Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 70 of 279
Found at i:23116169 original size:42 final size:42
Alignment explanation
Indices: 23116111--23116194 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
23116101 TATTTTTATT
23116111 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
1 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
* *
23116153 TTATGTTTTAGTAGTTTATTAGAATAAGGGAACTGTTTTCCC
1 TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
23116195 AATTAGGATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.27, C:0.11, G:0.17, T:0.45
Consensus pattern (42 bp):
TTATCTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
Found at i:23118300 original size:22 final size:23
Alignment explanation
Indices: 23118252--23118300 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
23118242 TTAATAGTAA
*
23118252 TTAGAAAGTAGAGTTCTATTTTAT
1 TTAGAAAGCAGAGTTCTA-TTTAT
*
23118276 TTAGAAAGCATAGTTCTA-TTAT
1 TTAGAAAGCAGAGTTCTATTTAT
23118298 TTA
1 TTA
23118301 TACTTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 7 0.30
24 16 0.70
ACGTcount: A:0.35, C:0.06, G:0.14, T:0.45
Consensus pattern (23 bp):
TTAGAAAGCAGAGTTCTATTTAT
Found at i:23118767 original size:12 final size:13
Alignment explanation
Indices: 23118736--23118766 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
23118726 TAGTTTTAAA
23118736 AAAAAATATATTT
1 AAAAAATATATTT
*
23118749 AAAAAATATTTTT
1 AAAAAATATATTT
23118762 AAAAA
1 AAAAA
23118767 TCAAATATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
AAAAAATATATTT
Found at i:23119219 original size:17 final size:18
Alignment explanation
Indices: 23119182--23119219 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
23119172 TCTTGCTACT
23119182 ATTTTGTTATTATTAAGTTA
1 ATTTTGTTATTATT-A-TTA
23119202 ATTTTGTTATTATT-TTA
1 ATTTTGTTATTATTATTA
23119219 A
1 A
23119220 AGACATTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
20 14 0.78
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (18 bp):
ATTTTGTTATTATTATTA
Found at i:23119402 original size:12 final size:12
Alignment explanation
Indices: 23119381--23119414 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
23119371 TATATATTTT
*
23119381 AAAATTATATAA
1 AAAATAATATAA
23119393 AAAATAATATAA
1 AAAATAATATAA
*
23119405 AAATTAATAT
1 AAAATAATAT
23119415 GAGCTGGCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:23119758 original size:7 final size:8
Alignment explanation
Indices: 23119741--23119777 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
23119731 GGTTGCATTA
23119741 AAAAAAGG
1 AAAAAAGG
*
23119749 AAAAAAGA
1 AAAAAAGG
23119757 AAAAAAGG
1 AAAAAAGG
23119765 -AAAAAGG
1 AAAAAAGG
23119772 AAAAAA
1 AAAAAA
23119778 TAATCCTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (8 bp):
AAAAAAGG
Found at i:23119759 original size:16 final size:16
Alignment explanation
Indices: 23119740--23119777 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
23119730 AGGTTGCATT
23119740 AAAAAAAGGAAAAAAG
1 AAAAAAAGGAAAAAAG
*
23119756 AAAAAAAGGAAAAAGG
1 AAAAAAAGGAAAAAAG
23119772 AAAAAA
1 AAAAAA
23119778 TAATCCTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAAAAGGAAAAAAG
Found at i:23133830 original size:6 final size:6
Alignment explanation
Indices: 23133819--23133858 Score: 71
Period size: 6 Copynumber: 6.5 Consensus size: 6
23133809 AGGTTTTCTC
23133819 GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GAGAAAT GAA
1 GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GA-AAAT GAA
23133859 TTCATTTAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.65, C:0.00, G:0.20, T:0.15
Consensus pattern (6 bp):
GAAAAT
Found at i:23136764 original size:17 final size:18
Alignment explanation
Indices: 23136734--23136790 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
23136724 ATAACAAATT
* *
23136734 GGGAGTTAAAAATG-AGA
1 GGGAGTTGAGAATGAAGA
*
23136751 GGGAGTTGAGAATGAAGT
1 GGGAGTTGAGAATGAAGA
*
23136769 GGGAGATGAGAATGAAGA
1 GGGAGTTGAGAATGAAGA
23136787 GGGA
1 GGGA
23136791 TCTGAATATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 12 0.35
18 22 0.65
ACGTcount: A:0.40, C:0.00, G:0.44, T:0.16
Consensus pattern (18 bp):
GGGAGTTGAGAATGAAGA
Found at i:23144199 original size:19 final size:20
Alignment explanation
Indices: 23144175--23144212 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
23144165 GGTACCACCA
23144175 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
23144194 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
23144213 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:23145020 original size:30 final size:30
Alignment explanation
Indices: 23144986--23145045 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
23144976 ATTTAATACG
23144986 AACTTTAAAAAAAGTACACTTTTGCCCCTA
1 AACTTTAAAAAAAGTACACTTTTGCCCCTA
*** * *
23145016 AACTTTTTCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAAGTACACTTTTGCCCCTA
23145046 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAAGTACACTTTTGCCCCTA
Found at i:23150734 original size:6 final size:6
Alignment explanation
Indices: 23150723--23150749 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
23150713 ATTTATCTAA
23150723 TATAAT TATAAT TATAAT TATAAT TAT
1 TATAAT TATAAT TATAAT TATAAT TAT
23150750 TAAGAGGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TATAAT
Found at i:23150969 original size:34 final size:34
Alignment explanation
Indices: 23150921--23150989 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
23150911 TTGGTATACT
* * *
23150921 ATCATGACTTCATCTATTGAATTCTAGGAAAACA
1 ATCATGAATCCATCTATTGAATTCCAGGAAAACA
23150955 ATCATGAATCCATCTATTGAATTCCAGGAAAACA
1 ATCATGAATCCATCTATTGAATTCCAGGAAAACA
23150989 A
1 A
23150990 CATAGAAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.29
Consensus pattern (34 bp):
ATCATGAATCCATCTATTGAATTCCAGGAAAACA
Found at i:23152807 original size:37 final size:38
Alignment explanation
Indices: 23152741--23152855 Score: 146
Period size: 37 Copynumber: 3.1 Consensus size: 38
23152731 AGCGTAAAGT
* *
23152741 TATTCGGGCTTCATGCCTAGAA-GCTTTGTGCCGGTGA
1 TATTTGGGCTCCATGCCTAGAAGGCTTTGTGCCGGTGA
*
23152778 TATTTGGGC-CCATGCCTAAAAGGCTTTGTGCCGGTGA
1 TATTTGGGCTCCATGCCTAGAAGGCTTTGTGCCGGTGA
*** *
23152815 TATTTGGGCTTTGTGCCTAGTAGGCTTTGTGCCGGTG-
1 TATTTGGGCTCCATGCCTAGAAGGCTTTGTGCCGGTGA
23152852 TATT
1 TATT
23152856 ATATCAGGCT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
36 10 0.15
37 36 0.53
38 22 0.32
ACGTcount: A:0.15, C:0.19, G:0.30, T:0.36
Consensus pattern (38 bp):
TATTTGGGCTCCATGCCTAGAAGGCTTTGTGCCGGTGA
Found at i:23152881 original size:41 final size:41
Alignment explanation
Indices: 23152798--23152989 Score: 237
Period size: 41 Copynumber: 4.8 Consensus size: 41
23152788 CATGCCTAAA
** *
23152798 AGGCTTTGTGCCGGTG-A-TAT-TTGGGCTTTGTGCCTAGT
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
* *
23152836 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTGCCTAGC
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
* *
23152877 AGGCTTTGTGCTGGTGTATTATATTAGGCTTTGTACCTAGT
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
* * ** *
23152918 AGTCTTCGTTTCGGTGTATTATATCAGGTTTTGTACCTAGT
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
* *
23152959 AGGTTTTGTGCCGGTGTATTATGTCAGGCTT
1 AGGCTTTGTGCCGGTGTATTATATCAGGCTT
23152990 CGAGCATAGC
Statistics
Matches: 130, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
38 16 0.12
39 1 0.01
40 3 0.02
41 110 0.85
ACGTcount: A:0.15, C:0.15, G:0.29, T:0.42
Consensus pattern (41 bp):
AGGCTTTGTGCCGGTGTATTATATCAGGCTTTGTACCTAGT
Found at i:23153004 original size:82 final size:82
Alignment explanation
Indices: 23152847--23153006 Score: 214
Period size: 82 Copynumber: 2.0 Consensus size: 82
23152837 GGCTTTGTGC
* * * *
23152847 CGGTGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGTATTATATTAGGCTTTGTA
1 CGGTGTATTATATCAGGCTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTA
* *
23152912 CCTAGTAGTCTTCGTTT
66 CATAGCAGTCTTCGTTT
* * * *
23152929 CGGTGTATTATATCAGGTTTTGTACCTAGTAGGTTTTGTGCCGGTGTATTATGTCAGGCTTCG-A
1 CGGTGTATTATATCAGGCTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTA
23152993 GCATAGCAGTCTTC
66 -CATAGCAGTCTTC
23153007 ATGCCAATGT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
81 1 0.01
82 66 0.99
ACGTcount: A:0.17, C:0.16, G:0.26, T:0.41
Consensus pattern (82 bp):
CGGTGTATTATATCAGGCTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTA
CATAGCAGTCTTCGTTT
Found at i:23153018 original size:82 final size:82
Alignment explanation
Indices: 23152850--23153028 Score: 198
Period size: 82 Copynumber: 2.2 Consensus size: 82
23152840 TTTGTGCCGG
* * * * * *
23152850 TGTATTATATCAGGCTTTGTGCCTAGCAGGCTTTGTGCTGGTGTATTATATTAGGCTTTGTACCT
1 TGTATTATATCAGGTTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTACAT
* * ** **
23152915 AGTAGTCTTCGTTTCGG
66 AGCAGTCTTCATGCCAA
* * *
23152932 TGTATTATATCAGGTTTTGTACCTAGTAGGTTTTGTGCCGGTGTATTATGTCAGGCTTCG-AGCA
1 TGTATTATATCAGGTTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTA-CA
23152996 TAGCAGTCTTCATGCCAA
65 TAGCAGTCTTCATGCCAA
*
23153014 TGTATTGTATCAGGT
1 TGTATTATATCAGGT
23153029 AAGTTGTACT
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
81 1 0.01
82 79 0.99
ACGTcount: A:0.18, C:0.16, G:0.25, T:0.41
Consensus pattern (82 bp):
TGTATTATATCAGGTTTTGTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGCTTCGTACAT
AGCAGTCTTCATGCCAA
Found at i:23160047 original size:27 final size:25
Alignment explanation
Indices: 23159981--23160029 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
23159971 CCAAACCAAA
* *
23159981 CCTTTATGACAAATTTTCTGAAAAG
1 CCTTTGTGGCAAATTTTCTGAAAAG
23160006 CCTTTGTGGCAAATTTTCTGAAAA
1 CCTTTGTGGCAAATTTTCTGAAAA
23160030 AAGCTTTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (25 bp):
CCTTTGTGGCAAATTTTCTGAAAAG
Found at i:23166485 original size:24 final size:24
Alignment explanation
Indices: 23166446--23166504 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
23166436 TGGATACTCC
* *
23166446 ATAGCT-CGTGTGAGTAGCATTGT
1 ATAGCTACGTTTGAGTAGCATCGT
23166469 ATAGCTACGTTTGAGTAGCATCGT
1 ATAGCTACGTTTGAGTAGCATCGT
*
23166493 GTAGCTACGTTT
1 ATAGCTACGTTT
23166505 CAACCCATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 6 0.19
24 26 0.81
ACGTcount: A:0.22, C:0.15, G:0.27, T:0.36
Consensus pattern (24 bp):
ATAGCTACGTTTGAGTAGCATCGT
Found at i:23166553 original size:25 final size:25
Alignment explanation
Indices: 23166522--23166613 Score: 105
Period size: 25 Copynumber: 3.7 Consensus size: 25
23166512 TAACTTGCGT
* *
23166522 GAGCATACCAATTTACAGCTCATGA
1 GAGCATACCGATCTACAGCTCATGA
* * *
23166547 GAGCATACTGATCTACAACTCATGT
1 GAGCATACCGATCTACAGCTCATGA
* * *
23166572 GAGCATA-CTATTTACAGCTCGTGA
1 GAGCATACCGATCTACAGCTCATGA
23166596 GAGCATACCGATCTACAG
1 GAGCATACCGATCTACAG
23166614 TTTGAGTGAG
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
24 18 0.34
25 35 0.66
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (25 bp):
GAGCATACCGATCTACAGCTCATGA
Found at i:23171572 original size:28 final size:27
Alignment explanation
Indices: 23171516--23171572 Score: 62
Period size: 28 Copynumber: 2.1 Consensus size: 27
23171506 TGACAATGAT
* **
23171516 GACAAAATTTTTCATCTCTATAGTTGG
1 GACAAAATTTTGCATCTCTATAGAAGG
23171543 GACAAAATTTATGCATCTCTATCA-AAGG
1 GACAAAATTT-TGCATCTCTAT-AGAAGG
23171571 GA
1 GA
23171573 ATTAGGAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 10 0.40
28 14 0.56
29 1 0.04
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (27 bp):
GACAAAATTTTGCATCTCTATAGAAGG
Found at i:23178438 original size:40 final size:40
Alignment explanation
Indices: 23178378--23178483 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
23178368 ACGACAAATT
* * *
23178378 GGCTACGTATGGCACTTAGTGTGCGATTCAAGATAGCTTG
1 GGCTATGTATGGCACCTAGTGTGCGATTCAAGATAGCTTC
*
23178418 GGCTATGTATGACACCTAGTGTGCGATTCAAGATAGCTTC
1 GGCTATGTATGGCACCTAGTGTGCGATTCAAGATAGCTTC
23178458 GGCTATGTATGGCACCTAGTGTGCGA
1 GGCTATGTATGGCACCTAGTGTGCGA
23178484 GGTTAAAACA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
GGCTATGTATGGCACCTAGTGTGCGATTCAAGATAGCTTC
Found at i:23180977 original size:18 final size:17
Alignment explanation
Indices: 23180954--23180998 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 17
23180944 GTCAACAGAG
23180954 CTTGCAAAGCCAATGAA
1 CTTGCAAAGCCAATGAA
23180971 TCTTGCAAAGCCAATGAA
1 -CTTGCAAAGCCAATGAA
23180989 CTTAGCAAAG
1 CTT-GCAAAG
23180999 TAAAGAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 3 0.12
18 23 0.88
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (17 bp):
CTTGCAAAGCCAATGAA
Found at i:23186071 original size:40 final size:40
Alignment explanation
Indices: 23186016--23186439 Score: 715
Period size: 40 Copynumber: 10.6 Consensus size: 40
23186006 CGACAATTCA
*
23186016 GCTATGTATGGCACTTAGTGTGCGATTCAAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
23186056 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTGG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
23186096 GCTATGTATGGCACCTAGTGTGTGATTCAAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
23186136 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTGG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
23186176 GCTATGTATGGCACCTAGTGTGTGATTCAAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
23186216 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTGG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
23186256 GCTATGTATGGCACCTAGTGTGTGATTCAAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
23186296 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTGG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
23186336 GCTATGTATGGCACCTAGTGTGTGATTCAAGATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
*
23186376 GCTATGTATGGCACTTAGTGTGTGAGGTT-AAAATAGCTTCG
1 GCTATGTATGGCACTTAGTGTGTGA--TTCAAGATAGCTTCG
*
23186417 GCTATGTTTTGGCACTTAGTGTG
1 GCTATG-TATGGCACTTAGTGTG
23186440 CGATAATTTG
Statistics
Matches: 362, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
40 328 0.91
41 17 0.05
42 17 0.05
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (40 bp):
GCTATGTATGGCACTTAGTGTGTGATTCAAGATAGCTTCG
Found at i:23191709 original size:28 final size:27
Alignment explanation
Indices: 23191633--23191709 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 27
23191623 AATAAAAATC
* *
23191633 AATAAAAATTATAAAATTATGAAATTTT
1 AATAAAAATTAAAAAATT-TTAAATTTT
*
23191661 AATAAAAA-TAAAAAATATTTAATTTTT
1 AATAAAAATTAAAAAAT-TTTAAATTTT
*
23191688 ATTAAAAATTAGAAAAATTTTA
1 AATAAAAATTA-AAAAATTTTA
23191710 TAAAATTGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
27 21 0.50
28 15 0.36
29 6 0.14
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (27 bp):
AATAAAAATTAAAAAATTTTAAATTTT
Found at i:23191742 original size:20 final size:20
Alignment explanation
Indices: 23191719--23191757 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
23191709 ATAAAATTGT
23191719 AAAAAT-GATAAAATATATAG
1 AAAAATAGA-AAAATATATAG
23191739 AAAAATAGAAAAATATATA
1 AAAAATAGAAAAATATATA
23191758 AAATTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (20 bp):
AAAAATAGAAAAATATATAG
Found at i:23191769 original size:39 final size:39
Alignment explanation
Indices: 23191726--23191802 Score: 95
Period size: 39 Copynumber: 1.9 Consensus size: 39
23191716 TGTAAAAATG
*
23191726 ATAAAAT-ATATAGAAAA-ATAGAAAAATATATAAAATTTT
1 ATAAAATCAT-TAGAAAAGATAAAAAAATATA-AAAATTTT
*
23191765 ATAAAGTCATTAGAAAATGATAAAAAAATATAAAAATT
1 ATAAAATCATTAGAAAA-GATAAAAAAATATAAAAATT
23191803 ATCATACCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
39 13 0.39
40 8 0.24
41 12 0.36
ACGTcount: A:0.64, C:0.01, G:0.06, T:0.29
Consensus pattern (39 bp):
ATAAAATCATTAGAAAAGATAAAAAAATATAAAAATTTT
Found at i:23192004 original size:19 final size:19
Alignment explanation
Indices: 23191976--23192013 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
23191966 TTAAAGGGTC
23191976 TTTTTGATTCATTTTATAA
1 TTTTTGATTCATTTTATAA
* *
23191995 TTTTTTATTCTTTTTATAA
1 TTTTTGATTCATTTTATAA
23192014 AATTTTTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTTTGATTCATTTTATAA
Found at i:23192019 original size:19 final size:20
Alignment explanation
Indices: 23191977--23192019 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
23191967 TAAAGGGTCT
*
23191977 TTTTGATTCATTTTAT-AAT
1 TTTTGATTCATTTTATAAAA
* *
23191996 TTTTTATTCTTTTTATAAAA
1 TTTTGATTCATTTTATAAAA
23192016 TTTT
1 TTTT
23192020 TACAACTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTGATTCATTTTATAAAA
Found at i:23192109 original size:79 final size:79
Alignment explanation
Indices: 23192016--23192175 Score: 320
Period size: 79 Copynumber: 2.0 Consensus size: 79
23192006 TTTTATAAAA
23192016 TTTTTACAACTTTTTACAATTTTTTACTATTTATATTTTTTTCTAATTTTTGGTGAAATTTAAAT
1 TTTTTACAACTTTTTACAATTTTTTACTATTTATATTTTTTTCTAATTTTTGGTGAAATTTAAAT
23192081 ATTTTTATTAAATT
66 ATTTTTATTAAATT
23192095 TTTTTACAACTTTTTACAATTTTTTACTATTTATATTTTTTTCTAATTTTTGGTGAAATTTAAAT
1 TTTTTACAACTTTTTACAATTTTTTACTATTTATATTTTTTTCTAATTTTTGGTGAAATTTAAAT
23192160 ATTTTTATTAAATT
66 ATTTTTATTAAATT
23192174 TT
1 TT
23192176 AATAATTTTT
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 81 1.00
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (79 bp):
TTTTTACAACTTTTTACAATTTTTTACTATTTATATTTTTTTCTAATTTTTGGTGAAATTTAAAT
ATTTTTATTAAATT
Found at i:23192172 original size:19 final size:20
Alignment explanation
Indices: 23192150--23192187 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
23192140 ATTTTTGGTG
23192150 AAATTTAAAT-ATTTTTATT
1 AAATTTAAATAATTTTTATT
*
23192169 AAATTTTAATAATTTTTAT
1 AAATTTAAATAATTTTTAT
23192188 AACTTTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
AAATTTAAATAATTTTTATT
Found at i:23192222 original size:10 final size:9
Alignment explanation
Indices: 23192160--23192221 Score: 54
Period size: 9 Copynumber: 6.7 Consensus size: 9
23192150 AAATTTAAAT
23192160 ATTTTTATTAA
1 ATTTTTA-T-A
*
23192171 ATTTTAATA
1 ATTTTTATA
23192180 ATTTTTATA
1 ATTTTTATA
* *
23192189 ACTTTTATTG
1 ATTTTTA-TA
23192199 ATTTTT-TA
1 ATTTTTATA
*
23192207 TTTTTTATA
1 ATTTTTATA
23192216 ATTTTT
1 ATTTTT
23192222 TTGTCACATG
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
8 6 0.15
9 22 0.54
10 7 0.17
11 6 0.15
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (9 bp):
ATTTTTATA
Found at i:23194729 original size:29 final size:29
Alignment explanation
Indices: 23194695--23194769 Score: 132
Period size: 29 Copynumber: 2.6 Consensus size: 29
23194685 GTCATTAGGG
23194695 ATTATCAGGCACTATGTGCCGGTGTTTAT
1 ATTATCAGGCACTATGTGCCGGTGTTTAT
*
23194724 ATTATCAGGCACTATGTGCTGGTGTTTAT
1 ATTATCAGGCACTATGTGCCGGTGTTTAT
*
23194753 ATTATCAGGTACTATGT
1 ATTATCAGGCACTATGT
23194770 ACCAATACTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.40
Consensus pattern (29 bp):
ATTATCAGGCACTATGTGCCGGTGTTTAT
Found at i:23194828 original size:17 final size:17
Alignment explanation
Indices: 23194808--23194844 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
23194798 ACCTATGTTC
*
23194808 ATGTTGTATCAGGGACT
1 ATGTTGAATCAGGGACT
23194825 ATG-TGAATCAGGGACT
1 ATGTTGAATCAGGGACT
23194841 ATGT
1 ATGT
23194845 GTCGGTGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (17 bp):
ATGTTGAATCAGGGACT
Found at i:23194836 original size:16 final size:16
Alignment explanation
Indices: 23194815--23194845 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
23194805 TTCATGTTGT
23194815 ATCAGGGACTATGTGA
1 ATCAGGGACTATGTGA
23194831 ATCAGGGACTATGTG
1 ATCAGGGACTATGTG
23194846 TCGGTGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.26
Consensus pattern (16 bp):
ATCAGGGACTATGTGA
Found at i:23206684 original size:40 final size:40
Alignment explanation
Indices: 23206590--23206734 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
23206580 TACTCGAATG
* *
23206590 ATATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
23206631 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
23206671 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
23206711 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
23206735 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:23210194 original size:13 final size:13
Alignment explanation
Indices: 23210176--23210201 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23210166 ATTAAGTACC
23210176 ATTTTAAATCATA
1 ATTTTAAATCATA
23210189 ATTTTAAATCATA
1 ATTTTAAATCATA
23210202 TTTAGTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTTTAAATCATA
Found at i:23214224 original size:21 final size:21
Alignment explanation
Indices: 23214200--23214241 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
23214190 ATATTTAAAC
23214200 ATAAAATATATAAT-TTTTTAT
1 ATAAAAT-TATAATATTTTTAT
* *
23214221 ATAACATTATTATATTTTTAT
1 ATAAAATTATAATATTTTTAT
23214242 CTTTTTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
ATAAAATTATAATATTTTTAT
Found at i:23218498 original size:79 final size:81
Alignment explanation
Indices: 23218387--23218571 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
23218377 GCTACTCGTT
* * * *
23218387 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTC-GGGCTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTC-GGATCTTAACCC
* *
23218450 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
23218467 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTAGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTCGGATCTTAACCCGG
*
23218531 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
23218547 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
23218572 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.63
80 31 0.34
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTAGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:23218571 original size:40 final size:40
Alignment explanation
Indices: 23218387--23218571 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
23218377 GCTACTCGTT
* * * *
23218387 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * *
23218427 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
*
23218467 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* *
23218506 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
23218547 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23218572 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 80 0.63
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:23226563 original size:79 final size:82
Alignment explanation
Indices: 23226452--23226636 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
23226442 GCTACTCGTT
* *
23226452 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
23226515 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
23226532 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
23226595 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
23226612 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23226637 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:23226636 original size:40 final size:40
Alignment explanation
Indices: 23226433--23226636 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
23226423 CGGAATTTAA
** *
23226433 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23226473 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
23226513 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23226552 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
23226592 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
23226632 CCGGA
1 CCGGA
23226637 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:23236762 original size:46 final size:46
Alignment explanation
Indices: 23236712--23236887 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
23236702 TGGTTGAGCA
23236712 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
23236758 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
23236803 CATTCGAACTCGTTGAGTTGAGTTCGAGTTCA-TTCATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT-ATGGATGCAAATG
* * * *
23236851 CCCGAGCTCTTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23236888 GTGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 57 0.54
47 30 0.29
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:23236873 original size:93 final size:93
Alignment explanation
Indices: 23236709--23236880 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
23236699 GGATGGTTGA
*
23236709 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
23236774 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
23236802 GCATTCGAACTCGTTGAGTTGAGTTCGAGTTCA-TTCATGGATGCGAATGCCCGAGCTCTTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT-ATGGATGCAAATGCCCGAACTCGTTGAG
23236866 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
23236881 CTTATGGGTG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:23240662 original size:13 final size:13
Alignment explanation
Indices: 23240644--23240668 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23240634 AATGAGACAT
23240644 TTGAAATGAATAC
1 TTGAAATGAATAC
23240657 TTGAAATGAATA
1 TTGAAATGAATA
23240669 TGTGATGGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAAATGAATAC
Found at i:23252890 original size:40 final size:40
Alignment explanation
Indices: 23252662--23252889 Score: 375
Period size: 40 Copynumber: 5.7 Consensus size: 40
23252652 GCAAACACAT
* * * *
23252662 TTGCCTTCGGGTTTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
23252702 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
23252742 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
23252782 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
23252822 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
23252862 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
23252890 TCCAATGCTC
Statistics
Matches: 175, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:23266383 original size:47 final size:47
Alignment explanation
Indices: 23266329--23266646 Score: 465
Period size: 47 Copynumber: 6.6 Consensus size: 47
23266319 GTATATTTGA
23266329 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
23266376 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTG
23266425 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
23266472 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG----TATATATGTGATAAGGCCGAATGGCCAATGTG
* * *
23266523 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* * * *
23266570 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
* *
23266617 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
23266647 TCCTGAAGGG
Statistics
Matches: 247, Mismatches: 18, Indels: 12
0.89 0.06 0.04
Matches are distributed among these distances:
47 157 0.64
49 45 0.18
51 45 0.18
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
Found at i:23266521 original size:98 final size:96
Alignment explanation
Indices: 23266329--23266646 Score: 505
Period size: 98 Copynumber: 3.3 Consensus size: 96
23266319 GTATATTTGA
23266329 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
23266394 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
23266425 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--T
23266490 ATATATATGTGATAAGGCCTAATGGCCGATGTG
64 ATATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
23266523 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--T
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* * * * * *
23266586 ATATATGTGACAGGGCCGAGTGGCCAACGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
* *
23266617 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
23266647 TCCTGAAGGG
Statistics
Matches: 209, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
94 54 0.26
96 62 0.30
98 93 0.44
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:23266590 original size:145 final size:146
Alignment explanation
Indices: 23266329--23266635 Score: 498
Period size: 145 Copynumber: 2.1 Consensus size: 146
23266319 GTATATTTGA
23266329 ATGAATGTGAAAGTG----TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
1 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
* *
23266390 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
66 G-ATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAG
*
23266455 GCCGAATGGCCAATGTG
130 GCCGAATGGCCAACGTG
* *
23266472 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
*
23266537 G-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGG
66 GATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGG
*
23266601 CCGAGTGGCCAACGTG
131 CCGAATGGCCAACGTG
*
23266617 ATGGATGTGAAAGTGTATA
1 ATGAATGTGAAAGTGTATA
23266636 AATGTGATAA
Statistics
Matches: 152, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
143 15 0.10
145 92 0.61
147 45 0.30
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (146 bp):
ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGT
GATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGG
CCGAATGGCCAACGTG
Found at i:23267975 original size:40 final size:40
Alignment explanation
Indices: 23267911--23268096 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
23267901 GCTACTCGTT
** * *
23267911 CAAATGCCTTCAAGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
23267951 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
23267991 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
23268031 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
23268072 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
23268097 CATCATTCGA
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 113 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:23269480 original size:56 final size:57
Alignment explanation
Indices: 23269413--23269533 Score: 217
Period size: 57 Copynumber: 2.1 Consensus size: 57
23269403 TATTAGTTTA
23269413 TTGCCCATGCTTCTTATTTTA-TTCTTCCATTAACACAACATGTGTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTGTCATGACATGTT
* *
23269469 TTGCCCATGCTTCTTATTTTATTTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTGTCATGACATGTT
23269526 TTGCCCAT
1 TTGCCCAT
23269534 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
56 21 0.34
57 41 0.66
ACGTcount: A:0.22, C:0.23, G:0.10, T:0.45
Consensus pattern (57 bp):
TTGCCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTGTCATGACATGTT
Found at i:23273262 original size:23 final size:23
Alignment explanation
Indices: 23273232--23273279 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
23273222 TACACCCCGA
*
23273232 ATCAGGAAAAGGGTTTGTGATTT
1 ATCAGGAAAAGGGTTCGTGATTT
23273255 ATCAGGAAAAGGGTTCGTGATTT
1 ATCAGGAAAAGGGTTCGTGATTT
23273278 AT
1 AT
23273280 AGCGAGCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.31, C:0.06, G:0.29, T:0.33
Consensus pattern (23 bp):
ATCAGGAAAAGGGTTCGTGATTT
Found at i:23276950 original size:252 final size:253
Alignment explanation
Indices: 23276504--23277010 Score: 971
Period size: 252 Copynumber: 2.0 Consensus size: 253
23276494 ATATATGATG
*
23276504 TTATGCTTAAATATGTGAATGATAACTTTAAAGAGTAAATTTGTATAAATCTGCTTGGGACAGCA
1 TTATGCTTAAATATGTGAATGATAACTTTAAAGAGTAAATTTGTATAAATCTACTTGGGACAGCA
23276569 GCAGTAACGTGTTTTCAAAAAAAAACACCATAAATTGATGGAGTTGAATTAGAGGCTGAATAAAA
66 GCAGTAACGTGTTTTCAAAAAAAAACACCATAAATTGATGGAGTTGAATTAGAGGCTGAATAAAA
*
23276634 TATTAAATTAAAGCTTAACGAGTCTAGTTTCTTATAAAAGAAACCGTGTAAGCAAAGGAATTGCC
131 TATTAAATTAAAGCTTAACGAGTCTAGTTTCTTATAAAAGAAACCATGTAAGCAAAGGAATTGCC
23276699 GATAATGAGATATTTAAAGTTGTGTGAGACAGTGTCAGAATGACTCTGAAATCCTCTA
196 GATAATGAGATATTTAAAGTTGTGTGAGACAGTGTCAGAATGACTCTGAAATCCTCTA
23276757 TTATGCTTAAATATGTGAATGATAACTTTAAAGAGTAAATTTGTATAAATCTACTTGGGACAGCA
1 TTATGCTTAAATATGTGAATGATAACTTTAAAGAGTAAATTTGTATAAATCTACTTGGGACAGCA
23276822 GCAGTAACGTGTTTTC-AAAAAAAACACCATAAATTGATGGAGTTGAATTAGAGGCTGAATAAAA
66 GCAGTAACGTGTTTTCAAAAAAAAACACCATAAATTGATGGAGTTGAATTAGAGGCTGAATAAAA
* *
23276886 TATTAGATTAAAGCTTAACGCGTCTAGTTTCTTATAAAAGAAACCATGTAAGCAAAGGAATTGCC
131 TATTAAATTAAAGCTTAACGAGTCTAGTTTCTTATAAAAGAAACCATGTAAGCAAAGGAATTGCC
23276951 GATAATGAGATATTTAAAGTTGTGTGAGACAGTGTCAGAATGACTCTGAAATCCTCTA
196 GATAATGAGATATTTAAAGTTGTGTGAGACAGTGTCAGAATGACTCTGAAATCCTCTA
23277009 TT
1 TT
23277011 CTGTATTTAG
Statistics
Matches: 250, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
252 170 0.68
253 80 0.32
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (253 bp):
TTATGCTTAAATATGTGAATGATAACTTTAAAGAGTAAATTTGTATAAATCTACTTGGGACAGCA
GCAGTAACGTGTTTTCAAAAAAAAACACCATAAATTGATGGAGTTGAATTAGAGGCTGAATAAAA
TATTAAATTAAAGCTTAACGAGTCTAGTTTCTTATAAAAGAAACCATGTAAGCAAAGGAATTGCC
GATAATGAGATATTTAAAGTTGTGTGAGACAGTGTCAGAATGACTCTGAAATCCTCTA
Found at i:23280093 original size:57 final size:57
Alignment explanation
Indices: 23280009--23280123 Score: 133
Period size: 57 Copynumber: 2.0 Consensus size: 57
23279999 AAAAATGGTG
* * * *
23280009 AAATGGATAAATAGGAAATATTTGGAAATGATTATGATTTTCTCAAAAAAGAACATGA
1 AAATGGAGAAATA-GAAATATTCGGAAATGAATATGATTTTCTCAAAAAAGAAAATGA
* * * *
23280067 AAATGGAGAAAT-GAAATCATTCGGAAATGAATGTGGTTTTCTCCAAAATGAAAATGA
1 AAATGGAGAAATAGAAAT-ATTCGGAAATGAATATGATTTTCTCAAAAAAGAAAATGA
23280124 CTTAAAAAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
56 5 0.10
57 32 0.67
58 11 0.23
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (57 bp):
AAATGGAGAAATAGAAATATTCGGAAATGAATATGATTTTCTCAAAAAAGAAAATGA
Found at i:23283518 original size:29 final size:29
Alignment explanation
Indices: 23283483--23283539 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
23283473 GAACATAGTA
*
23283483 AAATTTCATGGAAGTATTGTGAAATGATG
1 AAATTTCATGGAAATATTGTGAAATGATG
*
23283512 AAATTTCATGTAAATATTGTGAAATGAT
1 AAATTTCATGGAAATATTGTGAAATGAT
23283540 AATAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.37
Consensus pattern (29 bp):
AAATTTCATGGAAATATTGTGAAATGATG
Found at i:23295361 original size:44 final size:44
Alignment explanation
Indices: 23295311--23295439 Score: 158
Period size: 41 Copynumber: 3.0 Consensus size: 44
23295301 TGAGTTAAGG
23295311 ACTGTTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGT
1 ACTGTTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGT
* * ** * * *
23295355 ACTGTTTTGAATAGTACATTAACT-CA-AAGTTTGAGT-T-AAGG
1 ACTGTTTTGAATAGTACATTAATTAAATAAG-TAAAATATGATGT
23295396 ACTGTTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGT
1 ACTGTTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGT
23295440 TTTAGATCCC
Statistics
Matches: 66, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
41 25 0.38
42 8 0.12
43 8 0.12
44 25 0.38
ACGTcount: A:0.40, C:0.06, G:0.16, T:0.38
Consensus pattern (44 bp):
ACTGTTTTGAATAGTACATTAATTAAATAAGTAAAATATGATGT
Found at i:23295412 original size:41 final size:41
Alignment explanation
Indices: 23295293--23295417 Score: 144
Period size: 41 Copynumber: 3.0 Consensus size: 41
23295283 TGTAATTTTT
*
23295293 TCAAAGTTTGAGTTAAGGACTGTTTTGAATAGTACATTAAT
1 TCAAAGTTTGAGTTAAGGACTGTTTTGAATAGTACATTAAC
* ** * * *
23295334 TAAATAAG-TAAAATATGATGTACTGTTTTGAATAGTACATTAAC
1 T-CA-AAGTTTGAGT-T-AAGGACTGTTTTGAATAGTACATTAAC
23295378 TCAAAGTTTGAGTTAAGGACTGTTTTGAATAGTACATTAA
1 TCAAAGTTTGAGTTAAGGACTGTTTTGAATAGTACATTAA
23295418 TTAAATAAGT
Statistics
Matches: 66, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
41 25 0.38
42 8 0.12
43 8 0.12
44 25 0.38
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (41 bp):
TCAAAGTTTGAGTTAAGGACTGTTTTGAATAGTACATTAAC
Found at i:23296170 original size:68 final size:67
Alignment explanation
Indices: 23296097--23296246 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
23296087 CATCATGTGT
* * * *
23296097 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTTGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTTGCATGCGTGGATACAAGTGAAGGACACC
23296159 ATGTAG
62 ATGTAG
** * *
23296165 ACAAGAGAGCTACGGGATATATGTAGCTAGGTTGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTTGCATGCGTGGATACAAGTGAAGGACACCATGT
23296230 AG
66 AG
23296232 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
23296247 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.23
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTTGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:23296202 original size:64 final size:64
Alignment explanation
Indices: 23296121--23296304 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
23296111 AGACATTATG
* *
23296121 ATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
23296185 ATGTAGCTAGGTTGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTTGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
23296250 AA
63 AA
** * * *
23296252 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
23296305 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 15 0.15
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:23301926 original size:48 final size:47
Alignment explanation
Indices: 23301823--23302131 Score: 252
Period size: 48 Copynumber: 6.6 Consensus size: 47
23301813 CGTGTGCCAA
* * * *
23301823 TGTAAGACATGTCTAGGACAGGCATTGG-C-C-ACAT-TACAAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAC-AA-CTAG
* * * *
23301868 TTTAAAACATGTCTGGGACATGCATCGGCCTCGAGATATACCAACCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-CAACTAG
* * * * * ** * *
23301916 TGTAAAACATGTCTAGGATATGCATCGGCATTGAGA-CGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAACTAG
* *
23301962 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATATACCAACCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-CAACTAG
* * * ** ** * *
23302010 TGTAAGACATGTCTGGGACATTCATCGACATTAAGA-CGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAACTAG
23302056 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA-CTAG
* *
23302104 TGTAAGACCTGTCTAGGACATGGCATCG
1 TGTAAGACATGTCTGGGACAT-GCATCG
23302132 ACACCAATAG
Statistics
Matches: 202, Mismatches: 52, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
45 23 0.11
46 69 0.34
47 6 0.03
48 93 0.46
49 10 0.05
50 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAACTAG
Found at i:23301981 original size:94 final size:94
Alignment explanation
Indices: 23301862--23302172 Score: 419
Period size: 94 Copynumber: 3.3 Consensus size: 94
23301852 CACATTACAA
* * * *
23301862 AGCTAGTTTAAAACATGTCTGGGACATGCATCGGCCTCGAGATATACCAACCAATGTAAAACATG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCAACCAGTGTAAGACATG
* * *
23301927 TCTAGGATATGCATCGGCATTGAGACGAG
66 TCTAGGACATGCATCGACATTAAGACGAG
*
23301956 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAATATACCAACCAGTGTAAGACATG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCAACCAGTGTAAGACATG
* *
23302021 TCTGGGACATTCATCGACATTAAGACGAG
66 TCTAGGACATGCATCGACATTAAGACGAG
* *
23302050 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-CAAGCTAGTGTAAGACCT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCAA-CCAGTGTAAGACAT
** *
23302114 GTCTAGGACATGGCATCGACACCAATAGATGAG
65 GTCTAGGACAT-GCATCGACA-TTA-AGACGAG
*
23302147 AGAC-AGTGTAAGACCTGTCTGGGACA
1 AG-CTAGTGTAAGACATGTCTGGGACA
23302173 CAGCATCAAC
Statistics
Matches: 193, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
93 3 0.02
94 151 0.78
95 8 0.04
96 1 0.01
97 29 0.15
98 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (94 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCAACCAGTGTAAGACATG
TCTAGGACATGCATCGACATTAAGACGAG
Found at i:23302158 original size:49 final size:48
Alignment explanation
Indices: 23302054--23302231 Score: 157
Period size: 49 Copynumber: 3.6 Consensus size: 48
23302044 GACGAGAGCT
* * * * *
23302054 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-ACAAG-C
1 AGTGTAAGACCTGTCT-GGACATGGCATCGACCTCAATAGATGA-AAGAC
*
23302101 TAGTGTAAGACCTGTCTAGGACATGGCATCGACAC-CAATAGATGAGAGAC
1 -AGTGTAAGACCTGTCT-GGACATGGCATCGAC-CTCAATAGATGAAAGAC
** * * * *
23302151 AGTGTAAGACCTGTCTGGGACACAGCATCAACCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCT-GGACATGGCATCGACCTCAATAGATGAAAGAC
23302200 AGTGTAAGACCTGTCTGGCACATGGCATCGAC
1 AGTGTAAGACCTGTCTGG-ACATGGCATCGAC
23302232 TTTGATGTAC
Statistics
Matches: 106, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
48 24 0.23
49 79 0.75
50 3 0.03
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGACATGGCATCGACCTCAATAGATGAAAGAC
Found at i:23304302 original size:26 final size:26
Alignment explanation
Indices: 23304262--23304313 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
23304252 GGAAATAATT
23304262 ACATCTTCAAAGCATCATCAGGAATG
1 ACATCTTCAAAGCATCATCAGGAATG
* *
23304288 ACATCTTCAAGGCATCATTAGGAATG
1 ACATCTTCAAAGCATCATCAGGAATG
23304314 CCTTGTTGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (26 bp):
ACATCTTCAAAGCATCATCAGGAATG
Found at i:23307248 original size:20 final size:20
Alignment explanation
Indices: 23307224--23307281 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
23307214 TAGGGACACC
* *
23307224 AAAGTGTATACAGAGGCATT
1 AAAGTGTAAACAGAGGCAAT
* *
23307244 GAAGTATAAACAGAGGCAAT
1 AAAGTGTAAACAGAGGCAAT
*
23307264 AAAGTGCAAACAGAGGCA
1 AAAGTGTAAACAGAGGCA
23307282 CCAAAGTGCA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.47, C:0.12, G:0.26, T:0.16
Consensus pattern (20 bp):
AAAGTGTAAACAGAGGCAAT
Found at i:23307287 original size:20 final size:20
Alignment explanation
Indices: 23307251--23307293 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
23307241 ATTGAAGTAT
*
23307251 AAACAGAGGCAATAAAGTGC
1 AAACAGAGGCAACAAAGTGC
*
23307271 AAACAGAGGCACCAAAGTGC
1 AAACAGAGGCAACAAAGTGC
23307291 AAA
1 AAA
23307294 TCCCGTACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.19, G:0.23, T:0.07
Consensus pattern (20 bp):
AAACAGAGGCAACAAAGTGC
Found at i:23322468 original size:26 final size:26
Alignment explanation
Indices: 23322439--23322546 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
23322429 TGGTACAAAT
23322439 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
23322465 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23322491 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
23322517 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23322543 TGAT
1 TGAT
23322547 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:23324163 original size:25 final size:22
Alignment explanation
Indices: 23324098--23324151 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
23324088 CATGTTTGAC
23324098 TGTTGTTATTTACTGCATGCCA
1 TGTTGTTATTTACTGCATGCCA
23324120 TGTTGTTATTTACTGCATGCCA
1 TGTTGTTATTTACTGCATGCCA
23324142 TGTTGTTATT
1 TGTTGTTATT
23324152 ATCTGATGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.17, C:0.15, G:0.19, T:0.50
Consensus pattern (22 bp):
TGTTGTTATTTACTGCATGCCA
Found at i:23325383 original size:65 final size:65
Alignment explanation
Indices: 23325290--23325429 Score: 201
Period size: 65 Copynumber: 2.2 Consensus size: 65
23325280 ACTACCGCAA
*** *
23325290 CTCTTTGTGAACGTCCTGTTATATGATCGGTTGTGATCCTGCATATATTGCAAACACAAATGCAG
1 CTCTTTGTGAACGTCCTGTTATATGATCGACAGTGATCCTACATATATTGCAAACACAAATGCAG
* * *
23325355 CTCTTTGT-AAGCGTCTTGTTTTATGATCGACAGTGATCCTACATATATTGCGAACACAAATGCA
1 CTCTTTGTGAA-CGTCCTGTTATATGATCGACAGTGATCCTACATATATTGCAAACACAAATGCA
23325419 G
65 G
23325420 CTCTTTGTGA
1 CTCTTTGTGA
23325430 GTGTCCTGAT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
64 2 0.03
65 63 0.95
66 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (65 bp):
CTCTTTGTGAACGTCCTGTTATATGATCGACAGTGATCCTACATATATTGCAAACACAAATGCAG
Found at i:23325494 original size:24 final size:26
Alignment explanation
Indices: 23325454--23325535 Score: 80
Period size: 26 Copynumber: 3.2 Consensus size: 26
23325444 CTCGCTTGAA
*
23325454 CTTCCTGA-TATATGGCTATTCG-GAG
1 CTTCCTGATTA-AAGGCTATTCGTGAG
*
23325479 C-TCCTGATTAAAGGCTCTTCGTGAG
1 CTTCCTGATTAAAGGCTATTCGTGAG
* * * *
23325504 CTTCCTGATTAAAAGTTATTTGTGAA
1 CTTCCTGATTAAAGGCTATTCGTGAG
23325530 CTTCCT
1 CTTCCT
23325536 AAATATGGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
24 15 0.32
25 7 0.15
26 25 0.53
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (26 bp):
CTTCCTGATTAAAGGCTATTCGTGAG
Found at i:23325513 original size:26 final size:25
Alignment explanation
Indices: 23325454--23325516 Score: 76
Period size: 24 Copynumber: 2.5 Consensus size: 25
23325444 CTCGCTTGAA
*
23325454 CTTCCTGA-TATATGGCTATTCGGAG
1 CTTCCTGATTA-AAGGCTATTCGGAG
*
23325479 C-TCCTGATTAAAGGCTCTTCGTGAG
1 CTTCCTGATTAAAGGCTATTCG-GAG
23325504 CTTCCTGATTAAA
1 CTTCCTGATTAAA
23325517 AGTTATTTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 15 0.45
25 7 0.21
26 11 0.33
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (25 bp):
CTTCCTGATTAAAGGCTATTCGGAG
Found at i:23325596 original size:25 final size:26
Alignment explanation
Indices: 23325568--23325623 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
23325558 CTATTATAAA
*
23325568 GCTCGA-ATAAGCTTCCTGTTACATG
1 GCTCGACATAAGCTTCCGGTTACATG
* * *
23325593 GCTC-ACTTGAGCTTCCGGTTATATG
1 GCTCGACATAAGCTTCCGGTTACATG
23325618 GCTCGA
1 GCTCGA
23325624 GAGAGTGCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
24 1 0.04
25 23 0.92
26 1 0.04
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (26 bp):
GCTCGACATAAGCTTCCGGTTACATG
Found at i:23334186 original size:204 final size:204
Alignment explanation
Indices: 23333836--23334440 Score: 1192
Period size: 204 Copynumber: 3.0 Consensus size: 204
23333826 CGACACTTTT
23333836 GAAAAATTTATATTTCTGTTCTATTAATATGTAACAAATATCTGTCGGCTTCAATGGTTATGTGT
1 GAAAAATTTATATTTCTGTTCTATTAATATGTAACAAATATCTGTCGGCTTCAATGGTTATGTGT
*
23333901 TTTGGGCATTGTGAGAGGTCTCAAGTTCAAGCCAGGGCTTGGGAAAATTTTGGGTTCTTTTAGAT
66 TTTGGGCATTGTGAGAGGTCTCAAGTTCAAGCCAGGACTTGGGAAAATTTTGGGTTCTTTTAGAT
23333966 TTAAGCCCTATCTCTGTTCAGTAGATTTTTATTCGTTTGATTGTAAAAACATATCAGATTGGGCC
131 TTAAGCCCTATCTCTGTTCAGTAGATTTTTATTCGTTTGATTGTAAAAACATATCAGATTGGGCC
23334031 AGAACGCCC
196 AGAACGCCC
23334040 GAAAAATTTATATTTCTGTTCTATTAATATGTAACAAATATCTGTCGGCTTCAATGGTTATGTGT
1 GAAAAATTTATATTTCTGTTCTATTAATATGTAACAAATATCTGTCGGCTTCAATGGTTATGTGT
23334105 TTTGGGCATTGTGAGAGGTCTCAAGTTCAAGCCAGGACTTGGGAAAATTTTGGGTTCTTTTAGAT
66 TTTGGGCATTGTGAGAGGTCTCAAGTTCAAGCCAGGACTTGGGAAAATTTTGGGTTCTTTTAGAT
23334170 TTAAGCCCTATCTCTGTTCAGTAGATTTTTATTCGTTTGATTGTAAAAACATATCAGATTGGGCC
131 TTAAGCCCTATCTCTGTTCAGTAGATTTTTATTCGTTTGATTGTAAAAACATATCAGATTGGGCC
23334235 AGAACGCCC
196 AGAACGCCC
*
23334244 TAAAAATTTATATTTCTGTTCTATTAATATGTAACAAATATCTGTCGGCTTCAATGGTTATGTGT
1 GAAAAATTTATATTTCTGTTCTATTAATATGTAACAAATATCTGTCGGCTTCAATGGTTATGTGT
23334309 TTTGGGCATTGTGAGAGGTCTCAAGTTCAAGCCAGGACTTGGGAAAATTTTGGGTTCTTTTAGAT
66 TTTGGGCATTGTGAGAGGTCTCAAGTTCAAGCCAGGACTTGGGAAAATTTTGGGTTCTTTTAGAT
23334374 TTAAGCCCTATCTCTGTTCAGTAGATTTTTATTCGTTTGATTGTAAAAACATATCAGATTGGGCC
131 TTAAGCCCTATCTCTGTTCAGTAGATTTTTATTCGTTTGATTGTAAAAACATATCAGATTGGGCC
23334439 AG
196 AG
23334441 CTAGTCTAGT
Statistics
Matches: 399, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
204 399 1.00
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (204 bp):
GAAAAATTTATATTTCTGTTCTATTAATATGTAACAAATATCTGTCGGCTTCAATGGTTATGTGT
TTTGGGCATTGTGAGAGGTCTCAAGTTCAAGCCAGGACTTGGGAAAATTTTGGGTTCTTTTAGAT
TTAAGCCCTATCTCTGTTCAGTAGATTTTTATTCGTTTGATTGTAAAAACATATCAGATTGGGCC
AGAACGCCC
Found at i:23335427 original size:31 final size:31
Alignment explanation
Indices: 23335377--23335442 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
23335367 AACCCTTCTT
* * *
23335377 GCATTAAATCCAACTAAAAACAGCAAATATA
1 GCATGAAATCCAACCAAAAACAACAAATATA
* *
23335408 GCATGAAATCGAACCAAAAACAACAAATGTA
1 GCATGAAATCCAACCAAAAACAACAAATATA
23335439 GCAT
1 GCAT
23335443 AAAAAATACA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.53, C:0.20, G:0.11, T:0.17
Consensus pattern (31 bp):
GCATGAAATCCAACCAAAAACAACAAATATA
Found at i:23336179 original size:13 final size:14
Alignment explanation
Indices: 23336153--23336181 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
23336143 ACTAAAGAAG
23336153 AATTAAACCATTAT
1 AATTAAACCATTAT
23336167 AATTAAA-CATTAT
1 AATTAAACCATTAT
23336180 AA
1 AA
23336182 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:23338914 original size:15 final size:15
Alignment explanation
Indices: 23338891--23338922 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
23338881 AAATAATAAT
23338891 TTATATATATTTATC
1 TTATATATATTTATC
*
23338906 TTATTTATATTTATC
1 TTATATATATTTATC
23338921 TT
1 TT
23338923 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:23338955 original size:7 final size:7
Alignment explanation
Indices: 23338945--23339016 Score: 72
Period size: 7 Copynumber: 10.3 Consensus size: 7
23338935 CCAAAATTAT
23338945 ACCCTAA
1 ACCCTAA
*
23338952 ACCCGAA
1 ACCCTAA
*
23338959 ACCTTAA
1 ACCCTAA
*
23338966 ACCTTAA
1 ACCCTAA
* *
23338973 ACTCAAA
1 ACCCTAA
* *
23338980 ATCCTAC
1 ACCCTAA
*
23338987 ACCTTAA
1 ACCCTAA
23338994 ACCCTAA
1 ACCCTAA
23339001 ACCCTAA
1 ACCCTAA
23339008 ACCCTAA
1 ACCCTAA
23339015 AC
1 AC
23339017 TCACTACACC
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
7 51 1.00
ACGTcount: A:0.43, C:0.38, G:0.01, T:0.18
Consensus pattern (7 bp):
ACCCTAA
Found at i:23339098 original size:39 final size:39
Alignment explanation
Indices: 23339055--23339129 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
23339045 CGTTTGAATG
23339055 AAAAACGCCACTAAAGAAT-GAGTATTAGCAGCACTTCTC
1 AAAAACGCCACTAAAG-ATGGAGTATTAGCAGCACTTCTC
** *
23339094 AAAAACGCTGCTAAAGATGGAGTATTAGCTGCACTT
1 AAAAACGCCACTAAAGATGGAGTATTAGCAGCACTT
23339130 TTTTTTAAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 2 0.06
39 30 0.94
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.23
Consensus pattern (39 bp):
AAAAACGCCACTAAAGATGGAGTATTAGCAGCACTTCTC
Found at i:23339365 original size:115 final size:114
Alignment explanation
Indices: 23339217--23339457 Score: 401
Period size: 115 Copynumber: 2.1 Consensus size: 114
23339207 GCGTTTTTCA
* *
23339217 AAAAACGCCGCAAAAGAATTTTGCAAAATGACGTTGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
1 AAAAACGCCGCAAAAGAATTTTGCAAAACGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
23339282 GGCGCTTTTCAAAAACGCCGCTAAAGATCAAGTACTAGCGGCGCTTTTTT
66 GGCGCTTTTCAAAAACGCCGCTAAAGATCAAGTACTAGCGGC-CTTTTTT
* *
23339332 AAAAACACCGCAAAAGAATTTTTCAAAACGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
1 AAAAACGCCGCAAAAGAATTTTGCAAAACGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
* * *
23339397 GGCGCTTTTCAAAAACGCCGCTAAAGATCGAGTATTAGCGGCTTTTTTT
66 GGCGCTTTTCAAAAACGCCGCTAAAGATCAAGTACTAGCGGCCTTTTTT
23339446 AAGAAACGCCGC
1 AA-AAACGCCGC
23339458 TATAAGTATA
Statistics
Matches: 117, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
114 8 0.07
115 109 0.93
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30
Consensus pattern (114 bp):
AAAAACGCCGCAAAAGAATTTTGCAAAACGACGTCGTTTTGTATTGAGCTTTTAGTGGCTTTAGC
GGCGCTTTTCAAAAACGCCGCTAAAGATCAAGTACTAGCGGCCTTTTTT
Found at i:23339803 original size:21 final size:21
Alignment explanation
Indices: 23339778--23339837 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
23339768 GTTTAAAGGT
*
23339778 GGTTTAAGGGTTGGGGTTTAA
1 GGTTTAAGGGTTAGGGTTTAA
23339799 GGTTT-AGGTGTTAGGGTTTAA
1 GGTTTAAGG-GTTAGGGTTTAA
* *
23339820 GGGTTATGGGTTAAGGGT
1 GGTTTAAGGGTT-AGGGT
23339838 GAGGGGTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
20 3 0.09
21 23 0.70
22 7 0.21
ACGTcount: A:0.18, C:0.00, G:0.43, T:0.38
Consensus pattern (21 bp):
GGTTTAAGGGTTAGGGTTTAA
Found at i:23339816 original size:14 final size:14
Alignment explanation
Indices: 23339799--23339905 Score: 51
Period size: 14 Copynumber: 7.5 Consensus size: 14
23339789 TGGGGTTTAA
23339799 GGTTTAGGTGTTAG
1 GGTTTAGGTGTTAG
23339813 GGTTTAAGG-GTTATG
1 GGTTT-AGGTGTTA-G
* *
23339828 GGTTAAGG-GTGAGG
1 GGTTTAGGTGTTA-G
*
23339842 GGTTTATGGT-TCAG
1 GGTTTA-GGTGTTAG
* *
23339856 GGTTTATGTTTTAG
1 GGTTTAGGTGTTAG
* *
23339870 GATTTAAAGT-TTAG
1 GGTTT-AGGTGTTAG
* *
23339884 GGATTAGGAGTTTAG
1 GGTTTAGGTG-TTAG
23339899 GGTTTAG
1 GGTTTAG
23339906 ANTTGAGCAA
Statistics
Matches: 71, Mismatches: 14, Indels: 15
0.71 0.14 0.15
Matches are distributed among these distances:
13 4 0.06
14 42 0.59
15 25 0.35
ACGTcount: A:0.21, C:0.01, G:0.38, T:0.40
Consensus pattern (14 bp):
GGTTTAGGTGTTAG
Found at i:23342297 original size:48 final size:48
Alignment explanation
Indices: 23342245--23342468 Score: 274
Period size: 48 Copynumber: 4.7 Consensus size: 48
23342235 GTCGAGGTCA
* * *
23342245 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTTTCAATACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCG
* * * * * *
23342293 ATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATGTCAAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCG
* * * *
23342341 ATGCCATGTCCCGGACATGGTTTTACACTAGCTCTCGTCTCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCG
*
23342389 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--AT-AATGTGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAA--T-GCCG
23342437 ATGCCATGTCCCAGACATGGTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
23342469 ACACATATTA
Statistics
Matches: 151, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
45 2 0.01
46 1 0.01
47 1 0.01
48 147 0.97
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATCAATGCCG
Found at i:23342371 original size:96 final size:96
Alignment explanation
Indices: 23342207--23342468 Score: 373
Period size: 96 Copynumber: 2.7 Consensus size: 96
23342197 GATACCATAT
* * *
23342207 CCAGATATGGTCTTACACTGGCTCACATGTCGAGGTCAATGCCATGTCCCAAACATGGTCTTACA
1 CCAGACATGGTCTTACACTGGCTCACATGTCGAGGTCGATGCCATGTCCCAGACATGGTCTTACA
* *
23342272 CTAGCTCTCGTTTCAATACCGATGCCATGTC
66 CTAGCTCTCGTCTCAATACCAATGCCATGTC
* * * * *
23342303 CCAGACATGGTCTTACATTGGCTCACATGTCAAGGCCGATGCCATGTCCCGGACATGGTTTTACA
1 CCAGACATGGTCTTACACTGGCTCACATGTCGAGGTCGATGCCATGTCCCAGACATGGTCTTACA
*
23342368 CTAGCTCTCGTCTCAATGCCAATGCCATGTC
66 CTAGCTCTCGTCTCAATACCAATGCCATGTC
* * * *
23342399 CCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGTCGATGCCATGTCCCAGACATGGTCTTAC
1 CCAGACATGGTCTTACACTGGCTCACAT-GTCGAGGTCGATGCCATGTCCCAGACATGGTCTTAC
23342463 ACTAGC
65 ACTAGC
23342469 ACACATATTA
Statistics
Matches: 145, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
96 144 0.99
97 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (96 bp):
CCAGACATGGTCTTACACTGGCTCACATGTCGAGGTCGATGCCATGTCCCAGACATGGTCTTACA
CTAGCTCTCGTCTCAATACCAATGCCATGTC
Found at i:23347439 original size:93 final size:93
Alignment explanation
Indices: 23347327--23347684 Score: 689
Period size: 93 Copynumber: 3.8 Consensus size: 93
23347317 CGCCCATAAG
* * *
23347327 CGAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23347392 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
23347420 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23347485 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
23347513 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23347578 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
23347606 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
23347671 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
23347685 TCAACCATCC
Statistics
Matches: 262, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 262 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:23347442 original size:47 final size:49
Alignment explanation
Indices: 23347320--23347684 Score: 391
Period size: 46 Copynumber: 7.8 Consensus size: 49
23347310 TGTAACCCGC
* * *
23347320 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-G--GCCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
23347366 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
23347416 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
23347459 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
23347509 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
23347552 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
23347602 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
23347645 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
23347685 TCAACCATCC
Statistics
Matches: 268, Mismatches: 21, Indels: 57
0.77 0.06 0.16
Matches are distributed among these distances:
42 6 0.02
43 12 0.04
44 6 0.02
45 6 0.02
46 119 0.44
47 88 0.33
48 6 0.02
49 8 0.03
50 11 0.04
51 6 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:23349216 original size:20 final size:20
Alignment explanation
Indices: 23349191--23349230 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
23349181 TTAGGTTGAC
23349191 TTAGTCACTTTTTCAGCGAA
1 TTAGTCACTTTTTCAGCGAA
23349211 TTAGTCACTTTTTCAGCGAA
1 TTAGTCACTTTTTCAGCGAA
23349231 AAAATTGCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (20 bp):
TTAGTCACTTTTTCAGCGAA
Found at i:23350527 original size:24 final size:24
Alignment explanation
Indices: 23350480--23350644 Score: 221
Period size: 24 Copynumber: 7.0 Consensus size: 24
23350470 GCTTTATCAT
*
23350480 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
23350505 ATAACTGGGGCA-AAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
*
23350528 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
23350551 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
23350575 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
23350599 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
23350622 ATAACTGGGGCGTAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
23350645 TCACTTCCTC
Statistics
Matches: 126, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
23 57 0.45
24 61 0.48
25 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:23350596 original size:71 final size:70
Alignment explanation
Indices: 23350480--23350644 Score: 260
Period size: 71 Copynumber: 2.3 Consensus size: 70
23350470 GCTTTATCAT
* *
23350480 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTTATAACTAGGGCATAAG
1 ATAACTGG-GGCGTAAGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTGATAACTAGGGCATAAG
23350544 CCCTTTA
64 CCCTTTA
* *
23350551 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCGTAAGCCCTTTTAATAACTGGGGCA-AAGCCCTTTTGATAACTAGGGCATAAGC
23350616 CCTTTA
65 CCTTTA
23350622 ATAACTGGGGCGTAAGCCCTTTT
1 ATAACTGGGGCGTAAGCCCTTTT
23350645 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
70 21 0.24
71 67 0.76
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (70 bp):
ATAACTGGGGCGTAAGCCCTTTTAATAACTGGGGCAAAGCCCTTTTGATAACTAGGGCATAAGCC
CTTTA
Found at i:23350719 original size:20 final size:20
Alignment explanation
Indices: 23350694--23350760 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
23350684 TTATGAATAC
23350694 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
23350714 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
23350734 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
23350754 ACCATGT
1 ATCATGT
23350761 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:23350725 original size:11 final size:11
Alignment explanation
Indices: 23350694--23350749 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
23350684 TTATGAATAC
23350694 ATCATGTGCAT
1 ATCATGTGCAT
*
23350705 ATCA--TACAT
1 ATCATGTGCAT
23350714 ATCATGTGCAT
1 ATCATGTGCAT
*
23350725 ATCA--TACAT
1 ATCATGTGCAT
*
23350734 GTCATGTGCAT
1 ATCATGTGCAT
23350745 ATCAT
1 ATCAT
23350750 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:23358706 original size:24 final size:24
Alignment explanation
Indices: 23358659--23358823 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
23358649 GCTTTATCAT
*
23358659 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
23358684 ATAACTGGGGCA-AAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
23358707 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
23358730 ATAACTGGGGCGTAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
23358754 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
23358778 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
23358801 ATAACTGGGGCGTAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
23358824 TCACTTCCCC
Statistics
Matches: 128, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
23 59 0.46
24 61 0.48
25 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:23358763 original size:47 final size:46
Alignment explanation
Indices: 23358680--23358822 Score: 216
Period size: 47 Copynumber: 3.1 Consensus size: 46
23358670 CCTAGCCTCT
* *
23358680 TTTAATAACTGGGGCAAAGCCCTTTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCTAAGCCCTTTTAATAACTGGGGCATAAGCCC
23358726 TTTAATAACTGGGGCGTAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGC-TAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
23358773 TTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCC
1 -TTTAATAACTGGGGC-TAAGCCCTTTTAATAACTGGGGCATAAGCCC
23358820 TTT
1 TTT
23358823 TTCACTTCCC
Statistics
Matches: 90, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
46 18 0.20
47 51 0.57
48 21 0.23
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (46 bp):
TTTAATAACTGGGGCTAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:23358776 original size:71 final size:70
Alignment explanation
Indices: 23358659--23358823 Score: 278
Period size: 71 Copynumber: 2.3 Consensus size: 70
23358649 GCTTTATCAT
* *
23358659 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTTATAACTGGGGCATAAG
1 ATAACTGG-GGCGTAAGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTGATAACTGGGGCATAAG
23358723 CCCTTTA
64 CCCTTTA
23358730 ATAACTGGGGCGTAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCGTAAGCCCTTTTAATAACTGGGGCA-AAGCCCTTTTGATAACTGGGGCATAAGC
23358795 CCTTTA
65 CCTTTA
23358801 ATAACTGGGGCGTAAGCCCTTTT
1 ATAACTGGGGCGTAAGCCCTTTT
23358824 TCACTTCCCC
Statistics
Matches: 90, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
70 22 0.24
71 68 0.76
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (70 bp):
ATAACTGGGGCGTAAGCCCTTTTAATAACTGGGGCAAAGCCCTTTTGATAACTGGGGCATAAGCC
CTTTA
Found at i:23358898 original size:20 final size:20
Alignment explanation
Indices: 23358873--23358939 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
23358863 TTATGAATAC
*
23358873 ATCATGGGCATATCATACAT
1 ATCATGTGCATATCATACAT
23358893 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
23358913 GTCATGTGCAAATCATACAT
1 ATCATGTGCATATCATACAT
*
23358933 ACCATGT
1 ATCATGT
23358940 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.31
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:23359008 original size:25 final size:25
Alignment explanation
Indices: 23358976--23359023 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
23358966 ATACATAAAC
* *
23358976 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
23359001 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
23359024 AATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:23363236 original size:126 final size:129
Alignment explanation
Indices: 23363023--23363675 Score: 537
Period size: 141 Copynumber: 4.8 Consensus size: 129
23363013 GACAAAGCTG
* * * * * *
23363023 ACTCTTATTTAAGCGTTGCCTGAAGCATGCATATCCCAACCCGTATAGAAAGAGTTGACCAAAGC
1 ACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCATATACAAAGAGTTGGCCAAAGC
* * * *
23363088 GTATGTCGGCAAGTCTATCCCAACACTT-TGGAAAA-TGTCTTCTTAGGACTGGAC-AAAGCCA
66 GTATGTTGGCAAGTCTATCCCAACACTTATGGAAAAGTGTCATCTTAGGGCTAGACAAAAGCCA
* * * * *
23363149 ACTCTTATTGAAGCGTTGGCTTAGGCATGCATACCCCAACCC-TCATACAAAGAGTTGGCCAGAG
1 ACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCAT-ATACAAAGAGTTGGCCAAAG
* * *
23363213 CGTATGTTGACAAGTCTATCCCAAGACTTAGGAAAATGTCGCCCAAAAGTGTCGTCTTAGGGCTA
65 CGTATGTTGGCAAGTCTATCCCAACACTT------ATG--G---AAAAGTGTCATCTTAGGGCTA
23363278 GACAAAAGCCA
119 GACAAAAGCCA
* * * *
23363289 ACTCTTATTTAAGTGTTGTCTTAGGCATACATATCTCAACCCATATGCAAAGAGTTGGCCAAAGC
1 ACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCATATACAAAGAGTTGGCCAAAGC
* **
23363354 GTATGTTGGCAAGTCTATCCCATTACTTAGGAAATTATCACCCTAAAAGTGTCATCTTAGGGCTA
66 GTATGTTGGCAAGTCTATCCCA--AC------ACTTAT----GGAAAAGTGTCATCTTAGGGCTA
23363419 GACAAAAGCCA
119 GACAAAAGCCA
* * *
23363430 ACTTTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAAA
1 ACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCATATACAAAGAGTTGGCC-AAAG
* *
23363495 CGTATGTTGGCAAGTCTATCCTAACACTTAGGAAAGTGCCGCCCCAAAAGTGTCATCTTAGGACT
65 CGTATGTTGGCAAGTCTATCCCAACACTT-----A-TG--G----AAAAGTGTCATCTTAGGGCT
* *
23363560 AGTC-AAATCCA
118 AGACAAAAGCCA
* * * ** * * *
23363571 ACTTTTATTTAAGCATTGCCTTAGGCATGCATATTACAACCCTTATACAAAAAGTTGGCCAAAGT
1 ACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCATATACAAAGAGTTGGCCAAAGC
* * *
23363636 TTATGTTGGCCAGTCTATCCCAATACTTA-GG-AAAGTGTCA
66 GTATGTTGGCAAGTCTATCCCAACACTTATGGAAAAGTGTCA
23363676 CCTCAAATTT
Statistics
Matches: 433, Mismatches: 53, Indels: 82
0.76 0.09 0.14
Matches are distributed among these distances:
125 1 0.00
126 89 0.21
131 1 0.00
133 3 0.01
134 3 0.01
135 2 0.00
138 4 0.01
139 17 0.04
140 113 0.26
141 147 0.34
142 50 0.12
148 3 0.01
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (129 bp):
ACTCTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCCATATACAAAGAGTTGGCCAAAGC
GTATGTTGGCAAGTCTATCCCAACACTTATGGAAAAGTGTCATCTTAGGGCTAGACAAAAGCCA
Found at i:23363300 original size:266 final size:267
Alignment explanation
Indices: 23362748--23363675 Score: 810
Period size: 265 Copynumber: 3.4 Consensus size: 267
23362738 CATACTATTG
* * * * * *
23362748 GACAAAGCCAACTCTTATTTAAGTGTTACCTTAGACATGCATAT-ACCAACTCTTATAAAAAGAG
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCA-CAACCCATATAGAAAGAG
** * ** * * *** * * * *
23362812 TTGGCCAAAGTATATGTTGACAAGTCTATCTTAATAC-TTAGAAAAGTGTTGGCATAATG-TTGG
65 TTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTTGGAAAA-TGTCATC-TTAGGACTAG
* * * * * *** * * * * *
23362875 AC-AATGCCGACTCTTATTTAAGCATTGCCTTAAGCATGGGTATCACAA-CTTTATACAAAGTGT
128 ACAAAAGCCAACTCTTATTGAAGCGTTGCCTTAGGCATACATACCCCAACCCTCATACAAAGAGT
* * * * * *
23362938 TGGCCAAAGTGTATGTTGGCAAATCTATCCCAACATTTAGGAAATTGTCGCCCCAAAAGTGTAGG
193 TGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAATGTCGCCCCAAAAGTGTCGT
* * * *
23363003 CATAGTGTTG
258 CTTAGGGCTA
** * * * *
23363013 GACAAAGCTGACTCTTATTTAAGCGTTGCCTGAAGCATGCATATCCCAACCCGTATAGAAAGAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCACAACCCATATAGAAAGAGT
* * * *
23363078 TGACCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTTGGAAAATGTCTTCTTAGGACTGGAC-
66 TGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTTGGAAAATGTCATCTTAGGACTAGACA
* *
23363142 AAAGCCAACTCTTATTGAAGCGTTGGCTTAGGCATGCATACCCCAACCCTCATACAAAGAGTTGG
131 AAAGCCAACTCTTATTGAAGCGTTGCCTTAGGCATACATACCCCAACCCTCATACAAAGAGTTGG
* * *
23363207 CCAGAGCGTATGTTGACAAGTCTATCCCAAGACTTAGGAAAATGTCG-CCCAAAAGTGTCGTCTT
196 CCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAATGTCGCCCCAAAAGTGTCGTCTT
23363271 AGGGCTA
261 AGGGCTA
* * * *
23363278 GACAAAAGCCAACTCTTATTTAAGTGTTGTCTTAGGCATACATATCTCAACCCATAT-GCAAAGA
1 GAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCACAACCCATATAG-AAAGA
* **
23363342 GTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCATTACTTAGGAAATTATCACCCTAAAAGTGTC
64 GTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCA--AC------ACTT-T----GGAAAA-TGTC
* * * *
23363407 ATCTTAGGGCTAGACAAAAGCCAACTTTTATTTAAGCGTTGCCTTAGGCATACATATCCCAACCC
115 ATCTTAGGACTAGACAAAAGCCAACTCTTATTGAAGCGTTGCCTTAGGCATACATACCCCAACCC
* * * * *
23363472 TTATACAAAGAGTTGGCCAAAAACGTATGTTGGCAAGTCTATCCTAACACTTAGGAAAGTGCCGC
180 TCATACAAAGAGTTGGCC-AAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAATGTCGC
* *
23363537 CCCAAAAGTGTCATCTTAGGACTA
244 CCCAAAAGTGTCGTCTTAGGGCTA
* * * * * * * *
23363561 GTCAAATCCAACTTTTATTTAAGCATTGCCTTAGGCATGCATATTACAACCCTTATACAAAAAGT
1 GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCACAACCCATATAGAAAGAGT
** * * * *
23363626 TGGCCAAAGTTTATGTTGGCCAGTCTATCCCAATACTTAGGAAAGTGTCA
66 TGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTTGGAAAATGTCA
23363676 CCTCAAATTT
Statistics
Matches: 534, Mismatches: 105, Indels: 45
0.78 0.15 0.07
Matches are distributed among these distances:
264 3 0.01
265 148 0.28
266 143 0.27
268 7 0.01
269 3 0.01
274 6 0.01
275 1 0.00
279 4 0.01
280 17 0.03
281 61 0.11
282 117 0.22
283 24 0.04
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (267 bp):
GACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCACAACCCATATAGAAAGAGT
TGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTTGGAAAATGTCATCTTAGGACTAGACA
AAAGCCAACTCTTATTGAAGCGTTGCCTTAGGCATACATACCCCAACCCTCATACAAAGAGTTGG
CCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAATGTCGCCCCAAAAGTGTCGTCTT
AGGGCTA
Found at i:23363330 original size:140 final size:139
Alignment explanation
Indices: 23363119--23363700 Score: 707
Period size: 140 Copynumber: 4.2 Consensus size: 139
23363109 AACACTTTGG
* * * * * *
23363119 AAAA-TGTCTTCTTAGGACTGGACAAAGCCAACTCTTATTGAAGCGTTGGCTTAGGCATGCATAC
1 AAAAGTGTCATCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATAT
* * * *
23363183 CCCAACCCTCATACAAAGAGTTGGCCAGAGCGTATGTTGACAAGTCTATCCCAAGACTTAGGAAA
66 CCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAAA
* *
23363248 ATGTCGCCC
131 GTGTCACCC
* * * *
23363257 AAAAGTGTCGTCTTAGGGCTAGACAAAAGCCAACTCTTATTTAAGTGTTGTCTTAGGCATACATA
1 AAAAGTGTCATCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATA
* * * *
23363322 TCTCAACCCATATGCAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCATTACTTAGGAA
65 TCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAA
* *
23363387 ATTATCACCC
130 AGTGTCACCC
* *
23363397 TAAAAGTGTCATCTTAGGGCTAGACAAAAGCCAACTTTTATTTAAGCGTTGCCTTAGGCATACAT
1 -AAAAGTGTCATCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACAT
* * *
23363462 ATCCCAACCCTTATACAAAGAGTTGGCCAAAAACGTATGTTGGCAAGTCTATCCTAACACTTAGG
64 ATCCCAACCCTTATACAAAGAGTTGGCC-AAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGG
* *
23363527 AAAGTGCCGCCCC
128 AAAGTGTC-ACCC
* * * * *
23363540 AAAAGTGTCATCTTAGGACTAGTCAAATCCAACTTTTATTTAAGCATTGCCTTAGGCATGCATAT
1 AAAAGTGTCATCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATAT
** * ** *
23363605 TACAACCCTTATACAAAAAGTTGGCCAAAGTTTATGTTGGCCAGTCTATCCCAATACTTAGGAAA
66 CCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAAA
23363670 GTGTCACCTC
131 GTGTCACC-C
** * *
23363680 AAATTTGTCGTCTTAAGACTA
1 AAAAGTGTCATCTTAGGACTA
23363701 TTTTGTTACA
Statistics
Matches: 384, Mismatches: 54, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
138 4 0.01
139 18 0.05
140 154 0.40
141 146 0.38
142 59 0.15
143 3 0.01
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.28
Consensus pattern (139 bp):
AAAAGTGTCATCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATAT
CCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAAA
GTGTCACCC
Found at i:23363459 original size:141 final size:139
Alignment explanation
Indices: 23363119--23363674 Score: 700
Period size: 141 Copynumber: 4.0 Consensus size: 139
23363109 AACACTTTGG
* * * * * *
23363119 AAAA-TGTCTTCTTAGGACTGGACAAAGCCAACTCTTATTGAAGCGTTGGCTTAGGCATGCATAC
1 AAAAGTGTCATCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATAT
* * * *
23363183 CCCAACCCTCATACAAAGAGTTGGCCAGAGCGTATGTTGACAAGTCTATCCCAAGACTTAGGAAA
66 CCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAAA
23363248 ATGTCGCCC
131 ATGTCGCCC
* * * *
23363257 AAAAGTGTCGTCTTAGGGCTAGACAAAAGCCAACTCTTATTTAAGTGTTGTCTTAGGCATACATA
1 AAAAGTGTCATCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATA
* * * *
23363322 TCTCAACCCATATGCAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCATTACTTAGGAA
65 TCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAA
* * *
23363387 ATTATCACCC
130 AATGTCGCCC
* *
23363397 TAAAAGTGTCATCTTAGGGCTAGACAAAAGCCAACTTTTATTTAAGCGTTGCCTTAGGCATACAT
1 -AAAAGTGTCATCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACAT
* * *
23363462 ATCCCAACCCTTATACAAAGAGTTGGCCAAAAACGTATGTTGGCAAGTCTATCCTAACACTTAGG
64 ATCCCAACCCTTATACAAAGAGTTGGCC-AAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGG
* *
23363527 AAAGTGCCGCCCC
128 AAAATGTCG-CCC
* * * * *
23363540 AAAAGTGTCATCTTAGGACTAGTCAAATCCAACTTTTATTTAAGCATTGCCTTAGGCATGCATAT
1 AAAAGTGTCATCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATAT
** * ** *
23363605 TACAACCCTTATACAAAAAGTTGGCCAAAGTTTATGTTGGCCAGTCTATCCCAATACTTAGGAAA
66 CCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAAA
*
23363670 GTGTC
131 ATGTC
23363675 ACCTCAAATT
Statistics
Matches: 364, Mismatches: 49, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
138 4 0.01
139 16 0.04
140 136 0.37
141 146 0.40
142 59 0.16
143 3 0.01
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (139 bp):
AAAAGTGTCATCTTAGGACTAGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATACATAT
CCCAACCCTTATACAAAGAGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAATACTTAGGAAA
ATGTCGCCC
Found at i:23366240 original size:11 final size:11
Alignment explanation
Indices: 23366226--23366301 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
23366216 GATAATCACT
23366226 TTAATATTAAA
1 TTAATATTAAA
23366237 TTAATA--AAA
1 TTAATATTAAA
*
23366246 -TACTATTAAA
1 TTAATATTAAA
*
23366256 ATAAGTATTAAA
1 TTAA-TATTAAA
23366268 TTAA-ATTTAATA
1 TTAATA-TTAA-A
23366280 TTAAACTATTAAA
1 TT-AA-TATTAAA
*
23366293 ATAATATTA
1 TTAATATTA
23366302 TTTTTTGGAA
Statistics
Matches: 52, Mismatches: 4, Indels: 18
0.70 0.05 0.24
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 4 0.08
11 17 0.33
12 15 0.29
13 4 0.08
14 4 0.08
15 1 0.02
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:23366254 original size:25 final size:25
Alignment explanation
Indices: 23366200--23366266 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
23366190 AAACATTAAA
*
23366200 TTTAATATAATATTAAGATAATCAC
1 TTTAATATAATATTAAGAAAATCAC
*
23366225 TTTAATATTAA-ATTAATAAAAT-AC
1 TTTAATA-TAATATTAAGAAAATCAC
*
23366249 TATTAAAATAAGTATTAA
1 T-TTAATATAA-TATTAA
23366267 ATTAAATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
24 6 0.17
25 21 0.60
26 8 0.23
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.40
Consensus pattern (25 bp):
TTTAATATAATATTAAGAAAATCAC
Found at i:23367851 original size:79 final size:81
Alignment explanation
Indices: 23367742--23367924 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
23367732 TACTCGTTCA
* *
23367742 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
23367805 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
23367822 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
23367885 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
23367901 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
23367925 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:23367924 original size:40 final size:40
Alignment explanation
Indices: 23367721--23367924 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
23367711 CGGAATTTAA
** *
23367721 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23367761 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23367801 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23367840 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
23367880 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
23367920 CCGGA
1 CCGGA
23367925 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:23381742 original size:27 final size:26
Alignment explanation
Indices: 23381702--23381816 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
23381692 AGCATGGCTG
* * *
23381702 CCAGAACATATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
23381728 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
23381756 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
23381783 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
23381810 CCAGAAC
1 CCAGAAC
23381817 GCTACCTCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.06
27 57 0.72
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:23381761 original size:54 final size:54
Alignment explanation
Indices: 23381702--23381816 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
23381692 AGCATGGCTG
* *
23381702 CCAGAACATATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
23381756 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
23381810 CCAGAAC
1 CCAGAAC
23381817 GCTACCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:23383470 original size:26 final size:26
Alignment explanation
Indices: 23383434--23383543 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
23383424 CATGAAATTC
23383434 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
23383460 TTATCATGAAACATTTACCTAACCCT
1 TTATCATGAAACATTTACCTAACCCA
* *
23383486 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
23383512 TTATCATTG-AACATTTACCTAACCTA
1 TTATCA-TGAAACATTTACCTAACCCA
23383538 TTATCA
1 TTATCA
23383544 ATTTGTACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 77 0.97
27 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:23385851 original size:11 final size:11
Alignment explanation
Indices: 23385837--23385876 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
23385827 AACAAGTTGA
23385837 CAACATGCTTG
1 CAACATGCTTG
23385848 CAACATG-TTG
1 CAACATGCTTG
23385858 ACAACATGCTTG
1 -CAACATGCTTG
23385870 CAACATG
1 CAACATG
23385877 TTGACTGCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 3 0.11
11 21 0.78
12 3 0.11
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (11 bp):
CAACATGCTTG
Found at i:23385857 original size:22 final size:22
Alignment explanation
Indices: 23385827--23385881 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
23385817 TGTCATGGGA
*
23385827 AACAAGTTGACAACATGCTTGC
1 AACATGTTGACAACATGCTTGC
23385849 AACATGTTGACAACATGCTTGC
1 AACATGTTGACAACATGCTTGC
23385871 AACATGTTGAC
1 AACATGTTGAC
23385882 TGCTTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (22 bp):
AACATGTTGACAACATGCTTGC
Found at i:23386182 original size:35 final size:35
Alignment explanation
Indices: 23386098--23386820 Score: 223
Period size: 37 Copynumber: 19.8 Consensus size: 35
23386088 GACAAAGATC
* ** *
23386098 TATCCCAACCTTTTTAAGTTTGCCTTAGGCGTGTT
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
23386133 TA-CCCTAACCTTTTTAAGGTTGCCTTAAACGGGTT
1 TATCCC-AACCTTTTTAAGGTTGCCTTAAACGGGTT
* * * ** *
23386168 TATCCCAGCTTTTTTTAA-GTTGCATTGGAAA-AAGTG
1 TATCCCAAC-CTTTTTAAGGTTGCCTT--AAACGGGTT
* * ** ** *
23386204 TATCTCAACGTTTTTAAGGTTGTTTTAAATAGGTC
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
* * * ** * *
23386239 TATCACAACATTTTTAAGGTTGTCTTAGGCAGGTC
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
* * * * *
23386274 AATCCCAACCTTTTTTAAAAGTTTCCTTAGACAAGGTT
1 TATCCCAACC-TTTTT-AAGGTTGCCTTAAAC-GGGTT
* * * * ** *
23386312 TATCCCAACATTTTTAAGGTTACCTTAGATGAATC
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
* * ** *
23386347 TATCCCAACCTTTTTAAGGTTGCTTTAGACAAGTC
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
* * *
23386382 TATCCCAACCTTTTTTGAAGGTTGCCTTAGACAAGGTC
1 TATCCCAACC-TTTTT-AAGGTTGCCTTAAAC-GGGTT
* * * *
23386420 TATCCCAACATTTTTAAAAGGTTGCCTTAGACTGGTC
1 TATCCCAACCTTTTT--AAGGTTGCCTTAAACGGGTT
* * * *** **
23386457 TATTCCAACATTTTTAAAAGGTTGCCTTAGATAAGCC
1 TATCCCAACCTTTTT--AAGGTTGCCTTAAACGGGTT
* * * * ****
23386494 TATCCTAACATTTTTTAAACGTTGCCTTAGATAAATT
1 TATCCCAAC-CTTTTT-AAGGTTGCCTTAAACGGGTT
* * * * *
23386531 CTATCCCAACTTTTTTAAAAGGTTACCTTAGACTGGTC
1 -TATCCCAACCTTTTT--AAGGTTGCCTTAAACGGGTT
* *
23386569 TATCCCAACCTTTTTTAAAGGTTGCCTTAAACAAGGTC
1 TATCCCAACC-TTTTT-AAGGTTGCCTTAAAC-GGGTT
* * * * ***
23386607 TATACCAATCTATTTAAGGTTACCTTAAA-TAATT
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
* * * * *
23386641 ATATCCCAATCTTTTTTAAAGGTTTCCTTAGACAAGGTC
1 -TATCCCAA-CCTTTTT-AAGGTTGCCTTAAAC-GGGTT
* ** * * *
23386680 TATCTCAAATTTTTTAAATGTTGCCTTAGATA-AGGTC
1 TATCCCAACCTTTTT-AAGGTTGCCTTA-A-ACGGGTT
* ** * * *
23386717 TATCCCAACATTTTTAAAAAGGTTATCTTAGACTGGTC
1 TATCCCAACCTTTTT---AAGGTTGCCTTAAACGGGTT
*
23386755 TATCCCAACCTTTTTAAGGTTGCCTTAGACGGGTT
1 TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
*
23386790 TATCACAACCTTTTTCAAAGGTTGGCCTTAA
1 TATCCCAACCTTTTT--AAGGTT-GCCTTAA
23386821 CTAGGTCTTT
Statistics
Matches: 543, Mismatches: 113, Indels: 61
0.76 0.16 0.09
Matches are distributed among these distances:
34 7 0.01
35 161 0.30
36 64 0.12
37 184 0.34
38 115 0.21
39 12 0.02
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (35 bp):
TATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTT
Found at i:23386319 original size:38 final size:38
Alignment explanation
Indices: 23386234--23386837 Score: 516
Period size: 37 Copynumber: 16.4 Consensus size: 38
23386224 TGTTTTAAAT
* * * *
23386234 AGGTCTATCACAA-CATTTTT-AAGGTTGTCTTAGGC-
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * *
23386269 AGGTCAATCCCAACCTTTTTTAAAAGTTTCCTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * *
23386307 AGGTTTATCCCAA-CATTTTT-AAGGTTACCTTAGATGA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGA-CA
*
23386344 A--TCTATCCCAACC-TTTTT-AAGGTTGCTTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
*
23386378 A-GTCTATCCCAACCTTTTTTGAAGGTTGCCTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* *
23386415 AGGTCTATCCCAACATTTTTAAAAGGTTGCCTTAGAC-
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * * *
23386452 TGGTCTATTCCAACATTTTTAAAAGGTTGCCTTAGATA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * * *
23386490 A-GCCTATCCTAACATTTTTTAAACGTTGCCTTAGATA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
** *
23386527 AATTCTATCCCAA-CTTTTTTAAAAGGTTACCTTAGAC-
1 AGGTCTATCCCAACCTTTTTT-AAAGGTTGCCTTAGACA
* *
23386564 TGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAAACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * * * *
23386602 AGGTCTATACCAATC-TATTT-AAGGTTACCTTAAATA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * *
23386638 A-TTATATCCCAATCTTTTTTAAAGGTTTCCTTAGACA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * *
23386675 AGGTCTATCTCAA-ATTTTTTAAATGTTGCCTTAGATA
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * **
23386712 AGGTCTATCCCAACATTTTTAAAAAGGTTATCTTAGAC-
1 AGGTCTATCCCAACCTTTTT-TAAAGGTTGCCTTAGACA
*
23386750 TGGTCTATCCCAACC-TTTTT-AAGGTTGCCTTAGAC-
1 AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
* * * * *
23386785 GGGTTTATCACAACCTTTTTCAAAGGTTGGCCTTA-ACT
1 AGGTCTATCCCAACCTTTTTTAAAGGTT-GCCTTAGACA
*
23386823 AGGTCTTTCCCAACC
1 AGGTCTATCCCAACC
23386838 CTTCAATAAG
Statistics
Matches: 465, Mismatches: 81, Indels: 43
0.79 0.14 0.07
Matches are distributed among these distances:
34 2 0.00
35 84 0.18
36 47 0.10
37 193 0.42
38 127 0.27
39 12 0.03
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (38 bp):
AGGTCTATCCCAACCTTTTTTAAAGGTTGCCTTAGACA
Found at i:23386834 original size:73 final size:74
Alignment explanation
Indices: 23386096--23386837 Score: 520
Period size: 73 Copynumber: 10.2 Consensus size: 74
23386086 GAGACAAAGA
* * *
23386096 TCTATCCCAACCTTTTT-AAGTTTGCCTTAGGC-GTGTTTA-CCCTAACC-TTTTT-AAGGTTGC
1 TCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAG-GTCTATCCC-AACCTTTTTTAAAGGTTGC
* *
23386156 CTTAAAC-GGG
64 CTTAGACTAGG
* * * * * * * * * * * **
23386166 TTTATCCCAGCTTTTTTTAA-GTTGCATTGGAAAAAGTGTATCTCAA-CGTTTTT-AAGGTTGTT
1 TCTATCCCAACCTTTTTAAAGGTTGCCTTAG-ACAGGTCTATCCCAACCTTTTTTAAAGGTTGCC
*
23386228 TTA-AATAGG
65 TTAGACTAGG
* * * * * * *
23386237 TCTATCACAACATTTTT-AAGGTTGTCTTAGGCAGGTCAATCCCAACCTTTTTTAAAAGTTTCCT
1 TCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCT
*
23386301 TAGACAAGG
66 TAGACTAGG
* * * * * *
23386310 TTTATCCCAACATTTTT-AAGGTTACCTTAGA-TGAATCTATCCCAACC-TTTTT-AAGGTTGCT
1 TCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAG-GTCTATCCCAACCTTTTTTAAAGGTTGCC
*
23386371 TTAGAC-AAG
65 TTAGACTAGG
* * *
23386380 TCTATCCCAACCTTTTTTGAAGGTTGCCTTAGACAAGGTCTATCCCAACATTTTTAAAAGGTTGC
1 TCTATCCCAACC-TTTTTAAAGGTTGCCTTAGAC-AGGTCTATCCCAACCTTTTTTAAAGGTTGC
23386445 CTTAGACT-GG
64 CTTAGACTAGG
* * * * * * * *
23386455 TCTATTCCAACATTTTTAAAAGGTTGCCTTAGATAAGCCTATCCTAACATTTTTTAAACGTTGCC
1 TCTATCCCAACCTTTTT-AAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAGGTTGCC
**
23386520 TTAGA-TAAAT
65 TTAGACT-AGG
* * *
23386530 TCTATCCCAACTTTTTTAAAAGGTTACCTTAGACTGGTCTATCCCAACCTTTTTTAAAGGTTGCC
1 TCTATCCCAACCTTTTT-AAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAGGTTGCC
* *
23386595 TTAAACAAGG
65 TTAGACTAGG
* * * * * * ** * * *
23386605 TCTATACCAATCTATTT-AAGGTTACCTTAAATAATTATATCCCAATCTTTTTTAAAGGTTTCCT
1 TCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCT
*
23386669 TAGACAAGG
66 TAGACTAGG
* ** * * * * **
23386678 TCTATCTCAAATTTTTTAAATGTTGCCTTAGATAAGGTCTATCCCAACATTTTTAAAAAGGTTAT
1 TCTATCCCAACCTTTTTAAAGGTTGCCTTAGA-CAGGTCTATCCCAACCTTTTT-TAAAGGTTGC
23386743 CTTAGACT-GG
64 CTTAGACTAGG
* * * *
23386753 TCTATCCCAACCTTTTT-AAGGTTGCCTTAGACGGGTTTATCACAACCTTTTTCAAAGGTTGGCC
1 TCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAGGTT-GCC
23386817 TTA-ACTAGG
65 TTAGACTAGG
*
23386826 TCTTTCCCAACC
1 TCTATCCCAACC
23386838 CTTCAATAAG
Statistics
Matches: 520, Mismatches: 125, Indels: 51
0.75 0.18 0.07
Matches are distributed among these distances:
70 46 0.09
71 68 0.13
72 39 0.08
73 145 0.28
74 65 0.12
75 143 0.28
76 14 0.03
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.38
Consensus pattern (74 bp):
TCTATCCCAACCTTTTTAAAGGTTGCCTTAGACAGGTCTATCCCAACCTTTTTTAAAGGTTGCCT
TAGACTAGG
Found at i:23392259 original size:43 final size:43
Alignment explanation
Indices: 23392193--23392418 Score: 290
Period size: 43 Copynumber: 5.3 Consensus size: 43
23392183 TTAAAAAAAA
* *
23392193 GCCGCTAAAGACCATGACTTTTAGAGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
23392236 GCTGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAAAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * *
23392279 GCCGCTAAAGACTAGGACCTTTAGCGGCGCTTTTCCCAAAAAT
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
** ** *
23392322 GCCGCTAAAGACCACAACCTTTAGCGGCGCTTTTTTCACAATC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * * *
23392365 GCCGCTAAAAACCATAACCTTTTGCGGCACTTTTCCCGCAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
23392408 GCCGCTAAAGA
1 GCCGCTAAAGA
23392419 ATATAACATT
Statistics
Matches: 158, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 158 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:23392501 original size:7 final size:7
Alignment explanation
Indices: 23392492--23392535 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
23392482 TTTTTTATTT
*
23392492 TTTAAAT
1 TTTAAAC
23392499 TTTAAA-
1 TTTAAAC
*
23392505 TTTGAAC
1 TTTAAAC
23392512 TTTAAAC
1 TTTAAAC
23392519 TTTAAAC
1 TTTAAAC
*
23392526 TTTATAC
1 TTTAAAC
23392533 TTT
1 TTT
23392536 TAAGGATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
6 5 0.15
7 28 0.85
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.52
Consensus pattern (7 bp):
TTTAAAC
Found at i:23394322 original size:18 final size:18
Alignment explanation
Indices: 23394279--23394315 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
23394269 TGATGGAGTT
23394279 CAAATTAAGAAATTACTA
1 CAAATTAAGAAATTACTA
23394297 CAAATTAAGAAATTACTA
1 CAAATTAAGAAATTACTA
23394315 C
1 C
23394316 TTGTTAACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.27
Consensus pattern (18 bp):
CAAATTAAGAAATTACTA
Found at i:23413542 original size:40 final size:40
Alignment explanation
Indices: 23413423--23413542 Score: 123
Period size: 40 Copynumber: 3.0 Consensus size: 40
23413413 GCATTTGGAT
* * *
23413423 AAAAAAGACCGCTATAGATCGAGCATTAGTGACGCTTTTTG
1 AAAAACGA-CGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* * * * * *
23413464 AAAAACGTCACTATAGATCGAGAATCAACTGCGCTTTTTG
1 AAAAACGACGCTATAGATCGAGCATTAGCGGCGCTTTTTG
* * *
23413504 AAAAGCGACGCTATAGATCTAGCATTAGCGGCGTTTTTT
1 AAAAACGACGCTATAGATCGAGCATTAGCGGCGCTTTTT
23413543 AAGGTCGACC
Statistics
Matches: 61, Mismatches: 18, Indels: 1
0.76 0.22 0.01
Matches are distributed among these distances:
40 55 0.90
41 6 0.10
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (40 bp):
AAAAACGACGCTATAGATCGAGCATTAGCGGCGCTTTTTG
Found at i:23414628 original size:116 final size:116
Alignment explanation
Indices: 23414422--23414638 Score: 249
Period size: 116 Copynumber: 1.9 Consensus size: 116
23414412 CGATGTTTTT
* * * *
23414422 ATCATAAACGACGTCGTTCTATTGGATTTCTTAGTGGCGTTTTTGGTGAAACGCCACAATATGCC
1 ATCATAAACGACATCGTTCTATTGGATTTCTTAGTGGCATTTTTGGTAAAACGCCACAATAGGCC
*
23414487 AAGCTTTAGCGGCGCCAGTGAAAAAACGCCGCAAAAAAAATATTATGTTTA
66 AAGCTTTAGCGGCGCCAGTGAAAAAACACCGCAAAAAAAATATTATGTTTA
* * * * * * *
23414538 ATCA-AAACGACATCGTTTTATTTGATTTTTTTAGTGGCATTTTTGTTAAAATGCCGCAATAGGT
1 ATCATAAACGACATCGTTCTATTGGA-TTTCTTAGTGGCATTTTTGGTAAAACGCCACAATAGGC
** * * *
23414602 CTTGCTTTAGCGGCTCTAGGTG-AAAAACACCGTAAAA
65 CAAGCTTTAGCGGCGCCA-GTGAAAAAACACCGCAAAA
23414639 TGTTATTTGT
Statistics
Matches: 82, Mismatches: 17, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
115 18 0.22
116 61 0.74
117 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.32
Consensus pattern (116 bp):
ATCATAAACGACATCGTTCTATTGGATTTCTTAGTGGCATTTTTGGTAAAACGCCACAATAGGCC
AAGCTTTAGCGGCGCCAGTGAAAAAACACCGCAAAAAAAATATTATGTTTA
Found at i:23414961 original size:41 final size:41
Alignment explanation
Indices: 23414916--23414996 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
23414906 GTAGCCCAAC
23414916 CTTTTTTCCTCTGCTTTTTTT-CCCAACCTTTTCTCTTTACT
1 CTTTTTTCC-CTGCTTTTTTTCCCCAACCTTTTCTCTTTACT
23414957 CTTTTTTCCCTGCTTTTTTTCCCCAACCTTTTCTCTTTAC
1 CTTTTTTCCCTGCTTTTTTTCCCCAACCTTTTCTCTTTAC
23414997 GGGTCTTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 11 0.28
41 28 0.72
ACGTcount: A:0.07, C:0.33, G:0.02, T:0.57
Consensus pattern (41 bp):
CTTTTTTCCCTGCTTTTTTTCCCCAACCTTTTCTCTTTACT
Found at i:23415709 original size:10 final size:10
Alignment explanation
Indices: 23415694--23415718 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
23415684 TATATATAAT
23415694 TTCATGGTTG
1 TTCATGGTTG
23415704 TTCATGGTTG
1 TTCATGGTTG
23415714 TTCAT
1 TTCAT
23415719 CTTTAGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.52
Consensus pattern (10 bp):
TTCATGGTTG
Found at i:23417827 original size:43 final size:43
Alignment explanation
Indices: 23417673--23417987 Score: 352
Period size: 43 Copynumber: 7.4 Consensus size: 43
23417663 AATATTTTTT
* * *
23417673 TAAAGGTCAAGTTCTTTAGCGGCGTTTGT-GAGAAAAGTACCGT
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGA-AAAAGTACCGC
* * * * ** *
23417716 TAAAGGTC-TGCTCTATAGTGGTGTTTGTAGCAAAAGCGCCAC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
*
23417758 TAAAGGTC-TGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
* * * *
23417800 TAAAGGTCATGTTCTTTAGCAGCGTTTGTAG-CAAAG-CCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
* *
23417841 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
* * * * *
23417884 TAAAAGTCATTTTCTATAGCGACGTTTGTAAAAAAAGAACCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
** * *
23417927 TAAAGGTCATGTTCTATAATGGCGTTTGTAAAAAAAGTGCCGC
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
23417970 TAAAGGTCATGTTCTATA
1 TAAAGGTCATGTTCTATA
23417988 ACGACATTTT
Statistics
Matches: 226, Mismatches: 42, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
41 32 0.14
42 72 0.32
43 122 0.54
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTAGAAAAAGTACCGC
Found at i:23417836 original size:84 final size:83
Alignment explanation
Indices: 23417673--23417987 Score: 366
Period size: 84 Copynumber: 3.7 Consensus size: 83
23417663 AATATTTTTT
* * * * *
23417673 TAAAGGTCAAGTTCTTTAGCGGCGTTTGT-GAGAAAAGTACCGTTAAAGGTC-TGCTCTATAGTG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGA-AAAAGTACCGCTAAAGGTCATGTTCTATAG-C
* *
23417736 GTGTTTGTAGCAAAAGCGCCAC
64 GCGTTTGTAGC-AAAGC-CCGC
*
23417758 TAAAGGTC-TGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGCTAAAGGTCATGTTCTTTAGCAG
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGCTAAAGGTCATGTTCTATAGC-G
23417822 CGTTTGTAGCAAAGCCCGC
65 CGTTTGTAGCAAAGCCCGC
* * *
23417841 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAAGTCATTTTCTATAGCGA
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGCTAAAGGTCATGTTCTATAGCG-
** *
23417906 CGTTTGTAAAAAAAGAACCGC
65 CGTTTGT-AGCAAAG-CCCGC
** ** *
23417927 TAAAGGTCATGTTCTATAATGGCGTTTGTAAAAAAAGTGCCGCTAAAGGTCATGTTCTATA
1 TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGCTAAAGGTCATGTTCTATA
23417988 ACGACATTTT
Statistics
Matches: 202, Mismatches: 21, Indels: 13
0.86 0.09 0.06
Matches are distributed among these distances:
83 12 0.06
84 98 0.49
85 33 0.16
86 59 0.29
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (83 bp):
TAAAGGTCATGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGCTAAAGGTCATGTTCTATAGCGC
GTTTGTAGCAAAGCCCGC
Found at i:23417899 original size:127 final size:128
Alignment explanation
Indices: 23417673--23417987 Score: 384
Period size: 127 Copynumber: 2.5 Consensus size: 128
23417663 AATATTTTTT
* * * * *
23417673 TAAAGGTCAAGTTCTTTAGCGGCGTTTGTGAGAAAAGTACCGTTAAAGGTC-TGCTCTATAGTGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAAGAAAAGTACCGCTAAAGGTCATGTTCTATAGCGG
* * * * ** *
23417737 TGTTTGTAGCAAAAGCGCCACTAAAGGTCTGTTCTATAGCGGCGTTTGTGGAAAAAGTACCGC
66 CGTTTGTAGAAAAAGCGCCACTAAAAGTCTGTTCTATAGCGACGTTTGTAAAAAAAGAACCGC
* * *
23417800 TAAAGGTCATGTTCTTTAGCAGCGTTTGT-AGCAAAG-CCCGCTAAAGGTCATGTTCTATAGCGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAAGAAAAGTACCGCTAAAGGTCATGTTCTATAGCGG
* * * *
23417863 CGTTTGTGGAAAAAGTGCCGCTAAAAGTCATTTTCTATAGCGACGTTTGTAAAAAAAGAACCGC
66 CGTTTGTAGAAAAAGCGCCACTAAAAGTC-TGTTCTATAGCGACGTTTGTAAAAAAAGAACCGC
* ** * *
23417927 TAAAGGTCATGTTCTATAATGGCGTTTGTAAAAAAAGTGCCGCTAAAGGTCATGTTCTATA
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAAGAAAAGTACCGCTAAAGGTCATGTTCTATA
23417988 ACGACATTTT
Statistics
Matches: 159, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
125 11 0.07
126 40 0.25
127 81 0.51
128 5 0.03
129 22 0.14
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (128 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTGTAAGAAAAGTACCGCTAAAGGTCATGTTCTATAGCGG
CGTTTGTAGAAAAAGCGCCACTAAAAGTCTGTTCTATAGCGACGTTTGTAAAAAAAGAACCGC
Done.