Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 57 of 279
Found at i:19011856 original size:39 final size:39
Alignment explanation
Indices: 19011812--19011916 Score: 122
Period size: 39 Copynumber: 2.7 Consensus size: 39
19011802 GACTTTATAA
19011812 TGGTGTTATATCCGGGCT-AAGTCCCAAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAAGTCCCAAA-GCATTCGTGC
* ** * *
19011851 TGGTGTTATATCCGGGGTAAAGTCCCGCAGCCTTTGTGC
1 TGGTGTTATATCCGGGCTAAAGTCCCAAAGCATTCGTGC
* *
19011890 TGGTATTATATCCAGGCTTAAAGTCCC
1 TGGTGTTATATCCGGGC-TAAAGTCCC
19011917 GCATGCTTTG
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 39 0.70
40 17 0.30
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAAGTCCCAAAGCATTCGTGC
Found at i:19011912 original size:40 final size:39
Alignment explanation
Indices: 19011847--19011933 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 39
19011837 AAAGGCATTC
* *
19011847 GTGCTGGTGTTATATCCGGGGTAAAGTCCCGCA-GCCTTT
1 GTGCTGGTATTATATCCGGCGTAAAGTCCCGCATG-CTTT
*
19011886 GTGCTGGTATTATATCCAGGCTTAAAGTCCCGCATGCTTT
1 GTGCTGGTATTATATCC-GGCGTAAAGTCCCGCATGCTTT
*
19011926 GTGGTGGT
1 GTGCTGGT
19011934 GATTGGATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
39 16 0.38
40 25 0.60
41 1 0.02
ACGTcount: A:0.16, C:0.21, G:0.30, T:0.33
Consensus pattern (39 bp):
GTGCTGGTATTATATCCGGCGTAAAGTCCCGCATGCTTT
Found at i:19017529 original size:49 final size:47
Alignment explanation
Indices: 19017450--19017858 Score: 588
Period size: 47 Copynumber: 8.6 Consensus size: 47
19017440 TATTTGAATA
*
19017450 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
19017497 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * * *
19017546 AATGAGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
19017593 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
19017642 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
19017691 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
19017738 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
19017785 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
19017832 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
19017859 TCTCGAAGGG
Statistics
Matches: 334, Mismatches: 22, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 197 0.59
49 135 0.40
50 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:19017619 original size:96 final size:94
Alignment explanation
Indices: 19017450--19017858 Score: 588
Period size: 96 Copynumber: 4.3 Consensus size: 94
19017440 TATTTGAATA
*
19017450 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* *
19017515 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * * * *
19017546 AATGAGAAAGTGTATATATGTGATAAGGCCTAATAGTCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
19017611 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
19017642 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
19017706 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
19017738 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATTAATGTGAAAGTGTATAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
19017802 ATGTGATAAGGCCGAATGGCCAATGTGATG
65 ATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
19017832 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
19017859 TCTCGAAGGG
Statistics
Matches: 284, Mismatches: 23, Indels: 14
0.88 0.07 0.04
Matches are distributed among these distances:
93 2 0.01
94 95 0.33
96 144 0.51
97 1 0.00
98 41 0.14
99 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:19020353 original size:38 final size:38
Alignment explanation
Indices: 19020289--19020363 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
19020279 AATCCGAGTT
*
19020289 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
19020327 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
19020364 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:19020481 original size:40 final size:40
Alignment explanation
Indices: 19020426--19020777 Score: 506
Period size: 40 Copynumber: 8.8 Consensus size: 40
19020416 CGATGAATCA
19020426 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
*
19020466 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
* *
19020506 GGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
* * * * *
19020546 GGCTAAGTTCCGAAAAGCATTCGTGCTAGTGATGTATCTG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
*
19020586 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
19020626 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
* ** *
19020666 GGCTAAGTTCAAAAGAGCATTCGTGCTAGTGATATATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
* ** * * *
19020706 TGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
* * *
19020746 GGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
19020778 CGTGTATTCG
Statistics
Matches: 283, Mismatches: 29, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 283 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
Found at i:19023407 original size:49 final size:49
Alignment explanation
Indices: 19023341--19023676 Score: 481
Period size: 47 Copynumber: 7.0 Consensus size: 49
19023331 ATGATAGTAT
* *
19023341 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
19023390 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
19023439 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
19023488 GGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAA
1 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
* * * *
19023535 GGCCTAATAGCCGATATGATGAATGTGAAAGTG--TATATATGTGATAA
1 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
* * * * * *
19023582 GGCCTAATAGCCGATATGATGAATGTGAAAGTG--TATATATGTGACAG
1 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
* * *
19023629 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAA
1 GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
19023676 G
1 G
19023677 TCCCGAAGGG
Statistics
Matches: 268, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
47 136 0.51
48 1 0.00
49 131 0.49
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (49 bp):
GGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAA
Found at i:19029757 original size:46 final size:44
Alignment explanation
Indices: 19029627--19029842 Score: 159
Period size: 46 Copynumber: 4.7 Consensus size: 44
19029617 ATATCTGTGT
* *
19029627 CGATGCAATGTCCCAGACATGGTCTTACACT-GACACTCTC-GTAGT
1 CGATGC-ATGTCCCAGACAT-GTCTTACACTAG-CACTCTCTGAAGC
* * * * *
19029672 TGATGAATGTCCCACACATGTCTTATACTGGCTTACGTCT-TGAAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC--AC-TCTCTGAAGC
*
19029718 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACTC-TCTGAA-GC
* * * * * **
19029764 CGATGCCATGTACCAGAGATGGTCTTACACTGGCTCTCACAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCTC--TGAAGC
*
19029812 TGATGCATGTCCCAGACATGTCTTACACTAG
1 CGATGCATGTCCCAGACATGTCTTACACTAG
19029843 GTCACAATAG
Statistics
Matches: 135, Mismatches: 24, Indels: 23
0.74 0.13 0.13
Matches are distributed among these distances:
43 12 0.09
44 16 0.12
45 9 0.07
46 51 0.38
47 25 0.19
48 21 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (44 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACTCTCTGAAGC
Found at i:19032614 original size:49 final size:50
Alignment explanation
Indices: 19032527--19032708 Score: 197
Period size: 51 Copynumber: 3.6 Consensus size: 50
19032517 TATTGTGAGG
* * *** * *
19032527 TCACGTGTGTAGTACTAACTGCAGGCTACTACATATACCGAATTA-TT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCG-ATAACTTCGA
** *
19032576 TTGCATGTGTAGTACTAAGTGCAGGCTACTGTGCATACCCGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCATA-CCGATAACTTCGA
* *
19032627 TCACATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCATA-CCGATAACTTCGA
* *
19032678 TCACGTGTGTAGTACCAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
19032709 CGTGCATCAG
Statistics
Matches: 112, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 32 0.29
50 5 0.04
51 75 0.67
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCGATAACTTCGA
Found at i:19032645 original size:51 final size:51
Alignment explanation
Indices: 19032579--19032708 Score: 215
Period size: 51 Copynumber: 2.5 Consensus size: 51
19032569 TTATTGGTTG
*
19032579 CATGTGTAGTACTAAGTGCAGGCTACTGTGCATACCCGATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCA
* *
19032630 CATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCA
* *
19032681 CGTGTGTAGTACCAAGTGCAGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
19032709 CGTGCATCAG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 73 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (51 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCGATCA
Found at i:19050638 original size:18 final size:18
Alignment explanation
Indices: 19050617--19050651 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
19050607 ACTCTTGTAC
*
19050617 TCATGTTCATCTCCATCA
1 TCATCTTCATCTCCATCA
*
19050635 TCATCTTCATCTTCATC
1 TCATCTTCATCTCCATC
19050652 TCTACCTCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.34, G:0.03, T:0.43
Consensus pattern (18 bp):
TCATCTTCATCTCCATCA
Found at i:19051424 original size:13 final size:13
Alignment explanation
Indices: 19051406--19051431 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19051396 GAGCAATCGT
19051406 ACACGGGCGTGTC
1 ACACGGGCGTGTC
19051419 ACACGGGCGTGTC
1 ACACGGGCGTGTC
19051432 CCTGTCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:19059571 original size:4 final size:4
Alignment explanation
Indices: 19059562--19059604 Score: 68
Period size: 4 Copynumber: 10.8 Consensus size: 4
19059552 TAAAATAATA
* *
19059562 ATAC ATAC ATAC ATAC ATAC ATAC ATAT ATAC ATAC ATTC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
19059605 GCGATTTTAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (4 bp):
ATAC
Found at i:19068873 original size:63 final size:63
Alignment explanation
Indices: 19068773--19068896 Score: 196
Period size: 63 Copynumber: 2.0 Consensus size: 63
19068763 AGCAACAAAT
* * *
19068773 TAGCCTCCAATCCATAGTTTTCACTCATTGATAATCATGGTAGAGAAAGGACTAACAATAAAC
1 TAGCCTCCAATCCATAATTTCCACTCATTGATAATCATGGTAGAGAAAAGACTAACAATAAAC
*
19068836 TAGCCTCCAATCCATAATTTCCACTTC-TTGATCATCATGGTAGAGAAAAGACTAACAATAA
1 TAGCCTCCAATCCATAATTTCCAC-TCATTGATAATCATGGTAGAGAAAAGACTAACAATAA
19068897 CAAAGTTCAA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
63 54 0.96
64 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.27
Consensus pattern (63 bp):
TAGCCTCCAATCCATAATTTCCACTCATTGATAATCATGGTAGAGAAAAGACTAACAATAAAC
Found at i:19073276 original size:19 final size:16
Alignment explanation
Indices: 19073242--19073289 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
19073232 AAAAAAAGTG
19073242 ACTATTTTAATAATAT
1 ACTATTTTAATAATAT
19073258 ACTATTATT-ATATATAT
1 ACTATT-TTAATA-ATAT
19073275 A-TATTTTATATAATA
1 ACTATTTTA-ATAATA
19073290 CCTAGAACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
15 2 0.07
16 16 0.57
17 10 0.36
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (16 bp):
ACTATTTTAATAATAT
Found at i:19073945 original size:3 final size:3
Alignment explanation
Indices: 19073937--19073976 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
19073927 GAGATTGTTA
19073937 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
19073977 CACTTCTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:19078701 original size:25 final size:25
Alignment explanation
Indices: 19078668--19078728 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
19078658 AAAATTTACA
* *
19078668 ACAATAATATAAAATA-ATGATATGT
1 ACAAAAATATAAAATATA-CATATGT
*
19078693 ACAAAAATAT-ATATATACATATGT
1 ACAAAAATATAAAATATACATATGT
19078717 ACATAAAATATA
1 ACA-AAAATATA
19078729 CACTAATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 13 0.43
25 17 0.57
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.31
Consensus pattern (25 bp):
ACAAAAATATAAAATATACATATGT
Found at i:19079491 original size:25 final size:24
Alignment explanation
Indices: 19079413--19079503 Score: 132
Period size: 25 Copynumber: 3.8 Consensus size: 24
19079403 TTTTTTGGGG
19079413 GGGTTAGGTTTTTCTTTTTTTTTT
1 GGGTTAGGTTTTTCTTTTTTTTTT
19079437 GGGGTTAGGTTTTTCTTTTTTTTTT
1 -GGGTTAGGTTTTTCTTTTTTTTTT
19079462 GGGTTAGGTTTTTTTCTTTTTTTTTT
1 GGGTTAGG--TTTTTCTTTTTTTTTT
*
19079488 -GGTTAAGTTTTT-TTTT
1 GGGTTAGGTTTTTCTTTT
19079504 GGGAGGGCTT
Statistics
Matches: 63, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
22 4 0.06
23 5 0.08
24 8 0.13
25 30 0.48
26 16 0.25
ACGTcount: A:0.05, C:0.03, G:0.21, T:0.70
Consensus pattern (24 bp):
GGGTTAGGTTTTTCTTTTTTTTTT
Found at i:19080552 original size:74 final size:76
Alignment explanation
Indices: 19080370--19080554 Score: 277
Period size: 77 Copynumber: 2.4 Consensus size: 76
19080360 GTGATCTGAA
19080370 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCA-C
*
19080435 ATGTGAACCGAG
65 ACGTGAACCGAG
*
19080447 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACCTCA-A
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCACA
* *
19080510 CGTG-TCTTGAG
66 CGTGAAC-CGAG
* *
19080521 GCTCAACTCACCTCTCACAATATGAGCTGATTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTT
19080555 GAAAAAGTAG
Statistics
Matches: 100, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
73 1 0.01
74 38 0.38
76 21 0.21
77 40 0.40
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (76 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCACA
CGTGAACCGAG
Found at i:19080716 original size:71 final size:70
Alignment explanation
Indices: 19080573--19080748 Score: 230
Period size: 71 Copynumber: 2.5 Consensus size: 70
19080563 AGAAATTAAA
* * * * * *
19080573 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAATTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTG
19080637 CCCCG
66 CCCCG
19080642 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAATTAAAAATACCTCAACGT
* **
19080707 GTCTTG
65 GCCCCG
*
19080713 AGGCTCAACTTA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
19080749 CCTTGAAAAG
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.06
71 62 0.66
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.30
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTG
CCCCG
Found at i:19081016 original size:75 final size:75
Alignment explanation
Indices: 19080874--19081814 Score: 1217
Period size: 75 Copynumber: 12.6 Consensus size: 75
19080864 GAGTACCTGT
* * * * **
19080874 ATTTCTCGCAATATGAGTTGA---ATTTTGAAAACAGAAATTGAAATTAGCTCAGC-TTGTCCCG
1 ATTTCTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCACT-TCTTG
*
19080935 ATGCTCAACTC
65 AGGCTCAACTC
** * * *
19080946 ACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCA-TGTCTT
1 ATTTCTCGCAATATGAGTTGATTTTTTTTGACA-ACAGAAATTGAAATTACCTCAGCACT-TCTT
19081009 GAGGCTCAACTC
64 GAGGCTCAACTC
* * *
19081021 ATTTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCA-TGTCTT
1 ATTTCTCGCAATATGAGTTGATTTTTTTTGACA-ACAGAAATTGAAATTACCTCAGCACT-TCTT
19081084 GAGGCTCAACTC
64 GAGGCTCAACTC
* * *
19081096 ATTTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCA-TGTCTT
1 ATTTCTCGCAATATGAGTTGATTTTTTTTGACA-ACAGAAATTGAAATTACCTCAGCACT-TCTT
19081159 GAGGCTCAACTC
64 GAGGCTCAACTC
* *
19081171 ATTTCTCGCAATATGAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACCTCAGC-GTGTCCT
1 ATTTCTCGCAATATGAGTTGA-TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCACT-TCTT
*
19081235 GAAGCTCAACTC
64 GAGGCTCAACTC
** * * * * * **
19081247 ACCTCTCGCAATATGAGTTGA---ATTTTAAAAACAGAAATCGAAATTACCTCAGC-GTGTCCCG
1 ATTTCTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCACT-TCTTG
19081308 AGGCTCAACTC
65 AGGCTCAACTC
** *
19081319 ACCTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCTCAGCACTTCTTG
1 ATTTCTCGCAATATGAGTTGA-TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCACTTCTTG
19081383 AGGCTCAACTC
65 AGGCTCAACTC
*
19081394 ATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCTCAGCACTTCTTG
1 ATTTCTCGCAATATGAGTTGA-TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCACTTCTTG
19081458 AGGCTCAACTC
65 AGGCTCAACTC
*
19081469 ATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCTCAGCACTTCTTG
1 ATTTCTCGCAATATGAGTTGA-TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCACTTCTTG
19081533 AGGCTCAACTC
65 AGGCTCAACTC
*
19081544 ATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCTCAGCACTTCTTG
1 ATTTCTCGCAATATGAGTTGA-TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCACTTCTTG
19081608 AGGCTCAACTC
65 AGGCTCAACTC
*
19081619 ATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCTCAGCACTTCTTG
1 ATTTCTCGCAATATGAGTTGA-TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCACTTCTTG
19081683 AGGCTCAACTC
65 AGGCTCAACTC
*
19081694 ATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCTCAGCACTTCTTG
1 ATTTCTCGCAATATGAGTTGA-TTTTTTTTGACAACAGAAATTGAAATTACCTCAGCACTTCTTG
19081758 AGGCTCAACTC
65 AGGCTCAACTC
19081769 ATTTCTCGCAATATGAGTTGA-TTTTTTTGA-AAGGCAGAAATTGAAA
1 ATTTCTCGCAATATGAGTTGATTTTTTTTGACAA--CAGAAATTGAAA
19081815 AACGGAAATT
Statistics
Matches: 820, Mismatches: 34, Indels: 27
0.93 0.04 0.03
Matches are distributed among these distances:
72 87 0.11
73 8 0.01
74 14 0.02
75 631 0.77
76 70 0.09
77 10 0.01
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (75 bp):
ATTTCTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCACTTCTTGA
GGCTCAACTC
Found at i:19081092 original size:150 final size:149
Alignment explanation
Indices: 19080874--19082124 Score: 1230
Period size: 150 Copynumber: 8.2 Consensus size: 149
19080864 GAGTACCTGT
* * * * *
19080874 ATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTAGCTCAGCTTGTCCCGAT
1 ATTTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAG
* *
19080937 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTCAG
66 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAA-ACAGAAATTGAAATTACCTCAG
19081001 CATGTCTTGAGGCTCAACTC
130 CATGTCTTGAGGCTCAACTC
* * *
19081021 ATTTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGA
1 ATTTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAATTACCTCAGCATGTCCTGA
** * *
19081086 GGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTCA
65 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAA-ACAGAAATTGAAATTACCTCA
19081150 GCATGTCTTGAGGCTCAACTC
129 GCATGTCTTGAGGCTCAACTC
* *
19081171 ATTTCTCGCAATATGAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTG
1 ATTTCTCGCAATATGAGTTGA--TTTTTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCCTG
* * * *
19081236 AAGCTCAACTCACCTCTCGCAATATGAGTTGA---ATTTTAAAAACAGAAATCGAAATTACCTCA
64 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAATTACCTCA
* **
19081298 GCGTGTCCCGAGGCTCAACTC
129 GCATGTCTTGAGGCTCAACTC
** * * *
19081319 ACCTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCTCAGCACT-TCTT
1 ATTTCTCGCAATATGAGTTGA--TTTTTTTGAAAACAGAAATTGAAATTACCTCAGCA-TGTCCT
** * *
19081382 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCT
63 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGAAAACAGAAATTGAAATTACCT
19081446 CAGCACT-TCTTGAGGCTCAACTC
127 CAGCA-TGTCTTGAGGCTCAACTC
* * *
19081469 ATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCTCAGCACT-TCTT
1 ATTTCTCGCAATATGAGTTGA--TTTTTTTGAAAACAGAAATTGAAATTACCTCAGCA-TGTCCT
** * *
19081532 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCT
63 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGAAAACAGAAATTGAAATTACCT
19081596 CAGCACT-TCTTGAGGCTCAACTC
127 CAGCA-TGTCTTGAGGCTCAACTC
* * *
19081619 ATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCTCAGCACT-TCTT
1 ATTTCTCGCAATATGAGTTGA--TTTTTTTGAAAACAGAAATTGAAATTACCTCAGCA-TGTCCT
** * *
19081682 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCT
63 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGAAAACAGAAATTGAAATTACCT
19081746 CAGCACT-TCTTGAGGCTCAACTC
127 CAGCA-TGTCTTGAGGCTCAACTC
*
19081769 ATTTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACC
1 ATTTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATT--------GAAA-T-----TACC
* * * * * * *
19081834 TCGGCGTGTGACCTAAGGCTCAACTCGCCGCTCGCAATACGAGTTGA--TTTTTTGACAACAGAA
51 TCAGCATGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAA
** *
19081897 ATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTC
114 ATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTC
** ** *
19081933 ACCTCTCGCAATATGAGTCAATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAATACCT
1 ATTTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATT--------GAAA-T----TACCT
* * * *
19081998 CGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAA
52 CAGCATGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAA-ACAGAA
* * *
19082063 ATTGAAATTACCTCAGCGTATCATGAGGCTCAACTC
114 ATTGAAATTACCTCAGCATGTCTTGAGGCTCAACTC
**
19082099 ACCTCTCGCAATATGAGTTGATTTTT
1 ATTTCTCGCAATATGAGTTGATTTTT
19082125 AAAAAGTAGA
Statistics
Matches: 997, Mismatches: 72, Indels: 51
0.89 0.06 0.05
Matches are distributed among these distances:
147 69 0.07
148 84 0.08
149 21 0.02
150 477 0.48
151 70 0.07
152 10 0.01
158 4 0.00
159 1 0.00
163 70 0.07
164 90 0.09
165 9 0.01
166 92 0.09
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (149 bp):
ATTTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAG
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAATTACCTCAGC
ATGTCTTGAGGCTCAACTC
Found at i:19081571 original size:225 final size:228
Alignment explanation
Indices: 19080874--19082124 Score: 1274
Period size: 225 Copynumber: 5.5 Consensus size: 228
19080864 GAGTACCTGT
* * * **
19080874 ATTTCTCGCAATATGAGTTGA----ATTTTGAAAACAGAAATTGAAATTAGCTCAGC-TTGTCCC
1 ATTTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAATTACCTCAGCACTGTCTT
* ** * * *
19080934 GATGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAAAAATTGAAAATACC
66 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGACA-ACAGAAATTGAAATTACC
* *
19080997 TCAGCA-TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAA
130 TCAGCACTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAAA-ACAGAAA
*
19081061 TTGAAAATACCTCAGCA-TGTCTTGAGGCTCAACTC
194 -TGAAATTACCTCAGCACTGTCTTGAGGCTCAACTC
* *
19081096 ATTTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCA-TGTCT
1 ATTTCTCGCAATATGAGTTGATTTTTTTTTGAAA-ACAGAAATTGAAATTACCTCAGCACTGTCT
19081158 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACC
65 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACC
* * * ** * *
19081223 TCAGC-GTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTAAAAACAGAAAT
130 TCAGCACTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAAAACAGAAAT
* **
19081285 CGAAATTACCTCAGC-GTGTCCCGAGGCTCAACTC
195 -GAAATTACCTCAGCACTGTCTTGAGGCTCAACTC
** * *
19081319 ACCTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCTCAGCACT-TCTT
1 ATTTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAATTACCTCAGCACTGTCTT
*
19081382 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCT
66 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACCT
*
19081446 CAGCACT-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA
131 CAGCACTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTTTTAAAACAGAAA
19081510 TGAAATTACCTCAGCACT-TCTTGAGGCTCAACTC
194 TGAAATTACCTCAGCACTGTCTTGAGGCTCAACTC
* *
19081544 ATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCTCAGCACT-TCTT
1 ATTTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAATTACCTCAGCACTGTCTT
*
19081607 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCT
66 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACCT
*
19081671 CAGCACT-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA
131 CAGCACTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--TTTTTTTTAAAACAGAAA
19081735 TGAAATTACCTCAGCACT-TCTTGAGGCTCAACTC
194 TGAAATTACCTCAGCACTGTCTTGAGGCTCAACTC
* *
19081769 ATTTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACC
1 ATTTCTCGCAATATGAGTTGATTTTTTT------------TTG-AAAACAGAAATTGAAATTACC
* * * * **** *
19081834 TCGGC-GTGTGACCTAAGGCTCAACTCGCCGCTCGCAATACGAGTTGA---TTTTTTGACAACAG
53 TCAGCACTGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGACAACAG
** * ** **
19081895 AAATTGAAATTACCTCAG-TGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTT
116 AAATTGAAATTACCTCAGCACTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
* * * * *
19081959 TTGAAAGGCAGAAATTGAAAAACGGAAATTGAAATACCTCGGC-GTGTGACCTGAGGCTCAACTC
181 TTTAAA-ACAGAAA-T--------GAAA-T----TACCTCAGCACTGT--CTTGAGGCTCAACTC
**** * * *
19082023 GCCGCTCGCAATATGAGTTGA-TTTTTTTTGAAAGACAGAAATTGAAATTACCTCAGC-GTATCA
1 ATTTCTCGCAATATGAGTTGATTTTTTTTTGAAA-ACAGAAATTGAAATTACCTCAGCACTGTCT
**
19082086 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
65 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
19082125 AAAAAGTAGA
Statistics
Matches: 888, Mismatches: 82, Indels: 98
0.83 0.08 0.09
Matches are distributed among these distances:
222 70 0.08
223 126 0.14
224 22 0.02
225 342 0.39
226 71 0.08
227 10 0.01
237 11 0.01
238 32 0.04
239 92 0.10
240 3 0.00
241 55 0.06
242 2 0.00
247 4 0.00
248 1 0.00
251 1 0.00
252 9 0.01
253 6 0.01
254 31 0.03
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (228 bp):
ATTTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAATTACCTCAGCACTGTCTT
GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACCT
CAGCACTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAAAACAGAAATG
AAATTACCTCAGCACTGTCTTGAGGCTCAACTC
Found at i:19081941 original size:73 final size:75
Alignment explanation
Indices: 19081819--19081979 Score: 193
Period size: 73 Copynumber: 2.1 Consensus size: 75
19081809 TTGAAAAACG
* * **
19081819 GAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCGCTCGCAATACGAGTTGA-TT
1 GAAATTGAAAATACCTC-GAGTGTGACCTAAGGCTCAACTCACCGCTCGCAATACGAGTCAATTT
19081883 TTTTGACAA-CA
65 TTTTGA-AAGCA
* * * * *
19081894 GAAATTGAAATTACCTC-AGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTT
1 GAAATTGAAAATACCTCGAGTGTGACCTAAGGCTCAACTCACCGCTCGCAATACGAGTCAATTTT
19081958 TTTGAAAGGCA
66 TTTGAAA-GCA
19081969 GAAATTGAAAA
1 GAAATTGAAAA
19081980 ACGGAAATTG
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
73 37 0.51
74 8 0.11
75 28 0.38
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (75 bp):
GAAATTGAAAATACCTCGAGTGTGACCTAAGGCTCAACTCACCGCTCGCAATACGAGTCAATTTT
TTTGAAAGCA
Found at i:19082047 original size:90 final size:90
Alignment explanation
Indices: 19081894--19082069 Score: 257
Period size: 90 Copynumber: 2.0 Consensus size: 90
19081884 TTTGACAACA
* *
19081894 GAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAA-TTTT
1 GAAATTGAAATTACCTCAGTGTGACCTGAGGCTCAACTCACCGCTCGCAATATGAGTCAATTTTT
*
19081958 TTTGAAAGGCAGAAATTGAAAAACG
66 TTTGAAAGACAGAAATTGAAAAACG
* * **
19081983 GAAATTGAAA-TACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATATGAGTTGATTT
1 GAAATTGAAATTACCTC--AGTGTGACCTGAGGCTCAACTCACCGCTCGCAATATGAGTCAATTT
19082047 TTTTTGAAAGACAGAAATTGAAA
64 TTTTTGAAAGACAGAAATTGAAA
19082070 TTACCTCAGC
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
88 6 0.08
89 10 0.13
90 37 0.48
91 24 0.31
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (90 bp):
GAAATTGAAATTACCTCAGTGTGACCTGAGGCTCAACTCACCGCTCGCAATATGAGTCAATTTTT
TTTGAAAGACAGAAATTGAAAAACG
Found at i:19082107 original size:76 final size:76
Alignment explanation
Indices: 19081973--19082124 Score: 216
Period size: 76 Copynumber: 2.0 Consensus size: 76
19081963 AAGGCAGAAA
* * * * *
19081973 TTGAAAAACGGAAATTGAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATATG
1 TTGAAAAACAGAAATTGAAATACCTCAGCGTAT-ACATGAGGCTCAACTCACCGCTCGCAATATG
19082038 AGTTGATTTTTT
65 AGTTGATTTTTT
* *
19082050 TTGAAAGACAGAAATTGAAATTACCTCAGCGTAT-CATGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAA-TACCTCAGCGTATACATGAGGCTCAACTCACCGCTCGCAATATG
19082114 AGTTGATTTTT
65 AGTTGATTTTT
19082125 AAAAAGTAGA
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
76 38 0.57
77 18 0.27
78 11 0.16
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (76 bp):
TTGAAAAACAGAAATTGAAATACCTCAGCGTATACATGAGGCTCAACTCACCGCTCGCAATATGA
GTTGATTTTTT
Found at i:19082138 original size:164 final size:164
Alignment explanation
Indices: 19081698--19082124 Score: 655
Period size: 164 Copynumber: 2.6 Consensus size: 164
19081688 CAACTCATTT
* * *
19081698 CTCGCAATATGAGTTGATTTTTTTTTTACAACAGAAA-TGAAATTACCTCAGCACTTCTTGAGGC
1 CTCGCAATATGAGTTGA-TTTTTTTTGACAACAGAAATTGAAATTACCTCAGC-GTTCATGAGGC
**
19081762 TCAACTCATTTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGA
64 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGA
19081827 AAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCG
128 AAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCG
* * *
19081864 CTCGCAATACGAGTTGA--TTTTTTGACAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCT
1 CTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGT-TCATGAGGCT
**
19081927 CAACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG-A
65 CAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAA
*
19081991 AATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCG
129 AATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCG
*
19082027 CTCGCAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAATTACCTCAGCGTATCATGAGGC
1 CTCGCAATATGAGTTGATTTTTTTTGACA-ACAGAAATTGAAATTACCTCAGCGT-TCATGAGGC
19082092 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
64 TCAACTCACCTCTCGCAATATGAGTTGATTTTT
19082125 AAAAAGTAGA
Statistics
Matches: 239, Mismatches: 17, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
163 69 0.29
164 82 0.34
165 14 0.06
166 74 0.31
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (164 bp):
CTCGCAATATGAGTTGATTTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTTCATGAGGCTC
AACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAA
TACCTCGGCGTGTGACCTAAGGCTCAACTCGCCG
Found at i:19082192 original size:54 final size:55
Alignment explanation
Indices: 19082092--19082197 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
19082082 ATCATGAGGC
* * *
19082092 TCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* *
19082146 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGTTGATT-TTGAAAAAGCAGAAATTGAAAA
19082198 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 35 0.78
55 10 0.22
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGTTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:19082204 original size:13 final size:13
Alignment explanation
Indices: 19082177--19082210 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
19082167 GAGTTGATTC
*
19082177 TTGAACAACATAAA
1 TTGAA-AACAGAAA
19082191 TTGAAAACAGAAA
1 TTGAAAACAGAAA
19082204 TTGAAAA
1 TTGAAAA
19082211 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:19082309 original size:140 final size:141
Alignment explanation
Indices: 19082050--19082310 Score: 427
Period size: 140 Copynumber: 1.9 Consensus size: 141
19082040 TTGATTTTTT
* *
19082050 TTGAAAGACAGAAATTGAAATTACCTCAGCGTATCATGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTATCATGAGGCTCAACTCACCTCTCACAATATGA
* *
19082115 GTTGATTTTTAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
66 GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
19082180 AACAACATAAA
131 AACAACATAAA
* * *
19082191 TTGAAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGGGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAGACAGAAATTGAAAATACCTCAGCGTATCATGAGGCTCAACTCACCTCTCACAATATGA
*
19082255 GCTGATTTTGAAAAAGTAGAAATTAAAAGGCTT-AACTCACCTCTCGCAATATGAGT
66 GCTGATTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGT
19082311 CAATTTAAAA
Statistics
Matches: 111, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
140 103 0.93
141 8 0.07
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (141 bp):
TTGAAAGACAGAAATTGAAAATACCTCAGCGTATCATGAGGCTCAACTCACCTCTCACAATATGA
GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
AACAACATAAA
Found at i:19082425 original size:71 final size:70
Alignment explanation
Indices: 19082282--19082457 Score: 230
Period size: 71 Copynumber: 2.5 Consensus size: 70
19082272 AGAAATTAAA
* * * * * *
19082282 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAATTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTG
19082346 CCCCG
66 CCCCG
19082351 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAATTAAAAATACCTCAACGT
* **
19082416 GTCTTG
65 GCCCCG
*
19082422 AGGCTCAACTTA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
19082458 CCTTGAAAAG
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.06
71 62 0.66
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.30
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTG
CCCCG
Found at i:19086007 original size:62 final size:62
Alignment explanation
Indices: 19085910--19086033 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
19085900 TCAGCCGTTC
19085910 GAACAACTTCTTGAGGTTCACTACATGCTCTTCTTCCCCTCGGGATTTAGCAATCATGTCGT
1 GAACAACTTCTTGAGGTTCACTACATGCTCTTCTTCCCCTCGGGATTTAGCAATCATGTCGT
19085972 GAACAACTTCTTGAGGTTCACTACATGCTCTTCTTCCCCTCGGGATTTAGCAATCATGTCGT
1 GAACAACTTCTTGAGGTTCACTACATGCTCTTCTTCCCCTCGGGATTTAGCAATCATGTCGT
19086034 CGACGTAGAC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (62 bp):
GAACAACTTCTTGAGGTTCACTACATGCTCTTCTTCCCCTCGGGATTTAGCAATCATGTCGT
Found at i:19100947 original size:17 final size:17
Alignment explanation
Indices: 19100927--19100959 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
19100917 AGGGCATCTT
19100927 AAAA-AAAAAGAGAAAAG
1 AAAAGAAAAA-AGAAAAG
19100944 AAAAGAAAAAAGAAAA
1 AAAAGAAAAAAGAAAA
19100960 AGAGAGAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAAAGAAAAG
Found at i:19102031 original size:73 final size:73
Alignment explanation
Indices: 19101906--19102071 Score: 251
Period size: 73 Copynumber: 2.3 Consensus size: 73
19101896 TTTCCGTTTC
*
19101906 TTCAATTTATGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTCAATTTATGCTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGC
*
19101971 TGAGGTAAT
65 CGAGGTAAT
* *
19101980 TTCAATTTATGCTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGGCACGCC
1 TTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCC
*
19102045 GAGGTATT
66 GAGGTAAT
* * *
19102053 TTTAATTTCTGTTTTTCAA
1 TTCAATTTATGCTTTTCAA
19102072 TTTCTGCTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
73 67 0.80
74 17 0.20
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (73 bp):
TTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGACACGCC
GAGGTAAT
Found at i:19102095 original size:13 final size:13
Alignment explanation
Indices: 19102051--19102095 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
19102041 CGCCGAGGTA
19102051 TTTTTAATTTCTG
1 TTTTTAATTTCTG
19102064 TTTTTCAATTTCTG
1 TTTTT-AATTTCTG
*
19102078 CTTTTAATTTCTG
1 TTTTTAATTTCTG
19102091 TTTTT
1 TTTTT
19102096 CAAAAATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.13, C:0.11, G:0.07, T:0.69
Consensus pattern (13 bp):
TTTTTAATTTCTG
Found at i:19102118 original size:100 final size:101
Alignment explanation
Indices: 19101982--19102267 Score: 436
Period size: 100 Copynumber: 2.9 Consensus size: 101
19101972 GAGGTAATTT
* * * *
19101982 CAATTTATGCTTTTCAAAAATTAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGGCACGCCGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
* *
19102047 GGTATTTTTAATTTCTGTTTTTCAATTTCTG-CTTT
66 GGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTA
* *
19102082 TAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
*
19102147 GGTATTTTCAATTTCTGTTTTTCAATTTTTGCCTTA
66 GGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTA
* *
19102183 CAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
19102246 GGTATTTTCAATTT-TCGTTTTT
66 GGTATTTTCAATTTCT-GTTTTT
19102268 TTAATTTATG
Statistics
Matches: 171, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
98 1 0.01
99 67 0.39
100 88 0.51
101 15 0.09
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (101 bp):
CAATTTCTGCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGA
GGTATTTTCAATTTCTGTTTTTCAATTTCTGCCTTA
Found at i:19102386 original size:73 final size:73
Alignment explanation
Indices: 19102270--19102941 Score: 883
Period size: 73 Copynumber: 9.2 Consensus size: 73
19102260 TCGTTTTTTT
* * * *
19102270 AATTTATGTTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGA-CTCTCAGGACACGCTG
1 AATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC-CTCAAGACACGCTG
19102334 AGGTAATTTC
64 AGGTAATTTC
* * * *
19102344 AATTTTTGTTTGTC-AAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 AATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
*
19102408 GGTATTTTC
65 GGTAATTTC
* *
19102417 AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGA
1 AATTTCTG-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
19102482 GGTAATTTC
65 GGTAATTTC
* *
19102491 AATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 AATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
*
19102555 GGTATTTTC
65 GGTAATTTC
* *
19102564 AATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTG
1 AATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
19102629 AGGTAATTTC
64 AGGTAATTTC
* *
19102639 AATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGA
1 AATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
*
19102703 GGTATTTTC
65 GGTAATTTC
* * * *
19102712 AATTTCTATCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACTTCAA-A-ACGCTG
1 AATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
* *
19102775 AGATAATTTT
64 AGGTAATTTC
* * * * * *
19102785 TATTTCTG-TTTC-AAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
*
19102848 GTATTTTC
66 GTAATTTC
* *
19102856 AATTTCTGTTTTTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGA
1 AATTTCTG-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
19102921 GGTAATTTC
65 GGTAATTTC
19102930 AATTTCTGTTTT
1 AATTTCTGTTTT
19102942 TTTTTAATTT
Statistics
Matches: 520, Mismatches: 62, Indels: 33
0.85 0.10 0.05
Matches are distributed among these distances:
69 33 0.06
70 1 0.00
71 23 0.04
73 218 0.42
74 143 0.28
75 102 0.20
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (73 bp):
AATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
GTAATTTC
Found at i:19102655 original size:148 final size:148
Alignment explanation
Indices: 19102278--19102940 Score: 1043
Period size: 148 Copynumber: 4.5 Consensus size: 148
19102268 TTAATTTATG
*
19102278 TTTCTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTG-ACTCTCAGGACACGCTGAGGTAATT
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAAC-CTCAGGACACGCTGAGGTAATT
*
19102342 TCAATTTTTGTTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTG
64 TCAATTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTG
*
19102407 AGGTATTTTCAATTTCTGTT
129 AGGTATTTTCAATTTCTGTC
* *
19102427 TTTC-AAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTC
*
19102491 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
66 AATTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
19102556 GTATTTTCAATTTCTGTC
131 GTATTTTCAATTTCTGTC
* *
19102574 TTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGCTGAGGTAATTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTC
*
19102639 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
66 AATTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
*
19102704 GTATTTTCAATTTCTATC
131 GTATTTTCAATTTCTGTC
* * * * *
19102722 TTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACTTCA--AAACGCTGAGATAATTTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTC
* * * * *
19102785 TATTTCTG-TT-TCAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAG
66 AATTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
*
19102848 GTATTTTCAATTTCTGTT
131 GTATTTTCAATTTCTGTC
* *
19102866 TTTC-AAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTC
*
19102930 AATTTCTGTTT
66 AATTTTTGTTT
19102941 TTTTTTAATT
Statistics
Matches: 478, Mismatches: 31, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
143 36 0.08
144 69 0.14
145 24 0.05
146 23 0.05
147 139 0.29
148 183 0.38
149 4 0.01
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (148 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAGGACACGCTGAGGTAATTTC
AATTTTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
GTATTTTCAATTTCTGTC
Found at i:19103142 original size:15 final size:14
Alignment explanation
Indices: 19103106--19103138 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
19103096 CGCTGAGGTA
19103106 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
19103120 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
19103134 TTTTC
1 TTTTC
19103139 CAAAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:19103292 original size:92 final size:90
Alignment explanation
Indices: 19102851--19103306 Score: 493
Period size: 91 Copynumber: 5.0 Consensus size: 90
19102841 CGTTGAGGTA
* *
19102851 TTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGG--A
1 TTTTCAATTTATG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
* *
19102913 CACGCTGAGGTAATTTCAATTTCTGTTTT
65 CACGCTGAGGTATTTTCAA-TT-T-TTGT
* * *
19102942 TTTTTAATTTATGTTTCTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA----A
1 TTTTCAATTTATGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
* * * *
19103003 TACGTTGAGGTGTTTTCCATTTTTGT
65 CACGCTGAGGTATTTTCAATTTTTGT
* * * * * * *
19103029 TCTTCAATTTCTGTGTTTCAAAAAAATTAGCTCATATTGCGAGTGGTGAGTTGAGCCT-TGACTC
1 TTTTCAATTTATGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GTC
* *
19103093 ACACGCTGAGGTATTTTCAAATTCTGT
64 ACACGCTGAGGTATTTTCAATTTTTGT
*
19103120 TTTTCAAATTT-TGTTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGG
1 TTTTC-AATTTATG-TTTT-C-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
*
19103184 --ACACGCTGAGGTATTTTCAATTTATTTT
62 TCACACGCTGAGGTATTTTCAATTT-TTGT
19103212 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
1 TTTTCAATTTATGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
* **
19103277 CACGCCGAGGTATTTTCAATTGATGT
65 CACGCTGAGGTATTTTCAATTTTTGT
19103303 TTTT
1 TTTT
19103307 TCTTCTTTTT
Statistics
Matches: 306, Mismatches: 41, Indels: 36
0.80 0.11 0.09
Matches are distributed among these distances:
87 50 0.16
88 3 0.01
89 2 0.01
90 60 0.20
91 79 0.26
92 76 0.25
93 35 0.11
94 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (90 bp):
TTTTCAATTTATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCAC
ACGCTGAGGTATTTTCAATTTTTGT
Found at i:19103307 original size:92 final size:90
Alignment explanation
Indices: 19102851--19103308 Score: 532
Period size: 92 Copynumber: 5.1 Consensus size: 90
19102841 CGTTGAGGTA
* *
19102851 TTTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
19102915 CGCTGAGGTAATTTCAATTTCTGTTTT
66 CGCTGAGGTATTTTCAATTTATG--TT
* * * * *
19102942 TTTTTAATTTATGTTTCTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCA--ATA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * * *
19103005 CGTTGAGGTGTTTTCCATTTTTG-T
66 CGCTGAGGTATTTTCAATTTATGTT
* * * * * * * **
19103029 TCTTCAATTTCTGTGTTTCAAAAAAATTAGCTCATATTGCGAGTGGTGAGTTGAGCCTTGACTCA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GGA
* *
19103094 CACGCTGAGGTATTTTCAAATTCTG-T
64 CACGCTGAGGTATTTTCAATTTATGTT
*
19103120 TTTTCAAATTT-TGTTTTTCCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGG
1 TTTTC-AATTTATGTTTTT-C-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
*
19103184 ACACGCTGAGGTATTTTCAATTTATTTT
63 ACACGCTGAGGTATTTTCAATTTATGTT
*
19103212 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--A
* *
19103277 CACGCCGAGGTATTTTCAATTGATGTT
64 CACGCTGAGGTATTTTCAATTTATGTT
19103304 TTTTC
1 TTTTC
19103309 TTCTTTTTTT
Statistics
Matches: 309, Mismatches: 46, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
87 48 0.16
88 2 0.01
90 62 0.20
91 75 0.24
92 88 0.28
93 34 0.11
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (90 bp):
TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTATTTTCAATTTATGTT
Found at i:19103385 original size:100 final size:101
Alignment explanation
Indices: 19103209--19103392 Score: 273
Period size: 100 Copynumber: 1.8 Consensus size: 101
19103199 TTCAATTTAT
*
19103209 TTTTTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 TTTTTTTCAATTTATGTTTGTC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGG
*
19103274 TCACACGCCGAGGTATTTTCAATTGATGTTTTTTCTTC
64 TCACACACCGAGGTATTTTCAATTGATGTTTTTTCTTC
* * *
19103312 TTTTTTTCAATTTATGCTTTG-C-AAAATCAACTCATATTATGAGAGGTGAGTTGAGTCTCGGGT
1 TTTTTTTCAATTTATG-TTTGTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGT
*
19103375 CACATACCGAGGTATTTT
65 CACACACCGAGGTATTTT
19103393 AAAAATCTGT
Statistics
Matches: 74, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
100 53 0.72
103 17 0.23
104 4 0.05
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.40
Consensus pattern (101 bp):
TTTTTTTCAATTTATGTTTGTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGTC
ACACACCGAGGTATTTTCAATTGATGTTTTTTCTTC
Found at i:19103493 original size:87 final size:87
Alignment explanation
Indices: 19103334--19103558 Score: 208
Period size: 87 Copynumber: 2.6 Consensus size: 87
19103324 TATGCTTTGC
* * * *
19103334 AAAATCAACTCATATTATGAGAGGTGAGTTGAGTCTCGGGTCACATACCGAGGTATTTTAAAAAT
1 AAAATCAACTCATATTACGAGAAGTGAGTTGAGTCTCGGCTCACATACCGAGCTATTTTAAAAAT
*
19103399 CTGTTTTACAAATTTTGTTTTA
66 CTATTTTACAAATTTTGTTTTA
* * * * * **
19103421 AAAATCAACTCATATTGCGAGAAGTGAGTTGAG-CTTTGGCTCACGTGCCGAGCTATTTTCAATT
1 AAAATCAACTCATATTACGAGAAGTGAGTTGAGTC-TCGGCTCACATACCGAGCTATTTTAAAAA
*
19103485 TCTATTTT---AATGTCTGTTTTTA
65 TCTATTTTACAAAT-TTTG-TTTTA
* * * * *
19103507 AAGAGTCAATTCATATTACGAGAAATGAGTTGA-TCTCAGGATCACATGCCGA
1 AA-AATCAACTCATATTACGAGAAGTGAGTTGAGTCTC-GGCTCACATACCGA
19103559 ATAAAGAATA
Statistics
Matches: 112, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
84 3 0.03
85 3 0.03
86 9 0.08
87 97 0.87
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (87 bp):
AAAATCAACTCATATTACGAGAAGTGAGTTGAGTCTCGGCTCACATACCGAGCTATTTTAAAAAT
CTATTTTACAAATTTTGTTTTA
Found at i:19104166 original size:18 final size:18
Alignment explanation
Indices: 19104143--19104198 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
19104133 CCACCACCAA
19104143 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
19104161 CTCCACCA-CCA-A----
1 CTCCACTAGCCACACTTG
19104173 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
19104191 CTCCACTA
1 CTCCACTA
19104199 CCTACTCCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 7 0.23
13 3 0.10
14 1 0.03
16 1 0.03
17 3 0.10
18 15 0.50
ACGTcount: A:0.25, C:0.48, G:0.07, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:19104169 original size:30 final size:30
Alignment explanation
Indices: 19104133--19104218 Score: 154
Period size: 30 Copynumber: 2.9 Consensus size: 30
19104123 CTAACCTTTG
19104133 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
19104163 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
19104193 CCACTACCTACTCCACTAGCCACACT
1 CCACCACCAACTCCACTAGCCACACT
19104219 CCACCACCCC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.27, C:0.50, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:19104799 original size:23 final size:25
Alignment explanation
Indices: 19104773--19104826 Score: 67
Period size: 23 Copynumber: 2.2 Consensus size: 25
19104763 ATTCTAAATT
19104773 CTATATTACGTATATAT-ATT-ATA
1 CTATATTACGTATATATCATTAATA
* * *
19104796 CTATTTTATGTATATATCTTTAATA
1 CTATATTACGTATATATCATTAATA
19104821 CTATAT
1 CTATAT
19104827 CATTTATATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
23 15 0.60
24 2 0.08
25 8 0.32
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (25 bp):
CTATATTACGTATATATCATTAATA
Found at i:19104811 original size:25 final size:26
Alignment explanation
Indices: 19104783--19104841 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
19104773 CTATATTACG
* *
19104783 TATATATATT-ATACTATTTTATGTA
1 TATATATATTAATACTATATCATGTA
* *
19104808 TATATCT-TTAATACTATATCATTTA
1 TATATATATTAATACTATATCATGTA
19104833 TATATATAT
1 TATATATAT
19104842 ATTTTTTACA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
24 2 0.07
25 24 0.89
26 1 0.04
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.54
Consensus pattern (26 bp):
TATATATATTAATACTATATCATGTA
Found at i:19104817 original size:14 final size:15
Alignment explanation
Indices: 19104800--19104845 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 15
19104790 ATTATACTAT
*
19104800 TTTATGTATATATC-
1 TTTATATATATATCA
19104814 TTTA-ATACTATATCA
1 TTTATATA-TATATCA
19104829 TTTATATATATAT-A
1 TTTATATATATATCA
19104843 TTT
1 TTT
19104846 TTTACATGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
13 2 0.07
14 14 0.50
15 9 0.32
16 3 0.11
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.57
Consensus pattern (15 bp):
TTTATATATATATCA
Found at i:19104833 original size:29 final size:28
Alignment explanation
Indices: 19104800--19104909 Score: 88
Period size: 29 Copynumber: 4.0 Consensus size: 28
19104790 ATTATACTAT
*
19104800 TTTATGTATATATCTTTAATACTATATCA
1 TTTATGTATATAT-TTTAATACTATATTA
* ** *
19104829 TTTATATATATATATTTTTTAC-ATGTTA
1 TTTATGTATATAT-TTTAATACTATATTA
19104857 TCTTATGTATATATTTTAAT--TATATTA
1 T-TTATGTATATATTTTAATACTATATTA
* *
19104884 TGTATGTAT-T-TTTT-ACACTATATTA
1 TTTATGTATATATTTTAATACTATATTA
19104909 T
1 T
19104910 GTACATATTT
Statistics
Matches: 65, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
23 1 0.02
24 4 0.06
25 9 0.14
26 7 0.11
27 6 0.09
28 9 0.14
29 29 0.45
ACGTcount: A:0.32, C:0.06, G:0.05, T:0.57
Consensus pattern (28 bp):
TTTATGTATATATTTTAATACTATATTA
Found at i:19104884 original size:22 final size:22
Alignment explanation
Indices: 19104854--19104960 Score: 78
Period size: 22 Copynumber: 4.8 Consensus size: 22
19104844 TTTTTACATG
*
19104854 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
19104876 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTA-A
* *
19104901 CTATATTATGTACATATTTTTAA
1 TTATATTATGTATATA-TTTTAA
* * *
19104924 -TATTATCACGTATTTATTTT--
1 TTA-TATTATGTATATATTTTAA
19104944 TTATA-TATGTATATATT
1 TTATATTATGTATATATT
19104961 ATGTAGTATT
Statistics
Matches: 67, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
19 9 0.13
20 2 0.03
21 2 0.03
22 17 0.25
23 12 0.18
24 13 0.19
25 12 0.18
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.58
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:19104910 original size:25 final size:24
Alignment explanation
Indices: 19104860--19104946 Score: 70
Period size: 24 Copynumber: 3.5 Consensus size: 24
19104850 CATGTTATCT
*
19104860 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
19104886 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
** * *
19104911 TACATA-TTTTTAA-TATTATCACG
1 TATGTATTTTTTAACTA-TATTATG
*
19104934 TATTTATTTTTTA
1 TATGTATTTTTTA
19104947 TATATGTATA
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
22 2 0.04
23 10 0.20
24 17 0.33
25 15 0.29
26 7 0.14
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:19104918 original size:47 final size:49
Alignment explanation
Indices: 19104841--19104946 Score: 119
Period size: 48 Copynumber: 2.2 Consensus size: 49
19104831 TATATATATA
* * * * *
19104841 TATTTTTTACATGTTATCTTATGTATATA-TTTTAAT-TATATTATGTATG
1 TATTTTTTACA-GCTATATTATGTACATATTTTTAATAT-TATCACGTATG
*
19104890 TATTTTTTACA-CTATATTATGTACATATTTTTAATATTATCACGTATT
1 TATTTTTTACAGCTATATTATGTACATATTTTTAATATTATCACGTATG
19104938 TATTTTTTA
1 TATTTTTTA
19104947 TATATGTATA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
47 13 0.27
48 24 0.49
49 12 0.24
ACGTcount: A:0.29, C:0.07, G:0.06, T:0.58
Consensus pattern (49 bp):
TATTTTTTACAGCTATATTATGTACATATTTTTAATATTATCACGTATG
Found at i:19105099 original size:16 final size:15
Alignment explanation
Indices: 19105075--19105109 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
19105065 TAATTATTAT
19105075 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
19105091 TATTTTAATATTTTA
1 TATTCTAATATTTTA
19105106 TATT
1 TATT
19105110 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:19105172 original size:22 final size:22
Alignment explanation
Indices: 19105147--19105219 Score: 76
Period size: 22 Copynumber: 3.2 Consensus size: 22
19105137 AATAATATTC
19105147 TTAGATTTTTTTTACTATCATT
1 TTAGATTTTTTTTACTATCATT
* ** *
19105169 TTAGAACCTTTTTACACAAT-ATT
1 TTAG-A-TTTTTTTTACTATCATT
19105192 CTTAGATTTTTTTTACTATCATT
1 -TTAGATTTTTTTTACTATCATT
19105215 TTAGA
1 TTAGA
19105220 AACTTTTTAC
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
22 18 0.46
23 8 0.21
24 13 0.33
ACGTcount: A:0.27, C:0.12, G:0.05, T:0.55
Consensus pattern (22 bp):
TTAGATTTTTTTTACTATCATT
Found at i:19105180 original size:24 final size:23
Alignment explanation
Indices: 19105153--19105227 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 23
19105143 ATTCTTAGAT
19105153 TTTTTTTACTATCATTTTAGAACC
1 TTTTTTTACTATCATTTTAGAA-C
** * *
19105177 TTTTTACACAAT-ATTCTTAG-AT
1 TTTTTTTACTATCATT-TTAGAAC
19105199 TTTTTTTACTATCATTTTAGAAAC
1 TTTTTTTACTATCATTTTAG-AAC
19105223 TTTTT
1 TTTTT
19105228 ACATTTTAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
22 13 0.33
23 7 0.18
24 19 0.49
ACGTcount: A:0.27, C:0.13, G:0.04, T:0.56
Consensus pattern (23 bp):
TTTTTTTACTATCATTTTAGAAC
Found at i:19105198 original size:46 final size:46
Alignment explanation
Indices: 19105130--19105230 Score: 175
Period size: 46 Copynumber: 2.2 Consensus size: 46
19105120 CTATTCGCAT
* *
19105130 TTTTTACAATAATATTCTTAGATTTTTTTTACTATCATTTTAGAACC
1 TTTTTAC-ACAATATTCTTAGATTTTTTTTACTATCATTTTAGAAAC
19105177 TTTTTACACAATATTCTTAGATTTTTTTTACTATCATTTTAGAAAC
1 TTTTTACACAATATTCTTAGATTTTTTTTACTATCATTTTAGAAAC
19105223 TTTTTACA
1 TTTTTACA
19105231 TTTTAATTTT
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
46 45 0.87
47 7 0.13
ACGTcount: A:0.30, C:0.13, G:0.04, T:0.53
Consensus pattern (46 bp):
TTTTTACACAATATTCTTAGATTTTTTTTACTATCATTTTAGAAAC
Found at i:19105226 original size:22 final size:22
Alignment explanation
Indices: 19105155--19105229 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
19105145 TCTTAGATTT
*
19105155 TTTTTACTATCATTTTAGAACC
1 TTTTTACTATCATTTTAGAAAC
* ***
19105177 TTTTTACACAAT-ATTCTTAGATTT
1 TTTTT--ACTATCATT-TTAGAAAC
19105201 TTTTTACTATCATTTTAGAAAC
1 TTTTTACTATCATTTTAGAAAC
19105223 TTTTTAC
1 TTTTTAC
19105230 ATTTTAATTT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
22 21 0.51
23 6 0.15
24 14 0.34
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (22 bp):
TTTTTACTATCATTTTAGAAAC
Found at i:19111229 original size:46 final size:47
Alignment explanation
Indices: 19111085--19111346 Score: 265
Period size: 46 Copynumber: 5.6 Consensus size: 47
19111075 GCGTGTGTGG
* *
19111085 TAGTGTAAGACATGTCT-GGACATGCATCGGCCAC-ATTATG-AGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTAGAGC
* * *
19111130 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACG-AGAGC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGC
19111178 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGC
* ** * *
19111224 CAGTGTAAGACATGTCAAGGACATGCATC-GACTACGAGATGT---GT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGC
* *
19111268 TAGTGTAAGACATGTCTGGGACATGCATCGGCAC-GGATATGTGAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGC-CTCGAGATGT-AGAGC
*
19111316 CAGTGTAAGACCATGTCTGGGACATGGCATC
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATC
19111347 AGCATTATAC
Statistics
Matches: 182, Mismatches: 21, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
44 33 0.18
45 14 0.08
46 59 0.32
47 21 0.12
48 35 0.19
49 15 0.08
50 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGC
Found at i:19111292 original size:90 final size:94
Alignment explanation
Indices: 19111080--19111346 Score: 286
Period size: 90 Copynumber: 2.9 Consensus size: 94
19111070 GTGATGCGTG
* * * *
19111080 TGTGGTAGTGTAAGACATGTCT-GGACATGCATCGGC-CAC-A-TTATGAGAGCTAGTGTAAGAC
1 TGTGTTAGTGTAAGACATGTCTGGGACATGCATCGGCAC-CGAGATGTGAGAGCCAGTGTAAGAC
** *
19111141 CATGTCTGGGACATGGCATCGGCATTGA-GACGA
65 CATGTCAAGGACATGGCATC-G-ACT-ACGA-GA
* *
19111174 -GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-CTCGAGATGT-A-AGCCAGTGTAAGA-
1 TGTGTTAGTGTAAGACATGTCTGGGACATGCATCGGCAC-CGAGATGTGAGAGCCAGTGTAAGAC
19111234 CATGTCAAGGACAT-GCATCGACTACGAGA
65 CATGTCAAGGACATGGCATCGACTACGAGA
* *
19111263 TGTGTTAGTGTAAGACATGTCTGGGACATGCATCGGCACGGATATGTGAGAGCCAGTGTAAGACC
1 TGTGTTAGTGTAAGACATGTCTGGGACATGCATCGGCACCGAGATGTGAGAGCCAGTGTAAGACC
**
19111328 ATGTCTGGGACATGGCATC
66 ATGTCAAGGACATGGCATC
19111347 AGCATTATAC
Statistics
Matches: 148, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
89 3 0.02
90 44 0.30
91 3 0.02
92 18 0.12
93 43 0.29
94 33 0.22
95 2 0.01
96 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (94 bp):
TGTGTTAGTGTAAGACATGTCTGGGACATGCATCGGCACCGAGATGTGAGAGCCAGTGTAAGACC
ATGTCAAGGACATGGCATCGACTACGAGA
Found at i:19114428 original size:10 final size:10
Alignment explanation
Indices: 19114409--19114438 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
19114399 TAGTTAAATA
19114409 ATTTTT-GTG
1 ATTTTTAGTG
19114418 ATTTTTAGTG
1 ATTTTTAGTG
19114428 ATTTTTAGTG
1 ATTTTTAGTG
19114438 A
1 A
19114439 AAATGCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.30
10 14 0.70
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (10 bp):
ATTTTTAGTG
Found at i:19114507 original size:19 final size:20
Alignment explanation
Indices: 19114469--19114508 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
19114459 TTTGTGAAAA
*
19114469 TGTGAAAATGTGGTTAAATG
1 TGTGAAAATGTGGATAAATG
*
19114489 TGTGAAAA-GTTGATAAATG
1 TGTGAAAATGTGGATAAATG
19114508 T
1 T
19114509 AGGCTACTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.00, G:0.28, T:0.35
Consensus pattern (20 bp):
TGTGAAAATGTGGATAAATG
Found at i:19114560 original size:26 final size:26
Alignment explanation
Indices: 19114510--19114560 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
19114500 GATAAATGTA
* *
19114510 GGCTACTAGGGGCATTATAGTAATTC
1 GGCTACTAGGGGCATTAAAGAAATTC
* *
19114536 GGCTATTATGGGCATTAAAGAAATT
1 GGCTACTAGGGGCATTAAAGAAATT
19114561 TCATGAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (26 bp):
GGCTACTAGGGGCATTAAAGAAATTC
Found at i:19117778 original size:14 final size:14
Alignment explanation
Indices: 19117743--19117771 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
19117733 GTGTAAATAG
19117743 TGTGGGAGGAAACA
1 TGTGGGAGGAAACA
19117757 TGTGGGAGGAAACA
1 TGTGGGAGGAAACA
19117771 T
1 T
19117772 TTTGGAGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.41, T:0.17
Consensus pattern (14 bp):
TGTGGGAGGAAACA
Found at i:19124022 original size:21 final size:20
Alignment explanation
Indices: 19123997--19124045 Score: 82
Period size: 21 Copynumber: 2.5 Consensus size: 20
19123987 CAATATCATG
19123997 TTTCTATCTAGTCATTACTA
1 TTTCTATCTAGTCATTACTA
19124017 TATTCTATCTAGTCATTACTA
1 T-TTCTATCTAGTCATTACTA
19124038 TTTC-ATCT
1 TTTCTATCT
19124046 TAAGGTTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.14
20 4 0.14
21 20 0.71
ACGTcount: A:0.24, C:0.20, G:0.04, T:0.51
Consensus pattern (20 bp):
TTTCTATCTAGTCATTACTA
Found at i:19137522 original size:18 final size:17
Alignment explanation
Indices: 19137499--19137532 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
19137489 GCTGGGTCGA
19137499 AATAGGCCGTGTGGGCTC
1 AATAGG-CGTGTGGGCTC
*
19137517 AATAGGCTTGTGGGCT
1 AATAGGCGTGTGGGCT
19137533 TCACACGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.18, C:0.18, G:0.38, T:0.26
Consensus pattern (17 bp):
AATAGGCGTGTGGGCTC
Found at i:19137809 original size:27 final size:27
Alignment explanation
Indices: 19137779--19137832 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
19137769 AAGAATAAAA
*
19137779 TACCCCTATAGGGTAAAATGACT-ATTT
1 TACCCCTAGAGGGTAAAA-GACTGATTT
*
19137806 TACCCCTCGAGGGTAAAAGACTGATTT
1 TACCCCTAGAGGGTAAAAGACTGATTT
19137833 GTGCTATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAAAGACTGATTT
Found at i:19139963 original size:15 final size:15
Alignment explanation
Indices: 19139940--19139970 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
19139930 TCAAAAATTC
19139940 CAATACAAAACATAT
1 CAATACAAAACATAT
*
19139955 CAATCCAAAACATAT
1 CAATACAAAACATAT
19139970 C
1 C
19139971 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:19143062 original size:56 final size:56
Alignment explanation
Indices: 19142976--19143109 Score: 187
Period size: 56 Copynumber: 2.4 Consensus size: 56
19142966 CATGGCATCA
**
19142976 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTAGCATTGATATGTGATTCCG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTAGCATCAATATGTGATTCCG
** * * *
19143032 ATATATGTGTATGAGTAAGACCACGTTTAATATGTTGGCATCAATATGTGATTCTG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTAGCATCAATATGTGATTCCG
* *
19143088 ATTTATATGTGCGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
19143110 CTGTTTGGGA
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 67 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTAGCATCAATATGTGATTCCG
Found at i:19147951 original size:25 final size:25
Alignment explanation
Indices: 19147864--19147955 Score: 87
Period size: 25 Copynumber: 3.7 Consensus size: 25
19147854 TTATGTACAT
* * *
19147864 GTATGCTCATACGAGCTATGAATCG
1 GTATGCTTACACGAGCTATAAATCG
** * * *
19147889 GTATGCTTACTTGAGCTGTAGATCA
1 GTATGCTTACACGAGCTATAAATCG
19147914 GTATGCTCT-CACGAGCTATAAATCG
1 GTATGCT-TACACGAGCTATAAATCG
*
19147939 GTACGCTTACACGAGCT
1 GTATGCTTACACGAGCT
19147956 GTGGGTCAAA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
24 1 0.02
25 49 0.96
26 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (25 bp):
GTATGCTTACACGAGCTATAAATCG
Found at i:19147998 original size:41 final size:41
Alignment explanation
Indices: 19147949--19148041 Score: 132
Period size: 41 Copynumber: 2.3 Consensus size: 41
19147939 GTACGCTTAC
*
19147949 ACGAGCTGTGGGTCAAAACATAGCTATACGATGCTACTCAA
1 ACGAGCTGTGGGTCAAAACATAGCTACACGATGCTACTCAA
* * * * *
19147990 ATGAGCTGTGGGTCAGAACGTAGCTACACGATGCTGCTCAC
1 ACGAGCTGTGGGTCAAAACATAGCTACACGATGCTACTCAA
19148031 ACGAGCTGTGG
1 ACGAGCTGTGG
19148042 AGTATCCGCA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.22
Consensus pattern (41 bp):
ACGAGCTGTGGGTCAAAACATAGCTACACGATGCTACTCAA
Found at i:19156677 original size:28 final size:28
Alignment explanation
Indices: 19156635--19156710 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
19156625 TACTGAATGC
* *
19156635 CTCACACACTAAGTGTCATAGTCGATAT
1 CTCACACACTAAGTGCCATACTCGATAT
* *
19156663 CTCTCACACTAAGTGCCACACTCGATAT
1 CTCACACACTAAGTGCCATACTCGATAT
*
19156691 CTGACACACTAAGTGCCATA
1 CTCACACACTAAGTGCCATA
19156711 TAACCGAAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (28 bp):
CTCACACACTAAGTGCCATACTCGATAT
Found at i:19156761 original size:40 final size:38
Alignment explanation
Indices: 19156695--19156788 Score: 134
Period size: 40 Copynumber: 2.4 Consensus size: 38
19156685 CGATATCTGA
*
19156695 CACACTAAGTGCCATATAACCGAAGCTATCTCAAATTG
1 CACAATAAGTGCCATATAACCGAAGCTATCTCAAATTG
* *
19156733 CTCAATAAGTGCCATATATAGCCGAAGCTATGTCAAATTG
1 CACAATAAGTGCCATATA-A-CCGAAGCTATCTCAAATTG
*
19156773 CACACTAAGTGCCATA
1 CACAATAAGTGCCATA
19156789 AATACCTGAT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
38 16 0.33
39 1 0.02
40 32 0.65
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.24
Consensus pattern (38 bp):
CACAATAAGTGCCATATAACCGAAGCTATCTCAAATTG
Found at i:19157546 original size:39 final size:39
Alignment explanation
Indices: 19157488--19157567 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
19157478 GCCAAATGAA
19157488 AACCTAAAACTTTGGCTTCTCTTCTTGCATAATTTGGTT
1 AACCTAAAACTTTGGCTTCTCTTCTTGCATAATTTGGTT
*
19157527 AACCTAAAACTTTGTCTTCTCTTCTTGCATAATTTGGTT
1 AACCTAAAACTTTGGCTTCTCTTCTTGCATAATTTGGTT
19157566 AA
1 AA
19157568 AATGATGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.44
Consensus pattern (39 bp):
AACCTAAAACTTTGGCTTCTCTTCTTGCATAATTTGGTT
Found at i:19166657 original size:48 final size:47
Alignment explanation
Indices: 19166581--19166809 Score: 148
Period size: 48 Copynumber: 4.8 Consensus size: 47
19166571 GAGGGTAAAT
* *
19166581 TGCCGATGCCAT-ATCCAAGACATAGTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCCATGTTCC-AGACATGGTCTTACACTAGCTCTC-TCTCAA
* * * *
19166629 TGCCGATGCCATGTTCCATATATGGTCTTACA-TTGGT-TCTCAT-AA
1 TGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCTC-TCAA
* * * * *
19166674 TGTGGCCGACGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAA
1 --T-GCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTC-TCTCAA
* * * **
19166725 CGCCGATGCCATGTTCCAAACATGGTTTTATTCT-G-TCTCTCAT-AA
1 TGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCTC-TCAA
* *
19166770 TGTGGCTGATGCCATGTCCCAGACATGGTCTTACACTAGC
1 --T-GCCGATGCCATGTTCCAGACATGGTCTTACACTAGC
19166810 ACACACATCA
Statistics
Matches: 134, Mismatches: 32, Indels: 28
0.69 0.16 0.14
Matches are distributed among these distances:
45 7 0.05
46 6 0.04
47 5 0.04
48 105 0.78
49 6 0.04
50 2 0.01
51 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (47 bp):
TGCCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCTCTCAA
Found at i:19166750 original size:96 final size:96
Alignment explanation
Indices: 19166582--19166819 Score: 309
Period size: 96 Copynumber: 2.5 Consensus size: 96
19166572 AGGGTAAATT
* * * * * * * *
19166582 GCCGATGCCATATCCAAGACATAGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTTCCA
* *
19166647 TATATGGTCTTACATT-GGT-TCTCATAATGTG
66 AACATGGT-TT-CATTCGGTCTCTCATAATGTG
*
19166678 GCCGACGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTTCCA
* *
19166743 AACATGGTTTTATTCTGTCTCTCATAATGTG
66 AACATGGTTTCATTCGGTCTCTCATAATGTG
* *
19166774 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCACACACATCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCA
19166820 TCCAAATGTC
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
94 3 0.02
95 4 0.03
96 117 0.94
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGATGCCATGTTCCA
AACATGGTTTCATTCGGTCTCTCATAATGTG
Found at i:19171791 original size:50 final size:50
Alignment explanation
Indices: 19171716--19171891 Score: 194
Period size: 50 Copynumber: 3.5 Consensus size: 50
19171706 CTGATACGCA
* * *
19171716 TAGTAGCCTGCACTTAGAACTACACATGCAACTTAACAGTATGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTATGGTACACG
* * ** * *
19171766 TAGTAGCCTACACTTAGTACTACACACGTGA-TCGA-AGTCATTGAGTACGCA
1 TAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGT-A-TG-GTACACG
* *
19171817 TAGTAGCCTACACTTAGTACTACACATTCGACTTAACAATATGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTATGGTACACG
* *
19171867 TAGTAGCCTGCACTTTGTACTACAC
1 TAGTAGCCTACACTTAGTACTACAC
19171892 TCGCGTATTC
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
48 3 0.03
49 3 0.03
50 56 0.55
51 35 0.34
52 3 0.03
53 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTACACTTAGTACTACACATGCGACTTAACAGTATGGTACACG
Found at i:19171872 original size:101 final size:101
Alignment explanation
Indices: 19171710--19171891 Score: 301
Period size: 101 Copynumber: 1.8 Consensus size: 101
19171700 AGCTATCTGA
* *
19171710 TACGCATAGTAGCCTGCACTTAGAACTACACATGCAACTTAACAGTATGGTACACGTAGTAGCCT
1 TACGCATAGTAGCCTACACTTAGAACTACACATGCAACTTAACAATATGGTACACGTAGTAGCCT
19171775 ACACTTAGTACTACACACGTGATCGAAGTCATTGAG
66 ACACTTAGTACTACACACGTGATCGAAGTCATTGAG
* * *
19171811 TACGCATAGTAGCCTACACTTAGTACTACACATTCGACTTAACAATATGGTACACGTAGTAGCCT
1 TACGCATAGTAGCCTACACTTAGAACTACACATGCAACTTAACAATATGGTACACGTAGTAGCCT
* *
19171876 GCACTTTGTACTACAC
66 ACACTTAGTACTACAC
19171892 TCGCGTATTC
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 74 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (101 bp):
TACGCATAGTAGCCTACACTTAGAACTACACATGCAACTTAACAATATGGTACACGTAGTAGCCT
ACACTTAGTACTACACACGTGATCGAAGTCATTGAG
Found at i:19178379 original size:48 final size:48
Alignment explanation
Indices: 19178327--19178495 Score: 187
Period size: 48 Copynumber: 3.5 Consensus size: 48
19178317 ATGTCGATTT
* *
19178327 CATGTTCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGACGC
1 CATGTTCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGC
* * * * * * ** *
19178375 CATGTGCTAGACATGGTCTTACACTAGCACACAT-ATCAACGCTGATGC
1 CATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-ATGGCCGATGC
* *
19178423 CATGTTCCAAATATGGTCTTACACTGGCTCTCATAATATGGTCGATGC
1 CATGTTCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGC
* *
19178471 CATGTCCCAAACATGATCTTACACT
1 CATGTTCCAAACATGGTCTTACACT
19178496 AGCACACACA
Statistics
Matches: 94, Mismatches: 25, Indels: 4
0.76 0.20 0.03
Matches are distributed among these distances:
47 2 0.02
48 90 0.96
49 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (48 bp):
CATGTTCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGC
Found at i:19178439 original size:96 final size:96
Alignment explanation
Indices: 19178279--19178508 Score: 300
Period size: 96 Copynumber: 2.4 Consensus size: 96
19178269 TTGCCGATGG
* ** * * **
19178279 CATGTCCTAGACATGGTCTTACACTAGCTCTTATGTCAATGTCGATTTCATGTTCCAAACATGGT
1 CATGTCCTAGACATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTTCCAAACATGGT
*
19178344 CTTACACTGGCTCTCATAATGTGGCCGACGC
66 CTTACACTGGCTCTCATAATATGGCCGACGC
* *
19178375 CATGTGCTAGACATGGTCTTACACTAGCACACATATCAACG-CTGATGCCATGTTCCAAATATGG
1 CATGTCCTAGACATGGTCTTACACTAGCACACATATCAACGTC-GATGCCATGTTCCAAACATGG
* *
19178439 TCTTACACTGGCTCTCATAATATGGTCGATGC
65 TCTTACACTGGCTCTCATAATATGGCCGACGC
* * * *
19178471 CATGTCCCAAACATGATCTTACACTAGCACACACATCA
1 CATGTCCTAGACATGGTCTTACACTAGCACACATATCA
19178509 CCCAAATGTC
Statistics
Matches: 116, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
95 1 0.01
96 115 0.99
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (96 bp):
CATGTCCTAGACATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTTCCAAACATGGT
CTTACACTGGCTCTCATAATATGGCCGACGC
Found at i:19180341 original size:17 final size:16
Alignment explanation
Indices: 19180315--19180350 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
19180305 CTTCTATAAT
*
19180315 AAACAGCTAATCCTAG
1 AAACAGCTAATCCCAG
19180331 AAACTAGCTAATCCCAG
1 AAAC-AGCTAATCCCAG
19180348 AAA
1 AAA
19180351 ACTTCTAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.47, C:0.25, G:0.11, T:0.17
Consensus pattern (16 bp):
AAACAGCTAATCCCAG
Found at i:19180863 original size:32 final size:32
Alignment explanation
Indices: 19180819--19180881 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
19180809 AACTGATCAA
* * *
19180819 ACAGATCGTCAATTCACGACAGTGGATACTTG
1 ACAGATCATCAATTCACAAAAGTGGATACTTG
19180851 ACAGATCATCAATTCACAAAAGTGGATACTT
1 ACAGATCATCAATTCACAAAAGTGGATACTT
19180882 ATTCTTGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (32 bp):
ACAGATCATCAATTCACAAAAGTGGATACTTG
Found at i:19192864 original size:48 final size:48
Alignment explanation
Indices: 19192812--19192980 Score: 187
Period size: 48 Copynumber: 3.5 Consensus size: 48
19192802 ATGTCGATTT
* *
19192812 CATGTTCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGACGC
1 CATGTTCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGC
* * * * * * ** *
19192860 CATGTGCTAGACATGGTCTTACACTAGCACACAT-ATCAACGCTGATGC
1 CATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-ATGGCCGATGC
* *
19192908 CATGTTCCAAATATGGTCTTACACTGGCTCTCATAATATGGTCGATGC
1 CATGTTCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGC
* *
19192956 CATGTCCCAAACATGATCTTACACT
1 CATGTTCCAAACATGGTCTTACACT
19192981 AGCACACACA
Statistics
Matches: 94, Mismatches: 25, Indels: 4
0.76 0.20 0.03
Matches are distributed among these distances:
47 2 0.02
48 90 0.96
49 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (48 bp):
CATGTTCCAAACATGGTCTTACACTGGCTCTCATAATATGGCCGATGC
Found at i:19192924 original size:96 final size:96
Alignment explanation
Indices: 19192764--19192993 Score: 300
Period size: 96 Copynumber: 2.4 Consensus size: 96
19192754 TTGCCGATGG
* ** * * **
19192764 CATGTCCTAGACATGGTCTTACACTAGCTCTTATGTCAATGTCGATTTCATGTTCCAAACATGGT
1 CATGTCCTAGACATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTTCCAAACATGGT
*
19192829 CTTACACTGGCTCTCATAATGTGGCCGACGC
66 CTTACACTGGCTCTCATAATATGGCCGACGC
* *
19192860 CATGTGCTAGACATGGTCTTACACTAGCACACATATCAACG-CTGATGCCATGTTCCAAATATGG
1 CATGTCCTAGACATGGTCTTACACTAGCACACATATCAACGTC-GATGCCATGTTCCAAACATGG
* *
19192924 TCTTACACTGGCTCTCATAATATGGTCGATGC
65 TCTTACACTGGCTCTCATAATATGGCCGACGC
* * * *
19192956 CATGTCCCAAACATGATCTTACACTAGCACACACATCA
1 CATGTCCTAGACATGGTCTTACACTAGCACACATATCA
19192994 CCCAAATGTC
Statistics
Matches: 116, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
95 1 0.01
96 115 0.99
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (96 bp):
CATGTCCTAGACATGGTCTTACACTAGCACACATATCAACGTCGATGCCATGTTCCAAACATGGT
CTTACACTGGCTCTCATAATATGGCCGACGC
Found at i:19194826 original size:17 final size:16
Alignment explanation
Indices: 19194800--19194835 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
19194790 CTTCTATAAT
*
19194800 AAACAGCTAATCCTAG
1 AAACAGCTAATCCCAG
19194816 AAACTAGCTAATCCCAG
1 AAAC-AGCTAATCCCAG
19194833 AAA
1 AAA
19194836 ACTTCTAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.47, C:0.25, G:0.11, T:0.17
Consensus pattern (16 bp):
AAACAGCTAATCCCAG
Found at i:19195348 original size:32 final size:32
Alignment explanation
Indices: 19195304--19195366 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
19195294 AACTGATCAA
* * *
19195304 ACAGATCGTCAATTCACGACAGTGGATACTTG
1 ACAGATCATCAATTCACAAAAGTGGATACTTG
19195336 ACAGATCATCAATTCACAAAAGTGGATACTT
1 ACAGATCATCAATTCACAAAAGTGGATACTT
19195367 ATTCTTGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (32 bp):
ACAGATCATCAATTCACAAAAGTGGATACTTG
Found at i:19202687 original size:27 final size:27
Alignment explanation
Indices: 19202657--19202834 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
19202647 ATATTGAGTC
* * * *
19202657 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
19202684 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
19202711 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* ** * *
19202739 CGCATACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
19202766 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
19202793 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
19202820 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
19202835 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:19202803 original size:82 final size:81
Alignment explanation
Indices: 19202678--19202833 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
19202668 TGCTATATAA
* *
19202678 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
*
19202743 TACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
19202760 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
19202824 CACTTAGTGC
65 CACTTAGTGC
19202834 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:19206583 original size:254 final size:254
Alignment explanation
Indices: 19206134--19206640 Score: 978
Period size: 254 Copynumber: 2.0 Consensus size: 254
19206124 ATGTCAATTT
19206134 TGAGATGTTGCATTCTTGAGTTTGAAGGCACGTGGGAACAACATCTACCTTTGATTGAATTCACT
1 TGAGATGTTGCATTCTTGAGTTTGAAGGCACGTGGGAACAACATCTACCTTTGATTGAATTCACT
19206199 TATAATAATAGTTTTCATTCGAGCATTAAAATGGCACCGTATGAAGCCTTATATGGTAGAAAGTG
66 TATAATAATAGTTTTCATTCGAGCATTAAAATGGCACCGTATGAAGCCTTATATGGTAGAAAGTG
19206264 TAGAACTCTGTTATACTGGTCTGAGCTCAGTGAGAATAAGATTTACAGGTTGATCTGATAAAAGA
131 TAGAACTCTGTTATACTGGTCTGAGCTCAGTGAGAATAAGATTTACAGGTTGATCTGATAAAAGA
*
19206329 AACAGGACGAAAAGTGAAAATAATCCGAGATAGTCTGAAAGCTGCCTCTGATCGTCAGG
196 AACAGAACGAAAAGTGAAAATAATCCGAGATAGTCTGAAAGCTGCCTCTGATCGTCAGG
*
19206388 TGAGATGTTGCATTCTTGAGTTTGAAGGCACGTGGGAACAACATCTACCTTTGATTGAATTCGCT
1 TGAGATGTTGCATTCTTGAGTTTGAAGGCACGTGGGAACAACATCTACCTTTGATTGAATTCACT
*
19206453 TATAATAATAGTTTTCATTCGAGCATTAAAATGGCACCGTATGAAGCCTTATATGGTCGAAAGTG
66 TATAATAATAGTTTTCATTCGAGCATTAAAATGGCACCGTATGAAGCCTTATATGGTAGAAAGTG
*
19206518 TAGAACTCTGTTATACTGGTCTGAGCTCAGTGAGAATAAGATTTACGGGTTGATCTGATAAAAGA
131 TAGAACTCTGTTATACTGGTCTGAGCTCAGTGAGAATAAGATTTACAGGTTGATCTGATAAAAGA
19206583 AACAGAACGAAAAGTGAAAATAATCCGAGATAGTCTGAAAGCTGCCTCTGATCGTCAG
196 AACAGAACGAAAAGTGAAAATAATCCGAGATAGTCTGAAAGCTGCCTCTGATCGTCAG
19206641 AAATCTTATG
Statistics
Matches: 249, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
254 249 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (254 bp):
TGAGATGTTGCATTCTTGAGTTTGAAGGCACGTGGGAACAACATCTACCTTTGATTGAATTCACT
TATAATAATAGTTTTCATTCGAGCATTAAAATGGCACCGTATGAAGCCTTATATGGTAGAAAGTG
TAGAACTCTGTTATACTGGTCTGAGCTCAGTGAGAATAAGATTTACAGGTTGATCTGATAAAAGA
AACAGAACGAAAAGTGAAAATAATCCGAGATAGTCTGAAAGCTGCCTCTGATCGTCAGG
Found at i:19206661 original size:48 final size:48
Alignment explanation
Indices: 19206605--19206700 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
19206595 AGTGAAAATA
19206605 ATCCGAGATAGTCTGAAAGCTGCCTCTGATCGTCAGAAATCTTATGCG
1 ATCCGAGATAGTCTGAAAGCTGCCTCTGATCGTCAGAAATCTTATGCG
19206653 ATCCGAGATAGTCTGAAAGCTGCCTCTGATCGTCAGAAATCTTATGCG
1 ATCCGAGATAGTCTGAAAGCTGCCTCTGATCGTCAGAAATCTTATGCG
19206701 GATTTAAAAC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (48 bp):
ATCCGAGATAGTCTGAAAGCTGCCTCTGATCGTCAGAAATCTTATGCG
Found at i:19207497 original size:80 final size:80
Alignment explanation
Indices: 19207363--19207522 Score: 311
Period size: 80 Copynumber: 2.0 Consensus size: 80
19207353 TTAAATAGCA
19207363 AAAAGTGTAAAACTTGAGTACTAGCTGAAAAGCACCTATTTGGCTTGGTCTTTAAAATAAAGGTC
1 AAAAGTGTAAAACTTGAGTACTAGCTGAAAAGCACCTATTTGGCTTGGTCTTTAAAATAAAGGTC
19207428 CTTGCATGTCAATTG
66 CTTGCATGTCAATTG
*
19207443 AAAAGTGTAAAACTTGAGTACTAGCTGAAAAGCACCTATTTGGCTTGGTTTTTAAAATAAAGGTC
1 AAAAGTGTAAAACTTGAGTACTAGCTGAAAAGCACCTATTTGGCTTGGTCTTTAAAATAAAGGTC
19207508 CTTGCATGTCAATTG
66 CTTGCATGTCAATTG
19207523 TACCATTTGT
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (80 bp):
AAAAGTGTAAAACTTGAGTACTAGCTGAAAAGCACCTATTTGGCTTGGTCTTTAAAATAAAGGTC
CTTGCATGTCAATTG
Found at i:19207700 original size:105 final size:105
Alignment explanation
Indices: 19207518--19207730 Score: 417
Period size: 105 Copynumber: 2.0 Consensus size: 105
19207508 CTTGCATGTC
*
19207518 AATTGTACCATTTGTTTAAATGGTGGACAATTATGGGCATTAGTGGATGGAAATTTATGTTTTAA
1 AATTGTACCATTTGTTTAAATGGTGGACAATTATGGGCATTAGTGGATGGAAATTCATGTTTTAA
19207583 TAACAAGGGCAAAATGGAAATTGATTAACATGTTAATAGT
66 TAACAAGGGCAAAATGGAAATTGATTAACATGTTAATAGT
19207623 AATTGTACCATTTGTTTAAATGGTGGACAATTATGGGCATTAGTGGATGGAAATTCATGTTTTAA
1 AATTGTACCATTTGTTTAAATGGTGGACAATTATGGGCATTAGTGGATGGAAATTCATGTTTTAA
19207688 TAACAAGGGCAAAATGGAAATTGATTAACATGTTAATAGT
66 TAACAAGGGCAAAATGGAAATTGATTAACATGTTAATAGT
19207728 AAT
1 AAT
19207731 AAAAAACAAA
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 107 1.00
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.35
Consensus pattern (105 bp):
AATTGTACCATTTGTTTAAATGGTGGACAATTATGGGCATTAGTGGATGGAAATTCATGTTTTAA
TAACAAGGGCAAAATGGAAATTGATTAACATGTTAATAGT
Found at i:19207836 original size:87 final size:87
Alignment explanation
Indices: 19207732--19207904 Score: 328
Period size: 87 Copynumber: 2.0 Consensus size: 87
19207722 AATAGTAATA
19207732 AAAAACAAAACAAAATGTGGCCATTTTGTTCATCTTTCTCTACCGAAATTAGAAAAGAAGAAAGG
1 AAAAACAAAACAAAATGTGGCCATTTTGTTCATCTTTCTCTACCGAAATTAGAAAAGAAGAAAGG
19207797 GTTTTAAGCTTCATTTCATTCC
66 GTTTTAAGCTTCATTTCATTCC
* *
19207819 AAAAACCAAACAAAATGTGGCCATTTTGTTCATTTTTCTCTACCGAAATTAGAAAAGAAGAAAGG
1 AAAAACAAAACAAAATGTGGCCATTTTGTTCATCTTTCTCTACCGAAATTAGAAAAGAAGAAAGG
19207884 GTTTTAAGCTTCATTTCATTC
66 GTTTTAAGCTTCATTTCATTC
19207905 GGCCATGAAT
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 84 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.32
Consensus pattern (87 bp):
AAAAACAAAACAAAATGTGGCCATTTTGTTCATCTTTCTCTACCGAAATTAGAAAAGAAGAAAGG
GTTTTAAGCTTCATTTCATTCC
Found at i:19208303 original size:195 final size:195
Alignment explanation
Indices: 19207971--19208359 Score: 733
Period size: 195 Copynumber: 2.0 Consensus size: 195
19207961 CATTTCTGTG
* *
19207971 ATCGTTGCTTCGTGTTCTTCAAAGCCCATGTTTGAATTTCTATTTCTGTTAAAGATTTCATGAAA
1 ATCGTTGCTTCGTGTTCTTCAAAGCCCATGTCTGAATTTCTATTTCTGCTAAAGATTTCATGAAA
*
19208036 TGCCATTGTTGATATGATGAGTTTTGTGATGTTTTTGGATGAATTATGAAGGCTTGTTAGATGAG
66 TGCCATTGTTGATAGGATGAGTTTTGTGATGTTTTTGGATGAATTATGAAGGCTTGTTAGATGAG
*
19208101 TTATATGTTTTGTTCTTGAATTTTTGATTAAATGAGCTATTTGGGCTAATTTGTGAAAATGAGGA
131 TTATATGTTTTCTTCTTGAATTTTTGATTAAATGAGCTATTTGGGCTAATTTGTGAAAATGAGGA
*
19208166 ATCGTTGCTTCGTGTTCTTCAAAGCCCATGTCTGAATTTCTGTTTCTGCTAAAGATTTCATGAAA
1 ATCGTTGCTTCGTGTTCTTCAAAGCCCATGTCTGAATTTCTATTTCTGCTAAAGATTTCATGAAA
19208231 TGCCATTGTTGATAGGATGAGTTTTGTGATGTTTTTGGATGAATTATGAAGGCTTGTTAGATGAG
66 TGCCATTGTTGATAGGATGAGTTTTGTGATGTTTTTGGATGAATTATGAAGGCTTGTTAGATGAG
19208296 TTATATGTTTTCTTCTTGAATTTTTGATTAAATGAGCTATTTGGGCTAATTTGTGAAAATGAGG
131 TTATATGTTTTCTTCTTGAATTTTTGATTAAATGAGCTATTTGGGCTAATTTGTGAAAATGAGG
19208360 TTTTGAATGA
Statistics
Matches: 189, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
195 189 1.00
ACGTcount: A:0.25, C:0.10, G:0.22, T:0.43
Consensus pattern (195 bp):
ATCGTTGCTTCGTGTTCTTCAAAGCCCATGTCTGAATTTCTATTTCTGCTAAAGATTTCATGAAA
TGCCATTGTTGATAGGATGAGTTTTGTGATGTTTTTGGATGAATTATGAAGGCTTGTTAGATGAG
TTATATGTTTTCTTCTTGAATTTTTGATTAAATGAGCTATTTGGGCTAATTTGTGAAAATGAGGA
Found at i:19209435 original size:27 final size:28
Alignment explanation
Indices: 19209405--19209461 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
19209395 ATTTTTGATG
19209405 AAATGAGCTATTTG-GG-CTAATTTGTGA
1 AAATGAGCT-TTTGAGGACTAATTTGTGA
*
19209432 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATGAGCTTTTG-AGGACTAATTTGTGA
19209461 A
1 A
19209462 TTTAACATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 2 0.08
29 12 0.46
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.35
Consensus pattern (28 bp):
AAATGAGCTTTTGAGGACTAATTTGTGA
Found at i:19210504 original size:12 final size:13
Alignment explanation
Indices: 19210487--19210518 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
19210477 GCAAATGTTA
19210487 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
19210499 AGTTTTGATGCAT
1 AGTTTTGATGCAT
19210512 -GTTTTGA
1 AGTTTTGA
19210519 AATGTGATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:19218253 original size:410 final size:410
Alignment explanation
Indices: 19217493--19218261 Score: 1493
Period size: 410 Copynumber: 1.9 Consensus size: 410
19217483 ACCGAGGTAA
19217493 CGAATTAAATGAAATATGATGGTGGGGCTGTGTGCTGAAACCATCAAGTATGGAGGATTAATCCG
1 CGAATTAAATGAAATATGATGGTGGGGCTGTGTGCTGAAACCATCAAGTATGGAGGATTAATCCG
*
19217558 AATTGTTCAACGAGATGGCTTTATGGTAACATTGTAATCATGGGCCTATACTCGCGATGTGTGAA
66 AATTGTTCAACGAGATGGCTTTATGGTAACATTGTAATCATGGGCCTATACTCGCAATGTGTGAA
19217623 ATGTGGTGAAAATGATTTGTGATATATATATAAGTTAAAATGAGGTTAGTACAAAGAATGTGTGA
131 ATGTGGTGAAAATGATTTGTGATATATATATAAGTTAAAATGAGGTTAGTACAAAGAATGTGTGA
19217688 AAGAGTGAAATTAGCACTAAAACTGTTTTGGACAGTAGCAGTGATGTTATTTTGAAAAATCACAA
196 AAGAGTGAAATTAGCACTAAAACTGTTTTGGACAGTAGCAGTGATGTTATTTTGAAAAATCACAA
19217753 AAAATATATGGAATTTAATTAGAGATTGAATGAAATGTGAAATTAAAGCTTAATGAGTCTATTTT
261 AAAATATATGGAATTTAATTAGAGATTGAATGAAATGTGAAATTAAAGCTTAATGAGTCTATTTT
19217818 CATATAAAAGAAACAGAGCAAGCAAAAGAATTCTTGGCTAGGTCGCATGAGTGGTACTAAGTGTT
326 CATATAAAAGAAACAGAGCAAGCAAAAGAATTCTTGGCTAGGTCGCATGAGTGGTACTAAGTGTT
19217883 CACCATTTGTACAAGAGAGT
391 CACCATTTGTACAAGAGAGT
19217903 CGAATTAAATGAAATATGATGGTGGGGCTGTGTGCTGAAACCATCAAGTATGGAGGATTAATCCG
1 CGAATTAAATGAAATATGATGGTGGGGCTGTGTGCTGAAACCATCAAGTATGGAGGATTAATCCG
* * * *
19217968 AATTGTTCAACGGGATGGCTTTGTGGTGACATTGTAGTCATGGGCCTATACTCGCAATGTGTGAA
66 AATTGTTCAACGAGATGGCTTTATGGTAACATTGTAATCATGGGCCTATACTCGCAATGTGTGAA
19218033 ATGTGGTGAAAATGATTTGTGATATATATATAAGTTAAAATGAGGTTAGTACAAAGAATGTGTGA
131 ATGTGGTGAAAATGATTTGTGATATATATATAAGTTAAAATGAGGTTAGTACAAAGAATGTGTGA
19218098 AAGAGTGAAATTAGCACTAAAACTGTTTTGGACAGTAGCAGTGATGTTATTTTGAAAAATCACAA
196 AAGAGTGAAATTAGCACTAAAACTGTTTTGGACAGTAGCAGTGATGTTATTTTGAAAAATCACAA
19218163 AAAATATATGGAATTTAATTAGAGATTGAATGAAATGTGAAATTAAAGCTTAATGAGTCTATTTT
261 AAAATATATGGAATTTAATTAGAGATTGAATGAAATGTGAAATTAAAGCTTAATGAGTCTATTTT
19218228 CATATAAAAGAAACAGAGCAAGCAAAAGAATTCT
326 CATATAAAAGAAACAGAGCAAGCAAAAGAATTCT
19218262 ATATTTTGAG
Statistics
Matches: 354, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
410 354 1.00
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (410 bp):
CGAATTAAATGAAATATGATGGTGGGGCTGTGTGCTGAAACCATCAAGTATGGAGGATTAATCCG
AATTGTTCAACGAGATGGCTTTATGGTAACATTGTAATCATGGGCCTATACTCGCAATGTGTGAA
ATGTGGTGAAAATGATTTGTGATATATATATAAGTTAAAATGAGGTTAGTACAAAGAATGTGTGA
AAGAGTGAAATTAGCACTAAAACTGTTTTGGACAGTAGCAGTGATGTTATTTTGAAAAATCACAA
AAAATATATGGAATTTAATTAGAGATTGAATGAAATGTGAAATTAAAGCTTAATGAGTCTATTTT
CATATAAAAGAAACAGAGCAAGCAAAAGAATTCTTGGCTAGGTCGCATGAGTGGTACTAAGTGTT
CACCATTTGTACAAGAGAGT
Found at i:19224499 original size:78 final size:78
Alignment explanation
Indices: 19224370--19224526 Score: 278
Period size: 78 Copynumber: 2.0 Consensus size: 78
19224360 AAGTCATTCT
**
19224370 TCATATGTATAGATTCCTTTTTGAGTCTAGTTTCATTAGAAACAAACGGCATAAGTATTGAAGCT
1 TCATATGTATAGATTAATTTTTGAGTCTAGTTTCATTAGAAACAAACGGCATAAGTATTGAAGCT
19224435 CTGTACAGGGAGA
66 CTGTACAGGGAGA
*
19224448 TCATATTTATAGATTAATTTTTGAGTCTAGTTTCATTAGAAACAAACGGCATAAGTATTGAAGCT
1 TCATATGTATAGATTAATTTTTGAGTCTAGTTTCATTAGAAACAAACGGCATAAGTATTGAAGCT
*
19224513 CTGTATAGGGAGA
66 CTGTACAGGGAGA
19224526 T
1 T
19224527 ATCTAAGTCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 75 1.00
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (78 bp):
TCATATGTATAGATTAATTTTTGAGTCTAGTTTCATTAGAAACAAACGGCATAAGTATTGAAGCT
CTGTACAGGGAGA
Found at i:19237645 original size:43 final size:42
Alignment explanation
Indices: 19237579--19237745 Score: 162
Period size: 43 Copynumber: 3.9 Consensus size: 42
19237569 AGCTCGTACA
* * * *
19237579 ATGCC-ATATCCCAGATATAGTCTTACATGTCAA-CACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGT-AATCACATA-CG
* * * *
19237621 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCGA-TTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC-ACAT-ACG
*
19237664 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCTGA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC--ACATACG
*
19237707 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
19237746 CTTGATAACT
Statistics
Matches: 105, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 9 0.09
43 90 0.86
44 5 0.05
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATACG
Found at i:19251863 original size:27 final size:27
Alignment explanation
Indices: 19251832--19252009 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
19251822 TAAATTGTAC
19251832 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
19251859 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
19251885 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
19251913 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
19251941 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
19251968 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
19251995 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
19252010 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:19251946 original size:82 final size:81
Alignment explanation
Indices: 19251833--19251988 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
19251823 AAATTGTACA
* *
19251833 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
19251897 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
19251914 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
19251979 TGCGAGTTGA
65 TGCGAATTGA
19251989 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:19252000 original size:82 final size:81
Alignment explanation
Indices: 19251829--19252009 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
19251819 GATTAAATTG
* *
19251829 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
19251894 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
19251910 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
19251974 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
19251992 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
19252010 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:19256333 original size:42 final size:42
Alignment explanation
Indices: 19256273--19256430 Score: 174
Period size: 42 Copynumber: 3.7 Consensus size: 42
19256263 TAGGGTTATG
* * **
19256273 TGTGATTTCATTTGAGACCATATCTGGGATATGAAATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
*
19256315 TGTGATTTCATGTAAGACCATGA-CTGGGACATGGCATCGATA
1 TGTGATTTCATGTAAGACCAT-ATCTGGGATATGGCATCGATA
* ** * * *
19256357 TGGGACATCATGTAAGACCATACCTGGGCTATTGGCTTCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATA-TGGCATCGATA
**
19256400 TGTGATCCCATGTAAGACCATATCTGGGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATA
19256431 GAGCATTGTC
Statistics
Matches: 96, Mismatches: 17, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
41 1 0.01
42 59 0.61
43 36 0.38
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:19259052 original size:27 final size:27
Alignment explanation
Indices: 19259003--19259117 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 27
19258993 TGGAGGAAGC
* *
19259003 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTACCACAAATATCT
* * * *
19259030 ATTCTGGTGGCTCTACGATAAATATTT
1 GTTCTGGTGGCTCTACCACAAATATCT
*
19259057 GTTCTGGTGGCTCAACCACAAATATCT
1 GTTCTGGTGGCTCTACCACAAATATCT
* **
19259084 GTATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTCTACCACAAATATCT
19259111 GTTCTGG
1 GTTCTGG
19259118 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
26 5 0.07
27 54 0.75
28 13 0.18
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.36
Consensus pattern (27 bp):
GTTCTGGTGGCTCTACCACAAATATCT
Found at i:19261367 original size:50 final size:49
Alignment explanation
Indices: 19261244--19261438 Score: 214
Period size: 49 Copynumber: 3.9 Consensus size: 49
19261234 ATCTATTGTG
* * * *
19261244 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTAT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTAT
* * * ** *
19261296 -GATCACATGTGTAGTATTAAGTGTAGGCTACTACGTGTATTAGA-TGGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-AT
19261344 GAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTAT
1 -AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTAT
* * *
19261394 TGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
19261439 TAGCTTCAGC
Statistics
Matches: 120, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
47 1 0.01
48 3 0.03
49 42 0.35
50 40 0.33
51 34 0.28
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (49 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTAT
Found at i:19263115 original size:208 final size:208
Alignment explanation
Indices: 19262754--19263169 Score: 814
Period size: 208 Copynumber: 2.0 Consensus size: 208
19262744 GTGTTACACC
19262754 AAATGTATTGGCTTGTAATGATTAAGGATTTGATATGGTATGTAGCCACATAAATTGGCTTATAT
1 AAATGTATTGGCTTGTAATGATTAAGGATTTGATATGGTATGTAGCCACATAAATTGGCTTATAT
19262819 TGGCTAATGAGTTGCAAGCATATTAATTACTCATATGCATTTGTCAATGTCATTGTGTGATGTGG
66 TGGCTAATGAGTTGCAAGCATATTAATTACTCATATGCATTTGTCAATGTCATTGTGTGATGTGG
*
19262884 TTTATAATGGTATGCTAATGATATTAGACTAGATGATACATGTGGGAAGTTGTTATGTTGAAGGT
131 TTTATAAGGGTATGCTAATGATATTAGACTAGATGATACATGTGGGAAGTTGTTATGTTGAAGGT
19262949 GATTGGGTATGTG
196 GATTGGGTATGTG
19262962 AAATGTATTGGCTTGTAATGATTAAGGATTTGATATGGTATGTAGCCACATAAATTGGCTTATAT
1 AAATGTATTGGCTTGTAATGATTAAGGATTTGATATGGTATGTAGCCACATAAATTGGCTTATAT
19263027 TGGCTAATGAGTTGCAAGCATATTAATTACTCATATGCATTTGTCAATGTCATTGTGTGATGTGG
66 TGGCTAATGAGTTGCAAGCATATTAATTACTCATATGCATTTGTCAATGTCATTGTGTGATGTGG
*
19263092 TTTATAAGGGTATGCTCATGATATTAGACTAGATGATACATGTGGGAAGTTGTTATGTTGAAGGT
131 TTTATAAGGGTATGCTAATGATATTAGACTAGATGATACATGTGGGAAGTTGTTATGTTGAAGGT
19263157 GATTGGGTATGTG
196 GATTGGGTATGTG
19263170 TGGACTTTAT
Statistics
Matches: 206, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
208 206 1.00
ACGTcount: A:0.29, C:0.08, G:0.25, T:0.38
Consensus pattern (208 bp):
AAATGTATTGGCTTGTAATGATTAAGGATTTGATATGGTATGTAGCCACATAAATTGGCTTATAT
TGGCTAATGAGTTGCAAGCATATTAATTACTCATATGCATTTGTCAATGTCATTGTGTGATGTGG
TTTATAAGGGTATGCTAATGATATTAGACTAGATGATACATGTGGGAAGTTGTTATGTTGAAGGT
GATTGGGTATGTG
Found at i:19266959 original size:28 final size:28
Alignment explanation
Indices: 19266927--19266991 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
19266917 ATTTACTAGA
*
19266927 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
19266955 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
19266983 ATACCCCTA
1 ATACCCCTA
19266992 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:19267155 original size:27 final size:27
Alignment explanation
Indices: 19267097--19267186 Score: 128
Period size: 28 Copynumber: 3.2 Consensus size: 27
19267087 AGGAAGCGTC
19267097 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
*
19267125 CTGGTGGCCCTGCCACAAATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
19267152 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
19267181 CTGGTG
1 CTGGTG
19267187 ACTCTGTCAC
Statistics
Matches: 57, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
27 23 0.40
28 27 0.47
29 7 0.12
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:19267205 original size:55 final size:56
Alignment explanation
Indices: 19267097--19267211 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
19267087 AGGAAGCGTC
* *
19267097 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACAAATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAAATATCTGTAT
* * * *
19267152 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAAATATCTGTAT
19267208 CTGG
1 CTGG
19267212 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 31 0.61
56 19 0.37
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAAATATCTGTAT
Found at i:19267672 original size:19 final size:19
Alignment explanation
Indices: 19267650--19267688 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
19267640 TTTTAATAAT
* *
19267650 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
19267669 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
19267688 T
1 T
19267689 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:19271103 original size:21 final size:21
Alignment explanation
Indices: 19271074--19271117 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
19271064 AATAAGTGTG
19271074 ATCAGTATGTTTATATGGTTAA
1 ATCAGTATGTTTA-ATGGTTAA
*
19271096 ATCA-TATGTTTAATTGTTAA
1 ATCAGTATGTTTAATGGTTAA
19271116 AT
1 AT
19271118 TAGAGATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.43
21 8 0.38
22 4 0.19
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.48
Consensus pattern (21 bp):
ATCAGTATGTTTAATGGTTAA
Found at i:19275233 original size:42 final size:42
Alignment explanation
Indices: 19275186--19275346 Score: 171
Period size: 42 Copynumber: 3.8 Consensus size: 42
19275176 TAGGGTTATG
* *
19275186 TGTGATTTCGTGTAAGACTATATCTGGGATATGGAATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGAATCGATA
* * *
19275228 TGTGATTTCATGTAAGACCATGTCTGGGACATGCAATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGAATCGATA
* ** * * *
19275270 TGCGACATCGTGTAAGACCATAGT-TGGGTTATCGGCATCGATA
1 TGTGATTTCATGTAAGACCATA-TCTGGGATAT-GGAATCGATA
** *
19275313 TGTGATCCCATGTAAGACCATATCTAGGATATGG
1 TGTGATTTCATGTAAGACCATATCTGGGATATGG
19275347 CATTGGGATC
Statistics
Matches: 95, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
42 63 0.66
43 32 0.34
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTGATTTCATGTAAGACCATATCTGGGATATGGAATCGATA
Found at i:19280061 original size:15 final size:15
Alignment explanation
Indices: 19280022--19280061 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
19280012 AGGAACCACA
19280022 AACATACCAAAACAT
1 AACATACCAAAACAT
*
19280037 AACAAACCAAAACAT
1 AACATACCAAAACAT
*
19280052 AACATGCCAA
1 AACATACCAA
19280062 CATAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.60, C:0.28, G:0.03, T:0.10
Consensus pattern (15 bp):
AACATACCAAAACAT
Found at i:19282649 original size:606 final size:606
Alignment explanation
Indices: 19281497--19282698 Score: 2314
Period size: 606 Copynumber: 2.0 Consensus size: 606
19281487 GGGTATTTTA
19281497 GTAATTCTACAACTTATCCACTTGGGCCTACGGACCCATTGGGACCACATGGCCCATTTCAGCCC
1 GTAATTCTACAACTTATCCACTTGGGCCTACGGACCCATTGGGACCACATGGCCCATTTCAGCCC
19281562 ATCGCGGCCCGAAATAGCCGTCCTACTGCTAGAGTAATGAGAAATACACACCTGTTAGGAGACTG
66 ATCGCGGCCCGAAATAGCCGTCCTACTGCTAGAGTAATGAGAAATACACACCTGTTAGGAGACTG
*
19281627 CAGTTAATCCGCGCTCCAAACACTCTTAGCTGACGCCCAACCCAAACGAGCACGTCACAAAGCGA
131 CAGTTAATCCGCGCTCCAAACACTCTTAGCTGACGCCCAACCCAAACGAACACGTCACAAAGCGA
19281692 AAGGGATCAGCCAAGAAGGGTATGCCTACTCTCCTCATGGTTTGCTCTATTTAAAGCCAGCTCTC
196 AAGGGATCAGCCAAGAAGGGTATGCCTACTCTCCTCATGGTTTGCTCTATTTAAAGCCAGCTCTC
19281757 CATCTACTCTTATGTTAGCTTCCCGATGTGGGATCCCTCCATCACCAGAGTTTAAAACCAACACC
261 CATCTACTCTTATGTTAGCTTCCCGATGTGGGATCCCTCCATCACCAGAGTTTAAAACCAACACC
* *
19281822 AACTCTTGCCGTCCCAACATAGCAAAATAATCAACCTTTGCGTGCCAAGGGATTCGAACCAAAGT
326 AACTCTTGCCATCCCAACATAGCAAAATAATCAACCTTTGCATGCCAAGGGATTCGAACCAAAGT
19281887 CCTCTCACATGCCAACTCACGCCACCACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAAC
391 CCTCTCACATGCCAACTCACGCCACCACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAAC
** *
19281952 ACATTAAACTTTAAAGCGCACCTACTTGCCTCCAGGTTTATTGAAAGGAAAAACCAAAATATATT
456 ACATTAAACTTTAAAGCGCACCTACTTGCCTCCAAATTTATTGAAAAGAAAAACCAAAATATATT
19282017 GCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTTCCTCTATGGCGTCACTTCCTTGTCCCCTA
521 GCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTTCCTCTATGGCGTCACTTCCTTGTCCCCTA
19282082 AGTGGCGCCACTGATATTTCG
586 AGTGGCGCCACTGATATTTCG
19282103 GTAATTCTACAACTTATCCACTTGGGCCTACGGACCCATTGGGACCACATGGCCCATTTCAGCCC
1 GTAATTCTACAACTTATCCACTTGGGCCTACGGACCCATTGGGACCACATGGCCCATTTCAGCCC
* *
19282168 ATCGCGGCCCGAAATAGCCGTCCTACTGCTAGAGTAATGAGAAATACACACTTGTTAGTAGACTG
66 ATCGCGGCCCGAAATAGCCGTCCTACTGCTAGAGTAATGAGAAATACACACCTGTTAGGAGACTG
*
19282233 CAGTTAATCTGCGCTCCAAACACTCTTAGCTGACGCCCAACCCAAACGAACACGTCACAAAGCGA
131 CAGTTAATCCGCGCTCCAAACACTCTTAGCTGACGCCCAACCCAAACGAACACGTCACAAAGCGA
19282298 AAGGGATCAGCCAAGAAGGGTATGCCTACTCTCCTCATGGTTTGCTCTATTTAAAGCCAGCTCTC
196 AAGGGATCAGCCAAGAAGGGTATGCCTACTCTCCTCATGGTTTGCTCTATTTAAAGCCAGCTCTC
19282363 CATCTACTCTTATGTTAGCTTCCCGATGTGGGATCCCTCCATCACCAGAGTTTAAAACCAACACC
261 CATCTACTCTTATGTTAGCTTCCCGATGTGGGATCCCTCCATCACCAGAGTTTAAAACCAACACC
19282428 AACTCTTGCCATCCCAACATAGCAAAATAATCAACCTTTGCATGCCAAGGGATTCGAACCAAAGT
326 AACTCTTGCCATCCCAACATAGCAAAATAATCAACCTTTGCATGCCAAGGGATTCGAACCAAAGT
19282493 CCTCTCACATGCCAACTCACGCCACCACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAAC
391 CCTCTCACATGCCAACTCACGCCACCACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAAC
*
19282558 ACATTAAACTTTAAAGCGCACCTACTTGCTTCCAAATTTATTGAAAAGAAAAACCAAAATATATT
456 ACATTAAACTTTAAAGCGCACCTACTTGCCTCCAAATTTATTGAAAAGAAAAACCAAAATATATT
19282623 GCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTTCCTCTATGGCGTCACTTCCTTGTCCCCTA
521 GCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTTCCTCTATGGCGTCACTTCCTTGTCCCCTA
19282688 AGTGGCGCCAC
586 AGTGGCGCCAC
19282699 CTTGCCACTA
Statistics
Matches: 586, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
606 586 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (606 bp):
GTAATTCTACAACTTATCCACTTGGGCCTACGGACCCATTGGGACCACATGGCCCATTTCAGCCC
ATCGCGGCCCGAAATAGCCGTCCTACTGCTAGAGTAATGAGAAATACACACCTGTTAGGAGACTG
CAGTTAATCCGCGCTCCAAACACTCTTAGCTGACGCCCAACCCAAACGAACACGTCACAAAGCGA
AAGGGATCAGCCAAGAAGGGTATGCCTACTCTCCTCATGGTTTGCTCTATTTAAAGCCAGCTCTC
CATCTACTCTTATGTTAGCTTCCCGATGTGGGATCCCTCCATCACCAGAGTTTAAAACCAACACC
AACTCTTGCCATCCCAACATAGCAAAATAATCAACCTTTGCATGCCAAGGGATTCGAACCAAAGT
CCTCTCACATGCCAACTCACGCCACCACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAAC
ACATTAAACTTTAAAGCGCACCTACTTGCCTCCAAATTTATTGAAAAGAAAAACCAAAATATATT
GCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTTCCTCTATGGCGTCACTTCCTTGTCCCCTA
AGTGGCGCCACTGATATTTCG
Found at i:19283193 original size:593 final size:593
Alignment explanation
Indices: 19282478--19283663 Score: 2273
Period size: 593 Copynumber: 2.0 Consensus size: 593
19282468 CATGCCAAGG
* *
19282478 GATTCGAACCAAAGTCCTCTCACATGCCAACTCACGCCACCACCACTAGGCCATCAACTCATTTG
1 GATTAGAACCAAAGTCCTCTCACATGCCAACTCACGCCACCACCACTAGCCCATCAACTCATTTG
*
19282543 TGTCATAAATCCAACACATTAAACTTTAAAGCGCACCTACTTGCTTCCAAATTTATTGAAAAGAA
66 TGTCATAAATCCAACACATTAAACTTTAAAGCGCACCTACTTGCCTCCAAATTTATTGAAAAGAA
19282608 AAACCAAAATATATTGCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTTCCTCTATGGCGTCA
131 AAACCAAAATATATTGCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTTCCTCTATGGCGTCA
19282673 CTTCCTTGTCCCCTAAGTGGCGCCACCTTGCCACTACACCACACTCCTTTTTGTGTCATCTTTTA
196 CTTCCTTGTCCCCTAAGTGGCGCCACCTTGCCACTACACCACACTCCTTTTTGTGTCATCTTTTA
*
19282738 CCCCTTTACTCTTAAAAGCCCAAACGCCAATTGCATCACCTGTTCATAAAATTAAAATTCCGAAG
261 CCCCTTTACTCTTAAAAGCCCAAACGCCAATTGCATCACCTGTTCATAAAATTAAAATTCCAAAG
19282803 ACTACCACGGATTTAACTTAAGTTTGGGCCTTCCAAAGGCCCACTAACCTACTAAAATATATATT
326 ACTACCACGGATTTAACTTAAGTTTGGGCCTTCCAAAGGCCCACTAACCTACTAAAATATATATT
19282868 TTAACCAACCAGAACACACACAAATTTTAAAAATCACAAAAACACAGAAAACCTAAAAATTGGGG
391 TTAACCAACCAGAACACACACAAATTTTAAAAATCACAAAAACACAGAAAACCTAAAAATTGGGG
19282933 CGTTACAACTCTACCCTCCTTAAAGAAATTTCGTCCTCGAAATTTTACCTGAATCAAACAGATAA
456 CGTTACAACTCTACCCTCCTTAAAGAAATTTCGTCCTCGAAATTTTACCTGAATCAAACAGATAA
19282998 GGATATTGTTGATGCATCGCCACTTCTGGCTCCCAAGTAGCTTCCTCTCTGCCATGATTATGCCA
521 GGATATTGTTGATGCATCGCCACTTCTGGCTCCCAAGTAGCTTCCTCTCTGCCATGATTATGCCA
19283063 CAGTACCT
586 CAGTACCT
*
19283071 GATTAGAACCAAAGTCCTCTCACATGCCAACTCATGCCACCACCACTAGCCCATCAACTCATTTG
1 GATTAGAACCAAAGTCCTCTCACATGCCAACTCACGCCACCACCACTAGCCCATCAACTCATTTG
* ** *
19283136 TGTCATAAATCCAACACATTAAACTTTAAAGCGCACTTACTTGCCTCCAGGTTTATTGAAAGGAA
66 TGTCATAAATCCAACACATTAAACTTTAAAGCGCACCTACTTGCCTCCAAATTTATTGAAAAGAA
19283201 AAACCAAAATATATTGCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTTCCTCTATGGCGTCA
131 AAACCAAAATATATTGCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTTCCTCTATGGCGTCA
19283266 CTTCCTTGTCCCCTAAGTGGCGCCACCTTGCCACTACACCACACTCCTTTTTGTGTCATCTTTTA
196 CTTCCTTGTCCCCTAAGTGGCGCCACCTTGCCACTACACCACACTCCTTTTTGTGTCATCTTTTA
19283331 CCCCTTTACTCTTAAAAGCCCAAACGCCAATTGCATCACCTGTTCATAAAATTAAAATTCCAAAG
261 CCCCTTTACTCTTAAAAGCCCAAACGCCAATTGCATCACCTGTTCATAAAATTAAAATTCCAAAG
*
19283396 ACTACCACGGATTTAACTTAAGTTTGGGCCTTCCAAAGGCCTACTAACCTACTAAAATATATATT
326 ACTACCACGGATTTAACTTAAGTTTGGGCCTTCCAAAGGCCCACTAACCTACTAAAATATATATT
19283461 TTAACCAACCAGAACACACACAAATTTTAAAAATCACAAAAACACAGAAAACCTAAAAATTGGGG
391 TTAACCAACCAGAACACACACAAATTTTAAAAATCACAAAAACACAGAAAACCTAAAAATTGGGG
*
19283526 CGTTACAACTCTACCCTCCTTAAAGAAATTTCGTCCTCGAAATTTTACCTGGATCAAACAGATAA
456 CGTTACAACTCTACCCTCCTTAAAGAAATTTCGTCCTCGAAATTTTACCTGAATCAAACAGATAA
19283591 GGATATTGTTGATGCATCGCCACTTCTGGCTCCCAAGTAGCTTCCTCTCTGCCATGATTATGCCA
521 GGATATTGTTGATGCATCGCCACTTCTGGCTCCCAAGTAGCTTCCTCTCTGCCATGATTATGCCA
19283656 CAGTACCT
586 CAGTACCT
19283664 TTACTAGCGG
Statistics
Matches: 582, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
593 582 1.00
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (593 bp):
GATTAGAACCAAAGTCCTCTCACATGCCAACTCACGCCACCACCACTAGCCCATCAACTCATTTG
TGTCATAAATCCAACACATTAAACTTTAAAGCGCACCTACTTGCCTCCAAATTTATTGAAAAGAA
AAACCAAAATATATTGCAAGAGCCAAGACTTGAACCTTGGACCCCTTGCTTCCTCTATGGCGTCA
CTTCCTTGTCCCCTAAGTGGCGCCACCTTGCCACTACACCACACTCCTTTTTGTGTCATCTTTTA
CCCCTTTACTCTTAAAAGCCCAAACGCCAATTGCATCACCTGTTCATAAAATTAAAATTCCAAAG
ACTACCACGGATTTAACTTAAGTTTGGGCCTTCCAAAGGCCCACTAACCTACTAAAATATATATT
TTAACCAACCAGAACACACACAAATTTTAAAAATCACAAAAACACAGAAAACCTAAAAATTGGGG
CGTTACAACTCTACCCTCCTTAAAGAAATTTCGTCCTCGAAATTTTACCTGAATCAAACAGATAA
GGATATTGTTGATGCATCGCCACTTCTGGCTCCCAAGTAGCTTCCTCTCTGCCATGATTATGCCA
CAGTACCT
Found at i:19291554 original size:49 final size:47
Alignment explanation
Indices: 19291462--19291925 Score: 775
Period size: 47 Copynumber: 9.7 Consensus size: 47
19291452 TTAGGATTCT
*
19291462 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19291509 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
19291558 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
19291607 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
19291656 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19291703 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19291750 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
19291797 ACGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
19291844 ATGTGATGAATGTGAAAGCGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
19291891 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
19291926 TCCCGAAGGG
Statistics
Matches: 400, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 256 0.64
49 144 0.36
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:19304192 original size:27 final size:27
Alignment explanation
Indices: 19304161--19304338 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
19304151 TAAATTGTAC
19304161 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
19304188 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
19304214 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
19304242 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
19304270 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
19304297 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
19304324 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
19304339 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:19304275 original size:82 final size:81
Alignment explanation
Indices: 19304162--19304317 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
19304152 AAATTGTACA
* *
19304162 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
19304226 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
19304243 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
19304308 TGCGAGTTGA
65 TGCGAATTGA
19304318 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:19304329 original size:82 final size:81
Alignment explanation
Indices: 19304158--19304338 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
19304148 GATTAAATTG
* *
19304158 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
19304223 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
19304239 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
19304303 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
19304321 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
19304339 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:19306060 original size:68 final size:68
Alignment explanation
Indices: 19305960--19306095 Score: 245
Period size: 68 Copynumber: 2.0 Consensus size: 68
19305950 GCTTAACAAC
*
19305960 CCTAAAAAGTCATCAAGGTGGGAATTAACCCAAATTTGTTATGGCCTATCCATGAACACCTTAAC
1 CCTAAAAAGTCATCAAGGTGGGAATTAACCCAAATTTGGTATGGCCTATCCATGAACACCTTAAC
19306025 GCT
66 GCT
* *
19306028 CCTAAAAAGTCATCAAGGTGGGAATTAACCCAAATTTGGTATGGCCTATCCGTGAACATCTTAAC
1 CCTAAAAAGTCATCAAGGTGGGAATTAACCCAAATTTGGTATGGCCTATCCATGAACACCTTAAC
19306093 GCT
66 GCT
19306096 GAATCGGTAT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.26
Consensus pattern (68 bp):
CCTAAAAAGTCATCAAGGTGGGAATTAACCCAAATTTGGTATGGCCTATCCATGAACACCTTAAC
GCT
Found at i:19306884 original size:42 final size:42
Alignment explanation
Indices: 19306794--19306886 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
19306784 GACGGCTGGA
* * *
19306794 ACACATGCCTATGGGGCAAGCCGGTTGTCACACTCGATTTAG
1 ACACACGCCCATGGGGCAAGCCGGTTGTCACACTCGATCTAG
* *
19306836 ATACACGCCCATGGGGCAAGCC-GTGTGTCACACAT-GGTCTAG
1 ACACACGCCCATGGGGCAAGCCGGT-TGTCACAC-TCGATCTAG
19306878 ACACACGCC
1 ACACACGCC
19306887 TGTGTGTCTA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
41 2 0.05
42 40 0.93
43 1 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (42 bp):
ACACACGCCCATGGGGCAAGCCGGTTGTCACACTCGATCTAG
Done.