8.8 Consensus size: 27
14902391 TTTCATCCTA
* * * *
14902401 CAAGGGTGTTTTAGTAAATCTACAAAC
1 CAAGGGTATTTCAGTAATTTTACAAAC
**
14902428 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTACAAAC
** * **
14902455 CAATAGTATTTCTA-TAATTTTTAGGAAGT
1 CAAGGGTATTTC-AGTAA-TTTTA-CAAAC
* * * *
14902484 CAAGGGTATTTCTGTAACTTTATAAAT
1 CAAGGGTATTTCAGTAATTTTACAAAC
* ** * *
14902511 CAAGAGTATTTTGGTAATTTTACAGAT
1 CAAGGGTATTTCAGTAATTTTACAAAC
** * *
14902538 TGAGGGTATTT-TGATAATTTCACAAAC
1 CAAGGGTATTTCAG-TAATTTTACAAAC
14902565 C-AGTGGTATTTTC-GTAATTTTACAAAC
1 CAAG-GGTA-TTTCAGTAATTTTACAAAC
* * **
14902592 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCAGTAATTTTACAAAC
*
14902619 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTCAGTAATTTT
14902640 GTAAATTGAG
Statistics
Matches: 163, Mismatches: 39, Indels: 20
0.73 0.18 0.09
Matches are distributed among these distances:
26 6 0.04
27 128 0.79
28 14 0.09
29 15 0.09
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTACAAAC
Found at i:14902574 original size:54 final size:54
Alignment explanation
Indices: 14902486--14902653 Score: 173
Period size: 54 Copynumber: 3.1 Consensus size: 54
14902476 TAGGAAGTCA
* * * * *
14902486 AGGGTATTTCTG-TAACTTT-ATAAATCAAGAGTATTTTGGTAATTTTACAGATTG
1 AGGGTATTT-TGATAA-TTTCACAAACCAAGGGTATTTTAGTAATTTTACAAATTG
* *
14902540 AGGGTATTTTGATAATTTCACAAACC-AGTGGTATTTTCGTAATTTTACAAACT-
1 AGGGTATTTTGATAATTTCACAAACCAAG-GGTATTTTAGTAATTTTACAAATTG
* * **
14902593 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATTG
1 A-GGGTATTTTGATAATTTCACAAACCAAGGGTATTTTAGTAATTTTACAAATTG
14902648 AGGGTA
1 AGGGTA
14902654 AAACAATAAT
Statistics
Matches: 96, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
53 8 0.08
54 85 0.89
55 3 0.03
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTGATAATTTCACAAACCAAGGGTATTTTAGTAATTTTACAAATTG
Found at i:14902664 original size:54 final size:54
Alignment explanation
Indices: 14902606--14902765 Score: 122
Period size: 54 Copynumber: 3.0 Consensus size: 54
14902596 GGTATTTTGG
* *** * *
14902606 TAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATTGAGGGTAAAACAA
1 TAATTCTACAAACCAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAA
** ** ***
14902660 TAATTCTGTAAATTAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGG
1 TAATTCTACAAACCAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAA
* *** ** * * *
14902714 TAATTCTATAAATTGAGGGTAAAACGGTAATTCTATAAGTCGAAGGTAAAAC
1 TAATTCTACAAACCAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAAC
14902766 GGCAATTATG
Statistics
Matches: 85, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 85 1.00
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.33
Consensus pattern (54 bp):
TAATTCTACAAACCAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACAA
Found at i:14902761 original size:27 final size:27
Alignment explanation
Indices: 14902632--14902842 Score: 156
Period size: 27 Copynumber: 7.8 Consensus size: 27
14902622 GGGTATTTTA
* * * * *
14902632 GTAATTTTGTAAATTGAGGGTAAAACA
1 GTAATTCTATAAATCGAAGGTAAAACG
* * * **
14902659 ATAATTCTGTAAAT-TAAGGGTAAAATA
1 GTAATTCTATAAATCGAA-GGTAAAACG
* * *
14902686 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAAGGTAAAACG
* *
14902713 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAAGGTAAAACG
*
14902740 GTAATTCTATAAGTCGAAGGTAAAACG
1 GTAATTCTATAAATCGAAGGTAAAACG
* * * * *
14902767 GCAATTATGTAAATCG-GGGTTAAAACT
1 GTAATTCTATAAATCGAAGG-TAAAACG
* * *
14902794 GTAATTATGTAAATCGGAGGTAAAACG
1 GTAATTCTATAAATCGAAGGTAAAACG
* *
14902821 GTAATTCTGTAAATCGGAGGTA
1 GTAATTCTATAAATCGAAGGTA
14902843 CTTTGGTAAT
Statistics
Matches: 153, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
26 3 0.02
27 147 0.96
28 3 0.02
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAAGGTAAAACG
Found at i:14902762 original size:81 final size:81
Alignment explanation
Indices: 14902632--14902842 Score: 223
Period size: 81 Copynumber: 2.6 Consensus size: 81
14902622 GGGTATTTTA
* ** * * * *
14902632 GTAATTTTGTAAATTGAGGGTAAAACAATAATTCTGTAAAT-TAAGGGTAAAATAGTAATTTTAT
1 GTAATTATGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAA-GGTAAAACAGCAATTATAT
14902696 AAATCGAGGG-TAAAA-T
65 AAATCG-GGGTTAAAACT
* * * * * *
14902712 GGTAATTCTATAAATTGAGGGTAAAACGGTAATTCTATAAGTCGAAGGTAAAACGGCAATTATGT
1 -GTAATTATGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAAGGTAAAACAGCAATTATAT
14902777 AAATCGGGGTTAAAACT
65 AAATCGGGGTTAAAACT
* *
14902794 GTAATTATGTAAATCG-GAGGTAAAACGGTAATTCTGTAAATCGGAGGTA
1 GTAATTATGTAAATTGAG-GGTAAAACGGTAATTCTGTAAATCGAAGGTA
14902843 CTTTGGTAAT
Statistics
Matches: 108, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
80 4 0.04
81 101 0.94
82 3 0.03
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.30
Consensus pattern (81 bp):
GTAATTATGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAAGGTAAAACAGCAATTATATA
AATCGGGGTTAAAACT
Found at i:14902780 original size:54 final size:54
Alignment explanation
Indices: 14902631--14902834 Score: 203
Period size: 54 Copynumber: 3.8 Consensus size: 54
14902621 AGGGTATTTT
* * * * ** * *
14902631 AGTAATTTTGTAAATTGAGGGTAAAACAATAATTCTGTAAATTAAGGGTAAAAT
1 AGTAATTATATAAATCGAAGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAAC
* * * *
14902685 AGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAAC
1 AGTAATTATATAAATCGAAGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAAC
* * * * * *
14902739 GGTAATTCTATAAGTCGAAGGTAAAACGGCAATTATGTAAATCG-GGGTTAAAAC
1 AGTAATTATATAAATCGAAGGTAAAACGGTAATTCTGTAAATTGAGGG-TAAAAC
* * *
14902793 TGTAATTATGTAAATCGGAGGTAAAACGGTAATTCTGTAAAT
1 AGTAATTATATAAATCGAAGGTAAAACGGTAATTCTGTAAAT
14902835 CGGAGGTACT
Statistics
Matches: 125, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
53 3 0.02
54 122 0.98
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (54 bp):
AGTAATTATATAAATCGAAGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAAC
Found at i:14902896 original size:27 final size:27
Alignment explanation
Indices: 14902831--14902937 Score: 101
Period size: 27 Copynumber: 4.0 Consensus size: 27
14902821 GTAATTCTGT
* *
14902831 AAATCG-GAGGTACTTTGGTAATTTTAC
1 AAATCGAG-GGTATTTTAGTAATTTTAC
* * *
14902858 AAGTTGAAGGTATTTTAGTAATTTTAC
1 AAATCGAGGGTATTTTAGTAATTTTAC
* *
14902885 AAATCGAGGGTATTTCAGTATTTTTAC
1 AAATCGAGGGTATTTTAGTAATTTTAC
* *
14902912 AAA-CTAAGGGTATTTTGGTAATTTTA
1 AAATC-GAGGGTATTTTAGTAATTTTA
14902938 GTAAACTAAA
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
26 1 0.02
27 63 0.98
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
AAATCGAGGGTATTTTAGTAATTTTAC
Found at i:14905171 original size:31 final size:31
Alignment explanation
Indices: 14905133--14905207 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
14905123 ACGGTTACTA
14905133 GGCCGAAGCCTTTTCATAAATCATATCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
*
14905164 GGCCGAAGCCTTTTCATAAATCATTTCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
*
14905195 GGCCAAAGCCTTT
1 GGCCGAAGCCTTT
14905208 ACTGTAAATG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTG
Found at i:14905287 original size:42 final size:42
Alignment explanation
Indices: 14905231--14905323 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
14905221 TGGCCCATAG
* * ** *
14905231 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTGAATATCACATGAAATACCAATGAATGTATGCAA
* *
14905273 GCCTATTTGAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTGAATATCACATGAAATACCAATGAATGTATGCAA
14905315 GCCCATTTG
1 GCCCATTTG
14905324 GGGAGACTAC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31
Consensus pattern (42 bp):
GCCCATTTGAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:14905496 original size:25 final size:25
Alignment explanation
Indices: 14905455--14905536 Score: 114
Period size: 25 Copynumber: 3.3 Consensus size: 25
14905445 CTGGAGGCCT
14905455 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
**
14905479 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
14905504 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
14905530 AGCCCTT
1 AGCCCTT
14905537 GATATTAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.10
24 5 0.10
25 33 0.65
26 8 0.16
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:14909131 original size:40 final size:40
Alignment explanation
Indices: 14909057--14909158 Score: 147
Period size: 40 Copynumber: 2.6 Consensus size: 40
14909047 AACCCAAGTA
*
14909057 CCTTCGGGAT-TTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGCAACTAGCACAAATG
14909096 CCTTCGGGTCTTAGCCCGGATATAGTCAA-TAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCACAAATG
*
14909136 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
14909159 CATTCTAATA
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
38 1 0.02
39 12 0.21
40 42 0.72
41 3 0.05
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:14917206 original size:40 final size:40
Alignment explanation
Indices: 14917132--14917313 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
14917122 AACCCAAGTA
* *
14917132 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
14917171 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
14917211 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
14917251 CCTTCGGGACTTAGCGCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
14917291 CCTTCAGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
14917314 CATTCGAATA
Statistics
Matches: 132, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 12 0.09
40 117 0.89
41 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:14920217 original size:42 final size:42
Alignment explanation
Indices: 14920136--14920258 Score: 151
Period size: 42 Copynumber: 2.9 Consensus size: 42
14920126 GATCTCGTTT
* *
14920136 TGATGTTAATAGCCCAGCTATGGTCTTACACGAAA-TCTCAT-A
1 TGATGTT-ATATCCCAGATATGGTCTTACAC-AAAGTCTCATAA
*
14920178 TAGATGTTATATCCCAGATATGGTCTTATACAAAGTCTCATAA
1 T-GATGTTATATCCCAGATATGGTCTTACACAAAGTCTCATAA
** *
14920221 TGATGCCATATCCCAGATATGGTCTTACACATAGTCTC
1 TGATGTTATATCCCAGATATGGTCTTACACAAAGTCTC
14920259 CGTAACCCTA
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 3 0.04
42 60 0.85
43 8 0.11
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (42 bp):
TGATGTTATATCCCAGATATGGTCTTACACAAAGTCTCATAA
Found at i:14920475 original size:64 final size:64
Alignment explanation
Indices: 14920396--14920522 Score: 200
Period size: 64 Copynumber: 2.0 Consensus size: 64
14920386 AAAACATAAT
* *
14920396 TAAACATTGCATTATTTAGATAAGAACTTACCTTGATATAGAAATAGTAGGAAATGGAACTAAC
1 TAAACATTGCATTATTTAGATAAGAACTTACCTCGATACAGAAATAGTAGGAAATGGAACTAAC
* * * *
14920460 TAAACATTGCATTATTTAGATAAGAACTTACCTCGGTACAGCAATAGTGGGAAATGGACCTAA
1 TAAACATTGCATTATTTAGATAAGAACTTACCTCGATACAGAAATAGTAGGAAATGGAACTAA
14920523 TCGTCAAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 57 1.00
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.28
Consensus pattern (64 bp):
TAAACATTGCATTATTTAGATAAGAACTTACCTCGATACAGAAATAGTAGGAAATGGAACTAAC
Found at i:14923593 original size:44 final size:44
Alignment explanation
Indices: 14923543--14923630 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
14923533 CCAATTCCCA
14923543 ATGTAATTCACATCCTCAATGGGATTTTTGATATAGTGGAAGAG
1 ATGTAATTCACATCCTCAATGGGATTTTTGATATAGTGGAAGAG
14923587 ATGTAATTCACATCCTCAATGGGATTTTTGATATAGTGGAAGAG
1 ATGTAATTCACATCCTCAATGGGATTTTTGATATAGTGGAAGAG
14923631 CGGTTTGTCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (44 bp):
ATGTAATTCACATCCTCAATGGGATTTTTGATATAGTGGAAGAG
Found at i:14937304 original size:282 final size:282
Alignment explanation
Indices: 14936920--14937483 Score: 1128
Period size: 282 Copynumber: 2.0 Consensus size: 282
14936910 TCTCTTACTT
14936920 TATGTCCATTTTGGTCCACTAACTTAACAAATGGTCTAATTACCATCTAAGGACCTCTAATTTAA
1 TATGTCCATTTTGGTCCACTAACTTAACAAATGGTCTAATTACCATCTAAGGACCTCTAATTTAA
14936985 AATCTCATAGCAAATAAAACACCTTTAGCATATAGAACTCAAGTTTTACACTTTTTGAAATTTAG
66 AATCTCATAGCAAATAAAACACCTTTAGCATATAGAACTCAAGTTTTACACTTTTTGAAATTTAG
14937050 TCTTTTTTTTCTAAATTGAGTGCTCAAACGTCAAAATTTTTAAACAAAATTTTCACAAAATCATT
131 TCTTTTTTTTCTAAATTGAGTGCTCAAACGTCAAAATTTTTAAACAAAATTTTCACAAAATCATT
14937115 CCATAAAAATGTAGACCATAAAAATATAATAAAAACAAATTTTTTTGCATCGGATTCGTGGTCCT
196 CCATAAAAATGTAGACCATAAAAATATAATAAAAACAAATTTTTTTGCATCGGATTCGTGGTCCT
14937180 GAAACCACTGTTTTGGTTAGAC
261 GAAACCACTGTTTTGGTTAGAC
14937202 TATGTCCATTTTGGTCCACTAACTTAACAAATGGTCTAATTACCATCTAAGGACCTCTAATTTAA
1 TATGTCCATTTTGGTCCACTAACTTAACAAATGGTCTAATTACCATCTAAGGACCTCTAATTTAA
14937267 AATCTCATAGCAAATAAAACACCTTTAGCATATAGAACTCAAGTTTTACACTTTTTGAAATTTAG
66 AATCTCATAGCAAATAAAACACCTTTAGCATATAGAACTCAAGTTTTACACTTTTTGAAATTTAG
14937332 TCTTTTTTTTCTAAATTGAGTGCTCAAACGTCAAAATTTTTAAACAAAATTTTCACAAAATCATT
131 TCTTTTTTTTCTAAATTGAGTGCTCAAACGTCAAAATTTTTAAACAAAATTTTCACAAAATCATT
14937397 CCATAAAAATGTAGACCATAAAAATATAATAAAAACAAATTTTTTTGCATCGGATTCGTGGTCCT
196 CCATAAAAATGTAGACCATAAAAATATAATAAAAACAAATTTTTTTGCATCGGATTCGTGGTCCT
14937462 GAAACCACTGTTTTGGTTAGAC
261 GAAACCACTGTTTTGGTTAGAC
14937484 CCAAAAACAG
Statistics
Matches: 282, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
282 282 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (282 bp):
TATGTCCATTTTGGTCCACTAACTTAACAAATGGTCTAATTACCATCTAAGGACCTCTAATTTAA
AATCTCATAGCAAATAAAACACCTTTAGCATATAGAACTCAAGTTTTACACTTTTTGAAATTTAG
TCTTTTTTTTCTAAATTGAGTGCTCAAACGTCAAAATTTTTAAACAAAATTTTCACAAAATCATT
CCATAAAAATGTAGACCATAAAAATATAATAAAAACAAATTTTTTTGCATCGGATTCGTGGTCCT
GAAACCACTGTTTTGGTTAGAC
Found at i:14945607 original size:29 final size:29
Alignment explanation
Indices: 14945572--14945645 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
14945562 GTTGTGAGAT
* *
14945572 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
14945601 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
14945630 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
14945646 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:14946083 original size:40 final size:40
Alignment explanation
Indices: 14946035--14946311 Score: 356
Period size: 40 Copynumber: 6.9 Consensus size: 40
14946025 GAGTTACTAA
*
14946035 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
14946075 ATCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
14946115 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
14946155 ATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
14946195 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * * *
14946235 ATCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * *
14946275 ATCCGAGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
14946312 CGTGTATTCG
Statistics
Matches: 209, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 209 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:14946093 original size:80 final size:80
Alignment explanation
Indices: 14945956--14946311 Score: 378
Period size: 80 Copynumber: 4.5 Consensus size: 80
14945946 TCGAATGATG
* ** * *
14945956 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCT-AGTGA-TATATCCGGGCTAAG-TCCCGAAGAGC
* * * **
14946017 ATTGGTGCGAGTTACTAAA
63 ATTCGTGCTAGTGA-TGTA
* * * *
14946036 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCTGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
*
14946101 CATGCTAGTGATGTA
66 CGTGCTAGTGATGTA
*
14946116 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATT
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
14946181 CGTGCTAGTGATGTA
66 CGTGCTAGTGATGTA
* * ** *
14946196 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCAAAGAGCATT
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* * *
14946261 CGTGCTGGTGTTATA
66 CGTGCTAGTGATGTA
* * * * * *
14946276 TCCGAGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA
14946312 CGTGTATTCG
Statistics
Matches: 237, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
79 1 0.00
80 212 0.89
81 18 0.08
82 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATGTA
Found at i:14946172 original size:120 final size:120
Alignment explanation
Indices: 14945956--14946306 Score: 413
Period size: 120 Copynumber: 2.9 Consensus size: 120
14945946 TCGAATGATG
* * *
14945956 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGGCTAAGATCCGAAGAGCA
* * * *
14946018 TTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
64 TTCGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * * *
14946076 TCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGATCCGAAGAGCATT
* * * *
14946141 CATGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * * *
14946196 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCCAAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGA-TCCGAAGAGCAT
* * * * * *
14946260 TCGTGCTGGTGTTATATCCGAGCTAGGTCCCGAAGAGTAATCATGCT
65 TCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
14946307 GGTGACGTGT
Statistics
Matches: 195, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
120 170 0.87
121 19 0.10
122 6 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGATCCGAAGAGCATT
CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
Found at i:14949275 original size:47 final size:47
Alignment explanation
Indices: 14949222--14949632 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
14949212 TTAGGATTCT
14949222 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14949269 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14949316 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14949363 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14949410 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14949457 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14949504 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
14949551 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
14949598 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
14949633 TCCCGAAGGG
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:14949807 original size:37 final size:37
Alignment explanation
Indices: 14949751--14949829 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
14949741 CCGAGCTCTA
* * *
14949751 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
14949788 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14949825 AAGAC
1 AAGAC
14949830 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14966176 original size:21 final size:21
Alignment explanation
Indices: 14966147--14966188 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
14966137 GTATGTATAT
*
14966147 ATGTATTAT-ATAATAAGAAA
1 ATGTATTATAATAAAAAGAAA
14966167 ATGTAATTATAATAAAAAGAAA
1 ATGT-ATTATAATAAAAAGAAA
14966189 GTGGTTGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 5 0.26
22 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.31
Consensus pattern (21 bp):
ATGTATTATAATAAAAAGAAA
Found at i:14971906 original size:21 final size:21
Alignment explanation
Indices: 14971878--14971929 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
14971868 TTTTGCCTAA
*
14971878 GATG-TAAATTGGATTGAATT
1 GATGTTAAATTGGATTAAATT
*
14971898 GA-GTTTAAATTGTATTAAATT
1 GATG-TTAAATTGGATTAAATT
14971919 GATGTTAAATT
1 GATGTTAAATT
14971930 TACTCATACC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 1 0.04
20 2 0.07
21 23 0.85
22 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (21 bp):
GATGTTAAATTGGATTAAATT
Found at i:14972153 original size:17 final size:17
Alignment explanation
Indices: 14972131--14972163 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14972121 AACCAAAAAA
*
14972131 GCCCGATCAATGATAAT
1 GCCCGATAAATGATAAT
14972148 GCCCGATAAATGATAA
1 GCCCGATAAATGATAA
14972164 ATGATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (17 bp):
GCCCGATAAATGATAAT
Found at i:14980639 original size:16 final size:16
Alignment explanation
Indices: 14980618--14980648 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14980608 TTCACTATTA
14980618 TGTCTTTTATATTTTC
1 TGTCTTTTATATTTTC
14980634 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
14980649 GCATGCATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.10, G:0.06, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:14982287 original size:37 final size:36
Alignment explanation
Indices: 14982234--14982309 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
14982224 ATTCCAAAAA
*
14982234 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATATTAATAGTATT-ATATT-AATTTAATAT
*
14982270 TAATATTTATATTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATATTAATAGTATTATATTAATTTAATAT
14982307 TAA
1 TAA
14982310 AGTGATTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
37 20 0.57
38 2 0.06
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (36 bp):
TAATATTATATTAATAGTATTATATTAATTTAATAT
Found at i:14983599 original size:47 final size:47
Alignment explanation
Indices: 14983538--14983630 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
14983528 GTTTTCTATT
14983538 TGTATGGAAATACACATGAAGTCTTGGTTAAATGTTTTCTTATTCAG
1 TGTATGGAAATACACATGAAGTCTTGGTTAAATGTTTTCTTATTCAG
14983585 TGTAT-GAAAGTACACATGAAGTCTTGGTTAAATGTTTTCTTATTCA
1 TGTATGGAAA-TACACATGAAGTCTTGGTTAAATGTTTTCTTATTCA
14983631 ATCTTTCTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
46 4 0.09
47 41 0.91
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (47 bp):
TGTATGGAAATACACATGAAGTCTTGGTTAAATGTTTTCTTATTCAG
Found at i:14998509 original size:22 final size:22
Alignment explanation
Indices: 14998484--14998526 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14998474 CTGCGATATT
* *
14998484 TATGGCTTTTAGCCATTCTGTC
1 TATGGCGTTAAGCCATTCTGTC
*
14998506 TATGGCGTTAAGCCGTTCTGT
1 TATGGCGTTAAGCCATTCTGT
14998527 TGACTTAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.21, G:0.23, T:0.42
Consensus pattern (22 bp):
TATGGCGTTAAGCCATTCTGTC
Found at i:14998720 original size:27 final size:28
Alignment explanation
Indices: 14998667--14998731 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 28
14998657 GCATCTGATA
* *
14998667 CTGATTCT-TTATTGGGCTTAGGCCCAC
1 CTGATTCTGTTAATGGGCTAAGGCCCAC
14998694 CTGATTCTGTTAATGGGCTAAGG-CCAC
1 CTGATTCTGTTAATGGGCTAAGGCCCAC
*
14998721 CTGATACTGTT
1 CTGATTCTGTT
14998732 TTTGTGATGG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 22 0.65
28 12 0.35
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.35
Consensus pattern (28 bp):
CTGATTCTGTTAATGGGCTAAGGCCCAC
Found at i:14999586 original size:18 final size:18
Alignment explanation
Indices: 14999563--14999601 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
14999553 TGGGCTGATT
14999563 TCTGCAAGAATTCTCATC
1 TCTGCAAGAATTCTCATC
14999581 TCTGCAAGAATTCTCATC
1 TCTGCAAGAATTCTCATC
14999599 TCT
1 TCT
14999602 CGAGAGTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.36
Consensus pattern (18 bp):
TCTGCAAGAATTCTCATC
Found at i:15003221 original size:25 final size:25
Alignment explanation
Indices: 15003187--15003242 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
15003177 CCGTAAAGGA
*
15003187 GTTCCAAGATATTTTTTCGGAAGAG
1 GTTCCAAGATATTTTTCCGGAAGAG
*
15003212 GTTCCAAGATGTTTTTCCGGAAGAG
1 GTTCCAAGATATTTTTCCGGAAGAG
*
15003237 CTTCCA
1 GTTCCA
15003243 GGATTGCCTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (25 bp):
GTTCCAAGATATTTTTCCGGAAGAG
Found at i:15008088 original size:27 final size:26
Alignment explanation
Indices: 15008046--15008186 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 26
15008036 AGGAAGCGTC
* *
15008046 CTGGTGGCTATCCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
15008073 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
15008100 TTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
15008127 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
15008154 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
15008181 CTGGTG
1 CTGGTG
15008187 ACTTCGTCAT
Statistics
Matches: 99, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
26 10 0.10
27 87 0.88
28 2 0.02
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:15008129 original size:54 final size:53
Alignment explanation
Indices: 15008046--15008186 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
15008036 AGGAAGCGTC
*
15008046 CTGGTGGCTATCCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
15008100 TTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
15008154 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
15008187 ACTTCGTCAT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:15014317 original size:17 final size:18
Alignment explanation
Indices: 15014291--15014329 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
15014281 AAACATGTGG
15014291 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
15014307 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
15014325 AAAAT
1 AAAAT
15014330 CAAAAGCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:15014506 original size:15 final size:15
Alignment explanation
Indices: 15014486--15014516 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15014476 AAAACAATAT
15014486 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
15014501 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
15014516 A
1 A
15014517 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:15017888 original size:15 final size:15
Alignment explanation
Indices: 15017878--15017907 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15017868 TCCCTTCTTG
15017878 ACCACGACCTTTTCC
1 ACCACGACCTTTTCC
*
15017893 ACCACGACCATTTCC
1 ACCACGACCTTTTCC
15017908 TCGATCTCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.47, G:0.07, T:0.23
Consensus pattern (15 bp):
ACCACGACCTTTTCC
Found at i:15018675 original size:17 final size:18
Alignment explanation
Indices: 15018649--15018687 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
15018639 CAAATTGTGG
15018649 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
15018665 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
15018683 AAAAT
1 AAAAT
15018688 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:15018864 original size:15 final size:15
Alignment explanation
Indices: 15018844--15018874 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15018834 AAAATAATAT
15018844 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
15018859 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
15018874 A
1 A
15018875 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:15019602 original size:13 final size:13
Alignment explanation
Indices: 15019584--15019609 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15019574 GATATTCCAG
15019584 CAGCTTGATCTTC
1 CAGCTTGATCTTC
15019597 CAGCTTGATCTTC
1 CAGCTTGATCTTC
15019610 AACACTTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.15, T:0.38
Consensus pattern (13 bp):
CAGCTTGATCTTC
Found at i:15022509 original size:13 final size:13
Alignment explanation
Indices: 15022491--15022516 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15022481 GATATTCCAA
15022491 CAGCTTGATCTTC
1 CAGCTTGATCTTC
15022504 CAGCTTGATCTTC
1 CAGCTTGATCTTC
15022517 TGCTTCTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.15, T:0.38
Consensus pattern (13 bp):
CAGCTTGATCTTC
Found at i:15022789 original size:5 final size:5
Alignment explanation
Indices: 15022781--15022815 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
15022771 TATAATATCC
15022781 ATTTT ATTTT ATTTT ATTTT ATTTT A-TTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A
15022816 GTCAATAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.14
5 25 0.86
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:15023798 original size:40 final size:39
Alignment explanation
Indices: 15023743--15023821 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 39
15023733 CAAAAATGAT
15023743 ACCAAAGCAGACTTAAATAATGGCTTACTACTGAACCGC
1 ACCAAAGCAGACTTAAATAATGGCTTACTACTGAACCGC
*
15023782 NACCAAAGCAGACTTAAATTATGGCTTACTACTGAACCGC
1 -ACCAAAGCAGACTTAAATAATGGCTTACTACTGAACCGC
15023822 TCATGGTCAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.22
Consensus pattern (39 bp):
ACCAAAGCAGACTTAAATAATGGCTTACTACTGAACCGC
Found at i:15029042 original size:36 final size:37
Alignment explanation
Indices: 15028995--15029068 Score: 123
Period size: 36 Copynumber: 2.0 Consensus size: 37
15028985 AAACTATTTT
15028995 GAATTAATTTCATCAGTTTAAG-TTCTTTTTTCCGAA
1 GAATTAATTTCATCAGTTTAAGCTTCTTTTTTCCGAA
*
15029031 GAATTAATTTCATCAGTTTAAGCCTTTTTTTTTCCGAA
1 GAATTAATTTCATCAGTTTAAG-CTTCTTTTTTCCGAA
15029069 CTTAGCTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 22 0.63
38 13 0.37
ACGTcount: A:0.27, C:0.15, G:0.11, T:0.47
Consensus pattern (37 bp):
GAATTAATTTCATCAGTTTAAGCTTCTTTTTTCCGAA
Found at i:15030651 original size:16 final size:15
Alignment explanation
Indices: 15030632--15030674 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
15030622 GTCAAGACTC
15030632 TTTATAACAATCATGT
1 TTTATAACAA-CATGT
*
15030648 TTTATAACAACATTT
1 TTTATAACAACATGT
15030663 TATTATAACAAC
1 T-TTATAACAAC
15030675 TAAATTCGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 5 0.20
16 20 0.80
ACGTcount: A:0.42, C:0.14, G:0.02, T:0.42
Consensus pattern (15 bp):
TTTATAACAACATGT
Found at i:15032224 original size:20 final size:20
Alignment explanation
Indices: 15032199--15032248 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
15032189 GGGTACACAC
*
15032199 CCGTGTGGCCTGGGATATGG
1 CCGTGTGGCCTGGGACATGG
15032219 CCGTGTGGCCTGGGACATGG
1 CCGTGTGGCCTGGGACATGG
*
15032239 CCGTGAGGCC
1 CCGTGTGGCC
15032249 AGGCCATGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.10, C:0.26, G:0.44, T:0.20
Consensus pattern (20 bp):
CCGTGTGGCCTGGGACATGG
Found at i:15033372 original size:93 final size:94
Alignment explanation
Indices: 15033274--15033466 Score: 370
Period size: 93 Copynumber: 2.1 Consensus size: 94
15033264 AATAGAAACT
15033274 ACCATACCATAGATCTGACGATATCAGAAACCCATATTTAAAACAATTTTTAAGAAAGAAACTTA
1 ACCATACCATAGATCTGACGATATCAGAAACCCATATTTAAAACAATTTTTAAGAAAGAAACTTA
15033339 TTCATGTTT-AATAAAATATGCAAACTTC
66 TTCATGTTTAAATAAAATATGCAAACTTC
*
15033367 GCCATACCATAGATCTGACGATATCAGAAACCCATATTTAAAACAATTTTTAAGAAAGAAACTTA
1 ACCATACCATAGATCTGACGATATCAGAAACCCATATTTAAAACAATTTTTAAGAAAGAAACTTA
15033432 TTCATGTTTAAATAAAATATGCAAACTTC
66 TTCATGTTTAAATAAAATATGCAAACTTC
15033461 ACCATA
1 ACCATA
15033467 TTCAAATATC
Statistics
Matches: 97, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
93 73 0.75
94 24 0.25
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.30
Consensus pattern (94 bp):
ACCATACCATAGATCTGACGATATCAGAAACCCATATTTAAAACAATTTTTAAGAAAGAAACTTA
TTCATGTTTAAATAAAATATGCAAACTTC
Found at i:15036952 original size:41 final size:41
Alignment explanation
Indices: 15036893--15036974 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
15036883 ATGGAAAGTG
* * *
15036893 TATGTTTAAGCCTGGTATTATGTTAATCTATTTCTAATTAT
1 TATGTTTAAGCCTAGTATTATATTAATCTACTTCTAATTAT
15036934 TATGTTTAAGCCTAGTATTATATTAATCTACTTCTAATTAT
1 TATGTTTAAGCCTAGTATTATATTAATCTACTTCTAATTAT
15036975 CTCCATGTAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.29, C:0.11, G:0.10, T:0.50
Consensus pattern (41 bp):
TATGTTTAAGCCTAGTATTATATTAATCTACTTCTAATTAT
Found at i:15037658 original size:14 final size:13
Alignment explanation
Indices: 15037628--15037654 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15037618 AGCCCGGCCG
15037628 TATTAATTTTTTA
1 TATTAATTTTTTA
15037641 TATTAATTTTTTA
1 TATTAATTTTTTA
15037654 T
1 T
15037655 TATTTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TATTAATTTTTTA
Found at i:15037817 original size:30 final size:30
Alignment explanation
Indices: 15037781--15037843 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
15037771 ACTTAAAAAG
15037781 CAAATG-CTTCTAAAATAATAAAAAAATTAA
1 CAAATGCCTT-TAAAATAATAAAAAAATTAA
*
15037811 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
15037841 CAA
1 CAA
15037844 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.90
31 3 0.10
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAAAAAATTAA
Found at i:15040017 original size:32 final size:32
Alignment explanation
Indices: 15039977--15040057 Score: 128
Period size: 32 Copynumber: 2.5 Consensus size: 32
15039967 TGAAATTAGT
*
15039977 TTGTTGGATTTTGAAATTATTATGTTTTAAAG-
1 TTGTTGGATATTGAAATTATTATGTTTT-AAGC
*
15040009 TTGTTGGATATTGAATTTATTATGTTTTAAGC
1 TTGTTGGATATTGAAATTATTATGTTTTAAGC
15040041 TTGTTGGATATTGAAAT
1 TTGTTGGATATTGAAAT
15040058 GATTGACAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 3 0.07
32 42 0.93
ACGTcount: A:0.27, C:0.01, G:0.20, T:0.52
Consensus pattern (32 bp):
TTGTTGGATATTGAAATTATTATGTTTTAAGC
Found at i:15041175 original size:24 final size:23
Alignment explanation
Indices: 15041147--15041223 Score: 63
Period size: 24 Copynumber: 3.3 Consensus size: 23
15041137 TTTGTAATAT
*
15041147 TAGTTATGCACTTGGACGATATTG
1 TAGTTATGCACTTGGA-AATATTG
*
15041171 TAGTTAT-CA-TGTGGTATAATA--C
1 TAGTTATGCACT-TGG-A-AATATTG
15041193 TAGTTATGCACTTGGAAAATATTG
1 TAGTTATGCACTTGG-AAATATTG
15041217 TAGTTAT
1 TAGTTAT
15041224 CATGTAGTGT
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
22 12 0.29
23 11 0.26
24 19 0.45
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (23 bp):
TAGTTATGCACTTGGAAATATTG
Found at i:15041208 original size:46 final size:46
Alignment explanation
Indices: 15041141--15041228 Score: 149
Period size: 46 Copynumber: 1.9 Consensus size: 46
15041131 TACTAATTTG
* **
15041141 TAATATTAGTTATGCACTTGGACGATATTGTAGTTATCATGTGGTA
1 TAATACTAGTTATGCACTTGGAAAATATTGTAGTTATCATGTGGTA
15041187 TAATACTAGTTATGCACTTGGAAAATATTGTAGTTATCATGT
1 TAATACTAGTTATGCACTTGGAAAATATTGTAGTTATCATGT
15041229 AGTGTACTAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (46 bp):
TAATACTAGTTATGCACTTGGAAAATATTGTAGTTATCATGTGGTA
Found at i:15041240 original size:46 final size:46
Alignment explanation
Indices: 15041141--15041240 Score: 146
Period size: 46 Copynumber: 2.2 Consensus size: 46
15041131 TACTAATTTG
* ** *
15041141 TAATATTAGTTATGCACTTGGACGATATTGTAGTTATCATGTGGTA
1 TAATACTAGTTATGCACTTGGAAAATATTGTAGTTATCATGTAGTA
*
15041187 TAATACTAGTTATGCACTTGGAAAATATTGTAGTTATCATGTAGTG
1 TAATACTAGTTATGCACTTGGAAAATATTGTAGTTATCATGTAGTA
*
15041233 TACTACTA
1 TAATACTA
15041241 ATTTGTAATA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (46 bp):
TAATACTAGTTATGCACTTGGAAAATATTGTAGTTATCATGTAGTA
Found at i:15045164 original size:6 final size:6
Alignment explanation
Indices: 15045147--15045178 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
15045137 ACGCTTCTTC
15045147 TCCCCTT TCCCCT TCCCCT TCCCCT TCCCCT T
1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT T
15045179 GGGTTGCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (6 bp):
TCCCCT
Found at i:15045281 original size:25 final size:25
Alignment explanation
Indices: 15045253--15045302 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
15045243 CAAGTAAGGC
15045253 TCCTTCTCCTTCTTCCGTTCTTCAT
1 TCCTTCTCCTTCTTCCGTTCTTCAT
* * *
15045278 TCCTTTTCCTTCTTTCGTTTTTCAT
1 TCCTTCTCCTTCTTCCGTTCTTCAT
15045303 CTTCTCTTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.04, C:0.34, G:0.04, T:0.58
Consensus pattern (25 bp):
TCCTTCTCCTTCTTCCGTTCTTCAT
Found at i:15048320 original size:18 final size:18
Alignment explanation
Indices: 15048299--15048341 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
15048289 ATAATTTAAA
15048299 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
15048317 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
15048335 ATGTAAA
1 ATATAAA
15048342 AACAGCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:15048443 original size:19 final size:19
Alignment explanation
Indices: 15048419--15048455 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
15048409 TCCAAACACC
15048419 AGAAAAGTAAATCATTTTT
1 AGAAAAGTAAATCATTTTT
15048438 AGAAAAGTAAATCATTTT
1 AGAAAAGTAAATCATTTT
15048456 CCAGAAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.05, G:0.11, T:0.35
Consensus pattern (19 bp):
AGAAAAGTAAATCATTTTT
Found at i:15048465 original size:14 final size:14
Alignment explanation
Indices: 15048446--15048483 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
15048436 TTAGAAAAGT
15048446 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
15048460 AAATCATTTTCCGG
1 AAATCATTTTCCAG
*
15048474 AAAGCATTTT
1 AAATCATTTT
15048484 ACTGGCTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:15054815 original size:6 final size:6
Alignment explanation
Indices: 15054783--15054826 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
15054773 ACAGTACCTA
* *
15054783 AACAGT AATCAGT AACGGT AGCAGT AACAGT AACAGT AACAGT A
1 AACAGT AA-CAGT AACAGT AACAGT AACAGT AACAGT AACAGT A
15054827 TTCAACACAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.18
Consensus pattern (6 bp):
AACAGT
Found at i:15054902 original size:45 final size:45
Alignment explanation
Indices: 15054806--15054916 Score: 127
Period size: 45 Copynumber: 2.5 Consensus size: 45
15054796 AACGGTAGCA
*
15054806 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAATCT
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAGTGCTGAATCT
** * * *
15054851 ACAACAGTTACGGTAACAGTATTCGACATACAAAGTG-TCGAAT-T
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAGTGCT-GAATCT
*
15054895 GGTAACAGTAATGGTAACAGTA
1 -GTAACAGTAACGGTAACAGTA
15054917 ACAGTAGTCA
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
44 2 0.04
45 52 0.96
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.23
Consensus pattern (45 bp):
GTAACAGTAACGGTAACAGTATTCAACACACAAAGTGCTGAATCT
Found at i:15055173 original size:40 final size:40
Alignment explanation
Indices: 15055124--15055210 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 40
15055114 ATTCGTTTCA
* * *
15055124 TCAGAAATTTTACAGTTCAATGCAGTATACATAACAATAT
1 TCAGTAATTTCACAGTTCAATGCAGTATACAAAACAATAT
* * *
15055164 TCAGTAATTTCACAGTTCAATTCGGTATTCAAAACAATAT
1 TCAGTAATTTCACAGTTCAATGCAGTATACAAAACAATAT
15055204 TCAGTAA
1 TCAGTAA
15055211 CCTATAATCC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.33
Consensus pattern (40 bp):
TCAGTAATTTCACAGTTCAATGCAGTATACAAAACAATAT
Found at i:15056038 original size:18 final size:18
Alignment explanation
Indices: 15056015--15056056 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
15056005 TTTATTAACT
15056015 TAATAATAATAATTATTA
1 TAATAATAATAATTATTA
* *
15056033 TTATAATAATTATTATTA
1 TAATAATAATAATTATTA
15056051 TAATAA
1 TAATAA
15056057 ATATCTTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
TAATAATAATAATTATTA
Found at i:15056040 original size:15 final size:15
Alignment explanation
Indices: 15056020--15056056 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
15056010 TAACTTAATA
15056020 ATAATAATTATTATT
1 ATAATAATTATTATT
15056035 ATAATAATTATTATT
1 ATAATAATTATTATT
15056050 ATAATAA
1 ATAATAA
15056057 ATATCTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
ATAATAATTATTATT
Found at i:15056252 original size:23 final size:23
Alignment explanation
Indices: 15056215--15056263 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
15056205 GAAAAGTAAT
*
15056215 TAAATAAATATATTACAAATGTA
1 TAAATAAATACATTACAAATGTA
* **
15056238 TAAATATATACATTACACTTGTA
1 TAAATAAATACATTACAAATGTA
15056261 TAA
1 TAA
15056264 TTTAATCACC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (23 bp):
TAAATAAATACATTACAAATGTA
Found at i:15056311 original size:3 final size:3
Alignment explanation
Indices: 15056303--15056375 Score: 55
Period size: 3 Copynumber: 24.7 Consensus size: 3
15056293 AATTTATTTT
* *
15056303 TAA TAA TAA TAA TCA TAA T-T TAA T-A TCAA TAA TAA TAA CTAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA -TAA TAA
* *
15056348 TTA TAA TAA TCAA TTA T-A TAA T-A TAA TA
1 TAA TAA TAA T-AA TAA TAA TAA TAA TAA TA
15056376 TATATAATCT
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
2 7 0.12
3 41 0.73
4 8 0.14
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:15056324 original size:20 final size:20
Alignment explanation
Indices: 15056301--15056375 Score: 68
Period size: 20 Copynumber: 3.8 Consensus size: 20
15056291 TTAATTTATT
*
15056301 TTTAATAATAATAATCATAA
1 TTTAATAATAATAATAATAA
15056321 TTTAAT-ATCAATAATAATAA
1 TTTAATAAT-AATAATAATAA
* *
15056341 -CTAATAATTATAATAATCAA
1 TTTAATAATAATAATAAT-AA
15056361 -TTATATAAT-ATAATA
1 TTTA-ATAATAATAATA
15056376 TATATAATCT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
19 14 0.30
20 28 0.60
21 5 0.11
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (20 bp):
TTTAATAATAATAATAATAA
Found at i:15056359 original size:29 final size:27
Alignment explanation
Indices: 15056304--15056384 Score: 89
Period size: 26 Copynumber: 3.0 Consensus size: 27
15056294 ATTTATTTTT
15056304 AATAATAATAATCATAATT-TAAT-ATC
1 AATAATAATAAT-ATAATTATAATAATC
15056330 AATAATAATAACTAATAATTATAATAATC
1 AATAATAATAA-T-ATAATTATAATAATC
*
15056359 AATTAT-ATAATATAA-TATATATAATC
1 AATAATAATAATATAATTATA-ATAATC
15056385 TAAATAAAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
25 4 0.08
26 21 0.43
27 8 0.16
28 8 0.16
29 8 0.16
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (27 bp):
AATAATAATAATATAATTATAATAATC
Found at i:15058954 original size:13 final size:13
Alignment explanation
Indices: 15058936--15058960 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15058926 ATAAAAGAAC
15058936 ATATAGAATACCA
1 ATATAGAATACCA
15058949 ATATAGAATACC
1 ATATAGAATACC
15058961 CAGAAGAGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.08, T:0.24
Consensus pattern (13 bp):
ATATAGAATACCA
Found at i:15063247 original size:21 final size:20
Alignment explanation
Indices: 15063222--15063262 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
15063212 GCAGGAATGG
*
15063222 CATTTTCCCTACAACTAATA
1 CATTTTCCATACAACTAATA
15063242 NCATTTTCCATACAACTAATA
1 -CATTTTCCATACAACTAATA
15063263 GTGGCAGCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.34
Consensus pattern (20 bp):
CATTTTCCATACAACTAATA
Found at i:15066055 original size:39 final size:38
Alignment explanation
Indices: 15065986--15066120 Score: 94
Period size: 39 Copynumber: 3.4 Consensus size: 38
15065976 ACCAATATGG
* * *
15065986 CACCCAGTGCCTCATCGGATAGTTCAAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGTAATAGTTGA
* *
15066025 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGTAATAGTTGA
* * * * * *
15066063 TACCTAGTACCTCATCGAATCTATCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGTAATAGT--TGA
*
15066104 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
15066121 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
38 18 0.25
39 36 0.49
40 4 0.05
41 15 0.21
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGTAATAGTTGA
Found at i:15067846 original size:8 final size:8
Alignment explanation
Indices: 15067833--15067858 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
15067823 AAAAAATCTC
15067833 ATAATTTA
1 ATAATTTA
15067841 ATAATTTA
1 ATAATTTA
15067849 ATAATTTA
1 ATAATTTA
15067857 AT
1 AT
15067859 TAACAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
ATAATTTA
Found at i:15068063 original size:21 final size:20
Alignment explanation
Indices: 15067999--15068064 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 20
15067989 ATCAATTAAG
15067999 TAATCATAATAATTTAATATA
1 TAAT-ATAATAATTTAATATA
*
15068020 AAACTATAATAA--TAATCATTA
1 TAA-TATAATAATTTAAT-A-TA
15068041 TAATATATATAATTTAATATA
1 TAATATA-ATAATTTAATATA
15068062 TAA
1 TAA
15068065 AACCTAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
19 4 0.11
20 5 0.14
21 22 0.59
22 2 0.05
23 4 0.11
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (20 bp):
TAATATAATAATTTAATATA
Found at i:15072309 original size:21 final size:21
Alignment explanation
Indices: 15072285--15072324 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15072275 TAATGTCACA
*
15072285 TCAGTAATTTT-ATTTTGAATT
1 TCAG-AATTTTCATATTGAATT
15072306 TCAGAATTTTCATATTGAA
1 TCAGAATTTTCATATTGAA
15072325 AATGTTGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (21 bp):
TCAGAATTTTCATATTGAATT
Found at i:15072766 original size:107 final size:108
Alignment explanation
Indices: 15072559--15072786 Score: 336
Period size: 107 Copynumber: 2.1 Consensus size: 108
15072549 TAAAAAAGAG
* * *
15072559 ATACAAAT-AACATGAAGTTACTATTTTATACAATTATTTCCCTATGCATTTATGCCATAAATGG
1 ATACAAATAAACATG-AGTTACTATTTCATACAATTATTTCCCTATGCATTCATGCCATAAATAG
15072623 AATACAACGTGCTTTAAGTATTTATTCACGCAGATTTGAAATTA
65 AATACAACGTGCTTTAAGTATTTATTCACGCAGATTTGAAATTA
*
15072667 ATACAAATAAACATG-GTTATTATTTCATACAATTATTTCCCTATGCATTCATGCCATAAATAGA
1 ATACAAATAAACATGAGTTACTATTTCATACAATTATTTCCCTATGCATTCATGCCATAAATAGA
* * * *
15072731 ATCCAACGTGCTTT-AGCTATTTATTCTCGCGGATTTGGAATTA
66 ATACAACGTGCTTTAAG-TATTTATTCACGCAGATTTGAAATTA
*
15072774 ATGCAAATAAACA
1 ATACAAATAAACA
15072787 ACATAACCGA
Statistics
Matches: 109, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
106 2 0.02
107 93 0.85
108 8 0.07
109 6 0.06
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (108 bp):
ATACAAATAAACATGAGTTACTATTTCATACAATTATTTCCCTATGCATTCATGCCATAAATAGA
ATACAACGTGCTTTAAGTATTTATTCACGCAGATTTGAAATTA
Found at i:15073389 original size:21 final size:21
Alignment explanation
Indices: 15073355--15073398 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
15073345 AAATTTCTAC
*
15073355 AATTTCTCCCTAAAGCTCTCA
1 AATTTCTCACTAAAGCTCTCA
* **
15073376 AATTTCTCATTAAATTTCTCA
1 AATTTCTCACTAAAGCTCTCA
15073397 AA
1 AA
15073399 GCTCTTTATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTTCTCACTAAAGCTCTCA
Found at i:15076708 original size:7 final size:7
Alignment explanation
Indices: 15076698--15076722 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
15076688 ATTCATTTCA
15076698 TATTTAG
1 TATTTAG
15076705 TATTTAG
1 TATTTAG
15076712 TATTTAG
1 TATTTAG
15076719 TATT
1 TATT
15076723 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:15080643 original size:30 final size:30
Alignment explanation
Indices: 15080587--15080643 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
15080577 ATGGCCATGA
* *
15080587 CACATGGGCGTGTGGTCTGCCGATGTGCCT
1 CACATGGGCGTGTGGTCTACCCATGTGCCT
*
15080617 CACATGGGCGTGTGGTTTACCCATGTG
1 CACATGGGCGTGTGGTCTACCCATGTG
15080644 GAAGTGCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.12, C:0.25, G:0.35, T:0.28
Consensus pattern (30 bp):
CACATGGGCGTGTGGTCTACCCATGTGCCT
Found at i:15082657 original size:251 final size:251
Alignment explanation
Indices: 15082204--15082706 Score: 772
Period size: 251 Copynumber: 2.0 Consensus size: 251
15082194 CTAAGGCCAA
** *
15082204 TCATGAACTACTGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACATTG
1 TCATGAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAATG
15082269 CATCCTGCTTGAAACATTTTTGACACTAGTTGTTCAGAAACATCTTCTCAAAATTATATTTTCAA
66 CATCCTGCTTGAAACATTTTTGACACTAGTTGTTCAGAAACATCTTCTCAAAATTATATTTTCAA
* *
15082334 GAACTACTGTAGAATAAGAGCGTCCACGTGGGAGCTTTTTTCTGTAAGTTTGCTGACAATGCATC
131 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCTGTAAGTTTGCTGACAATGCATC
* *
15082399 CTGCTTGAAGTGTTTTTGACACTATTTGTTAAGAAACATCTTCTCAAAATTATTTT
196 CTGCTTGAAGCGTTTTTGACACTATTTATTAAGAAACATCTTCTCAAAATTATTTT
* * * *
15082455 TCATGAACTACTGTAGAAAAAGAGCATCCACGTGGTAGTTTTTTTCCGTAATTTTGCTGACAATG
1 TCATGAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAATG
* * * * * *
15082520 CATCCTGCTTGAAGCTTTTTTGACACTATTTGTTCAGAAATATCTTCTCAAAATTATTTTTTCAG
66 CATCCTGCTTGAAACATTTTTGACACTAGTTGTTCAGAAACATCTTCTCAAAATTATATTTTCAA
* * ** * *
15082585 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGTTTTTTTTTGTATTTTTGCTGATAGTGCATC
131 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCTGTAAGTTTGCTGACAATGCATC
* * *
15082650 TTGCTTGAAGCGTTTTTGACACTATTTATTCAGAAACGTCTTCTCAAAATTATTTT
196 CTGCTTGAAGCGTTTTTGACACTATTTATTAAGAAACATCTTCTCAAAATTATTTT
15082706 T
1 T
15082707 TCAGGGTACA
Statistics
Matches: 226, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
251 226 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (251 bp):
TCATGAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACAATG
CATCCTGCTTGAAACATTTTTGACACTAGTTGTTCAGAAACATCTTCTCAAAATTATATTTTCAA
GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCTGTAAGTTTGCTGACAATGCATC
CTGCTTGAAGCGTTTTTGACACTATTTATTAAGAAACATCTTCTCAAAATTATTTT
Found at i:15082710 original size:126 final size:126
Alignment explanation
Indices: 15082208--15082711 Score: 740
Period size: 126 Copynumber: 4.0 Consensus size: 126
15082198 GGCCAATCAT
** * * *
15082208 GAACTACTGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACATTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAATGCATC
* * * * *
15082273 CTGCTTGAAACATTTTTGACACTAGTTGTTCAGAAACATCTTCTCAAAATTATATTTTCAA
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
* * *
15082334 GAACTACTGTAGAATAAGAGCGTCCACGTGGGAGCTTTTTTCTGTAAGTTTGCTGACAATGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAATGCATC
* * *
15082399 CTGCTTGAAGTGTTTTTGACACTATTTGTTAAGAAACATCTTCTCAAAATTA-TTTTTCAT
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
* * *
15082459 GAACTACTGTAGAAAAAGAGCATCCACGTGGTAGTTTTTTTCCGTAATTTTGCTGACAATGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAATGCATC
* *
15082524 CTGCTTGAAGCTTTTTTGACACTATTTGTTCAGAAATATCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
* * * * *
15082585 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGTTTTTTTTTGTATTTTTGCTGATAGTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAATGCATC
* * *
15082650 TTGCTTGAAGCGTTTTTGACACTATTTATTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
15082711 G
1 G
15082712 GTACAAAATA
Statistics
Matches: 342, Mismatches: 35, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
125 113 0.33
126 229 0.67
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAATGCATC
CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
Found at i:15082790 original size:30 final size:29
Alignment explanation
Indices: 15082756--15082853 Score: 88
Period size: 30 Copynumber: 3.1 Consensus size: 29
15082746 CAATGTTATC
15082756 TTTAAAAAACTAAACCCTAATTTAATTAAA
1 TTTAAAAAACTAAACCCTAATTTAATT-AA
*
15082786 TTTAACCTTAAACACTAAACCCTAATTTAATTTA
1 TTTAA----AAA-ACTAAACCCTAATTTAATTAA
** * *
15082820 TTTAAAACCCTAAAACCTTAATTTACTTAA
1 TTTAAAAAACT-AAACCCTAATTTAATTAA
15082850 TTTA
1 TTTA
15082854 TTTAAAACCA
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
29 2 0.04
30 26 0.46
34 9 0.16
35 19 0.34
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (29 bp):
TTTAAAAAACTAAACCCTAATTTAATTAA
Found at i:15082878 original size:57 final size:60
Alignment explanation
Indices: 15082813--15083016 Score: 208
Period size: 66 Copynumber: 3.3 Consensus size: 60
15082803 AACCCTAATT
15082813 TAATTTATTTAAAACCCTAAAACCTTAATTTACTTAATTTATTT-AAAACCATA-C-ACCC
1 TAATTTATTTAAAACCCTAAAACC-TAATTTACTTAATTTATTTAAAAACCATACCAACCC
* *
15082871 TAA-TTATTTAATACCCTAAACCCT-A---ACTTAATTTATTTAAAAACCATAAATCCTAAACCC
1 TAATTTATTTAAAACCCTAAAACCTAATTTACTTAATTTATTTAAAAACCAT--A-CC--AACCC
* *
15082931 TAATTTATTTAAAACCCTAGAACACTAATTTGCTTAATTTATTTAAAAACCATAAACTCTAAACC
1 TAATTTATTTAAAACCCTAAAAC-CTAATTTACTTAATTTATTTAAAAACCAT--AC-C--AACC
15082996 C
60 C
15082997 TAATTTATTTAAAACCCTAA
1 TAATTTATTTAAAACCCTAA
15083017 CTTAATTTAT
Statistics
Matches: 124, Mismatches: 7, Indels: 22
0.81 0.05 0.14
Matches are distributed among these distances:
52 13 0.10
53 8 0.06
55 2 0.02
56 1 0.01
57 19 0.15
58 3 0.02
60 7 0.06
61 16 0.13
62 2 0.02
63 1 0.01
65 1 0.01
66 51 0.41
ACGTcount: A:0.43, C:0.21, G:0.01, T:0.36
Consensus pattern (60 bp):
TAATTTATTTAAAACCCTAAAACCTAATTTACTTAATTTATTTAAAAACCATACCAACCC
Found at i:15082880 original size:23 final size:24
Alignment explanation
Indices: 15082851--15082905 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
15082841 TTTACTTAAT
*
15082851 TTATTTAAAACCATACACCCTAA-
1 TTATTTAAAACCATAAACCCTAAC
* *
15082874 TTATTTAATACCCTAAACCCTAAC
1 TTATTTAAAACCATAAACCCTAAC
15082898 TTAATTTA
1 TT-ATTTA
15082906 TTTAAAAACC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 20 0.74
24 2 0.07
25 5 0.19
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (24 bp):
TTATTTAAAACCATAAACCCTAAC
Found at i:15082892 original size:30 final size:29
Alignment explanation
Indices: 15082858--15083069 Score: 124
Period size: 32 Copynumber: 7.2 Consensus size: 29
15082848 AATTTATTTA
*
15082858 AAACCATACACCCTAA-TTATTTAATACCCT
1 AAACC-TA-ACCCTAATTTATTTAAAACCCT
* *
15082888 AAACCCTAA-CTTAATTTATTTAAAAACCAT
1 AAA-CCTAACCCTAATTTATTT-AAAACCCT
15082918 AAATCCTAAACCCTAATTTATTTAAAACCCT
1 AAA-CCT-AACCCTAATTTATTTAAAACCCT
* * *
15082949 AGAACACTAATTTGCTTAATTTATTTAAAAACCAT
1 A-AAC-CTAA---CCCTAATTTATTT-AAAACCCT
15082984 AAACTCTAAACCCTAATTTATTTAAAACCCT
1 AAAC-CT-AACCCTAATTTATTTAAAACCCT
*
15083015 -AA-CT-----TAATTTATTTAAACCCCT
1 AAACCTAACCCTAATTTATTTAAAACCCT
* *
15083037 AAA---AACTCTAATTTACTTAAAAACCCT
1 AAACCTAACCCTAATTTA-TTTAAAACCCT
15083064 AAACCT
1 AAACCT
15083070 TAATTTAAAT
Statistics
Matches: 144, Mismatches: 16, Indels: 44
0.71 0.08 0.22
Matches are distributed among these distances:
22 17 0.12
23 2 0.01
26 7 0.05
27 12 0.08
28 6 0.04
29 7 0.05
30 19 0.13
31 22 0.15
32 26 0.18
34 16 0.11
35 10 0.07
ACGTcount: A:0.43, C:0.23, G:0.01, T:0.33
Consensus pattern (29 bp):
AAACCTAACCCTAATTTATTTAAAACCCT
Found at i:15082938 original size:32 final size:32
Alignment explanation
Indices: 15082867--15083010 Score: 129
Period size: 32 Copynumber: 4.6 Consensus size: 32
15082857 AAAACCATAC
* * *
15082867 ACCCTAA-TTATTT-AATACCCTAAACCCT-A
1 ACCCTAATTTATTTAAAAACCATAAACACTAA
*
15082896 A-CTTAATTTATTTAAAAACCATAAATC-CTAA
1 ACCCTAATTTATTTAAAAACCATAAA-CACTAA
*
15082927 ACCCTAATTTATTT-AAAACCCTAGAACACTAA
1 ACCCTAATTTATTTAAAAACCATA-AACACTAA
** * *
15082959 TTTGCTTAATTTATTTAAAAACCATAAACTCTAA
1 --ACCCTAATTTATTTAAAAACCATAAACACTAA
15082993 ACCCTAATTTATTTAAAA
1 ACCCTAATTTATTTAAAA
15083011 CCCTAACTTA
Statistics
Matches: 92, Mismatches: 13, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
28 4 0.04
29 7 0.08
30 11 0.12
31 12 0.13
32 32 0.35
34 18 0.20
35 8 0.09
ACGTcount: A:0.43, C:0.21, G:0.01, T:0.35
Consensus pattern (32 bp):
ACCCTAATTTATTTAAAAACCATAAACACTAA
Found at i:15082968 original size:86 final size:85
Alignment explanation
Indices: 15082792--15082968 Score: 193
Period size: 86 Copynumber: 2.1 Consensus size: 85
15082782 TAAATTTAAC
* * *
15082792 CTTAA-ACACTAAACCCTAATTTAATTTATTTAAAACCCTAAAACCTTAATTTACTTAATTTATT
1 CTTAATACACTAAACCCTAACTTAATTTATTTAAAACCATAAAACCTTAA--TACCTAATTTATT
* *
15082856 TAAAACCATACACCCTAATTAT
64 TAAAACCATAAACACTAATTAT
* *
15082878 -TTAATACCCTAAACCCTAACTTAATTTATTTAAAAACCATAAATCC-TAA-ACCCTAATTTATT
1 CTTAATACACTAAACCCTAACTTAATTTATTT-AAAACCATAAAACCTTAATA-CCTAATTTATT
*
15082940 TAAAACCCTAGAACACTAATT-T
64 TAAAACCATA-AACACTAATTAT
15082962 GCTTAAT
1 -CTTAAT
15082969 TTATTTAAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 12
0.79 0.08 0.12
Matches are distributed among these distances:
83 1 0.01
84 20 0.26
85 12 0.16
86 32 0.42
87 12 0.16
ACGTcount: A:0.42, C:0.21, G:0.01, T:0.36
Consensus pattern (85 bp):
CTTAATACACTAAACCCTAACTTAATTTATTTAAAACCATAAAACCTTAATACCTAATTTATTTA
AAACCATAAACACTAATTAT
Found at i:15082976 original size:66 final size:61
Alignment explanation
Indices: 15082867--15083016 Score: 214
Period size: 66 Copynumber: 2.4 Consensus size: 61
15082857 AAAACCATAC
* *
15082867 ACCCTAA-TTATTTAATACCCTAAACCCTAACTTAATTTATTTAAAAACCATAAA-TCCTAA
1 ACCCTAATTTATTTAAAACCCTAAACACTAACTTAATTTATTTAAAAACCATAAACT-CTAA
15082927 ACCCTAATTTATTTAAAACCCTAGAACACTAATTTGCTTAATTTATTTAAAAACCATAAACTCTA
1 ACCCTAATTTATTTAAAACCCTA-AACACTAA----CTTAATTTATTTAAAAACCATAAACTCTA
15082992 A
61 A
15082993 ACCCTAATTTATTTAAAACCCTAA
1 ACCCTAATTTATTTAAAACCCTAA
15083017 CTTAATTTAT
Statistics
Matches: 81, Mismatches: 2, Indels: 9
0.88 0.02 0.10
Matches are distributed among these distances:
60 7 0.09
61 14 0.17
62 7 0.09
65 1 0.01
66 51 0.63
67 1 0.01
ACGTcount: A:0.43, C:0.22, G:0.01, T:0.34
Consensus pattern (61 bp):
ACCCTAATTTATTTAAAACCCTAAACACTAACTTAATTTATTTAAAAACCATAAACTCTAA
Done.