Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 68 of 279
Found at i:22494679 original size:164 final size:163
Alignment explanation
Indices: 22494408--22494728 Score: 552
Period size: 164 Copynumber: 2.0 Consensus size: 163
22494398 TTGTTTTCCT
* * *
22494408 ATAATTTTAACTGTATATATGCAAGACATTAGCTTTTGATTGTTTCAACCATTATATTTATCGAT
1 ATAATTTTAACTGCATATATGCAAGACATTAGCTTTTGATTGTTTCAACCATTAGATTGATCGAT
* *
22494473 TATGTCTTTAGTACTTAATTATTATGTGTCAGCTTCATTAGTATGGGATGCCAATAATGATTTTT
66 TATGTCTTTACTACTTAATTATTACGTGTCAGCTTCATTAGTATGGGATGCCAATAATGA-TTTT
* *
22494538 TTTATGTGTATGAATGCAAATTTTTATGCTGATA
130 TTTATGTGTACGAATGCAAATGTTTATGCTGATA
*
22494572 ATAATTTTAACTGCATATATGCAAGACATTAGCTTTTGATTGTTTCAACCATTAGATTGATTGAT
1 ATAATTTTAACTGCATATATGCAAGACATTAGCTTTTGATTGTTTCAACCATTAGATTGATCGAT
*
22494637 TATGTCTTTACTACTTAATTATTACGTGTCAGTTTCATTAGTATGGGATGCCAATAATGATTTTT
66 TATGTCTTTACTACTTAATTATTACGTGTCAGCTTCATTAGTATGGGATGCCAATAATGATTTTT
22494702 TTATGTGTACGAATGCAAATGTTTATG
131 TTATGTGTACGAATGCAAATGTTTATG
22494729 TGACTGCTTG
Statistics
Matches: 148, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
163 30 0.20
164 118 0.80
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.45
Consensus pattern (163 bp):
ATAATTTTAACTGCATATATGCAAGACATTAGCTTTTGATTGTTTCAACCATTAGATTGATCGAT
TATGTCTTTACTACTTAATTATTACGTGTCAGCTTCATTAGTATGGGATGCCAATAATGATTTTT
TTATGTGTACGAATGCAAATGTTTATGCTGATA
Found at i:22497436 original size:7 final size:7
Alignment explanation
Indices: 22497415--22497451 Score: 56
Period size: 7 Copynumber: 5.1 Consensus size: 7
22497405 TGTTTGACAT
22497415 TGATGATA
1 TGAT-ATA
*
22497423 TGGTATA
1 TGATATA
22497430 TGATATA
1 TGATATA
22497437 TGATATA
1 TGATATA
22497444 TGATATA
1 TGATATA
22497451 T
1 T
22497452 ACATACATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
7 24 0.89
8 3 0.11
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (7 bp):
TGATATA
Found at i:22515046 original size:126 final size:126
Alignment explanation
Indices: 22514821--22515078 Score: 394
Period size: 126 Copynumber: 2.0 Consensus size: 126
22514811 ACAAATGCAT
* * * *
22514821 ATTACTAAATTGATGATCTAAAAGCGGGTAAGCAGGTGAGGCACTTCCCGAATTTGCTGCTAAGT
1 ATTACTAAACTGATGATCCAAAAGCGGGTAAGCAGGTGAAGCACTTCCCGAATTTGCTGCTAAGG
* *
22514886 AACTTGTACTGTCTTGCCTGTTATGACCAGAGAAGCTATTGTGTGTAGAGAGGAGCTCAGA
66 AACTTGTACTGTCTTGCCTGTTATGACCAGAGAAGCTAATGTGTGTAGAGAGAAGCTCAGA
* * *
22514947 ATTACTCAACTGATGATCCAAACGCGGGTAAAG-AGGTGAAGCACTTCCCGTATTTGCTGCTAAG
1 ATTACTAAACTGATGATCCAAAAGCGGGT-AAGCAGGTGAAGCACTTCCCGAATTTGCTGCTAAG
*
22515011 GAACTTGTACTGTCTTG-CTGGTTATGACCAGAGAAGCTAATGTGTGTGGAGAGAAGCTCAGA
65 GAACTTGTACTGTCTTGCCT-GTTATGACCAGAGAAGCTAATGTGTGTAGAGAGAAGCTCAGA
22515073 ATTACT
1 ATTACT
22515079 TTCAGGAGGA
Statistics
Matches: 120, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
125 2 0.02
126 115 0.96
127 3 0.03
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (126 bp):
ATTACTAAACTGATGATCCAAAAGCGGGTAAGCAGGTGAAGCACTTCCCGAATTTGCTGCTAAGG
AACTTGTACTGTCTTGCCTGTTATGACCAGAGAAGCTAATGTGTGTAGAGAGAAGCTCAGA
Found at i:22515153 original size:42 final size:42
Alignment explanation
Indices: 22515084--22515168 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
22515074 TTACTTTCAG
* * *
22515084 GAGGAGTATATTGTCCAGGTTGTTGATAAGAGGAGGATGATT
1 GAGGAGGATATTGTCCAGGCTGCTGATAAGAGGAGGATGATT
* *
22515126 GAGGAGGATATTGTGCAGGCTGCTGATAAGTGGAGGATGATT
1 GAGGAGGATATTGTCCAGGCTGCTGATAAGAGGAGGATGATT
22515168 G
1 G
22515169 CGGGTTACTT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.27, C:0.06, G:0.39, T:0.28
Consensus pattern (42 bp):
GAGGAGGATATTGTCCAGGCTGCTGATAAGAGGAGGATGATT
Found at i:22516646 original size:16 final size:17
Alignment explanation
Indices: 22516620--22516654 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
22516610 CTCTCAATCT
22516620 TTTTATATTTTGTTTAA
1 TTTTATATTTTGTTTAA
*
22516637 TTTT-TATTTTTTTTAA
1 TTTTATATTTTGTTTAA
22516653 TT
1 TT
22516655 AAATTTGGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (17 bp):
TTTTATATTTTGTTTAA
Found at i:22523232 original size:53 final size:53
Alignment explanation
Indices: 22523151--22523301 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
22523141 CTTACACGGT
* *
22523151 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
22523206 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
22523259 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
22523302 GCACACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:22525122 original size:46 final size:46
Alignment explanation
Indices: 22525069--22525243 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
22525059 TATTTGGGCA
*
22525069 TCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22525115 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
* * * * *
22525159 GCATTGAGCTCGTTGAGTTGAGTTCAAGTTCACTTATGGATGCGAACG
1 TC--CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
22525207 CCCGAGCTAGTTGAGTTGGGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22525244 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 2 0.02
46 81 0.79
47 2 0.02
48 2 0.02
49 4 0.04
50 2 0.02
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.31
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22530344 original size:30 final size:30
Alignment explanation
Indices: 22530280--22530336 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
22530270 AATAACCTAT
*
22530280 ATTTTTATAATTTTTAAAAGATTAATTCAA
1 ATTTTTATAATTTTTAAAAGATTAAGTCAA
* **
22530310 ATTTTTATTATTTTTAAGGGATTAAGT
1 ATTTTTATAATTTTTAAAAGATTAAGT
22530337 GTAATTTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.37, C:0.02, G:0.09, T:0.53
Consensus pattern (30 bp):
ATTTTTATAATTTTTAAAAGATTAAGTCAA
Found at i:22532784 original size:3 final size:3
Alignment explanation
Indices: 22532776--22532800 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
22532766 AAAATGGAAA
22532776 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
22532801 TGATGATCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:22539891 original size:45 final size:42
Alignment explanation
Indices: 22539814--22539898 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
22539804 TTACTTTCAG
*
22539814 GAGGAGGATATTGTGCAGGTTGTTGATAAGAGGATGATGATT
1 GAGGAGGATATTGTGCAGGCTGTTGATAAGAGGATGATGATT
*
22539856 GAGGAGGATATTGTGCAGGCTGTTGATAAGTA-GAGGATGATT
1 GAGGAGGATATTGTGCAGGCTGTTGATAAG-AGGATGATGATT
22539898 G
1 G
22539899 CGGATTAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
42 39 0.98
43 1 0.03
ACGTcount: A:0.28, C:0.04, G:0.39, T:0.29
Consensus pattern (42 bp):
GAGGAGGATATTGTGCAGGCTGTTGATAAGAGGATGATGATT
Found at i:22540797 original size:16 final size:16
Alignment explanation
Indices: 22540756--22540799 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
22540746 ATAGTAAAAA
*
22540756 TATAATTTTGTTATTTT
1 TATAATTTT-ATATTTT
*
22540773 AATAA-TTTATATTTT
1 TATAATTTTATATTTT
22540788 TATAATTTTATA
1 TATAATTTTATA
22540800 AGGTTGAATC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 10 0.43
16 9 0.39
17 4 0.17
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (16 bp):
TATAATTTTATATTTT
Found at i:22553682 original size:21 final size:21
Alignment explanation
Indices: 22553656--22553696 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
22553646 AGACGAGCAA
* *
22553656 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
22553677 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
22553697 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:22560855 original size:23 final size:23
Alignment explanation
Indices: 22560829--22560926 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
22560819 ATAAGTGCCA
22560829 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
22560852 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
22560875 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
22560897 CACTGAAATGTAGCCGAAGTTAC
1 CACTGATATGTAGCCGAAGCTAC
22560920 CACTGAT
1 CACTGAT
22560927 CAATAACACT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
22 20 0.29
23 48 0.71
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:22560894 original size:45 final size:45
Alignment explanation
Indices: 22560836--22560924 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
22560826 CCACACTGAT
* *
22560836 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
*
22560881 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGTTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
22560925 ATCAATAACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.20
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:22563742 original size:29 final size:30
Alignment explanation
Indices: 22563690--22563751 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
22563680 GATTTTCCCT
*
22563690 TTTCTCCCTTTCTTTCTTTCTTTCATTT-C
1 TTTCTCCCTTTCTTTCTCTCTTTCATTTGC
* *
22563719 TTTCTCCCTGTTC-TTCTCTGTTTCGTTTGC
1 TTTCTCCCT-TTCTTTCTCTCTTTCATTTGC
22563749 TTT
1 TTT
22563752 GTTTCTCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 21 0.75
30 7 0.25
ACGTcount: A:0.02, C:0.29, G:0.06, T:0.63
Consensus pattern (30 bp):
TTTCTCCCTTTCTTTCTCTCTTTCATTTGC
Found at i:22563764 original size:22 final size:21
Alignment explanation
Indices: 22563732--22563772 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
22563722 CTCCCTGTTC
*
22563732 TTCTCTGTTTCGTTTGCTTTGT
1 TTCTCTGTTTCATTT-CTTTGT
*
22563754 TTCTCTTTTTCATTTCTTT
1 TTCTCTGTTTCATTTCTTT
22563773 TATTTCATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.02, C:0.20, G:0.10, T:0.68
Consensus pattern (21 bp):
TTCTCTGTTTCATTTCTTTGT
Found at i:22568320 original size:346 final size:346
Alignment explanation
Indices: 22567686--22568374 Score: 1218
Period size: 346 Copynumber: 2.0 Consensus size: 346
22567676 AATAAATATA
*
22567686 GCCAAACCTTGAGAAAAACATCAACTGCTTTGGATATTGCGACACTAATGCATGTGTGTCACGAC
1 GCCAAACCTTGAGAAAAACATCAACTGCTTTGGATATTGCAACACTAATGCATGTGTGTCACGAC
*
22567751 ATTGACCCTCCATCACCTTAGAGGAGCAAAAATTTAATGAAAAACCAACCTGAAGCAGTCTACCA
66 ATTAACCCTCCATCACCTTAGAGGAGCAAAAATTTAATGAAAAACCAACCTGAAGCAGTCTACCA
22567816 AAGATGTCGCAACATTAGGTGTGTTGTGTCGTGACACTAAACCCCAATGTCTTGACTTCAAGCCT
131 AAGATGTCGCAACATTAGGTGTGTTGTGTCGTGACACTAAACCCCAATGTCTTGACTTCAAGCCT
*
22567881 TTAAGGTTGTGACTACAAGCTGATGGTTGAAGTGAATGAACCTAAGGCCACTAATAAGGGTGTCG
196 TTAAGGTTGCGACTACAAGCTGATGGTTGAAGTGAATGAACCTAAGGCCACTAATAAGGGTGTCG
* *
22567946 TGACACCGATAACCCCCTAACCAATGTTGTGCTACTATCGAGAATGTCGTGACATCAAAGCTTAG
261 TGACACCAAGAACCCCCTAACCAATGTTGTGCTACTATCGAGAATGTCGTGACATCAAAGCTTAG
22568011 TTGTCGCCATACTGAAGTATG
326 TTGTCGCCATACTGAAGTATG
* * * * *
22568032 GCCAAACCTTGAGGAAAGCATCAACTGTTTTGGATATTGCAACACTGATGCATGTGTGTCACGAT
1 GCCAAACCTTGAGAAAAACATCAACTGCTTTGGATATTGCAACACTAATGCATGTGTGTCACGAC
* *
22568097 ATTAACCCTCCATCACCTTAGAGGAGTAAAACTTTAATGAAAAACCAACCTGAAGCAGTCTACCA
66 ATTAACCCTCCATCACCTTAGAGGAGCAAAAATTTAATGAAAAACCAACCTGAAGCAGTCTACCA
* *
22568162 AAGATGTCGCAACATTAGGTGTGTTGTGTCGTGGCTCTAAACCCCAATGTCTTGACTTCAAGCCT
131 AAGATGTCGCAACATTAGGTGTGTTGTGTCGTGACACTAAACCCCAATGTCTTGACTTCAAGCCT
22568227 TTAAGGTTGCGACTACAAGCTGATGGTTGAAGTGAATGAACCTAAGGCCACTAATAAGGGTGTCG
196 TTAAGGTTGCGACTACAAGCTGATGGTTGAAGTGAATGAACCTAAGGCCACTAATAAGGGTGTCG
* *
22568292 TGACACCAAGAACCCCCT-ACCTAATGTTGTGCTACTATCGAGAATGTCGTGGCATCAAAGCTTG
261 TGACACCAAGAACCCCCTAACC-AATGTTGTGCTACTATCGAGAATGTCGTGACATCAAAGCTTA
22568356 GTTGTCGCCATACTGAAGT
325 GTTGTCGCCATACTGAAGT
22568375 CTGACGGGGT
Statistics
Matches: 326, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
345 3 0.01
346 323 0.99
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (346 bp):
GCCAAACCTTGAGAAAAACATCAACTGCTTTGGATATTGCAACACTAATGCATGTGTGTCACGAC
ATTAACCCTCCATCACCTTAGAGGAGCAAAAATTTAATGAAAAACCAACCTGAAGCAGTCTACCA
AAGATGTCGCAACATTAGGTGTGTTGTGTCGTGACACTAAACCCCAATGTCTTGACTTCAAGCCT
TTAAGGTTGCGACTACAAGCTGATGGTTGAAGTGAATGAACCTAAGGCCACTAATAAGGGTGTCG
TGACACCAAGAACCCCCTAACCAATGTTGTGCTACTATCGAGAATGTCGTGACATCAAAGCTTAG
TTGTCGCCATACTGAAGTATG
Found at i:22570712 original size:44 final size:45
Alignment explanation
Indices: 22570606--22570737 Score: 131
Period size: 44 Copynumber: 2.9 Consensus size: 45
22570596 ACAGGACAGA
* * * *
22570606 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTA-AAATATGGCATTAGAG
* * *
22570652 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTAGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTAGAG
* ** * *
22570696 ATAGGAATAATTCATGTAAGTCCATGTTAAAGACATGGCATT
1 ACAGGAATAAGCCATGTAAGTCCATATTAAA-ATATGGCATT
22570738 GGCAGGATAT
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
44 35 0.49
45 1 0.01
46 35 0.49
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (45 bp):
ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTAGAG
Found at i:22571617 original size:41 final size:41
Alignment explanation
Indices: 22571557--22571637 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
22571547 GTACAAAACT
* * *
22571557 AATTAGAAGGTTTACTTTATATGGTTATAATCCTTGTTGAG
1 AATTAGAAGGTGTAATTTATATGGTTAGAATCCTTGTTGAG
22571598 AATTAGAAGGTGTAATTTATATGGTTAGAATCCTTGTTGA
1 AATTAGAAGGTGTAATTTATATGGTTAGAATCCTTGTTGA
22571638 ATCTAGTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.42
Consensus pattern (41 bp):
AATTAGAAGGTGTAATTTATATGGTTAGAATCCTTGTTGAG
Found at i:22573312 original size:105 final size:105
Alignment explanation
Indices: 22573161--22573370 Score: 321
Period size: 105 Copynumber: 2.0 Consensus size: 105
22573151 CGTTTTATCT
* * *
22573161 TCTAAAAGTTGTGAGTCATGTTTATTAACTATTATTCTCAACAAAGTGTCCCTATAAGAGACCAA
1 TCTAAAAGTTGTGAGTCATGTTTAATAACTATTACTCTCAACAAAGTGTCCCTATAAGAAACCAA
* * * *
22573226 CTTTCTACTAGAATCGTCGCTGACAACGAACCTTATAATC
66 CTTTCTACCAGAATCGTAGCTGACAACAAACCTTAAAATC
* * * *
22573266 TCTAAAAGTTGTGAGTCATGTTTAATAACTATTGCTCTCAATAAAGTGTCCGTATAAGAAACTAA
1 TCTAAAAGTTGTGAGTCATGTTTAATAACTATTACTCTCAACAAAGTGTCCCTATAAGAAACCAA
22573331 CTTTCTACCAGAATCGTAGCTGACAACAAACCTTAAAATC
66 CTTTCTACCAGAATCGTAGCTGACAACAAACCTTAAAATC
22573371 ATGAACTCCT
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
105 94 1.00
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.31
Consensus pattern (105 bp):
TCTAAAAGTTGTGAGTCATGTTTAATAACTATTACTCTCAACAAAGTGTCCCTATAAGAAACCAA
CTTTCTACCAGAATCGTAGCTGACAACAAACCTTAAAATC
Found at i:22580123 original size:30 final size:31
Alignment explanation
Indices: 22580089--22580147 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
22580079 AAATTGGTTT
**
22580089 TTTAAAAATTGTAATTAATTAGA-CTTTTAA
1 TTTAAAAATAATAATTAATTAGATCTTTTAA
*
22580119 TTTAAAAATAATAATTAATTGGATCTTTT
1 TTTAAAAATAATAATTAATTAGATCTTTT
22580148 GAACCGTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.47
Consensus pattern (31 bp):
TTTAAAAATAATAATTAATTAGATCTTTTAA
Found at i:22591360 original size:3 final size:3
Alignment explanation
Indices: 22591352--22591376 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
22591342 GTTACTGGGA
22591352 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
22591377 TATTACTACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:22594705 original size:23 final size:21
Alignment explanation
Indices: 22594682--22594722 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
22594672 ATATTACTTA
*
22594682 AAATTAATTATTGAATATAATT
1 AAATT-ATTAATGAATATAATT
*
22594704 AAATTTTTAATGAATATAA
1 AAATTATTAATGAATATAA
22594723 ATTTTAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (21 bp):
AAATTATTAATGAATATAATT
Found at i:22598707 original size:20 final size:20
Alignment explanation
Indices: 22598670--22598707 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22598660 ATGGAATTTG
*
22598670 TATGAAAATATAAGATTAAT
1 TATGAAAATATAAAATTAAT
22598690 TATGAAGAATA-AAAATTA
1 TATGAA-AATATAAAATTA
22598708 GTATCGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (20 bp):
TATGAAAATATAAAATTAAT
Found at i:22603512 original size:14 final size:14
Alignment explanation
Indices: 22603493--22603527 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
22603483 ATCTGTGTCA
**
22603493 TAATTAATTTTTAT
1 TAATTAATTTAAAT
22603507 TAATTAATTTAAAT
1 TAATTAATTTAAAT
22603521 TAATTAA
1 TAATTAA
22603528 GAAATAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TAATTAATTTAAAT
Found at i:22612679 original size:6 final size:7
Alignment explanation
Indices: 22612664--22612688 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22612654 ATCCGTTCAC
22612664 TTTTCTT
1 TTTTCTT
22612671 TTTTCTT
1 TTTTCTT
22612678 TTTTCTT
1 TTTTCTT
22612685 TTTT
1 TTTT
22612689 TTATTCTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTCTT
Found at i:22617568 original size:55 final size:55
Alignment explanation
Indices: 22617501--22617606 Score: 167
Period size: 55 Copynumber: 1.9 Consensus size: 55
22617491 TTAACTTTTT
*
22617501 AAGCTTGTCAGCCTTTTAAGAATACTACATCTAACCCATATTTTAAGTTGGTTTA
1 AAGCTTGCCAGCCTTTTAAGAATACTACATCTAACCCATATTTTAAGTTGGTTTA
* * **
22617556 AAGCTTGCCAGCCTTTTAAGGATACTATATCTAAGTCATATTTTAAGTTGG
1 AAGCTTGCCAGCCTTTTAAGAATACTACATCTAACCCATATTTTAAGTTGG
22617607 ACCTAAGATT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (55 bp):
AAGCTTGCCAGCCTTTTAAGAATACTACATCTAACCCATATTTTAAGTTGGTTTA
Found at i:22620816 original size:25 final size:26
Alignment explanation
Indices: 22620774--22620827 Score: 92
Period size: 25 Copynumber: 2.1 Consensus size: 26
22620764 ACTTTTACCT
*
22620774 GGAAGAGAAGATGAAGAACGGAAGAA
1 GGAAAAGAAGATGAAGAACGGAAGAA
22620800 GGAAAAGAA-ATGAAGAACGGAAGAA
1 GGAAAAGAAGATGAAGAACGGAAGAA
22620825 GGA
1 GGA
22620828 GAATGAGCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 19 0.70
26 8 0.30
ACGTcount: A:0.56, C:0.04, G:0.37, T:0.04
Consensus pattern (26 bp):
GGAAAAGAAGATGAAGAACGGAAGAA
Found at i:22620895 original size:6 final size:6
Alignment explanation
Indices: 22620884--22620911 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
22620874 CCAAACAACC
22620884 GGAAGG GGAAGG GGAAGG GGAAGG GGAA
1 GGAAGG GGAAGG GGAAGG GGAAGG GGAA
22620912 ATGGGAGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (6 bp):
GGAAGG
Found at i:22621216 original size:17 final size:17
Alignment explanation
Indices: 22621196--22621229 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
22621186 AAATAAATTT
22621196 TTAATTAAAAATTTTAA
1 TTAATTAAAAATTTTAA
*
22621213 TTAATTAAAATTTTTAA
1 TTAATTAAAAATTTTAA
22621230 ACCTAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAATTAAAAATTTTAA
Found at i:22621771 original size:17 final size:17
Alignment explanation
Indices: 22621751--22621784 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22621741 AGGTTTAGGT
22621751 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
22621768 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
22621785 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:22622249 original size:18 final size:18
Alignment explanation
Indices: 22622226--22622265 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
22622216 GCATAATTTT
* **
22622226 TTTTCAGATTTATTAAAA
1 TTTTCAAATTTAACAAAA
22622244 TTTTCAAATTTAACAAAA
1 TTTTCAAATTTAACAAAA
22622262 TTTT
1 TTTT
22622266 TAACTTATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (18 bp):
TTTTCAAATTTAACAAAA
Found at i:22629246 original size:18 final size:19
Alignment explanation
Indices: 22629209--22629247 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
22629199 ATTATAAAAT
*
22629209 AATTCAAAATAATTTTTAA
1 AATTCAAAATAATTTATAA
*
22629228 AATTCTAAAT-ATTTATAA
1 AATTCAAAATAATTTATAA
22629246 AA
1 AA
22629248 ACCCTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTCAAAATAATTTATAA
Found at i:22631260 original size:20 final size:20
Alignment explanation
Indices: 22631222--22631263 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
22631212 ACTTAAAATA
22631222 TTCTGCAACAACCAAAATATT
1 TTCTGCAACAA-CAAAATATT
22631243 TTCTGCAACTAA-AAAATATT
1 TTCTGCAAC-AACAAAATATT
22631263 T
1 T
22631264 CTGATAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 9 0.45
21 9 0.45
22 2 0.10
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (20 bp):
TTCTGCAACAACAAAATATT
Found at i:22631264 original size:19 final size:19
Alignment explanation
Indices: 22631216--22631266 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
22631206 TCCTCAACTT
22631216 AAAATA-TTCTGCAACAACC
1 AAAATATTTCTGCAACAA-C
22631235 AAAATATTTTCTGCAACTAA-
1 AAAATA-TTTCTGCAAC-AAC
22631255 AAAATATTTCTG
1 AAAATATTTCTG
22631267 ATAAAAGGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
19 12 0.41
20 6 0.21
21 9 0.31
22 2 0.07
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (19 bp):
AAAATATTTCTGCAACAAC
Found at i:22637631 original size:5 final size:5
Alignment explanation
Indices: 22637621--22637656 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
22637611 GGCTGGCTGG
* *
22637621 GTGCA GTGCA GTGCT GTGCT GTGCT GTGCT GTGCT G
1 GTGCT GTGCT GTGCT GTGCT GTGCT GTGCT GTGCT G
22637657 CTAACCCCCC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.06, C:0.19, G:0.42, T:0.33
Consensus pattern (5 bp):
GTGCT
Found at i:22650408 original size:46 final size:46
Alignment explanation
Indices: 22650356--22650496 Score: 273
Period size: 46 Copynumber: 3.1 Consensus size: 46
22650346 ATCTGACAGA
22650356 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
22650402 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
*
22650448 AAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
22650494 AAA
1 AAA
22650497 NNNNNNNNNN
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 94 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
Found at i:22651143 original size:39 final size:39
Alignment explanation
Indices: 22651084--22651184 Score: 157
Period size: 39 Copynumber: 2.6 Consensus size: 39
22651074 ATCGTGATCT
** *
22651084 GAAGCCCGAAATCTAGCTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
22651123 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
22651162 GAAGCCCGGAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
22651185 TCATCAGAAC
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.37, C:0.23, G:0.27, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:22651166 original size:21 final size:21
Alignment explanation
Indices: 22651102--22651166 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 21
22651092 AAATCTAGCT
*
22651102 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAATG
** *
22651123 GAAGC-CCGAAG-GCTAACT-
1 GAAGCACATAAGTGCTAAATG
22651141 GAAGCACATAAGTGCTAAATG
1 GAAGCACATAAGTGCTAAATG
22651162 GAAGC
1 GAAGC
22651167 CCGGAGGCTA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 5 0.15
19 9 0.26
20 10 0.29
21 10 0.29
ACGTcount: A:0.40, C:0.20, G:0.26, T:0.14
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAATG
Found at i:22653611 original size:205 final size:205
Alignment explanation
Indices: 22653259--22653669 Score: 813
Period size: 205 Copynumber: 2.0 Consensus size: 205
22653249 TTTCGAGTTG
22653259 CAGTTACAATAGCATTCTTTAAATGTACACATTGCTCAATTTGATTCATTTAAGCATTATGGTAT
1 CAGTTACAATAGCATTCTTTAAATGTACACATTGCTCAATTTGATTCATTTAAGCATTATGGTAT
22653324 TTGCAATGAAGGTTGGAGTTGTTGCGATGTTGGCTGGGTGGAAGATGTGGGGCCATTTCAAGAAT
66 TTGCAATGAAGGTTGGAGTTGTTGCGATGTTGGCTGGGTGGAAGATGTGGGGCCATTTCAAGAAT
*
22653389 TCCCTAGTATTTTACCTAGTCGAATATCTAGGTTAGAGAACGATTGAGCTTATGATGAGTCCTGA
131 TCCCTAGTATTTTACCTAGTCGAATATCTAGGTTAGAGAACAATTGAGCTTATGATGAGTCCTGA
22653454 ATTGATTGTT
196 ATTGATTGTT
22653464 CAGTTACAATAGCATTCTTTAAATGTACACATTGCTCAATTTGATTCATTTAAGCATTATGGTAT
1 CAGTTACAATAGCATTCTTTAAATGTACACATTGCTCAATTTGATTCATTTAAGCATTATGGTAT
22653529 TTGCAATGAAGGTTGGAGTTGTTGCGATGTTGGCTGGGTGGAAGATGTGGGGCCATTTCAAGAAT
66 TTGCAATGAAGGTTGGAGTTGTTGCGATGTTGGCTGGGTGGAAGATGTGGGGCCATTTCAAGAAT
22653594 TCCCTAGTATTTTACCTAGTCGAATATCTAGGTTAGAGAACAATTGAGCTTATGATGAGTCCTGA
131 TCCCTAGTATTTTACCTAGTCGAATATCTAGGTTAGAGAACAATTGAGCTTATGATGAGTCCTGA
22653659 ATTGATTGTT
196 ATTGATTGTT
22653669 C
1 C
22653670 GGGGCTCGAA
Statistics
Matches: 205, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
205 205 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (205 bp):
CAGTTACAATAGCATTCTTTAAATGTACACATTGCTCAATTTGATTCATTTAAGCATTATGGTAT
TTGCAATGAAGGTTGGAGTTGTTGCGATGTTGGCTGGGTGGAAGATGTGGGGCCATTTCAAGAAT
TCCCTAGTATTTTACCTAGTCGAATATCTAGGTTAGAGAACAATTGAGCTTATGATGAGTCCTGA
ATTGATTGTT
Found at i:22657228 original size:42 final size:42
Alignment explanation
Indices: 22657159--22657244 Score: 136
Period size: 42 Copynumber: 2.0 Consensus size: 42
22657149 ATCGATGTCT
* *
22657159 CATATCGATTCCATGTCCCAGACATGGTCTTACACAAAATCA
1 CATATCGATGCCATATCCCAGACATGGTCTTACACAAAATCA
* *
22657201 CATATCGATGCCATATCCCTGATATGGTCTTACACAAAATCA
1 CATATCGATGCCATATCCCAGACATGGTCTTACACAAAATCA
22657243 CA
1 CA
22657245 CAACCCTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.27
Consensus pattern (42 bp):
CATATCGATGCCATATCCCAGACATGGTCTTACACAAAATCA
Found at i:22658840 original size:46 final size:44
Alignment explanation
Indices: 22658736--22658843 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
22658726 TGTCTTTGAC
** * * *
22658736 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
22658780 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
22658826 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
22658844 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:22662874 original size:20 final size:20
Alignment explanation
Indices: 22662833--22662874 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
22662823 AAAAATAAAG
* * *
22662833 AAATGAAACTATTTTTTTTT
1 AAATAAAACTATTTATTGTT
22662853 AAATAAAACTATTTATTGTT
1 AAATAAAACTATTTATTGTT
22662873 AA
1 AA
22662875 CATATTGCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (20 bp):
AAATAAAACTATTTATTGTT
Found at i:22668948 original size:20 final size:20
Alignment explanation
Indices: 22668923--22668960 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22668913 CAGTCTGGGA
22668923 TTTTATTA-ATTTTCTACTAC
1 TTTTATTATATTTT-TACTAC
22668943 TTTTATTATATTTTTACT
1 TTTTATTATATTTTTACT
22668961 TAAAACTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.24, C:0.11, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTATTATATTTTTACTAC
Found at i:22684922 original size:15 final size:15
Alignment explanation
Indices: 22684902--22684936 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
22684892 ATTAATTTTA
22684902 AAAGGGATAAATCTC
1 AAAGGGATAAATCTC
*
22684917 AAAGGGATAAATTTC
1 AAAGGGATAAATCTC
22684932 AAAGG
1 AAAGG
22684937 TATACATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.49, C:0.09, G:0.23, T:0.20
Consensus pattern (15 bp):
AAAGGGATAAATCTC
Found at i:22684996 original size:29 final size:30
Alignment explanation
Indices: 22684937--22685015 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 30
22684927 ATTTCAAAGG
* *
22684937 TATACATAAATTTTGATTTAATGCGTAATTA
1 TATACATAAACTTTAATTTAATGCG-AATTA
*
22684968 TATACATAAACTTTAATTTGATGC-AATTA
1 TATACATAAACTTTAATTTAATGCGAATTA
* *
22684997 TACATATGAAACTTTAATT
1 TATACAT-AAACTTTAATT
22685016 ATAGTTCAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 10 0.24
30 11 0.26
31 21 0.50
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.43
Consensus pattern (30 bp):
TATACATAAACTTTAATTTAATGCGAATTA
Found at i:22693624 original size:17 final size:18
Alignment explanation
Indices: 22693583--22693625 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
22693573 TGTATTTACT
22693583 TATTATATAAGTAAATAA
1 TATTATATAAGTAAATAA
* *
22693601 TAATATA-AAGTAAATTA
1 TATTATATAAGTAAATAA
22693618 TATTATAT
1 TATTATAT
22693626 TATATAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
TATTATATAAGTAAATAA
Found at i:22693636 original size:18 final size:17
Alignment explanation
Indices: 22693613--22693649 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
22693603 ATATAAAGTA
*
22693613 AATTATATTATATTATAT
1 AATTATAATATATTA-AT
22693631 AATTATAATATATTAAT
1 AATTATAATATATTAAT
22693648 AA
1 AA
22693650 ATGGAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTATAATATATTAAT
Found at i:22695478 original size:8 final size:8
Alignment explanation
Indices: 22695465--22695493 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
22695455 TTATGTTTAG
22695465 TATATTAT
1 TATATTAT
22695473 TATATTAT
1 TATATTAT
22695481 TATATTAT
1 TATATTAT
22695489 TATAT
1 TATAT
22695494 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:22695526 original size:5 final size:5
Alignment explanation
Indices: 22695516--22695551 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
22695506 TTATGTTTTA
22695516 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
22695552 AAACTAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:22696842 original size:15 final size:15
Alignment explanation
Indices: 22696822--22696878 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
22696812 CGATGAATTT
22696822 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
22696837 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
22696852 ATTGAATTTATATTG
1 ATTGAATTTATATTG
22696867 ATTGAA-TTATAT
1 ATTGAATTTATAT
22696879 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:22697281 original size:23 final size:23
Alignment explanation
Indices: 22697251--22697334 Score: 86
Period size: 21 Copynumber: 3.8 Consensus size: 23
22697241 GCTTTATCGA
* *
22697251 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
22697274 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
22697295 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
22697317 T-AGGCACTTTATGTGTCG
1 TCAGGCACCTCATGTGTCG
22697335 GATACTGATC
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
21 34 0.64
22 1 0.02
23 18 0.34
ACGTcount: A:0.14, C:0.23, G:0.26, T:0.37
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:22700755 original size:46 final size:46
Alignment explanation
Indices: 22700688--22701002 Score: 363
Period size: 46 Copynumber: 6.8 Consensus size: 46
22700678 TGTAACCCGC
* * * *
22700688 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
22700734 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTC--GCAT
* *
22700782 CC-T-AGTGAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTG-AACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
22700827 CCATAAGTGAACTCGGACTCCACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* * *
22700877 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
22700920 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATCCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
22700966 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22701003 TGCTCAACCA
Statistics
Matches: 230, Mismatches: 25, Indels: 28
0.81 0.09 0.10
Matches are distributed among these distances:
42 2 0.01
43 3 0.01
44 2 0.01
45 7 0.03
46 140 0.61
47 62 0.27
48 6 0.03
49 2 0.01
50 3 0.01
51 3 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:22700810 original size:93 final size:93
Alignment explanation
Indices: 22700691--22701001 Score: 397
Period size: 93 Copynumber: 3.4 Consensus size: 93
22700681 AACCCGCCCA
* *
22700691 TAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAA
22700756 CTCAACGAGTTCGGATGCTCAACCATCC
66 CTCAACGAGTTCGGATGCTCAACCATCC
*
22700784 T-AGTGAAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCC
1 TAAGTG-AACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCA
22700848 ACTCAACGAGTTCGGATGC-CTAGTTA-CAT-C
65 ACTCAACGAGTTCGGATGCTC-A---ACCATCC
* * * * *
22700878 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAA
22700942 CTCAACGAGTTCGGA--CATC--CGCATCC
66 CTCAACGAGTTCGGATGC-TCAAC-CATCC
* *
22700968 ATAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 -TAAGTGAACTCGGACTCAACTCAACGAGCTCGG
22701002 ATGCTCAACC
Statistics
Matches: 194, Mismatches: 11, Indels: 27
0.84 0.05 0.12
Matches are distributed among these distances:
89 3 0.02
90 1 0.01
91 3 0.02
92 31 0.16
93 148 0.76
94 3 0.02
95 4 0.02
96 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAA
CTCAACGAGTTCGGATGCTCAACCATCC
Found at i:22700938 original size:139 final size:139
Alignment explanation
Indices: 22700742--22701005 Score: 397
Period size: 139 Copynumber: 1.9 Consensus size: 139
22700732 ATCCATAAGT
* *
22700742 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGTGAAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCGCAACCAT-CAAGTGAAACTCGGACTCAACTCA
* * * * *
22700807 ACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCCACTCAACGAGTTCGGATGCCTAGT
65 ACGAGCTCGGACATCCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGT
22700872 TACATCTCAC
130 TACATCTCAC
* *
22700882 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGTG-AACTCGGACTCAACTC
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCGCAACCATCAAGTGAAACTCGGACTCAACTC
*
22700945 AACGAGTTCGGACATCCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGC
64 AACGAGCTCGGACATCCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGC
22701006 TCAACCATCC
Statistics
Matches: 112, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
139 71 0.63
140 32 0.29
142 9 0.08
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (139 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCGCAACCATCAAGTGAAACTCGGACTCAACTCAA
CGAGCTCGGACATCCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT
ACATCTCAC
Found at i:22705566 original size:32 final size:31
Alignment explanation
Indices: 22705525--22705587 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 31
22705515 CTCGAGTTCC
*
22705525 CTACACTGGCTGCCGAAGTAGTCTGGGATTT
1 CTACACTGGCTGCCGAAGTAGTCTCGGATTT
22705556 NCTACACTGGCTGCCGAAGTAGTCTCGGATTT
1 -CTACACTGGCTGCCGAAGTAGTCTCGGATTT
22705588 AGGACCCACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.19, C:0.24, G:0.27, T:0.29
Consensus pattern (31 bp):
CTACACTGGCTGCCGAAGTAGTCTCGGATTT
Found at i:22705709 original size:15 final size:15
Alignment explanation
Indices: 22705689--22705718 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
22705679 TGTGAAAATG
22705689 AACCGCTCATCGGTC
1 AACCGCTCATCGGTC
22705704 AACCGCTCATCGGTC
1 AACCGCTCATCGGTC
22705719 TTTTCTTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.40, G:0.20, T:0.20
Consensus pattern (15 bp):
AACCGCTCATCGGTC
Found at i:22708050 original size:46 final size:46
Alignment explanation
Indices: 22707983--22708248 Score: 410
Period size: 46 Copynumber: 5.8 Consensus size: 46
22707973 TGTAACCCGC
* **
22707983 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCACAT
**
22708029 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCACAT
* *
22708075 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
* *
22708121 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
*
22708167 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
22708213 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
22708249 GACCAAAATA
Statistics
Matches: 212, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
45 2 0.01
46 210 0.99
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACAT
Found at i:22708834 original size:27 final size:27
Alignment explanation
Indices: 22708804--22709162 Score: 159
Period size: 27 Copynumber: 13.3 Consensus size: 27
22708794 GGCAAAATGG
*
22708804 TAATTTTACCCCACAAGGGTATCTCAA
1 TAATTTTACCCTACAAGGGTATCTCAA
* * * **
22708831 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATCTCAA
* **
22708858 T-ATTTCTACCCTACAAGGGTATTTCGG
1 TAATTT-TACCCTACAAGGGTATCTCAA
* * * * * *
22708885 TAATTCTACCTTACATGGGTATTTTAG
1 TAATTTTACCCTACAAGGGTATCTCAA
* * * **
22708912 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATCTCAA
* **
22708939 T-ATTTCTACCCTACAAGGGTATTTCGG
1 TAATTT-TACCCTACAAGGGTATCTCAA
* * * * * *
22708966 TAATTCTACCTTACATGGGTATTTTAG
1 TAATTTTACCCTACAAGGGTATCTCAA
* * * **
22708993 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATCTCAA
** * *
22709020 TAATCCTACCCTAC-AGGGTTATTTCAG
1 TAATTTTACCCTACAAGGG-TATCTCAA
* * * * ***
22709047 TAATTCTACCATACAGGGGTATTTTGG
1 TAATTTTACCCTACAAGGGTATCTCAA
* * * **
22709074 TAATTTTACCCTATAGGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATCTCAA
* * **
22709101 TAATTCTACCCTACAAGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATCTCAA
* *
22709128 TAATTTTACCCTACAAGGGTATTTCGA
1 TAATTTTACCCTACAAGGGTATCTCAA
22709155 T-ATTTTAC
1 TAATTTTAC
22709163 AAATTGATAG
Statistics
Matches: 281, Mismatches: 45, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
26 16 0.06
27 256 0.91
28 9 0.03
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTTTACCCTACAAGGGTATCTCAA
Found at i:22708916 original size:81 final size:81
Alignment explanation
Indices: 22708831--22709151 Score: 518
Period size: 81 Copynumber: 4.0 Consensus size: 81
22708821 GGTATCTCAA
*
22708831 TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCT
22708896 TACATGGGTATTTTAG
66 TACATGGGTATTTTAG
*
22708912 TAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCT
22708977 TACATGGGTATTTTAG
66 TACATGGGTATTTTAG
* *
22708993 TAATTCTACCCTACAGGGGTATTTCGGTAATCCTACCCTAC-AGGGTTATTTCAGTAATTCTACC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGG-TATTTCGGTAATTCTACC
* * *
22709057 ATACAGGGGTATTTTGG
65 TTACATGGGTATTTTAG
* * * *
22709074 TAATTTTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTTTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCT
*
22709139 TACAAGGGTATTT
66 TACATGGGTATTT
22709152 CGATATTTTA
Statistics
Matches: 225, Mismatches: 13, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
80 4 0.02
81 217 0.96
82 4 0.02
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCT
TACATGGGTATTTTAG
Found at i:22709153 original size:54 final size:54
Alignment explanation
Indices: 22708802--22709153 Score: 447
Period size: 54 Copynumber: 6.5 Consensus size: 54
22708792 GAGGCAAAAT
* * **
22708802 GGTAATTTTACCCCACAAGGGTATCTCAATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
22708856 GGT-ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACATGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * *
22708910 AGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * **
22708964 GGTAATTCTACCTTACATGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
** * * *
22709018 GGTAATCCTACCCTAC-AGGGTTATTTCAGTAATTCTACCATACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGG-TATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
22709072 GGTAATTTTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
22709126 GGTAATTTTACCCTACAAGGGTATTTCG
1 GGTAATTTTACCCTACAAGGGTATTTCG
22709154 ATATTTTACA
Statistics
Matches: 257, Mismatches: 37, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
53 7 0.03
54 244 0.95
55 6 0.02
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:22709202 original size:27 final size:27
Alignment explanation
Indices: 22709172--22709350 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
22709162 CAAATTGATA
* * *
22709172 GTATTTTGATAATTTTAGAAATCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* * **
22709199 GTATTTTTGGTATTTTTACAAGCCAACG
1 GTA-TTTTGGTAATTTTACAAACCAGGG
*
22709227 GTATTTTGGTAATTTTATAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* ** *
22709254 GTATTTTAGTAATTTTACTGATC-GAGG
1 GTATTTTGGTAATTTTACAAACCAG-GG
** *
22709281 GTATTTTGGTAATTTTACTGATC-GAGG
1 GTATTTTGGTAATTTTACAAACCAG-GG
** *
22709308 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTACAAACCAGGG
*
22709335 GTATTTTAGTAATTTT
1 GTATTTTGGTAATTTT
22709351 TTAAATCGAG
Statistics
Matches: 124, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 103 0.83
28 20 0.16
ACGTcount: A:0.27, C:0.07, G:0.21, T:0.44
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:22709364 original size:54 final size:54
Alignment explanation
Indices: 22709172--22709362 Score: 178
Period size: 54 Copynumber: 3.5 Consensus size: 54
22709162 CAAATTGATA
* * *
22709172 GTATTTTGATAATTTTAGAAATC-AGGGGTATTTTTGGT-ATTTTTACAAGCCAACG
1 GTATTTTGGTAATTTTATAAATCGAGGGGTA-TTTTGGTAATTTTTA-AA-CCAAGG
* * * * *
22709227 GTATTTTGGTAATTTTATAAA-CCAGGGGTATTTTAGTAA-TTTTACTGATCGAGG
1 GTATTTTGGTAATTTTATAAATCGAGGGGTATTTTGGTAATTTTTA--AACCAAGG
*
22709281 GTATTTTGGTAATTTTACT-GATCGA-GGGTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTA-TAAATCGAGGGGTATTTTGGTAATTTT-TAAACCAAGG
* *
22709335 GTATTTTAGTAATTTTTTAAATCGAGGG
1 GTATTTTGGTAATTTTATAAATCGAGGG
22709363 TAAAACGGTA
Statistics
Matches: 110, Mismatches: 17, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
53 1 0.01
54 71 0.65
55 36 0.33
56 2 0.02
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (54 bp):
GTATTTTGGTAATTTTATAAATCGAGGGGTATTTTGGTAATTTTTAAACCAAGG
Found at i:22709373 original size:81 final size:81
Alignment explanation
Indices: 22709226--22709375 Score: 212
Period size: 81 Copynumber: 1.9 Consensus size: 81
22709216 ACAAGCCAAC
* * ****
22709226 GGTATTTTGGTAATTTTATAAACCAGGGGTATTTTAGTAATTTTACTGATCGAGGGTATTTTGGT
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACTAATCGAGGGTAAAACGGT
22709291 AATTTTACTGATCGAG
66 AATTTTACTGATCGAG
* *
22709307 GGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT-TTAAATCGAGGGTAAAACGG
1 GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACT-AATCGAGGGTAAAACGG
22709371 TAATT
65 TAATT
22709376 CTGTAAGTCG
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 1 0.02
81 59 0.98
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.42
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACTAATCGAGGGTAAAACGGT
AATTTTACTGATCGAG
Found at i:22709869 original size:27 final size:27
Alignment explanation
Indices: 22709343--22709861 Score: 759
Period size: 27 Copynumber: 19.2 Consensus size: 27
22709333 GGGTATTTTA
* * *
22709343 GTAATTTTTTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
22709370 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
22709397 GTAATTCTGTAAATCGAGCGTAACATG
1 GTAATTCTATAAATCGAGGGTAAAATG
22709424 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
22709451 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
22709478 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
22709505 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
22709532 GTAATTCTAAAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
22709559 ATAATTCTGTAAATCGAGGGTAACATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
22709586 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
22709613 GTAATTCTATAAATGGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
22709640 GAAATTCTATAAATCGAGGGCAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
22709667 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
22709694 GTAATTCTATAAATGGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
22709721 GAAATTCTATAAATCGAGGGCAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
22709748 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
22709775 GTAATTCTATAAATGGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
22709802 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
22709829 GTAATTCTGTAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
22709856 GTAATT
1 GTAATT
22709862 TTACAAATTG
Statistics
Matches: 443, Mismatches: 49, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 443 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:22712281 original size:25 final size:25
Alignment explanation
Indices: 22712249--22712368 Score: 168
Period size: 25 Copynumber: 4.8 Consensus size: 25
22712239 CTCTTTTAAT
* * *
22712249 AACTGGGGTAAAACCCTTTTTGATA
1 AACTGGGGCAAAACCCTTTTCGGTA
22712274 AACTGGGGCAAAACCCTTTTCGGTA
1 AACTGGGGCAAAACCCTTTTCGGTA
*
22712299 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAACCCTTTTCGGTA
* *
22712324 AACTGGGGCGAAGCCCTTTTCGGTA
1 AACTGGGGCAAAACCCTTTTCGGTA
* *
22712349 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAACCCTTTT
22712369 AGCACTTCCA
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 88 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAACCCTTTTCGGTA
Found at i:22712601 original size:27 final size:27
Alignment explanation
Indices: 22712571--22712948 Score: 375
Period size: 27 Copynumber: 14.0 Consensus size: 27
22712561 GAGGCAAAAT
* * *
22712571 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
22712598 GGTAATTCTACCTTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
* * *
22712625 GGTATTTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
22712652 GGTAATTCTACCCTACATGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
22712679 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * * *
22712706 GATAATTCTACCTTATAGGGGTATTTA
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
22712733 AATAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
22712760 GGTAATTCTACCTTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
** * * *
22712787 AATAATTCTACCGTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
22712814 GATAATTTTACCCTA-AAGGGGTATTTT
1 GGTAATTCTACCCTACAA-GGGTATTTC
* *
22712841 GGTAATTCTACCCTACATGGTTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
22712868 AGTAATTCTACCCTACACGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
22712895 GATAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
22712922 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
22712949 AATATTTTAC
Statistics
Matches: 290, Mismatches: 55, Indels: 12
0.81 0.15 0.03
Matches are distributed among these distances:
26 7 0.02
27 276 0.95
28 7 0.02
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:22712634 original size:54 final size:54
Alignment explanation
Indices: 22712571--22712948 Score: 414
Period size: 54 Copynumber: 7.0 Consensus size: 54
22712561 GAGGCAAAAT
* * * * *
22712571 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * *
22712625 GGTATTTTTACCCTACAAGGGTATCTCGGTAATTCTACCCTACATGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * * *
22712679 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCTTATAGGGGTATTTA
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
** * * * *
22712733 AATAATTCTACCATACAGGGGTATTTCGGTAATTCTACCTTACAGGGTTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
** * * * * * * *
22712787 AATAATTCTACCGTATAGGGGTATTTCGATAATTTTACCCTAAAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
22712841 GGTAATTCTACCCTACATGGTTATTTCAGTAATTCTACCCTACACGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
22712895 GATAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
22712949 AATATTTTAC
Statistics
Matches: 276, Mismatches: 48, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 276 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:22712706 original size:81 final size:81
Alignment explanation
Indices: 22712573--22712952 Score: 431
Period size: 81 Copynumber: 4.7 Consensus size: 81
22712563 GGCAAAATGG
* * * * ** * *
22712573 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTAC-AGGAGTATTTCGGTATTTTTACC
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGG-GTATTTCAATAATTCTACC
* * *
22712637 CTACAAGGGTATCTCGG
65 CTACAGGGGTATTTCGA
* * * * * *
22712654 TAATTCTACCCTACATGAGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCT
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCC
* **
22712719 TATAGGGGTATTTAAA
66 TACAGGGGTATTTCGA
* * *
22712735 TAATTCTACCATACAGGGGTATTTCGGTAATTCTACCTTAC-AGGGTTATTTCAATAATTCTACC
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGG-TATTTCAATAATTCTACC
* *
22712799 GTATAGGGGTATTTCGA
65 CTACAGGGGTATTTCGA
* * * * *
22712816 TAATTTTACCCTAAAGGGGTATTTTGGTAATTCTACCCTACATGGTTATTTCAGTAATTCTACCC
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCC
*
22712881 TACACGGGTATTTCGA
66 TACAGGGGTATTTCGA
* *
22712897 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCAATA
1 TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATA
22712953 TTTTACAAAT
Statistics
Matches: 253, Mismatches: 43, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
80 4 0.02
81 244 0.96
82 5 0.02
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (81 bp):
TAATTTTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCC
TACAGGGGTATTTCGA
Found at i:22713010 original size:53 final size:55
Alignment explanation
Indices: 22712938--22713089 Score: 136
Period size: 53 Copynumber: 2.9 Consensus size: 55
22712928 TCTACCCTAT
* * * * * *
22712938 AGGGGTATTTCAAT-ATTTTACAAATCGA-GAGTGTTTTGATAATTTCAAAAATC
1 AGGGGTATTTTAGTAATTTTACAAAGCCAGGAGTATTTTGATAATTTCAAAAACC
* * * * * *
22712991 AGGGGTA-TTTGGTATTTTTA-AAAGCCAGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTAGTAATTTTACAAAGCCAGGAGTATTTTGATAATTTCAAAAACC
*
22713044 AGGGGTATTTTAGTAATTTTACAAA-CCAAGG-GTATTTTGGTAATTT
1 AGGGGTATTTTAGTAATTTTACAAAGCC-AGGAGTATTTTGATAATTT
22713090 TACTGATCGA
Statistics
Matches: 80, Mismatches: 14, Indels: 9
0.78 0.14 0.09
Matches are distributed among these distances:
52 8 0.10
53 38 0.47
54 28 0.35
55 6 0.08
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.39
Consensus pattern (55 bp):
AGGGGTATTTTAGTAATTTTACAAAGCCAGGAGTATTTTGATAATTTCAAAAACC
Found at i:22713036 original size:27 final size:27
Alignment explanation
Indices: 22712971--22713142 Score: 170
Period size: 27 Copynumber: 6.4 Consensus size: 27
22712961 ATCGAGAGTG
* * * *
22712971 TTTTGATAATTTCAAAAATCAGGGGTA
1 TTTTGGTAATTTTACAAACCAGGGGTA
*
22712998 -TTTGGTATTTTTA-AAAGCCAGGGGTA
1 TTTTGGTAATTTTACAAA-CCAGGGGTA
22713024 TTTTGGTAATTTTACAAACCAGGGGTA
1 TTTTGGTAATTTTACAAACCAGGGGTA
* *
22713051 TTTTAGTAATTTTACAAACCAAGGGTA
1 TTTTGGTAATTTTACAAACCAGGGGTA
** *
22713078 TTTTGGTAATTTTACTGATC-GAGGGTA
1 TTTTGGTAATTTTACAAACCAG-GGGTA
** **
22713105 TTTTGGTAATTTTGTAAACCAAAGGTA
1 TTTTGGTAATTTTACAAACCAGGGGTA
*
22713132 TTTTAGTAATT
1 TTTTGGTAATT
22713143 CTATAAATCG
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
25 3 0.03
26 18 0.15
27 96 0.80
28 3 0.03
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAACCAGGGGTA
Found at i:22713084 original size:54 final size:54
Alignment explanation
Indices: 22712938--22713156 Score: 185
Period size: 54 Copynumber: 4.1 Consensus size: 54
22712928 TCTACCCTAT
* * * * * * * * *
22712938 AGGGGTATTTCAAT-ATTTTACAAATCGAGAGTGTTTTGATAATTTCAAAAATC
1 AGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
* * * *
22712991 AGGGGTA-TTTGGTATTTTTA-AAAGCCAGGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTAGTAATTTTACAAA-CCAAGGGTATTTTGGTAATTTTACAAATC
**
22713044 AGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACTGATC
1 AGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
* ** * * * *
22713098 -GAGGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTTAGTAATTCTATAAATC
1 AG-GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
22713152 GAGGG
1 -AGGG
22713157 TAAAATAGTA
Statistics
Matches: 131, Mismatches: 28, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
52 6 0.05
53 40 0.31
54 79 0.60
55 5 0.04
56 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (54 bp):
AGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAATC
Found at i:22713165 original size:27 final size:27
Alignment explanation
Indices: 22713137--22713323 Score: 293
Period size: 27 Copynumber: 6.9 Consensus size: 27
22713127 AGGTATTTTA
*
22713137 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
*
22713164 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
22713191 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
22713218 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
22713245 GTAATTCTATAAATTGAGGGTAAACTG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
22713272 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
22713299 GTAATTCTATGAATCGAAGGTAAAA
1 GTAATTCTATAAATCGAGGGTAAAA
22713324 CGATAATTTT
Statistics
Matches: 146, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:22713168 original size:54 final size:54
Alignment explanation
Indices: 22713019--22713323 Score: 173
Period size: 54 Copynumber: 5.6 Consensus size: 54
22713009 TAAAAGCCAG
* * * *** **
22713019 GGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTCTATAAATCGA-GGGTAAAATAGTAATTTTGTAAACCAA
* * *** *
22713073 GGGTATTTTGGTAATTTTACT-GATCGAGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTCTA-TAAATCGAGGGTAAAATAGTAATTTTGTAAACCAA
* * * * *
22713127 AGGTATTTTAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTATTTTGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAACCAA
*** * * * * * *
22713181 GGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAACCAA
**** * * * * * * *
22713235 GGGTAAAACGGTAATTCTATAAATTGAGGGTAAACTGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAACCAA
**** * *
22713289 GGGTAAAACGGTAATTCTATGAATCGAAGGTAAAA
1 GGGTATTTTGGTAATTCTATAAATCGAGGGTAAAA
22713324 CGATAATTTT
Statistics
Matches: 217, Mismatches: 31, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
53 1 0.00
54 214 0.99
55 2 0.01
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (54 bp):
GGGTATTTTGGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAACCAA
Found at i:22713180 original size:81 final size:80
Alignment explanation
Indices: 22713019--22713293 Score: 219
Period size: 81 Copynumber: 3.4 Consensus size: 80
22713009 TAAAAGCCAG
* * * * * * ***
22713019 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTCTATAAATCGAGGGTAAAATGG
*
22713084 TAATT-TTACTGATCGA
66 TAATTCTTA--AATCGA
* * *
22713100 GGGTATTTTGGTAATTTTGTAAACCAAAGGTATTTTAGTAATTCTATAAATCGAGGGTAAAATAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTCTATAAATCGAGGGTAAAATGG
22713165 TAATTCTGTAAATCGA
66 TAATTCT-TAAATCGA
*** * *** *** * *
22713181 GGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTCTATAAATCGAGGGTAAAATGG
*
22713246 TAATTCTATAAATTGA
66 TAATTCT-TAAATCGA
*** * * *
22713262 GGGTAAACTGGTAATTCTATAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTA
22713294 AAACGGTAAT
Statistics
Matches: 160, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
81 157 0.98
82 1 0.01
83 2 0.01
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTCTATAAATCGAGGGTAAAATGG
TAATTCTTAAATCGA
Found at i:22714998 original size:47 final size:47
Alignment explanation
Indices: 22714928--22715023 Score: 140
Period size: 47 Copynumber: 2.0 Consensus size: 47
22714918 CTTACGAAAT
* *
22714928 AAAAAGGAAATTTCTCCTTCTATACATCTCAAACCTGCGACCTTCTA
1 AAAAAGGAAATTTCGCCTGCTATACATCTCAAACCTGCGACCTTCTA
* *
22714975 AAAAAGGAAAATTT-GCCTGCTATACATCTCGAACCTGTGACCTTCTA
1 AAAAAGG-AAATTTCGCCTGCTATACATCTCAAACCTGCGACCTTCTA
22715022 AA
1 AA
22715024 CACACACATA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 38 0.86
48 6 0.14
ACGTcount: A:0.35, C:0.25, G:0.11, T:0.28
Consensus pattern (47 bp):
AAAAAGGAAATTTCGCCTGCTATACATCTCAAACCTGCGACCTTCTA
Found at i:22725044 original size:16 final size:15
Alignment explanation
Indices: 22725023--22725053 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
22725013 CAAAATACCA
22725023 GCTTTTCGGCATTTTG
1 GCTTTTCGGC-TTTTG
22725039 GCTTTTCGGCTTTTG
1 GCTTTTCGGCTTTTG
22725054 CCAATCTAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.03, C:0.19, G:0.26, T:0.52
Consensus pattern (15 bp):
GCTTTTCGGCTTTTG
Found at i:22726608 original size:23 final size:23
Alignment explanation
Indices: 22726536--22726596 Score: 113
Period size: 23 Copynumber: 2.7 Consensus size: 23
22726526 CTCATATGAT
*
22726536 CTTACTGTTTCACCTCTCCTAGG
1 CTTACCGTTTCACCTCTCCTAGG
22726559 CTTACCGTTTCACCTCTCCTAGG
1 CTTACCGTTTCACCTCTCCTAGG
22726582 CTTACCGTTTCACCT
1 CTTACCGTTTCACCT
22726597 TTACAGAGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.13, C:0.38, G:0.11, T:0.38
Consensus pattern (23 bp):
CTTACCGTTTCACCTCTCCTAGG
Found at i:22726637 original size:22 final size:23
Alignment explanation
Indices: 22726536--22726636 Score: 93
Period size: 23 Copynumber: 4.4 Consensus size: 23
22726526 CTCATATGAT
* *
22726536 CTTACTGTTTCACCTCTCCTAG-G
1 CTTACCGTTTCACCTCTTC-AGAG
*
22726559 CTTACCGTTTCACCTCTCCTAG-G
1 CTTACCGTTTCACCTCTTC-AGAG
22726582 CTTACCGTTTCACCT-TTACAGAG
1 CTTACCGTTTCACCTCTT-CAGAG
** *
22726605 CTTATTGTTT-AGCTCTTCAGAG
1 CTTACCGTTTCACCTCTTCAGAG
22726627 CTTACCGTTT
1 CTTACCGTTT
22726637 ATTATCTCAG
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
22 19 0.28
23 49 0.72
ACGTcount: A:0.16, C:0.31, G:0.14, T:0.40
Consensus pattern (23 bp):
CTTACCGTTTCACCTCTTCAGAG
Found at i:22726848 original size:9 final size:9
Alignment explanation
Indices: 22726834--22726858 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
22726824 AAATTATAAG
22726834 TTACATGAA
1 TTACATGAA
22726843 TTACATGAA
1 TTACATGAA
22726852 TTACATG
1 TTACATG
22726859 GATTTTCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (9 bp):
TTACATGAA
Found at i:22729042 original size:27 final size:27
Alignment explanation
Indices: 22729012--22729077 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
22729002 GCAAAGCTGT
*
22729012 CAGTAACAGTAAATGTGGCAAAGCCAC
1 CAGTAATAGTAAATGTGGCAAAGCCAC
* * *
22729039 CAGTATTAGCATATGTGGCAAAGCCAC
1 CAGTAATAGTAAATGTGGCAAAGCCAC
22729066 CAGTAATAGTAA
1 CAGTAATAGTAA
22729078 TTACGTGGCA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (27 bp):
CAGTAATAGTAAATGTGGCAAAGCCAC
Found at i:22731611 original size:27 final size:27
Alignment explanation
Indices: 22731570--22731623 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
22731560 TGTCATGTGA
* *
22731570 AATTGAATGACAAATTATTGTTACATG
1 AATTGAATGACAAATTACTATTACATG
**
22731597 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGACAAATTACTATTACATG
22731624 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGACAAATTACTATTACATG
Found at i:22731948 original size:49 final size:49
Alignment explanation
Indices: 22731876--22732167 Score: 374
Period size: 49 Copynumber: 5.9 Consensus size: 49
22731866 TCTATTGTGA
* *
22731876 GGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
22731925 GGTCACATGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* ** *
22731974 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCTGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* ** * * *
22732024 CGATCAGGTGTGTAGTAATAAGTGCAGGCTAGTA-GTGTATCAGA-AGATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA-ATT
*
22732073 AGGTCACGTGTGTAGTACT-AGTGCAGGCTACTACGTGTACCAGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
22732122 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
22732168 GCCTTGGCTA
Statistics
Matches: 210, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
48 29 0.14
49 143 0.68
50 10 0.05
51 28 0.13
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:22732151 original size:148 final size:149
Alignment explanation
Indices: 22731882--22732167 Score: 452
Period size: 148 Copynumber: 1.9 Consensus size: 149
22731872 GTGAGGTCAC
* *
22731882 GTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCACATGTTTAGTACTAAGT
1 GTGTGTAGTAATAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
22731947 GCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCAT
66 GCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCAT
*
22732012 ACCTGATAACTTCGATCAG
131 ACCAGATAACTTCGATCAG
* * * *
22732031 GTGTGTAGTAATAAGTGCAGGCTAGTA-GTGTATCAGA-AGATTAGGTCACGTGTGTAGTACT-A
1 GTGTGTAGTAATAAGTGCAAGCTACTACGTGTACCAGATA-ATT-GGTCACATGTGTAGTACTAA
*
22732093 GTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC
64 GTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGC
*
22732158 GTACCAGATA
129 ATACCAGATA
22732168 GCCTTGGCTA
Statistics
Matches: 126, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
147 1 0.01
148 85 0.67
149 40 0.32
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (149 bp):
GTGTGTAGTAATAAGTGCAAGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCAT
ACCAGATAACTTCGATCAG
Found at i:22735284 original size:15 final size:15
Alignment explanation
Indices: 22735257--22735314 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 15
22735247 GTATCGTATC
*
22735257 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
*
22735272 TTGGATTTTTTTATT
1 TTGGATTTCTTTATT
* * * *
22735287 CTGGGTTTCTCTATC
1 TTGGATTTCTTTATT
22735302 TTGGATTTCTTTA
1 TTGGATTTCTTTA
22735315 CTCGGTTTTC
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.10, C:0.10, G:0.17, T:0.62
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:22735294 original size:30 final size:30
Alignment explanation
Indices: 22735258--22735314 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
22735248 TATCGTATCT
* * *
22735258 TGGGTTTCTTTATTTTGGATTTTTTTATTC
1 TGGGTTTCTCTATCTTGGATTTCTTTATTC
22735288 TGGGTTTCTCTATCTTGGATTTCTTTA
1 TGGGTTTCTCTATCTTGGATTTCTTTA
22735315 CTCGGTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.11, C:0.11, G:0.18, T:0.61
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGGATTTCTTTATTC
Found at i:22737673 original size:43 final size:43
Alignment explanation
Indices: 22737626--22737764 Score: 158
Period size: 42 Copynumber: 3.2 Consensus size: 43
22737616 GTCCCGGACG
*
22737626 TGGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGATA
1 TGGTCTTACATGTAATTCAATATCGATGCCTATGTCCCAGATA
* *
22737669 TGGTCTTACATG-AAATCAGATAT-GATGCCGATGTCCCAGATA
1 TGGTCTTACATGTAATTCA-ATATCGATGCCTATGTCCCAGATA
* * * *
22737711 TGGTCTTACACGTAAATCTCAA-ATCGAAGCCTGTGTCCCAGACA
1 TGGTCTTACATGT-AAT-TCAATATCGATGCCTATGTCCCAGATA
*
22737755 CGGTCTTACA
1 TGGTCTTACA
22737765 CGATATCTCA
Statistics
Matches: 81, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
42 33 0.41
43 18 0.22
44 27 0.33
45 3 0.04
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (43 bp):
TGGTCTTACATGTAATTCAATATCGATGCCTATGTCCCAGATA
Found at i:22737706 original size:42 final size:43
Alignment explanation
Indices: 22737608--22737764 Score: 151
Period size: 42 Copynumber: 3.7 Consensus size: 43
22737598 ACCAATTACA
* * ** *
22737608 ATGCCGACGTCCCGGACGTGGTCTTACATGTAATTCAATATCG
1 ATGCCGATGTCCCAGATATGGTCTTACATGTAAATCAATATCG
**
22737651 ATGCCTCTGTCCCAGATATGGTCTTACATG-AAATCAGATAT-G
1 ATGCCGATGTCCCAGATATGGTCTTACATGTAAATCA-ATATCG
*
22737693 ATGCCGATGTCCCAGATATGGTCTTACACGTAAATCTCAA-ATCG
1 ATGCCGATGTCCCAGATATGGTCTTACATGTAAA--TCAATATCG
* * *
22737737 AAGCCTG-TGTCCCAGACACGGTCTTACA
1 ATGCC-GATGTCCCAGATATGGTCTTACA
22737765 CGATATCTCA
Statistics
Matches: 95, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 33 0.35
43 33 0.35
44 25 0.26
45 4 0.04
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (43 bp):
ATGCCGATGTCCCAGATATGGTCTTACATGTAAATCAATATCG
Found at i:22737763 original size:86 final size:85
Alignment explanation
Indices: 22737608--22737764 Score: 208
Period size: 86 Copynumber: 1.8 Consensus size: 85
22737598 ACCAATTACA
* * * * * *
22737608 ATGCCGACGTCCCGGACGTGGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGATATGGT
1 ATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAATATCGAAGCCTCTGTCCCAGACACGGT
22737673 CTTACATGAAATCAGATATG
66 CTTACATGAAATCAGATATG
* * *
22737693 ATGCCGATGTCCCAGATATGGTCTTACACGTAAATCTCAA-ATCGAAGCCTGTGTCCCAGACACG
1 ATGCCGACGTCCCAGACATGGTCTTACACGT-AAT-TCAATATCGAAGCCTCTGTCCCAGACACG
22737757 GTCTTACA
64 GTCTTACA
22737765 CGATATCTCA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 26 0.43
86 31 0.51
87 4 0.07
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (85 bp):
ATGCCGACGTCCCAGACATGGTCTTACACGTAATTCAATATCGAAGCCTCTGTCCCAGACACGGT
CTTACATGAAATCAGATATG
Found at i:22745139 original size:47 final size:47
Alignment explanation
Indices: 22745067--22745282 Score: 301
Period size: 47 Copynumber: 4.6 Consensus size: 47
22745057 CCCTTTGGGA
* * *
22745067 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
22745114 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
22745161 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
22745208 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
22745255 CTTATCACGCATATATATACTTTCACAT
1 CTTATCA--CATATATACACTTTCACAT
22745283 CAATTTCATC
Statistics
Matches: 151, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
46 1 0.01
47 135 0.89
49 14 0.09
50 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:22749525 original size:24 final size:24
Alignment explanation
Indices: 22749494--22749539 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
22749484 AGGAAGTGAA
**
22749494 AAAGGGCTTTGCCTC-AGTTATTT
1 AAAGGGCTAGGCCTCTAGTTATTT
22749517 AAAGAGGCTAGGCCTCTAGTTAT
1 AAAG-GGCTAGGCCTCTAGTTAT
22749540 ATGATAAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 9 0.47
25 6 0.32
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (24 bp):
AAAGGGCTAGGCCTCTAGTTATTT
Found at i:22758457 original size:45 final size:45
Alignment explanation
Indices: 22758394--22758526 Score: 185
Period size: 45 Copynumber: 3.0 Consensus size: 45
22758384 GCCCGATATC
* * *
22758394 ATTTCACCAGCATTATAGCCTGCTAGGCTTGAAGGCCCGAATAGT
1 ATTTCACCGGCATCATAGCCTGCTAGGCTTAAAGGCCCGAATAGT
* * *
22758439 ATTTCACCGGCATCATAGCCTGCTAGGCTCAAGGGTCCGAATAGT
1 ATTTCACCGGCATCATAGCCTGCTAGGCTTAAAGGCCCGAATAGT
* * *
22758484 ATTTCACCGGCATCAAAGCCTGCTAGGCTCAAAGGCCTGAATA
1 ATTTCACCGGCATCATAGCCTGCTAGGCTTAAAGGCCCGAATA
22758527 TTACTGTACG
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 78 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (45 bp):
ATTTCACCGGCATCATAGCCTGCTAGGCTTAAAGGCCCGAATAGT
Found at i:22763251 original size:42 final size:43
Alignment explanation
Indices: 22763162--22763255 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 43
22763152 TCCCGAACGT
* ** * *
22763162 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGATAT
1 GGTCTTACATGTAAATCAATATCGATGCCGATGTCCCAGACAC
22763205 GGTCTTACATG-AAATCAAATAT-GATGCCGATGTCCCAGACAC
1 GGTCTTACATGTAAATC-AATATCGATGCCGATGTCCCAGACAC
22763247 GGTCTTACA
1 GGTCTTACA
22763256 CGATATCTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 29 0.64
43 16 0.36
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAATATCGATGCCGATGTCCCAGACAC
Found at i:22764056 original size:6 final size:6
Alignment explanation
Indices: 22764041--22764150 Score: 82
Period size: 6 Copynumber: 17.8 Consensus size: 6
22764031 CATTGCAATG
* *
22764041 AGAATC AGAATT AGAATC AGAATC AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * * * *
22764090 AGAATC AGAATT AG-GTGAC AAAATC AGAATC AGTATC AGGTAAT- AGAATT
1 AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC A-G-AATC AGAATC
22764140 AGAATC AGAAT
1 AGAATC AGAAT
22764151 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 13, Indels: 18
0.73 0.12 0.16
Matches are distributed among these distances:
5 5 0.06
6 67 0.82
7 6 0.07
8 4 0.05
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:22764083 original size:37 final size:37
Alignment explanation
Indices: 22764041--22764128 Score: 140
Period size: 37 Copynumber: 2.4 Consensus size: 37
22764031 CATTGCAATG
* *
22764041 AGAATCAGAATTAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTGACAAAATC
*
22764078 AGAATCAGAATCAGAATCAGAATTAGGTGACAAAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTGACAAAATC
*
22764115 AGAATCAGTATCAG
1 AGAATCAGAATCAG
22764129 GTAATAGAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGGTGACAAAATC
Found at i:22764114 original size:25 final size:25
Alignment explanation
Indices: 22764086--22764150 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
22764076 TCAGAATCAG
* *
22764086 AATCAGAATCAGAATTAGGTGACAA
1 AATCAGAATCAGAATCAGGTAACAA
* * *
22764111 AATCAGAATCAGTATCAGGTAATAG
1 AATCAGAATCAGAATCAGGTAACAA
*
22764136 AATTAGAATCAGAAT
1 AATCAGAATCAGAAT
22764151 GTGAATGCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.48, C:0.11, G:0.18, T:0.23
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAA
Found at i:22764146 original size:31 final size:31
Alignment explanation
Indices: 22764041--22764150 Score: 109
Period size: 31 Copynumber: 3.5 Consensus size: 31
22764031 CATTGCAATG
* * *
22764041 AGAATCAGAATTAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAT
22764072 AGAATCAGAATCAGAATCAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-T
* * *
22764102 AG-GTGACAAAATCAGAATCAGTATCAGGTAAT
1 AGAAT--CAGAATCAGAATCAGAATCAGGTAAT
*
22764134 AGAATTAGAATCAGAAT
1 AGAATCAGAATCAGAAT
22764151 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
29 2 0.03
30 3 0.05
31 52 0.81
32 4 0.06
33 3 0.05
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAT
Found at i:22764365 original size:27 final size:26
Alignment explanation
Indices: 22764268--22764375 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 26
22764258 AGCATGGCTT
* *
22764268 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAATAGATATTGTGGCAGAGCCA
*
22764294 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ATAGATATTGTGGCAGAGCCA
* * *
22764321 CCAAAATAGATTTTTGTGGCATAGCCA
1 CCAGAATAGA-TATTGTGGCAGAGCCA
* *
22764348 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAAT-AGATATTGTGGCAGAGCCA
22764375 C
1 C
22764376 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 9 0.13
27 56 0.82
28 3 0.04
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.21
Consensus pattern (26 bp):
CCAGAATAGATATTGTGGCAGAGCCA
Found at i:22764635 original size:20 final size:20
Alignment explanation
Indices: 22764607--22764647 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
22764597 CGGGTCTATA
*
22764607 ATCGGTACGAAGCCCACAAT
1 ATCGATACGAAGCCCACAAT
22764627 ATCGATACGAAGCCCACAAT
1 ATCGATACGAAGCCCACAAT
22764647 A
1 A
22764648 ACGGCACAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.29, G:0.17, T:0.15
Consensus pattern (20 bp):
ATCGATACGAAGCCCACAAT
Found at i:22765081 original size:81 final size:81
Alignment explanation
Indices: 22764951--22765159 Score: 274
Period size: 81 Copynumber: 2.6 Consensus size: 81
22764941 ATTTTACCCC
* * ** *
22764951 ACAAGGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATT
*
22765016 TCAGTAATTCTATCGT
66 TCAGTAATTCTACCGT
* * * * *
22765032 ACAAAGGTATTTCAGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAGGGGTGTT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATT
* * *
22765097 TCGGTATTTCTACCTT
66 TCAGTAATTCTACCGT
* *
22765113 ACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAATAATT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATT
22765160 TTGTAAATTG
Statistics
Matches: 109, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 109 1.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (81 bp):
ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATT
TCAGTAATTCTACCGT
Found at i:22765152 original size:27 final size:27
Alignment explanation
Indices: 22764937--22765151 Score: 241
Period size: 27 Copynumber: 8.0 Consensus size: 27
22764927 GGGGCAAAAT
* * *
22764937 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
22764964 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
22764991 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
22765018 AGTAATTCTATCGTACAAAGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
22765045 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
22765072 AGTAATTCTACCCTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
22765099 GGTATTTCTACCTTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
22765126 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
22765152 TAATAATTTT
Statistics
Matches: 157, Mismatches: 31, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 157 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:22765228 original size:27 final size:27
Alignment explanation
Indices: 22765198--22765407 Score: 221
Period size: 27 Copynumber: 7.8 Consensus size: 27
22765188 TGTAAATTGG
*
22765198 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCGGTAATTTTACAAATCGA
* *
22765225 GGGTATTTCAGTAATTTTATAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
22765252 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTTCGGTAATTTTACAAATC-GA
22765279 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
**
22765306 GGGTATTTTAGTAATTTTAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * *
22765332 CGATATTTTGGTAATTTTATAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * * *
22765359 AGGTATTTGGGTAATTTTATAAACCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
22765386 GGGTACTTT-GGTAATTTTACAA
1 GGGTA-TTTCGGTAATTTTACAA
22765408 CTGGGGGTAT
Statistics
Matches: 158, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
26 26 0.16
27 128 0.81
28 4 0.03
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:22765229 original size:81 final size:81
Alignment explanation
Indices: 22765144--22765324 Score: 222
Period size: 81 Copynumber: 2.2 Consensus size: 81
22765134 TACCCTACAG
* * * * * * *
22765144 GGGTATTTTAATAATTTTGTAAATTGAGGGTAAAATGA-TAATTCTGTAAATTGGGGGTACTTT-
1 GGGTATTTTAGTAATTTTATAAATCGAGGGT-AAATCAGTAATTCTGCAAACTGAGGGTA-TTTC
*
22765207 GGTAATTTTACAAGTCGA
64 GGTAATTTTACAAATCGA
* ** *
22765225 GGGTATTTCAGTAATTTTATAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTCGG
1 GGGTATTTTAGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGCAAACTGAGGGTATTTCGG
22765290 TAATTTTACAAATCGA
66 TAATTTTACAAATCGA
22765306 GGGTATTTTAGTAATTTTA
1 GGGTATTTTAGTAATTTTA
22765325 CAATCGACGA
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 6 0.07
81 79 0.93
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTTATAAATCGAGGGTAAATCAGTAATTCTGCAAACTGAGGGTATTTCGG
TAATTTTACAAATCGA
Found at i:22765426 original size:80 final size:80
Alignment explanation
Indices: 22765199--22765428 Score: 234
Period size: 80 Copynumber: 2.9 Consensus size: 80
22765189 GTAAATTGGG
** * *
22765199 GGTACTTT-GGTAATTTTACAAGTCGAGGGTA-TTTCAGTAATTTTATAAATCGAGGGTATTTCA
1 GGTA-TTTCGGTAATTTTACAAACCGAGGGTACTTT-AGTAATTTTA-CAATCGAGGGTATTTTA
* *
22765262 GTAATTTTGCAAACTGAG
63 GTAATTTTACAAACTGAA
* * * * *
22765280 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTACAATCGACGATATTTTGGTA
1 GGTATTTCGGTAATTTTACAAACCGAGGGTACTTTAGTAATTTTACAATCGAGGGTATTTTAGTA
*
22765345 ATTTTATAAA-TCGAA
66 ATTTTACAAACT-GAA
* * * * *
22765360 GGTATTTGGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAA-CTGGGGGTATTTTAGT
1 GGTATTTCGGTAATTTTACAAACCGAGGGTACTTTAGTAATTTTACAATC-GAGGGTATTTTAGT
22765424 AATTT
65 AATTT
22765429 AGTAAACTAA
Statistics
Matches: 126, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
79 2 0.02
80 85 0.67
81 36 0.29
82 3 0.02
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (80 bp):
GGTATTTCGGTAATTTTACAAACCGAGGGTACTTTAGTAATTTTACAATCGAGGGTATTTTAGTA
ATTTTACAAACTGAA
Found at i:22765435 original size:53 final size:52
Alignment explanation
Indices: 22765222--22765435 Score: 200
Period size: 54 Copynumber: 4.0 Consensus size: 52
22765212 TTTTACAAGT
* * *
22765222 CGAGGGTATTTCAGTAATTTTATAAATCGAGGGTATTTCAGTAATTT-TGCAAAC
1 CGAGGGTATTT-GGTAATTTTACAAATCGAGGGTATTTTAGTAATTTAT--AAAC
* *
22765276 TGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTT-TACAAT
1 CGAGGGTATTT-GGTAATTTTACAAATCGAGGGTATTTTAGTAATTTATA-AAC
* * * * **
22765329 CGACGATATTTTGGTAATTTTATAAATCGAAGGTATTTGGGTAATTTTATAAAC
1 CGAGGGTA-TTTGGTAATTTTACAAATCGAGGGTATTTTAGTAA-TTTATAAAC
* * *
22765383 CGGGGGTACTTTGGTAATTTTACAACT-GGGGGTATTTTAGTAATTTAGTAAAC
1 CGAGGGTA-TTTGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTA-TAAAC
22765436 TAAAGTATTC
Statistics
Matches: 132, Mismatches: 23, Indels: 11
0.80 0.14 0.07
Matches are distributed among these distances:
52 5 0.04
53 52 0.39
54 73 0.55
55 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (52 bp):
CGAGGGTATTTGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTATAAAC
Found at i:22765436 original size:27 final size:26
Alignment explanation
Indices: 22765190--22765436 Score: 96
Period size: 27 Copynumber: 9.2 Consensus size: 26
22765180 GATAATTCTG
* *
22765190 TAAATTGGGGGTACTTTGGTAATTT-
1 TAAACTGGGGGTATTTTGGTAATTTA
* * **
22765215 TACAAGTCGAGGGTATTTCAGTAATTTTA
1 TA-AACT-GGGGGTATTTTGGTAA-TTTA
* **
22765244 TAAA-TCGAGGGTATTTCAGTAATTT-
1 TAAACT-GGGGGTATTTTGGTAATTTA
* *
22765269 TGCAAACTGAGGGTATTTCGGTAATTT-
1 T--AAACTGGGGGTATTTTGGTAATTTA
* * *
22765296 TACAAATCGAGGGTATTTTAGTAATTT-
1 TA-AACT-GGGGGTATTTTGGTAATTTA
** *
22765323 TACAA-TCGACGATATTTTGGTAATTTTA
1 TA-AACT-GGGGGTATTTTGGTAA-TTTA
** *
22765351 TAAA-TCGAAGGTATTTGGGTAATTTTA
1 TAAACT-GGGGGTATTTTGGTAA-TTTA
* *
22765378 TAAACCGGGGGTACTTTGGTAATTT-
1 TAAACTGGGGGTATTTTGGTAATTTA
*
22765403 TACAACTGGGGGTATTTTAGTAATTTA
1 TA-AACTGGGGGTATTTTGGTAATTTA
22765430 GTAAACT
1 -TAAACT
22765437 AAAGTATTCT
Statistics
Matches: 184, Mismatches: 23, Indels: 28
0.78 0.10 0.12
Matches are distributed among these distances:
25 6 0.03
26 47 0.26
27 119 0.65
28 10 0.05
29 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
TAAACTGGGGGTATTTTGGTAATTTA
Found at i:22769074 original size:49 final size:49
Alignment explanation
Indices: 22769001--22769273 Score: 339
Period size: 49 Copynumber: 5.5 Consensus size: 49
22768991 TGAGGTCACG
*
22769001 TGTGTAGTACTAAGTGCAGACTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
* * *** * *
22769050 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACGGTTAGGTCACC
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCA
* * *
22769100 TGTGTAGTACTAAGTGCAGGCTATTACATGTACCGAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
* * *** * *
22769149 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACGGTTAGGTCACC
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCA
* * *
22769199 TGTGTAGTACTAAGTGCAGGCTATTACATGTACCGAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
22769248 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
22769274 TGCACACCAG
Statistics
Matches: 183, Mismatches: 39, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
49 105 0.57
50 78 0.43
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:22769164 original size:99 final size:99
Alignment explanation
Indices: 22768993--22769273 Score: 517
Period size: 99 Copynumber: 2.8 Consensus size: 99
22768983 ATCTATTGTG
* * * * *
22768993 AGGTCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACCTGTGTAGTACTAAGTGCAGGCTATTACATGTACCGAATAATTGGTCGCATGTGTAGT
22769058 ACTAAGTGCAGGCTACTACGTGTATCAGACGGTT
66 ACTAAGTGCAGGCTACTACGTGTATCAGACGGTT
22769092 AGGTCACCTGTGTAGTACTAAGTGCAGGCTATTACATGTACCGAATAATTGGTCGCATGTGTAGT
1 AGGTCACCTGTGTAGTACTAAGTGCAGGCTATTACATGTACCGAATAATTGGTCGCATGTGTAGT
22769157 ACTAAGTGCAGGCTACTACGTGTATCAGACGGTT
66 ACTAAGTGCAGGCTACTACGTGTATCAGACGGTT
22769191 AGGTCACCTGTGTAGTACTAAGTGCAGGCTATTACATGTACCGAATAATTGGTCGCATGTGTAGT
1 AGGTCACCTGTGTAGTACTAAGTGCAGGCTATTACATGTACCGAATAATTGGTCGCATGTGTAGT
22769256 ACTAAGTGCAGGCTACTA
66 ACTAAGTGCAGGCTACTA
22769274 TGCACACCAG
Statistics
Matches: 177, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
99 177 1.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (99 bp):
AGGTCACCTGTGTAGTACTAAGTGCAGGCTATTACATGTACCGAATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTACGTGTATCAGACGGTT
Found at i:22773705 original size:27 final size:25
Alignment explanation
Indices: 22773675--22773757 Score: 60
Period size: 27 Copynumber: 3.1 Consensus size: 25
22773665 ACACATATAT
22773675 ATATACCGCACATAGGGCAAAACAGTC
1 ATATACC-CA-ATAGGGCAAAACAGTC
* *
22773702 ATATTA-CCATATAAAGGCAAAACAATC
1 ATA-TACCCA-AT-AGGGCAAAACAGTC
* *
22773729 ATTTTACCTCAAAAGGGCAAAACAGTC
1 A-TATACC-CAATAGGGCAAAACAGTC
22773756 AT
1 AT
22773758 TTTACTACGT
Statistics
Matches: 44, Mismatches: 7, Indels: 11
0.71 0.11 0.18
Matches are distributed among these distances:
26 5 0.11
27 32 0.73
28 5 0.11
29 2 0.05
ACGTcount: A:0.45, C:0.22, G:0.13, T:0.20
Consensus pattern (25 bp):
ATATACCCAATAGGGCAAAACAGTC
Found at i:22773758 original size:27 final size:27
Alignment explanation
Indices: 22773688--22773842 Score: 147
Period size: 27 Copynumber: 5.7 Consensus size: 27
22773678 TACCGCACAT
*
22773688 AGGGCAAAACAGTCATATTACCAT-ATAA
1 AGGGCAAAACAGTCATTTTACC-TCA-AA
*
22773716 A-GGCAAAACAATCATTTTACCTCAAA
1 AGGGCAAAACAGTCATTTTACCTCAAA
**
22773742 AGGGCAAAACAGTCATTTTA-CTACGTA
1 AGGGCAAAACAGTCATTTTACCT-CAAA
* * * *
22773769 TGGGCAAATCAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCTCAAA
* * *
22773796 AGGGAAAAATAGTCATTTTACCACATAA
1 AGGGCAAAACAGTCATTTTACCTCA-AA
22773824 A-GGCAAAACAGTCATTTTA
1 AGGGCAAAACAGTCATTTTA
22773843 TCGACCTAAC
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.06
27 96 0.91
28 4 0.04
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (27 bp):
AGGGCAAAACAGTCATTTTACCTCAAA
Found at i:22773775 original size:54 final size:54
Alignment explanation
Indices: 22773688--22773842 Score: 202
Period size: 54 Copynumber: 2.9 Consensus size: 54
22773678 TACCGCACAT
* * * *
22773688 AGGGCAAAACAGTCATATTACCATATAAAGGCAAAACAATCATTTTACCTCAAA
1 AGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAGTCATTTTACCACAAA
* * ** * *
22773742 AGGGCAAAACAGTCATTTTACTACGTATGGGCAAATCAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAGTCATTTTACCACAAA
* *
22773796 AGGGAAAAATAGTCATTTTACCACATAAAGGCAAAACAGTCATTTTA
1 AGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAGTCATTTTA
22773843 TCGACCTAAC
Statistics
Matches: 84, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 84 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (54 bp):
AGGGCAAAACAGTCATTTTACCACATAAAGGCAAAACAGTCATTTTACCACAAA
Found at i:22773829 original size:81 final size:81
Alignment explanation
Indices: 22773689--22773842 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
22773679 ACCGCACATA
* * *
22773689 GGGCAAAACAGTCATATTACCATATAAAGGCAAAACAATCATTTTACCTCAAAAGGGCAAAACAG
1 GGGCAAAACAGTCATATTACCACATAAAGGAAAAACAATCATTTTACCACAAAAGGGCAAAACAG
22773754 TCATTTTACTACGTAT
66 TCATTTTACTACGTAT
* * * * *
22773770 GGGCAAATCAGTCATTTTACCACATAAGGGAAAAATAGTCATTTTACCACATAAA-GGCAAAACA
1 GGGCAAAACAGTCATATTACCACATAAAGGAAAAACAATCATTTTACCACA-AAAGGGCAAAACA
22773834 GTCATTTTA
65 GTCATTTTA
22773843 TCGACCTAAC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
81 61 0.95
82 3 0.05
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (81 bp):
GGGCAAAACAGTCATATTACCACATAAAGGAAAAACAATCATTTTACCACAAAAGGGCAAAACAG
TCATTTTACTACGTAT
Found at i:22791770 original size:102 final size:102
Alignment explanation
Indices: 22791594--22791796 Score: 388
Period size: 102 Copynumber: 2.0 Consensus size: 102
22791584 CGGCCATGAA
22791594 AAGTATGGTAGACCAAGTGTGATGGGCAAGAACATGTCATAAACATGTTAAGTTAGTGTTTCATG
1 AAGTATGGTAGACCAAGTGTGATGGGCAAGAACATGTCATAAACATGTTAAGTTAGTGTTTCATG
22791659 GGAAGTATGATAAAATAAGGAGCATGGGATACAAAAC
66 GGAAGTATGATAAAATAAGGAGCATGGGATACAAAAC
* *
22791696 AAGTATGGTAGACCAAGTGTGATGGGCAAGACCATGTCATAAACTTGTTAAGTTAGTGTTTCATG
1 AAGTATGGTAGACCAAGTGTGATGGGCAAGAACATGTCATAAACATGTTAAGTTAGTGTTTCATG
22791761 GGAAGTATGATAAAATAAGGAGCATGGGATACAAAA
66 GGAAGTATGATAAAATAAGGAGCATGGGATACAAAA
22791797 TATATGCCTT
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 99 1.00
ACGTcount: A:0.38, C:0.10, G:0.27, T:0.25
Consensus pattern (102 bp):
AAGTATGGTAGACCAAGTGTGATGGGCAAGAACATGTCATAAACATGTTAAGTTAGTGTTTCATG
GGAAGTATGATAAAATAAGGAGCATGGGATACAAAAC
Found at i:22795206 original size:87 final size:89
Alignment explanation
Indices: 22795025--22795208 Score: 236
Period size: 87 Copynumber: 2.1 Consensus size: 89
22795015 NNNNNNNNAG
* * *
22795025 ATCGAAGACGTAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGG
* *
22795090 CATTCTTGTGTTTACAAGGAGCAA
66 CATTCTTGTATTTACAAGGAACAA
*
22795114 ATCGAAGACATAGCAGATCTGACCTTCAGG-TGTTTACAC-T-GAAGTAGATCCAAGATGATTTG
1 ATCGAAGACATAGCAGATCTGACCTT-AGGATGTTTACACATCGAAGCAGATCCAAGATGATTTG
22795176 GCA-TCTCTGTATTGT-C-AGAGAACAA
65 GCATTCT-TGTATT-TACAAG-GAACAA
22795201 ATCGAAGA
1 ATCGAAGA
22795209 AACAGATTTG
Statistics
Matches: 85, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
86 5 0.06
87 43 0.51
88 2 0.02
89 33 0.39
90 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (89 bp):
ATCGAAGACATAGCAGATCTGACCTTAGGATGTTTACACATCGAAGCAGATCCAAGATGATTTGG
CATTCTTGTATTTACAAGGAACAA
Found at i:22795410 original size:87 final size:87
Alignment explanation
Indices: 22795293--22795571 Score: 402
Period size: 87 Copynumber: 3.2 Consensus size: 87
22795283 CATTGAAGCA
*
22795293 GATCCGAA-ATGATTTGGCATTACTGTGTTTACAAGAAGCAAATCGAAGACATAGTAGATCTGAC
1 GATCC-AAGATGATTTGGCATTACTGTGTTTACAAGAAGCAAATCGAAGACATAGCAGATCTGAC
22795357 CTTTATTTGTTTACTCAGAATTT
65 CTTTATTTGTTTACTCAGAATTT
* *
22795380 GATCCAAGATGATTTGGCATT-CTTGTGTTTACAAGGAGCAAATTGAAGACATAGCAGATCTGAC
1 GATCCAAGATGATTTGGCATTAC-TGTGTTTACAAGAAGCAAATCGAAGACATAGCAGATCTGAC
**** **
22795444 CTTTGGACGATTTCACGTC-GAATCA
65 CTTTATTTG-TTT-AC-TCAGAATTT
*
22795469 GATCCAAAATGATTTGGCATTACTGTGTTTACAAGAAGCAAATCGAAGACATAGCAGATCTGACC
1 GATCCAAGATGATTTGGCATTACTGTGTTTACAAGAAGCAAATCGAAGACATAGCAGATCTGACC
22795534 TTTATTTGTTTACTCAGAATTT
66 TTTATTTGTTTACTCAGAATTT
22795556 GATCCAAGATGATTTG
1 GATCCAAGATGATTTG
22795572 ACATCTCTAT
Statistics
Matches: 166, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
86 5 0.03
87 82 0.49
88 6 0.04
89 70 0.42
90 3 0.02
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (87 bp):
GATCCAAGATGATTTGGCATTACTGTGTTTACAAGAAGCAAATCGAAGACATAGCAGATCTGACC
TTTATTTGTTTACTCAGAATTT
Found at i:22795501 original size:89 final size:88
Alignment explanation
Indices: 22795245--22795536 Score: 410
Period size: 89 Copynumber: 3.3 Consensus size: 88
22795235 TGGAGAGAAG
* * *
22795245 ATCGAAGACATAGCAGATCTGACCTTTGGACGATTTCACATTGAAGCAGATCCGAAATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTTGGACGATTTCAC-TCGAATCAGATCCAAAATGATTTGG
22795310 CATTACTGTGTTTACAAGAAGCAA
65 CATTACTGTGTTTACAAGAAGCAA
* **** ** *
22795334 ATCGAAGACATAGTAGATCTGACCTTTATTTG-TTT-ACTCAGAATTTGATCCAAGATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTTGGACGATTTCACTC-GAATCAGATCCAAAATGATTTGG
*
22795397 CATT-CTTGTGTTTACAAGGAGCAA
65 CATTAC-TGTGTTTACAAGAAGCAA
*
22795421 ATTGAAGACATAGCAGATCTGACCTTTGGACGATTTCACGTCGAATCAGATCCAAAATGATTTGG
1 ATCGAAGACATAGCAGATCTGACCTTTGGACGATTTCAC-TCGAATCAGATCCAAAATGATTTGG
22795486 CATTACTGTGTTTACAAGAAGCAA
65 CATTACTGTGTTTACAAGAAGCAA
22795510 ATCGAAGACATAGCAGATCTGACCTTT
1 ATCGAAGACATAGCAGATCTGACCTTT
22795537 ATTTGTTTAC
Statistics
Matches: 174, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
86 2 0.01
87 67 0.39
88 6 0.03
89 96 0.55
90 3 0.02
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (88 bp):
ATCGAAGACATAGCAGATCTGACCTTTGGACGATTTCACTCGAATCAGATCCAAAATGATTTGGC
ATTACTGTGTTTACAAGAAGCAA
Found at i:22795542 original size:176 final size:176
Alignment explanation
Indices: 22795248--22795571 Score: 603
Period size: 176 Copynumber: 1.8 Consensus size: 176
22795238 AGAGAAGATC
* *
22795248 GAAGACATAGCAGATCTGACCTTTGGACGATTTCACATTGAAGCAGATCCGAAATGATTTGGCAT
1 GAAGACATAGCAGATCTGACCTTTGGACGATTTCACATCGAAGCAGATCCAAAATGATTTGGCAT
*
22795313 TACTGTGTTTACAAGAAGCAAATCGAAGACATAGTAGATCTGACCTTTATTTGTTTACTCAGAAT
66 TACTGTGTTTACAAGAAGCAAATCGAAGACATAGCAGATCTGACCTTTATTTGTTTACTCAGAAT
22795378 TTGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATT
131 TTGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATT
* *
22795424 GAAGACATAGCAGATCTGACCTTTGGACGATTTCACGTCGAATCAGATCCAAAATGATTTGGCAT
1 GAAGACATAGCAGATCTGACCTTTGGACGATTTCACATCGAAGCAGATCCAAAATGATTTGGCAT
22795489 TACTGTGTTTACAAGAAGCAAATCGAAGACATAGCAGATCTGACCTTTATTTGTTTACTCAGAAT
66 TACTGTGTTTACAAGAAGCAAATCGAAGACATAGCAGATCTGACCTTTATTTGTTTACTCAGAAT
22795554 TTGATCCAAGATGATTTG
131 TTGATCCAAGATGATTTG
22795572 ACATCTCTAT
Statistics
Matches: 143, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
176 143 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (176 bp):
GAAGACATAGCAGATCTGACCTTTGGACGATTTCACATCGAAGCAGATCCAAAATGATTTGGCAT
TACTGTGTTTACAAGAAGCAAATCGAAGACATAGCAGATCTGACCTTTATTTGTTTACTCAGAAT
TTGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAGCAAATT
Found at i:22795716 original size:41 final size:41
Alignment explanation
Indices: 22795664--22795745 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
22795654 CAGATCTAAC
* * *
22795664 CTTTGGATGTTTTCACATCGAAGCAGATATAAGATGATTTG
1 CTTTGGATGTTTTCACAACAAAGCAGATACAAGATGATTTG
*
22795705 CTTTGGTTGTTTTCACAACAAAGCAGATACAAGATGATTTG
1 CTTTGGATGTTTTCACAACAAAGCAGATACAAGATGATTTG
22795746 GCATTCTTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.35
Consensus pattern (41 bp):
CTTTGGATGTTTTCACAACAAAGCAGATACAAGATGATTTG
Found at i:22795791 original size:261 final size:261
Alignment explanation
Indices: 22795467--22795965 Score: 759
Period size: 261 Copynumber: 1.9 Consensus size: 261
22795457 CACGTCGAAT
* *
22795467 CAGATCCAAAATGATTTGGCATTACTGTGTTTACAAGAAGCAAATCGAAGACATAGCAGATCTGA
1 CAGATACAAAATGATTTGGCATTACTGTGTTTACAAGAAGCAAATCGAAGAAATAGCAGATCTGA
** * ****
22795532 CCTTTATTTGTTTACTC-AGAATTTGATCCAAGATGATTTGACATCTCTATATTGTCAGAGAACA
66 CCTTTAGGTGTTTACACTA-AAGCAAATCCAAGATGATTTGACATCTCTATATTGTCAGAGAACA
* * *
22795596 AATCGAAGAACCAGATTTGTCATCCCCATATTCGACGGAGAGCAGATCGAAGACATACCAGATCT
130 AATCAAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGCAGATCGAAGACATACCAGATCT
22795661 AACCTTTGGATGTTTTCACATCGAAGCAGATATAAGATGATTTGCTTTGGTTGTTTTCACAACAA
195 AACCTTTGGATGTTTTCACATCGAAGCAGATATAAGATGATTTGCTTTGGTTGTTTTCACAACAA
22795726 AG
260 AG
* * * * *
22795728 CAGATACAAGATGATTTGGCATT-CTTGTGTTTACAAGGAGTAAGTCGAAGAAATAGTAGATCTG
1 CAGATACAAAATGATTTGGCATTAC-TGTGTTTACAAGAAGCAAATCGAAGAAATAGCAGATCTG
* *
22795792 ACCTTTAGGTGTTTACACTAAAGCAAATCCAAGATGATTTGGCATCTCTGTATTGTCAGAGAACA
65 ACCTTTAGGTGTTTACACTAAAGCAAATCCAAGATGATTTGACATCTCTATATTGTCAGAGAACA
* * *
22795857 AATCAAAGAAACAGATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACATAGCAGATCT
130 AATCAAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGCAGATCGAAGACATACCAGATCT
*
22795922 GACCTTTGGATGTTTTCACATCGAAGCAGATATAAGATGATTTG
195 AACCTTTGGATGTTTTCACATCGAAGCAGATATAAGATGATTTG
22795966 ACATTCTTGT
Statistics
Matches: 213, Mismatches: 23, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
260 1 0.00
261 211 0.99
262 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (261 bp):
CAGATACAAAATGATTTGGCATTACTGTGTTTACAAGAAGCAAATCGAAGAAATAGCAGATCTGA
CCTTTAGGTGTTTACACTAAAGCAAATCCAAGATGATTTGACATCTCTATATTGTCAGAGAACAA
ATCAAAGAAACAGATTTGGCATCCCCATATTCGACGGAGAGCAGATCGAAGACATACCAGATCTA
ACCTTTGGATGTTTTCACATCGAAGCAGATATAAGATGATTTGCTTTGGTTGTTTTCACAACAAA
G
Found at i:22795927 original size:131 final size:131
Alignment explanation
Indices: 22795505--22795965 Score: 363
Period size: 131 Copynumber: 3.5 Consensus size: 131
22795495 GTTTACAAGA
* *** * ***
22795505 AGCAAATCGAAGACATAGCAGATCTGACCTTTATTTGTTTACTC-AGAATTTGATCCAAGATGAT
1 AGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTACACTA-AAGCAGATCCAAGATGAT
* * * * * * *
22795569 TTGACATCTCTATATTGTCAGAGAACAAATCGAAGAACCAGATTTGTCATCCCCATATTCGACGG
65 TTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTTGACGG
22795634 AG
130 AG
* * * * **
22795636 AGCAGATCGAAGACATACCAGATCTAACCTTTGGATGTTTTCACATCGAAGCAGATATAAGATGA
1 AGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTACAC-T-AAAGCAGATCCAAGATGA
* * * * * * * * *
22795701 TTT-GC-T-T-TGGTTGTTTTC--ACAACAAAGCAGATACAAGATGATTTGGCAT-T-CTTGTGT
64 TTTGGCATCTCT-G-TATTGTCAGAGAACAAATCAAAGA-AACA-GATTTGGCATCTCCATAT-T
*
22795758 TTACAAGGAG
124 TGAC--GGAG
* * *
22795768 TA--AG-TCGAAGAAATAGTAGATCTGACCTTTAGG-TGTTTACACTAAAGCAAATCCAAGATGA
1 -AGCAGATCGAAGACATAGCAGATCTGACCTTT-GGATGTTTACACTAAAGCAGATCCAAGATGA
22795829 TTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTTGACG
64 TTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTTGACG
22795894 GAG
129 GAG
* * **
22795897 AGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTTCACATCGAAGCAGATATAAGATGA
1 AGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTACAC-T-AAAGCAGATCCAAGATGA
22795962 TTTG
64 TTTG
22795966 ACATTCTTGT
Statistics
Matches: 247, Mismatches: 57, Indels: 50
0.70 0.16 0.14
Matches are distributed among these distances:
128 18 0.07
129 21 0.09
130 56 0.23
131 97 0.39
132 21 0.09
133 34 0.14
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (131 bp):
AGCAGATCGAAGACATAGCAGATCTGACCTTTGGATGTTTACACTAAAGCAGATCCAAGATGATT
TGGCATCTCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTTGACGGA
G
Done.