Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 72 of 279
Found at i:23806829 original size:76 final size:77
Alignment explanation
Indices: 23806702--23806862 Score: 306
Period size: 76 Copynumber: 2.1 Consensus size: 77
23806692 TTTATAGATT
23806702 TTTTGGTTCTCCAGCTATCGGACTCGGGATCTTGACGTCGAAGTCGCCCACACTATCAAAGGCTC
1 TTTTGGTTCTCCAGCTATCGGACTCGGGATCTTGACGTCGAAGTCGCCCACACTATCAAAGGCTC
23806767 TTTTGGGTACTA
66 TTTTGGGTACTA
*
23806779 -TTTGGTTCTCCAGCTATCGGACTCGGGATCTTGACGTTGAAGTCGCCCACACTATCAAAGGCTC
1 TTTTGGTTCTCCAGCTATCGGACTCGGGATCTTGACGTCGAAGTCGCCCACACTATCAAAGGCTC
23806843 TTTTGGGTACTA
66 TTTTGGGTACTA
23806855 TTTTGGTT
1 TTTTGGTT
23806863 GAATTTTGAT
Statistics
Matches: 82, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
76 75 0.91
77 7 0.09
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.34
Consensus pattern (77 bp):
TTTTGGTTCTCCAGCTATCGGACTCGGGATCTTGACGTCGAAGTCGCCCACACTATCAAAGGCTC
TTTTGGGTACTA
Found at i:23815679 original size:40 final size:39
Alignment explanation
Indices: 23815489--23815672 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
23815479 TGAATGATGT
* * * *
23815489 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
** *
23815529 CCGAACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* *
23815569 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTGCTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23815607 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
23815648 CCGGGCTATGTTCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
23815673 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23815694 original size:79 final size:79
Alignment explanation
Indices: 23815541--23815695 Score: 206
Period size: 79 Copynumber: 2.0 Consensus size: 79
23815531 GAACTAAGAT
* ** *
23815541 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTGCTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTAGCTAA
23815606 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
23815620 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTTCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTAGCT
*
23815684 ATATCC-GGTTAA
64 AAATCCGGGTTAA
23815696 ATTTCGAAGG
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 2 0.03
79 39 0.59
80 25 0.38
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTAGCTAA
ATCCGGGTTAAGTC
Found at i:23819426 original size:70 final size:70
Alignment explanation
Indices: 23819308--23819454 Score: 285
Period size: 70 Copynumber: 2.1 Consensus size: 70
23819298 ATTTTTACCC
23819308 CATGTTTAACGCATTTAATGGATGATTTCCCATTAGAATTGGTGAATTCGATGATCCTAATGCTT
1 CATG-TTAACGCATTTAATGGATGATTTCCCATTAGAATTGGTGAATTCGATGATCCTAATGCTT
23819373 TAATTT
65 TAATTT
23819379 CATGTTAACGCATTTAATGGATGATTTCCCATTAGAATTGGTGAATTCGATGATCCTAATGCTTT
1 CATGTTAACGCATTTAATGGATGATTTCCCATTAGAATTGGTGAATTCGATGATCCTAATGCTTT
23819444 AATTT
66 AATTT
23819449 CATGTT
1 CATGTT
23819455 TTATACTTAA
Statistics
Matches: 76, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 72 0.95
71 4 0.05
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (70 bp):
CATGTTAACGCATTTAATGGATGATTTCCCATTAGAATTGGTGAATTCGATGATCCTAATGCTTT
AATTT
Found at i:23822717 original size:55 final size:55
Alignment explanation
Indices: 23822610--23822747 Score: 145
Period size: 55 Copynumber: 2.5 Consensus size: 55
23822600 TGGCTGTAGG
* * * *
23822610 CGAAACTGCCAAAA-CAACACGGGCATTAGACACGCCCGTGCCTTGAAACCATGGT
1 CGAAACTG-CAAAATGAACACGGGCATGAGACACGCCCGTGCCCTCAAACCATGGT
* * * * *
23822665 TGAAACTG-AGAATGGAACACGGGCATGAGACACGCCTGTGCCCTCCACCCATGGT
1 CGAAACTGCAAAAT-GAACACGGGCATGAGACACGCCCGTGCCCTCAAACCATGGT
*
23822720 CGACACTGTCAAAATGAACACGGGCATG
1 CGAAACTG-CAAAATGAACACGGGCATG
23822748 GACCTATGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
53 3 0.04
55 47 0.70
56 13 0.19
57 4 0.06
ACGTcount: A:0.31, C:0.29, G:0.25, T:0.15
Consensus pattern (55 bp):
CGAAACTGCAAAATGAACACGGGCATGAGACACGCCCGTGCCCTCAAACCATGGT
Found at i:23824641 original size:22 final size:24
Alignment explanation
Indices: 23824591--23824642 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
23824581 ATGTTGTTCC
23824591 TTTTA-TTTTCATTTAAGACTACT
1 TTTTATTTTTCATTTAAGACTACT
23824614 TTTTATTTTTC-TTTAAG-CTTA-T
1 TTTTATTTTTCATTTAAGAC-TACT
23824636 TTTTATT
1 TTTTATT
23824643 AGGTTTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 9 0.33
23 13 0.48
24 5 0.19
ACGTcount: A:0.21, C:0.10, G:0.04, T:0.65
Consensus pattern (24 bp):
TTTTATTTTTCATTTAAGACTACT
Found at i:23828218 original size:29 final size:29
Alignment explanation
Indices: 23828185--23828279 Score: 122
Period size: 29 Copynumber: 3.3 Consensus size: 29
23828175 AGACCTAACT
*
23828185 ATATTTACATGGCCCATTAGGCCCAAATC
1 ATATTTATATGGCCCATTAGGCCCAAATC
* *
23828214 ATATTTATATGGCCCTTTATGCCCAAATC
1 ATATTTATATGGCCCATTAGGCCCAAATC
* *
23828243 ACATTTATGTGGCCCA-TAGGCCCAAATC
1 ATATTTATATGGCCCATTAGGCCCAAATC
*
23828271 ACA-TTATAT
1 ATATTTATAT
23828280 TCATCCTCAC
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 5 0.09
28 14 0.24
29 39 0.67
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.32
Consensus pattern (29 bp):
ATATTTATATGGCCCATTAGGCCCAAATC
Found at i:23828516 original size:16 final size:16
Alignment explanation
Indices: 23828497--23828533 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
23828487 AAACTTTCAG
23828497 CTTTTCAGCATTTCGA
1 CTTTTCAGCATTTCGA
*
23828513 CTTTTCGGCATTTCGA
1 CTTTTCAGCATTTCGA
23828529 CTTTT
1 CTTTT
23828534 GCCGATCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.14, C:0.24, G:0.14, T:0.49
Consensus pattern (16 bp):
CTTTTCAGCATTTCGA
Found at i:23837542 original size:27 final size:27
Alignment explanation
Indices: 23837493--23837544 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
23837483 AGTACCCCTA
* ***
23837493 ATTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAAAATTACCGAAATACCCTCG
23837520 ATTTACAAAATTACCGAAATACCCT
1 ATTTACAAAATTACCGAAATACCCT
23837545 TGTAGGGTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.33
Consensus pattern (27 bp):
ATTTACAAAATTACCGAAATACCCTCG
Found at i:23837561 original size:27 final size:27
Alignment explanation
Indices: 23837531--23837608 Score: 147
Period size: 27 Copynumber: 2.9 Consensus size: 27
23837521 TTTACAAAAT
23837531 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
23837558 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
23837585 TACCGAAATACCCCTGTAGGGTAG
1 TACCGAAATACCCTTGTAGGGTAG
23837609 GACTACTTAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.22
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:23837624 original size:54 final size:53
Alignment explanation
Indices: 23837526--23837638 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 53
23837516 CTCGATTTAC
* * *
23837526 AAAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGT
1 AAAA-TACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGGAGGGT
* * ** **
23837580 AGAAATACCGAAATACCCCTGTAGGGTAGGACTACTTATTTACCCCTGGAGGGT
1 A-AAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGGAGGGT
23837634 AAAAT
1 AAAAT
23837639 GACTATTTTA
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
53 4 0.08
54 42 0.86
55 3 0.06
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (53 bp):
AAAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGGAGGGT
Found at i:23838310 original size:27 final size:26
Alignment explanation
Indices: 23838266--23838317 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
23838256 TTTGCTGCAA
*
23838266 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
23838293 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
23838318 GCAACCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:23845322 original size:26 final size:27
Alignment explanation
Indices: 23845242--23845324 Score: 123
Period size: 27 Copynumber: 3.1 Consensus size: 27
23845232 ACAAAATTAT
23845242 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
*
23845269 CAAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
* * *
23845296 CGAAATGCCC-TGTAGGGTAGGACTAC
1 CGAAATACCCTTGTAGGGTAGAAATAC
23845322 CGA
1 CGA
23845325 TTTACCCCTA
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 17 0.33
27 34 0.67
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.20
Consensus pattern (27 bp):
CGAAATACCCTTGTAGGGTAGAAATAC
Found at i:23846096 original size:100 final size:100
Alignment explanation
Indices: 23845955--23846174 Score: 413
Period size: 100 Copynumber: 2.2 Consensus size: 100
23845945 GAGGAAGCGT
23845955 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCATATATATATATATCTATTCTGGTGGCCTAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCATATATATATATATCTATTCTGGTGGCCTAA
23846020 CCACAATATCTGTATCTGGTGACTTCGTCACAATA
66 CCACAATATCTGTATCTGGTGACTTCGTCACAATA
*
23846055 TTTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCATATATATATATATCTATTCTGGTGGCCTAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCATATATATATATATCTATTCTGGTGGCCTAA
23846120 CCACAATATCTGTATCTGGTGACTTCGTCACAATA
66 CCACAATATCTGTATCTGGTGACTTCGTCACAATA
* *
23846155 TCTGGCAGCGTCGTTGCAAT
1 TCTGGCAGCCTCGCTGCAAT
23846175 TTTTGTGGTG
Statistics
Matches: 116, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 116 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (100 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCTTCGCCATATATATATATATCTATTCTGGTGGCCTAA
CCACAATATCTGTATCTGGTGACTTCGTCACAATA
Found at i:23853888 original size:13 final size:13
Alignment explanation
Indices: 23853870--23853895 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23853860 AAGTAATCGT
23853870 ACACGGGCGTGTC
1 ACACGGGCGTGTC
23853883 ACACGGGCGTGTC
1 ACACGGGCGTGTC
23853896 CTTGCCAACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:23861792 original size:21 final size:21
Alignment explanation
Indices: 23861749--23861794 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
23861739 CTTTCAAAAG
* * * *
23861749 AAAATAATAAAATTGAAATTA
1 AAAAAAATAAAAATAAAAATA
23861770 AAAAAAATAAAAATAAAAATA
1 AAAAAAATAAAAATAAAAATA
23861791 AAAA
1 AAAA
23861795 GATAAGAGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (21 bp):
AAAAAAATAAAAATAAAAATA
Found at i:23865447 original size:16 final size:17
Alignment explanation
Indices: 23865426--23865464 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
23865416 GATGTAATGC
23865426 CCCAAAAATCCCGAAA-
1 CCCAAAAATCCCGAAAG
*
23865442 CCCAAAAATCCTGAAAG
1 CCCAAAAATCCCGAAAG
23865459 CCCAAA
1 CCCAAA
23865465 CTTTCTTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.49, C:0.36, G:0.08, T:0.08
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAG
Found at i:23871678 original size:27 final size:27
Alignment explanation
Indices: 23871645--23871816 Score: 227
Period size: 27 Copynumber: 6.4 Consensus size: 27
23871635 TGATAAGTTA
* *
23871645 TAGAATTACCGAAATACCCTTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAGGG
23871672 TAGAATTACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
**
23871699 TAGAATTACCGAAATACCCCTGTAGAA
1 TAGAATTACCGAAATACCCCTGTAGGG
*
23871726 TAGAATTACCGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* * *
23871753 TAGAAATACTGAAACACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* ** *
23871780 TAGAATTACCGAGATACCTTTGTGGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
23871807 TAAAATTACC
1 TAGAATTACC
23871817 ATTTTGCCCC
Statistics
Matches: 126, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAGGG
Found at i:23871779 original size:81 final size:81
Alignment explanation
Indices: 23871644--23871797 Score: 263
Period size: 81 Copynumber: 1.9 Consensus size: 81
23871634 TTGATAAGTT
* *
23871644 ATAGAATTACCGAAATACCCTTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACC
1 ATAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAACACCCCTGTAGGGTAGAATTACC
23871709 GAAATACCCCTGTAGA
66 GAAATACCCCTGTAGA
* *
23871725 ATAGAATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAACACCCCTGTAGGGTAGAATTACC
1 ATAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAACACCCCTGTAGGGTAGAATTACC
*
23871790 GAGATACC
66 GAAATACC
23871798 TTTGTGGGGT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.23
Consensus pattern (81 bp):
ATAGAATTACCGAAATACCCTTGTAAGGTAGAAATACCGAAACACCCCTGTAGGGTAGAATTACC
GAAATACCCCTGTAGA
Found at i:23871861 original size:27 final size:26
Alignment explanation
Indices: 23871817--23871870 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
23871807 TAAAATTACC
23871817 ATTTTGCCCCTAGGGTGTTAAATGACT
1 ATTTTGCCCCTAGGGTG-TAAATGACT
* *
23871844 ATTTTGCCCCTTGTGTGTAAATGACT
1 ATTTTGCCCCTAGGGTGTAAATGACT
23871870 A
1 A
23871871 AATTGTGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (26 bp):
ATTTTGCCCCTAGGGTGTAAATGACT
Found at i:23872565 original size:71 final size:71
Alignment explanation
Indices: 23872449--23872594 Score: 220
Period size: 71 Copynumber: 2.1 Consensus size: 71
23872439 GAGGAAGCAT
* * * *
23872449 TCTGGTAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATATATCTGTTCTGGTGACTTCGTC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATATATCTGTTCTGGTGACCTAGCC
23872514 ACAATA
66 ACAATA
* * * *
23872520 TCTGGCAGCCTCGCTGCAATCTGGTGGCTTTGCCACATATATATATCTGTTTTGGTGTCCTAGCC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATATATCTGTTCTGGTGACCTAGCC
23872585 ACAATA
66 ACAATA
23872591 TCTG
1 TCTG
23872595 TATCTGGTGA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (71 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATATATCTGTTCTGGTGACCTAGCC
ACAATA
Found at i:23873041 original size:20 final size:21
Alignment explanation
Indices: 23873016--23873054 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23873006 TCGTAACTAA
23873016 AAGGTTT-TTTTAATTTAATT
1 AAGGTTTCTTTTAATTTAATT
*
23873036 AAGGTTTCTTTTATTTTAA
1 AAGGTTTCTTTTAATTTAA
23873055 GAAGGGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (21 bp):
AAGGTTTCTTTTAATTTAATT
Found at i:23873059 original size:20 final size:20
Alignment explanation
Indices: 23873016--23873064 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
23873006 TCGTAACTAA
*
23873016 AAGGTTTTTTTAATTTAATT
1 AAGGTTTTTTTAATTTAATG
*
23873036 AAGGTTTCTTTTATTTTAA-G
1 AAGGTTT-TTTTAATTTAATG
23873056 AAGGGTTTT
1 AA-GGTTTT
23873065 CAATGAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.27, C:0.02, G:0.16, T:0.55
Consensus pattern (20 bp):
AAGGTTTTTTTAATTTAATG
Found at i:23876706 original size:44 final size:43
Alignment explanation
Indices: 23876558--23876724 Score: 153
Period size: 43 Copynumber: 3.9 Consensus size: 43
23876548 TGGAAATCTC
* * * * * *
23876558 ATACAATGCCAACGTCCTAGACATGGTTTTACA-AGTAATGAA
1 ATACAATGCCAATGTCCCAGATATGGTCTTACACAGAAATCAA
* * *
23876600 ATATCGATGCCACTGTCCCAGATAGGGTCTTACA-AGAAATCAA
1 ATA-CAATGCCAATGTCCCAGATATGGTCTTACACAGAAATCAA
* * * *
23876643 ATACAATGTCGATGTCCCAGACATGGTCTTACACATAAATCATA
1 ATACAATGCCAATGTCCCAGATATGGTCTTACACAGAAATCA-A
*
23876687 AGTA-AATGCCAATGTCCCAGATGTGGTCTTACAC-GAAA
1 A-TACAATGCCAATGTCCCAGATATGGTCTTACACAGAAA
23876725 ACACATATCG
Statistics
Matches: 100, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
42 27 0.27
43 43 0.43
44 28 0.28
45 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGATATGGTCTTACACAGAAATCAA
Found at i:23881558 original size:10 final size:12
Alignment explanation
Indices: 23881538--23881571 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
23881528 TTGGTTGTAA
23881538 GCTTATATATAT
1 GCTTATATATAT
23881550 GCTTATATATAT
1 GCTTATATATAT
*
23881562 ACTTATATAT
1 GCTTATATAT
23881572 GCATGCATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (12 bp):
GCTTATATATAT
Found at i:23888252 original size:39 final size:39
Alignment explanation
Indices: 23888137--23888321 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
23888127 GCTACTCGTT
* *
23888137 CAAATGCCTTCGGAACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATT-TAGTAACTCGCA
* *
23888177 CAAATGCCTTCGGGACTTAACCCGGATTTAGCAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATTTAGTAACTCGCA
* *
23888217 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
* ** * * * *
23888256 CAAATGCCTTCGGATCTTAGTTCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGATTTAGTAAC-TCGCA
23888297 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
23888322 CATCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 34 0.28
40 76 0.63
41 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
Found at i:23888282 original size:79 final size:80
Alignment explanation
Indices: 23888139--23888321 Score: 196
Period size: 79 Copynumber: 2.3 Consensus size: 80
23888129 TACTCGTTCA
* * *
23888139 AATGCCTTCGGAACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGG-GCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
23888203 TTTAG-CAAC-TCGCACC
65 TATAGTC-ACTTAGCA-C
***
23888219 AATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTTCGGA
1 AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
*
23888282 TATGGTCACTTAGCAC
65 TATAGTCACTTAGCAC
*
23888298 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGA
23888322 CATCATTCAA
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
78 3 0.03
79 57 0.65
80 28 0.32
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTCACTTAGCAC
Found at i:23904056 original size:40 final size:40
Alignment explanation
Indices: 23903874--23904096 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
23903864 TCCTCGTTCA
* * * * *
23903874 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
23903913 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
23903953 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
23903993 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
23904033 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
23904073 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
23904097 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:23904105 original size:41 final size:41
Alignment explanation
Indices: 23904028--23904105 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
23904018 TTAGTATCTC
* * *
23904028 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
23904069 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
23904106 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:23905693 original size:46 final size:46
Alignment explanation
Indices: 23905622--23905908 Score: 384
Period size: 46 Copynumber: 6.3 Consensus size: 46
23905612 CCGAAAATCT
*
23905622 CTGGCTCTCATAATGTGGCCAATGCATGTCCCAGACATGTCTTACA
1 CTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACA
* * * ** *
23905668 CTGGCTTTCATAATGTGGTCGATGCATATCTTAGACATAT-TTACA
1 CTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACA
* *
23905713 CTAGCTCTCGTCTCAA--T-GCCGATGCATGTCCCAGACATGTCTTACA
1 CTGGCTCTC--AT-AATGTGGCCGATGCATGTCCCAGACATGTCTTACA
* *
23905759 CTGGCTCTCATAATGTGGCCAATGCATGTCCCAGACATGTCATACA
1 CTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACA
*
23905805 CTGGCTTTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACA
1 CTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACA
* *
23905851 CTGGCTCTCATAATGTGGTCGATGCTTGTCCCAGACATGTCTTACA
1 CTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACA
*
23905897 CTGGCTCACATA
1 CTGGCTCTCATA
23905909 CCACTTAATG
Statistics
Matches: 208, Mismatches: 26, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
43 2 0.01
44 1 0.00
45 31 0.15
46 171 0.82
47 1 0.00
48 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
CTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCTTACA
Found at i:23906987 original size:21 final size:21
Alignment explanation
Indices: 23906949--23906988 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
23906939 AGTCCTTTTT
*
23906949 TAAAATTAAGCTCACAAATGC
1 TAAAATTAACCTCACAAATGC
23906970 TAAAATT-ACCTCACCAAAT
1 TAAAATTAACCTCA-CAAAT
23906989 TTTTCATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.47, C:0.23, G:0.05, T:0.25
Consensus pattern (21 bp):
TAAAATTAACCTCACAAATGC
Found at i:23914154 original size:85 final size:87
Alignment explanation
Indices: 23914010--23914201 Score: 202
Period size: 85 Copynumber: 2.2 Consensus size: 87
23914000 TAGACCACGC
* * *
23914010 CTGGGACATTGGCATCG-ATTTGAGATTTACGTGAAAGACCATGTCTGGGACATTGGCATC-G-A
1 CTGGGACATTGGCATCGTATAT-AGATTTACGTGAAAGACCATGTCTAGGACAGTGGCATCGGTA
*
23914072 TTTGAGATTTACGTGTAAGACC-ATGT
65 TTT--GA-TTACATGTAAGACCTA-GT
* *
23914098 TTGGGAC-TTGGCATCGTATAT-GATTT-CGTGTAAA-ACCCTGTCTAGGACAGTGGCATCGGTA
1 CTGGGACATTGGCATCGTATATAGATTTACGTG-AAAGACCATGTCTAGGACAGTGGCATCGGTA
23914159 TTTGATTACATGTAAGACCTAGT
65 TTTGATTACATGTAAGACCTAGT
* *
23914182 CTGGGACGTTGGCATTGTAT
1 CTGGGACATTGGCATCGTAT
23914202 GAGTTTACGA
Statistics
Matches: 90, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
84 21 0.23
85 38 0.42
86 9 0.10
87 13 0.14
88 9 0.10
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.32
Consensus pattern (87 bp):
CTGGGACATTGGCATCGTATATAGATTTACGTGAAAGACCATGTCTAGGACAGTGGCATCGGTAT
TTGATTACATGTAAGACCTAGT
Found at i:23914195 original size:43 final size:43
Alignment explanation
Indices: 23913990--23914196 Score: 203
Period size: 44 Copynumber: 4.8 Consensus size: 43
23913980 TCCGATATGT
* * *
23913990 GATTT-CGTGTTAGACCACGCCTGGGACATTGGCATCGATTTGA
1 GATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGATTT-A
*
23914033 GATTTACGTGAAAGACCATGTCTGGGACATTGGCATCGATTTGA
1 GATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGATTT-A
* *
23914077 GATTTACGTGTAAGACCATGTTTGGGAC-TTGGCATCG-TATA
1 GATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGATTTA
* * * *
23914118 TGATTT-CGTGTAAAACCCTGTCTAGGACAGTGGCATCGGTATTT-
1 -GATTTACGTGTAAGACCATGTCTGGGACATTGGCATC-G-ATTTA
* *
23914162 GA-TTACATGTAAGACC-TAGTCTGGGACGTTGGCAT
1 GATTTACGTGTAAGACCAT-GTCTGGGACATTGGCAT
23914197 TGTATGAGTT
Statistics
Matches: 138, Mismatches: 18, Indels: 16
0.80 0.10 0.09
Matches are distributed among these distances:
41 19 0.14
42 17 0.12
43 40 0.29
44 60 0.43
45 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
GATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGATTTA
Found at i:23920087 original size:27 final size:27
Alignment explanation
Indices: 23920057--23920120 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
23920047 GTCCAAGATT
*
23920057 TATTGGGCCGTATGAGATTATTGAGCG
1 TATTGGGCCGTATGAGATTATTGAGCA
* *
23920084 TATTGGGTCGTGTGAGATTATTGAGCA
1 TATTGGGCCGTATGAGATTATTGAGCA
23920111 TATTGGGCCG
1 TATTGGGCCG
23920121 GTTGCTTACA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.20, C:0.11, G:0.34, T:0.34
Consensus pattern (27 bp):
TATTGGGCCGTATGAGATTATTGAGCA
Found at i:23923240 original size:22 final size:22
Alignment explanation
Indices: 23923178--23923245 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
23923168 TAAGGGACAT
23923178 TGTGA-ATGTTT-TGAATATG-A
1 TGTGATATGTTTAT-AATATGTA
* *
23923198 TTTGATAATGTGTTAT-CTATGTA
1 TGTGAT-ATGT-TTATAATATGTA
23923221 TGTGATATGTTTATAATATGCTA
1 TGTGATATGTTTATAATATG-TA
23923244 TG
1 TG
23923246 AATAGTTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
20 4 0.11
21 4 0.11
22 16 0.43
23 12 0.32
24 1 0.03
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.49
Consensus pattern (22 bp):
TGTGATATGTTTATAATATGTA
Found at i:23926366 original size:20 final size:19
Alignment explanation
Indices: 23926330--23926380 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
23926320 AAGGGCTATT
*
23926330 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
23926349 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
23926369 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
23926381 GTTTCTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:23931640 original size:47 final size:47
Alignment explanation
Indices: 23931583--23931745 Score: 175
Period size: 47 Copynumber: 3.4 Consensus size: 47
23931573 ATTGATGTAC
* *
23931583 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
23931630 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATAAAGGTGA
1 AAGTATATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * * * * *
23931679 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGACGGATATGG
1 A-AGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
23931726 AAGTGTATAAATGTGATAAG
1 AAGTATATATATGTGATAAG
23931746 TCCCGAAGGG
Statistics
Matches: 96, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
46 1 0.01
47 56 0.58
49 38 0.40
50 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (47 bp):
AAGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:23931672 original size:22 final size:22
Alignment explanation
Indices: 23931644--23931716 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
23931634 ATATATATGC
23931644 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
* * *
23931666 GTGATAAAGG-TGAACATGTG-TATGT
1 GTGAT-AAGGCCG-A-ATG-GCCA-AT
23931691 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
23931713 GTGA
1 GTGA
23931717 CGGATATGGA
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 12 0.32
23 9 0.24
24 9 0.24
25 8 0.21
ACGTcount: A:0.32, C:0.12, G:0.33, T:0.23
Consensus pattern (22 bp):
GTGATAAGGCCGAATGGCCAAT
Found at i:23931969 original size:47 final size:47
Alignment explanation
Indices: 23931901--23932008 Score: 162
Period size: 47 Copynumber: 2.3 Consensus size: 47
23931891 AAGTAAGACC
* * *
23931901 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGACGAATATGAAAGTGT
* *
23931948 ATATATGTGATAAGGCCGAATGGCCAATGTGACGGATATGGAAGTGT
1 ATATATGTGATAAGGCCGAATGGCCAATGTGACGAATATGAAAGTGT
*
23931995 ATAAATGTGATAAG
1 ATATATGTGATAAG
23932009 TCCCGAAGGG
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.36, C:0.08, G:0.30, T:0.26
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGACGAATATGAAAGTGT
Found at i:23932113 original size:263 final size:263
Alignment explanation
Indices: 23931646--23932162 Score: 982
Period size: 263 Copynumber: 2.0 Consensus size: 263
23931636 ATATATGCGT
* *
23931646 GATAAGGCCGAATGGCCAATGTGATAAAGGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 GATAAGGCCGAATGGCCAATGTGATAAAGGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
23931711 ATGTGACGGATATGGAAGTGTATAAATGTGATAAGTCCCGAAGGGCAATTGTGTCAGTACTATAT
66 ATGTGACGGATATGGAAGTGTATAAATGTGATAAGTCCCGAAGGGCAATTGTGTCAGTACTATAT
23931776 CCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTG
131 CCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTG
23931841 CTCATACTATATCCGAGCTTTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACCATATA
196 CTCATACTATATCCGAGCTTTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACCATATA
23931906 TGA
261 TGA
* *
23931909 GATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCC
1 GATAAGGCCGAATGGCCAATGTGATAAAGGTGAACA-TGTATATATGTGATAAGGCCGAATGGCC
23931973 AATGTGACGGATATGGAAGTGTATAAATGTGATAAGTCCCGAAGGGCAATTGTGTCAGTACTATA
65 AATGTGACGGATATGGAAGTGTATAAATGTGATAAGTCCCGAAGGGCAATTGTGTCAGTACTATA
23932038 TCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGT
130 TCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGT
23932103 GCTCATACTATATCCGAGCTTTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGAC
195 GCTCATACTATATCCGAGCTTTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGAC
23932163 TTTGATATTG
Statistics
Matches: 249, Mismatches: 4, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
262 1 0.00
263 248 1.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (263 bp):
GATAAGGCCGAATGGCCAATGTGATAAAGGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
ATGTGACGGATATGGAAGTGTATAAATGTGATAAGTCCCGAAGGGCAATTGTGTCAGTACTATAT
CCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTATCCTGATTAATGTCCGTAGGCTTCGTG
CTCATACTATATCCGAGCTTTAAAGACCCGACGGCTAAATGCTAGGATTCAAGTAAGACCATATA
TGA
Found at i:23934503 original size:38 final size:38
Alignment explanation
Indices: 23934439--23934513 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
23934429 AATCCGAGTT
*
23934439 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
23934477 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
23934514 ATTAAAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:23938233 original size:30 final size:31
Alignment explanation
Indices: 23938196--23938271 Score: 93
Period size: 30 Copynumber: 2.5 Consensus size: 31
23938186 TTTAAAATGC
* *
23938196 AACAAGTACTTTGTACC-GATGTTTA-ATTGT
1 AACAAGTACTATGTACCAG-TGTTTATATTAT
* *
23938226 ATCAAGTACTATGTATCAGTGTTTATATTAT
1 AACAAGTACTATGTACCAGTGTTTATATTAT
23938257 AACAAGTACTATGTA
1 AACAAGTACTATGTA
23938272 TTGGTGTTCG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
30 20 0.51
31 19 0.49
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.39
Consensus pattern (31 bp):
AACAAGTACTATGTACCAGTGTTTATATTAT
Found at i:23938279 original size:31 final size:30
Alignment explanation
Indices: 23938196--23938279 Score: 96
Period size: 31 Copynumber: 2.8 Consensus size: 30
23938186 TTTAAAATGC
* * * *
23938196 AACAAGTACTTTGTACCGATGTTTAATTGT
1 AACAAGTACTATGTATCGGTGTTTAATTAT
* *
23938226 ATCAAGTACTATGTATCAGTGTTTATATTAT
1 AACAAGTACTATGTATCGGTGTTTA-ATTAT
*
23938257 AACAAGTACTATGTATTGGTGTT
1 AACAAGTACTATGTATCGGTGTT
23938280 CGATATCTTA
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
30 20 0.45
31 24 0.55
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.42
Consensus pattern (30 bp):
AACAAGTACTATGTATCGGTGTTTAATTAT
Found at i:23939821 original size:20 final size:20
Alignment explanation
Indices: 23939783--23939830 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
23939773 TCAATTCTAA
* **
23939783 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
23939803 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
23939823 AAA-ATAAA
1 AAAGATAAA
23939831 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:23939855 original size:27 final size:27
Alignment explanation
Indices: 23939825--23939882 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
23939815 AGATAATTAA
23939825 AATAA-AATCCTAAAATTAAATAATCCT
1 AATAATAATCCTAAAATT-AATAATCCT
* * * *
23939852 AATAATTATCTTAATATTAATTATCCT
1 AATAATAATCCTAAAATTAATAATCCT
23939879 AATA
1 AATA
23939883 TAAGTAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 17 0.65
28 9 0.35
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (27 bp):
AATAATAATCCTAAAATTAATAATCCT
Found at i:23939874 original size:15 final size:15
Alignment explanation
Indices: 23939854--23939883 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23939844 ATAATCCTAA
*
23939854 TAATTATCTTAATAT
1 TAATTATCCTAATAT
23939869 TAATTATCCTAATAT
1 TAATTATCCTAATAT
23939884 AAGTAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:23943247 original size:5 final size:5
Alignment explanation
Indices: 23943233--23943333 Score: 82
Period size: 5 Copynumber: 19.6 Consensus size: 5
23943223 GAATTTTATT
* * * * *
23943233 AATAT AATAA AAT-A ATTAAA AATAA AACAA ATTGA AATAA AATAA AATAAGA
1 AATAA AATAA AATAA AAT-AA AATAA AATAA AATAA AATAA AATAA AAT-A-A
23943285 AATAA AAT-- AATAA AATAA TAATAA AATAA TAATAA AATAGA AATAA
1 AATAA AATAA AATAA AATAA -AATAA AATAA -AATAA AATA-A AATAA
23943331 AAT
1 AAT
23943334 TTAAAATTAA
Statistics
Matches: 78, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
3 3 0.04
4 3 0.04
5 48 0.62
6 20 0.26
7 4 0.05
ACGTcount: A:0.72, C:0.01, G:0.03, T:0.24
Consensus pattern (5 bp):
AATAA
Found at i:23943306 original size:11 final size:11
Alignment explanation
Indices: 23943236--23943333 Score: 80
Period size: 11 Copynumber: 8.9 Consensus size: 11
23943226 TTTTATTAAT
23943236 ATAATAAAATA
1 ATAATAAAATA
*
23943247 ATTA-AAAATA
1 ATAATAAAATA
* * *
23943257 A-AACAAATTG
1 ATAATAAAATA
23943267 A-AATAAAATA
1 ATAATAAAATA
23943277 A-AATAAGAAATAAA
1 ATAAT-A-AAAT--A
23943291 ATAATAAAATA
1 ATAATAAAATA
23943302 ATAATAAAATA
1 ATAATAAAATA
23943313 ATAATAAAATA
1 ATAATAAAATA
23943324 GA-AATAAAAT
1 -ATAATAAAAT
23943334 TTAAAATTAA
Statistics
Matches: 73, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
9 1 0.01
10 22 0.30
11 35 0.48
12 5 0.07
13 4 0.05
14 3 0.04
15 3 0.04
ACGTcount: A:0.72, C:0.01, G:0.03, T:0.23
Consensus pattern (11 bp):
ATAATAAAATA
Found at i:23943319 original size:47 final size:48
Alignment explanation
Indices: 23943238--23943330 Score: 120
Period size: 47 Copynumber: 2.0 Consensus size: 48
23943228 TTATTAATAT
* *
23943238 AATAAAATAATTAAAAATAAAACAAATTGAAATAAAATA-AAATAAGA
1 AATAAAATAATTAAAAATAAAACAAAATAAAATAAAATAGAAATAAGA
*
23943285 AATAAAATAA-T-AAAATAATAATAAAATAATAATAAAATAGAAATAA
1 AATAAAATAATTAAAAATAA-AACAAAATAA-AATAAAATAGAAATAA
23943331 AATTTAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
45 7 0.17
46 8 0.20
47 19 0.47
48 6 0.15
ACGTcount: A:0.73, C:0.01, G:0.03, T:0.23
Consensus pattern (48 bp):
AATAAAATAATTAAAAATAAAACAAAATAAAATAAAATAGAAATAAGA
Found at i:23963503 original size:40 final size:40
Alignment explanation
Indices: 23962140--23963491 Score: 1896
Period size: 40 Copynumber: 33.8 Consensus size: 40
23962130 GAGAATTGAG
* * **
23962140 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
* * ** *
23962180 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
* * * * ** * *
23962220 ACTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
* * * ** * *
23962260 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
* * * ** * *
23962300 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
* * * ** * *
23962340 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
* * * ** * *
23962380 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
* * * ** * *
23962420 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
* * * ** * *
23962460 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
* * * ** * *
23962500 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
* * * ** *
23962540 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
* * ** *
23962580 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
* ****
23962620 AGTGATGTATCCG-GACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTG-CTAAACCCCGAAGAGCATTCGTGCT
23962660 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23962700 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23962740 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23962780 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23962820 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23962860 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23962900 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23962940 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23962980 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23963020 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23963060 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23963100 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23963140 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23963180 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23963220 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23963260 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23963300 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23963340 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23963380 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
23963420 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
* * * ***
23963460 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGTGCTAAACCCCGAAGAGCA
23963492 ATCATGCTGG
Statistics
Matches: 1291, Mismatches: 19, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
39 1 0.00
40 1289 1.00
41 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
Found at i:23971154 original size:39 final size:39
Alignment explanation
Indices: 23971100--23971223 Score: 131
Period size: 39 Copynumber: 3.2 Consensus size: 39
23971090 CAGTGATGTT
* *
23971100 TATCCGGGCTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
* *
23971139 TATCCGGATTTAGGGTCCGCATGCTATGTGCTAGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
* * * * * ** *
23971178 TAACTGAACTTAAGGTCTGCAGGCTACATGCTAGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
*
23971217 TGTCCGG
1 TATCCGG
23971224 GCTAAAGTCC
Statistics
Matches: 67, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
Found at i:23984341 original size:21 final size:21
Alignment explanation
Indices: 23984317--23984358 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
23984307 GTGATTGGTT
23984317 AGGAGCATGTACATAGCTTAA
1 AGGAGCATGTACATAGCTTAA
23984338 AGGAGCATGTACATAGCTTAA
1 AGGAGCATGTACATAGCTTAA
23984359 CTATATTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (21 bp):
AGGAGCATGTACATAGCTTAA
Found at i:23990864 original size:7 final size:7
Alignment explanation
Indices: 23990852--23990877 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
23990842 CCATTCTTAA
23990852 TCATCCC
1 TCATCCC
23990859 TCATCCC
1 TCATCCC
23990866 TCATCCC
1 TCATCCC
23990873 TCATC
1 TCATC
23990878 ATTCTCTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.54, G:0.00, T:0.31
Consensus pattern (7 bp):
TCATCCC
Found at i:23991446 original size:56 final size:56
Alignment explanation
Indices: 23991360--23991591 Score: 455
Period size: 56 Copynumber: 4.1 Consensus size: 56
23991350 ACAAGGGATG
23991360 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
23991416 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
23991472 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
23991528 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
23991584 ATGGGCAA
1 ATGGGCAA
23991592 TAAACTAATA
Statistics
Matches: 175, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 175 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:23993424 original size:40 final size:40
Alignment explanation
Indices: 23993297--23993417 Score: 199
Period size: 40 Copynumber: 3.0 Consensus size: 40
23993287 NNNNNNNNNN
23993297 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
*
23993337 GTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
* *
23993377 GTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTT
1 GTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTT
23993417 G
1 G
23993418 AACGAGTAGC
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 74 0.97
41 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
Found at i:23993435 original size:80 final size:79
Alignment explanation
Indices: 23993297--23993450 Score: 195
Period size: 80 Copynumber: 1.9 Consensus size: 79
23993287 NNNNNNNNNN
* ** *
23993297 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAA
1 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCC-GGTTAA
*
23993362 GTCCCGAAGGCATTT
65 ATCCCGAAGGCATTT
* *
23993377 GTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTA
1 GTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTA-CTAAATCCGGTTA
*
23993440 AATTCCGAAGG
64 AATCCCGAAGG
23993451 TACGTGATTT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
79 16 0.25
80 46 0.72
81 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (79 bp):
GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTTACTAAATCCGGTTAAA
TCCCGAAGGCATTT
Found at i:23995319 original size:40 final size:39
Alignment explanation
Indices: 23995274--23995358 Score: 125
Period size: 39 Copynumber: 2.2 Consensus size: 39
23995264 AAGTGACCAT
* *
23995274 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGACTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
* *
23995314 TTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGACTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
23995353 ATCCGG
1 ATCCGG
23995359 GTTAAGTCCC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 30 0.75
40 10 0.25
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
ATCCGGACTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
Found at i:23995336 original size:39 final size:40
Alignment explanation
Indices: 23995235--23995498 Score: 154
Period size: 40 Copynumber: 6.6 Consensus size: 40
23995225 TCGAATGATG
* * *
23995235 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
23995274 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
23995315 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * ** * * *
23995354 TCCGGGTTAAGTCCCGTAGAGCATTCATGCTAGTGA-T-GT
1 TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
* ** *
23995393 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGGTA-T-A-
1 -TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT--TACTAAT
* * * *
23995434 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-T-GT
1 TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
*
23995473 ATCCGGGCTAAGTTCCGAAGAGCATT
1 -TCCGGGCTAAGTCCCGAAG-GCATT
23995499 CATGCTAGTG
Statistics
Matches: 188, Mismatches: 25, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
38 2 0.01
39 35 0.19
40 127 0.68
41 22 0.12
42 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:23996624 original size:80 final size:80
Alignment explanation
Indices: 23995315--23996616 Score: 2122
Period size: 80 Copynumber: 16.3 Consensus size: 80
23995305 AGTTACTAAT
* * * ** * * * *
23995315 TCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGTAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAAAGCAT
* * *
23995378 TCATGCTAGTGATGTA
65 TCATACTAGTGGTATA
* * * * * *
23995394 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGGTATATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
* * * *
23995459 CGTGCTAGTGATGTA
66 CATACTAGTGGTATA
* *
23995474 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
23995539 CATACTAGTGGTATA
66 CATACTAGTGGTATA
*
23995554 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
* *
23995619 CGTGCTAGTGGTATA
66 CATACTAGTGGTATA
23995634 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
23995699 CATACTAGTGGTATA
66 CATACTAGTGGTATA
23995714 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
23995779 CATACTAGTGGTATA
66 CATACTAGTGGTATA
23995794 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
23995859 CATACTAGTGGTATA
66 CATACTAGTGGTATA
23995874 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
23995939 CATACTAGTGGTATA
66 CATACTAGTGGTATA
23995954 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
23996019 CATACTAGTGGTATA
66 CATACTAGTGGTATA
23996034 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
23996099 CATACTAGTGGTATA
66 CATACTAGTGGTATA
23996114 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
23996179 CATACTAGTGGTATA
66 CATACTAGTGGTATA
23996194 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
23996259 CATACTAGTGGTATA
66 CATACTAGTGGTATA
23996274 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
23996339 CATACTAGTGGTATA
66 CATACTAGTGGTATA
*
23996354 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
* * * *
23996419 CGTGCTAGTGATGTA
66 CATACTAGTGGTATA
* * *
23996434 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
* * *
23996499 CATGCTAGTGATGTA
66 CATACTAGTGGTATA
* * * * *** *
23996514 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
* * * *
23996579 CGTGCTGGTGTTATA
66 CATACTAGTGGTATA
*
23996594 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
23996617 ATCATGCTGG
Statistics
Matches: 1176, Mismatches: 45, Indels: 3
0.96 0.04 0.00
Matches are distributed among these distances:
79 11 0.01
80 1154 0.98
81 11 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAAAGCATT
CATACTAGTGGTATA
Found at i:23996833 original size:25 final size:25
Alignment explanation
Indices: 23996792--23996843 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
23996782 TGTGTAATAA
23996792 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
23996817 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
23996842 TG
1 TG
23996844 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:24004138 original size:40 final size:40
Alignment explanation
Indices: 24004107--24004356 Score: 292
Period size: 40 Copynumber: 6.3 Consensus size: 40
24004097 GGACTAAGAT
* *
24004107 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATATCAAA-TCCGGGTTAAGTC
* *
24004147 CCGAAGGCCTTTGTGCGAGATA-CTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATC-AAATCCGGGTTAAGTC
* *
24004187 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* *
24004227 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* * * *
24004267 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* * * * *
24004307 CCGAAGGCATT-GTGTGAGTTA-CTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATATC-AAATCCGGGTTAAGTC
24004346 CCGAAGGCATT
1 CCGAAGGCATT
24004357 TGAACGAGGA
Statistics
Matches: 194, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
39 33 0.17
40 158 0.81
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
Found at i:24004191 original size:80 final size:79
Alignment explanation
Indices: 24004054--24004356 Score: 342
Period size: 80 Copynumber: 3.8 Consensus size: 79
24004044 TTGAATGCTG
* * * * * **
24004054 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * *
24004117 TTGTGCGAGATACAAA
64 TCGTGCGAGTTATAAA
* *
24004133 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
24004198 CGTGCGAGTTATTAAA
65 CGTGCGAGTTA-TAAA
* * *
24004214 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
24004279 GTGCGAGTTGTTAAA
66 GTGCGAGTT-ATAAA
* * * * * *
24004294 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
24004357 TGAACGAGGA
Statistics
Matches: 192, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
79 36 0.19
80 145 0.76
81 11 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTATAAA
Found at i:24004270 original size:120 final size:119
Alignment explanation
Indices: 24004054--24004356 Score: 358
Period size: 120 Copynumber: 2.5 Consensus size: 119
24004044 TTGAATGCTG
* * * * * *
24004054 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
* * *
24004118 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
64 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* *
24004174 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTC
* * * * **
24004239 GTGCGAGTTATTAAA-TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* * * * *
24004294 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATT
24004357 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
119 35 0.22
120 115 0.73
121 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:24006198 original size:40 final size:40
Alignment explanation
Indices: 24006144--24006337 Score: 327
Period size: 40 Copynumber: 4.9 Consensus size: 40
24006134 GATATAGCTT
*
24006144 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
24006184 CTCGCACAATTGCCTTCGGGACTTAGCCCAGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
24006224 CTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
24006264 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
24006304 CTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
24006338 CAATCCGAAT
Statistics
Matches: 145, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 13 0.09
40 132 0.91
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:24006253 original size:80 final size:80
Alignment explanation
Indices: 24006117--24006337 Score: 331
Period size: 80 Copynumber: 2.8 Consensus size: 80
24006107 AAACCAAGTA
** * *
24006117 CCTTCGGGGTTTAG-CCAGATATAGCT-TCTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCAGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
24006180 GTAACTCGCACAATTG
65 GTAACTCGCACAAATG
* * *
24006196 CCTTCGGGACTTAGCCCAGTTATAGTAACTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
24006261 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
24006276 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
24006338 CAATCCGAAT
Statistics
Matches: 128, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 26 0.20
80 102 0.80
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:24015682 original size:55 final size:55
Alignment explanation
Indices: 24015593--24015704 Score: 197
Period size: 55 Copynumber: 2.0 Consensus size: 55
24015583 TTGTAGGACA
* *
24015593 TCGGAAGAGATCTCAGTAGCTGTCGTCGCAAATCAGGTGTGTGCCGAACACCCTT
1 TCGGAAGAGATCTCAGTAGCAGTCGTCGCAAATCAGGTGTGTACCGAACACCCTT
*
24015648 TCGGAAGAGATCTCAGTAGCAGTCGTCGCGAATCAGGTGTGTACCGAACACCCTT
1 TCGGAAGAGATCTCAGTAGCAGTCGTCGCAAATCAGGTGTGTACCGAACACCCTT
24015703 TC
1 TC
24015705 TGAGTTCAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (55 bp):
TCGGAAGAGATCTCAGTAGCAGTCGTCGCAAATCAGGTGTGTACCGAACACCCTT
Found at i:24020786 original size:20 final size:19
Alignment explanation
Indices: 24020758--24020800 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
24020748 TGGAGTCCTT
* *
24020758 ATGATGTTATTAGACTATTA
1 ATGAAGTTAATAGAC-ATTA
*
24020778 ATGAAGTTAATGGACATTA
1 ATGAAGTTAATAGACATTA
24020797 ATGA
1 ATGA
24020801 CCTTCCATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.37
Consensus pattern (19 bp):
ATGAAGTTAATAGACATTA
Found at i:24021294 original size:42 final size:41
Alignment explanation
Indices: 24021236--24021386 Score: 133
Period size: 42 Copynumber: 3.6 Consensus size: 41
24021226 ATATGATTTA
*
24021236 TGTGTAAGACTATGTCTGGGACATCGACATCATATTTGATT
1 TGTGTAAGACCATGTCTGGGACATCGACATCATATTTGATT
* * * *
24021277 TCGTGTAAGACCCTGTCTGGGATAGT-GGCATCGATATATGATTT
1 T-GTGTAAGACCATGTCTGGGACA-TCGACATC-ATATTTGA-TT
* * * *
24021321 ATGTGTAAGACCATGTCTGGGACATCAACATCGTGTTTCATT
1 -TGTGTAAGACCATGTCTGGGACATCGACATCATATTTGATT
** *
24021363 TGATACAAGACCCTGTCTGGGACA
1 TG-TGTAAGACCATGTCTGGGACA
24021387 ATGGCATCGA
Statistics
Matches: 87, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
41 3 0.03
42 44 0.51
43 13 0.15
44 26 0.30
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (41 bp):
TGTGTAAGACCATGTCTGGGACATCGACATCATATTTGATT
Found at i:24021331 original size:44 final size:43
Alignment explanation
Indices: 24021224--24021352 Score: 163
Period size: 42 Copynumber: 3.0 Consensus size: 43
24021214 ATGGGATCCA
*
24021224 ATATATGATTTATGTGTAAGACTATGTCTGGGACATCGACATC
1 ATATATGATTTATGTGTAAGACCATGTCTGGGACATCGACATC
* * * * *
24021267 ATATTTGATTT-CGTGTAAGACCCTGTCTGGGATAGT-GGCATC
1 ATATATGATTTATGTGTAAGACCATGTCTGGGACA-TCGACATC
*
24021309 GATATATGATTTATGTGTAAGACCATGTCTGGGACATCAACATC
1 -ATATATGATTTATGTGTAAGACCATGTCTGGGACATCGACATC
24021353 GTGTTTCATT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
42 24 0.34
43 22 0.31
44 24 0.34
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (43 bp):
ATATATGATTTATGTGTAAGACCATGTCTGGGACATCGACATC
Found at i:24021353 original size:44 final size:44
Alignment explanation
Indices: 24021224--24021353 Score: 167
Period size: 44 Copynumber: 3.0 Consensus size: 44
24021214 ATGGGATCCA
*
24021224 ATATATGATTTATGTGTAAGACTATGTCTGGGACATCGACATC-
1 ATATATGATTTATGTGTAAGACCATGTCTGGGACATCGACATCG
* * * * *
24021267 ATATTTGATTT-CGTGTAAGACCCTGTCTGGGATAGT-GGCATCG
1 ATATATGATTTATGTGTAAGACCATGTCTGGGACA-TCGACATCG
*
24021310 ATATATGATTTATGTGTAAGACCATGTCTGGGACATCAACATCG
1 ATATATGATTTATGTGTAAGACCATGTCTGGGACATCGACATCG
24021354 TGTTTCATTT
Statistics
Matches: 71, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
42 24 0.34
43 22 0.31
44 25 0.35
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (44 bp):
ATATATGATTTATGTGTAAGACCATGTCTGGGACATCGACATCG
Found at i:24021373 original size:86 final size:86
Alignment explanation
Indices: 24021224--24021399 Score: 255
Period size: 86 Copynumber: 2.0 Consensus size: 86
24021214 ATGGGATCCA
* * * **
24021224 ATATATGATTTATGTGTAAGACTATGTCTGGGACATCGACATCATATTTGATTTCGTGTAAGACC
1 ATATATGATTTATGTGTAAGACCATGTCTGGGACATCAACATCATATTTCATTTCGTACAAGACC
* *
24021289 CTGTCTGGGATAGTGGCATCG
66 CTGTCTGGGACAATGGCATCG
* *
24021310 ATATATGATTTATGTGTAAGACCATGTCTGGGACATCAACATCGTGTTTCATTT-GATACAAGAC
1 ATATATGATTTATGTGTAAGACCATGTCTGGGACATCAACATCATATTTCATTTCG-TACAAGAC
24021374 CCTGTCTGGGACAATGGCATCG
65 CCTGTCTGGGACAATGGCATCG
24021396 ATAT
1 ATAT
24021400 TGGATTAACG
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
85 1 0.01
86 79 0.99
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (86 bp):
ATATATGATTTATGTGTAAGACCATGTCTGGGACATCAACATCATATTTCATTTCGTACAAGACC
CTGTCTGGGACAATGGCATCG
Found at i:24028945 original size:42 final size:44
Alignment explanation
Indices: 24028886--24029080 Score: 215
Period size: 42 Copynumber: 4.5 Consensus size: 44
24028876 ATAGGATTCC
* * * *
24028886 ATATATGATTTACGTGTAAGACGATTTCTGGGACA-TCAGCATCG
1 ATATTTGATTTACGTGTAAGACCATGTCTGGGACAGT-GGCATCG
* *
24028930 -TATTTGATTT-CGTGTAAGACCCTGTCTGGGATAGTGGCATCG
1 ATATTTGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCG
* *
24028972 ATATATGATTTACGTGTAAGACCATGTCTGGGACA-TCGACATCG
1 ATATTTGATTTACGTGTAAGACCATGTCTGGGACAGT-GGCATCG
* *
24029016 -TATTTGATTT-CGTGTAAGACCCTATCTGGGACAGTGGCATCG
1 ATATTTGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCG
* *
24029058 ATATTTGA-TTACATGTAAAACCA
1 ATATTTGATTTACGTGTAAGACCA
24029081 CGACTGAGAC
Statistics
Matches: 127, Mismatches: 17, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
42 54 0.43
43 46 0.36
44 27 0.21
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (44 bp):
ATATTTGATTTACGTGTAAGACCATGTCTGGGACAGTGGCATCG
Found at i:24029031 original size:86 final size:86
Alignment explanation
Indices: 24028886--24029080 Score: 304
Period size: 86 Copynumber: 2.3 Consensus size: 86
24028876 ATAGGATTCC
* *
24028886 ATATATGATTTACGTGTAAGACGATTTCTGGGACATCAGCATCGTATTTGATTTCGTGTAAGACC
1 ATATATGATTTACGTGTAAGACCATGTCTGGGACATCAGCATCGTATTTGATTTCGTGTAAGACC
* *
24028951 CTGTCTGGGATAGTGGCATCG
66 CTATCTGGGACAGTGGCATCG
24028972 ATATATGATTTACGTGTAAGACCATGTCTGGGACATC-GACATCGTATTTGATTTCGTGTAAGAC
1 ATATATGATTTACGTGTAAGACCATGTCTGGGACATCAG-CATCGTATTTGATTTCGTGTAAGAC
24029036 CCTATCTGGGACAGTGGCATCG
65 CCTATCTGGGACAGTGGCATCG
* * *
24029058 ATATTTGA-TTACATGTAAAACCA
1 ATATATGATTTACGTGTAAGACCA
24029081 CGACTGAGAC
Statistics
Matches: 101, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
85 14 0.14
86 87 0.86
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (86 bp):
ATATATGATTTACGTGTAAGACCATGTCTGGGACATCAGCATCGTATTTGATTTCGTGTAAGACC
CTATCTGGGACAGTGGCATCG
Found at i:24029113 original size:86 final size:86
Alignment explanation
Indices: 24028935--24029110 Score: 201
Period size: 86 Copynumber: 2.1 Consensus size: 86
24028925 CATCGTATTT
* * * * * *
24028935 GATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCGATATATGATTTACGTGTAAGACCATGTC
1 GATTTCGTGTAAGACCCTATCTGGGACAGTGGCATCGATATATGATTTACATGTAAAACCACGAC
* * ***
24029000 TGGGACATCGACATCGTATTT
66 TGAGACATCGACATCATACGA
*
24029021 GATTTCGTGTAAGACCCTATCTGGGACAGTGGCATCGATATTTGA-TTACATGTAAAACCACGAC
1 GATTTCGTGTAAGACCCTATCTGGGACAGTGGCATCGATATATGATTTACATGTAAAACCACGAC
* * * *
24029085 TGAGACGTTGGCATTATACGA
66 TGAGACATCGACATCATACGA
24029106 GATTT
1 GATTT
24029111 TCGAACTATC
Statistics
Matches: 74, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
85 32 0.43
86 42 0.57
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (86 bp):
GATTTCGTGTAAGACCCTATCTGGGACAGTGGCATCGATATATGATTTACATGTAAAACCACGAC
TGAGACATCGACATCATACGA
Found at i:24036203 original size:17 final size:19
Alignment explanation
Indices: 24036161--24036205 Score: 58
Period size: 17 Copynumber: 2.5 Consensus size: 19
24036151 ACTTAGGTTG
*
24036161 TTGTGGGCCCTGATGGGCC
1 TTGTGGGCCCTAATGGGCC
*
24036180 GTGTGGGCCC-AATGGG-C
1 TTGTGGGCCCTAATGGGCC
24036197 TTGTGGGCC
1 TTGTGGGCC
24036206 TCACACGGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 9 0.39
18 5 0.22
19 9 0.39
ACGTcount: A:0.07, C:0.24, G:0.44, T:0.24
Consensus pattern (19 bp):
TTGTGGGCCCTAATGGGCC
Found at i:24036649 original size:27 final size:26
Alignment explanation
Indices: 24036611--24036678 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 26
24036601 AAGTGTATTG
* *
24036611 TACTGGTGGCTTTGCCACATATACTGT
1 TACTGGTAGCTTTGCCACAT-TACTGA
** *
24036638 TACTGGTAGCTTTGCTGCGTTACTGA
1 TACTGGTAGCTTTGCCACATTACTGA
*
24036664 TACTGGCAGCTTTGC
1 TACTGGTAGCTTTGC
24036679 TGTGATATTA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
26 19 0.54
27 16 0.46
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.37
Consensus pattern (26 bp):
TACTGGTAGCTTTGCCACATTACTGA
Found at i:24036712 original size:26 final size:26
Alignment explanation
Indices: 24036637--24036713 Score: 102
Period size: 26 Copynumber: 3.0 Consensus size: 26
24036627 ACATATACTG
* * *
24036637 TTACTGGTAGCTTTGCTGCGTTACTGA
1 TTACTGGCAGCTTTGCTGCGATA-TTA
*
24036664 -TACTGGCAGCTTTGCTGTGATATTA
1 TTACTGGCAGCTTTGCTGCGATATTA
24036689 TTACTGGCAGCTTTGCTGCGATATT
1 TTACTGGCAGCTTTGCTGCGATATT
24036714 GGTGTATTGG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
25 2 0.05
26 42 0.95
ACGTcount: A:0.17, C:0.18, G:0.25, T:0.40
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGCGATATTA
Found at i:24040389 original size:26 final size:27
Alignment explanation
Indices: 24040335--24040389 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
24040325 ATGACCAAAA
*
24040335 TACCCCTAAAGGGTAAAATGAATGTTT
1 TACCCCTAAAGGGTAAAATGAATGATT
** *
24040362 TACCCCTCGAGGGT-AAATGACTGATT
1 TACCCCTAAAGGGTAAAATGAATGATT
24040388 TA
1 TA
24040390 TGCTATGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (27 bp):
TACCCCTAAAGGGTAAAATGAATGATT
Found at i:24040547 original size:26 final size:26
Alignment explanation
Indices: 24040517--24040597 Score: 90
Period size: 26 Copynumber: 3.1 Consensus size: 26
24040507 TTTGCCACAT
24040517 ATACTGTTACTGGCAGCTTTGCTGTG
1 ATACTGTTACTGGCAGCTTTGCTGTG
* * * ** *
24040543 TTACTGATATTAACAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCTTTGCTGTG
* *
24040569 ATATTATTACTGGCAGCTTTGCTGTG
1 ATACTGTTACTGGCAGCTTTGCTGTG
24040595 ATA
1 ATA
24040598 TCAGTGTGTT
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCTTTGCTGTG
Found at i:24040778 original size:28 final size:28
Alignment explanation
Indices: 24040747--24040822 Score: 143
Period size: 28 Copynumber: 2.7 Consensus size: 28
24040737 TGTTCCATAA
24040747 TGGGCTCAGGCCCAGACTGTTACTAATC
1 TGGGCTCAGGCCCAGACTGTTACTAATC
24040775 TGGGCTCAGGCCCAGACTGTTACTAATC
1 TGGGCTCAGGCCCAGACTGTTACTAATC
*
24040803 TGGGCTTAGGCCCAGACTGT
1 TGGGCTCAGGCCCAGACTGT
24040823 GTTATTCACT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.25
Consensus pattern (28 bp):
TGGGCTCAGGCCCAGACTGTTACTAATC
Found at i:24041665 original size:42 final size:42
Alignment explanation
Indices: 24041606--24041685 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
24041596 GCTATCTTCA
24041606 ACTCATCGCCTTCTCGCATTCGAATAC-GGTGGTAACCGTTCC
1 ACTCATCGCCTTCTCGCATTCGAAT-CTGGTGGTAACCGTTCC
*
24041648 ACTCATCGCCTTCTCGCATTCTAATCTGGTGGTAACCG
1 ACTCATCGCCTTCTCGCATTCGAATCTGGTGGTAACCG
24041686 CTCTTCAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
41 1 0.03
42 35 0.97
ACGTcount: A:0.19, C:0.33, G:0.19, T:0.30
Consensus pattern (42 bp):
ACTCATCGCCTTCTCGCATTCGAATCTGGTGGTAACCGTTCC
Found at i:24044730 original size:42 final size:43
Alignment explanation
Indices: 24044679--24044784 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 43
24044669 TATGATTTAT
*
24044679 GTGTAAGACCATGTATGGGACA-TCGAAGTCG-TATTTGATTTC
1 GTGTAAGACCATGTATGGGACAGTCGAA-TCGATATTTGATTAC
* * * * *
24044721 GTGTAAGACCCTATTTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTATGGGACAGTCGAATCGATATTTGATTAC
* * *
24044764 ATGTAAGACCACGTCTGGGAC
1 GTGTAAGACCATGTATGGGAC
24044785 GTTGGCATTG
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
42 22 0.43
43 29 0.57
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTATGGGACAGTCGAATCGATATTTGATTAC
Found at i:24044783 original size:43 final size:43
Alignment explanation
Indices: 24044621--24044792 Score: 102
Period size: 43 Copynumber: 4.0 Consensus size: 43
24044611 ACATAGGATC
* * * * *
24044621 CGATATGTGATTTCATGTAAGACCACATCTCGGAAATTGGCAT
1 CGATATTTGATTACATGTAAGACCACATCTGGGACAGTGGCAT
* * ** ** * * *
24044664 TGACT-TATGATTTATGTGTAAGACCATGTATGGGACA-TCGAAGT
1 CGA-TATTTGA-TTACATGTAAGACCACATCTGGGACAGTGGCA-T
* * *
24044708 CG-TATTTGATTTCGTGTAAGACC-CTATTTGGGACAGTGGCAT
1 CGATATTTGATTACATGTAAGACCAC-ATCTGGGACAGTGGCAT
*
24044750 CGATATTTGATTACATGTAAGACCACGTCTGGGAC-GTTGGCAT
1 CGATATTTGATTACATGTAAGACCACATCTGGGACAG-TGGCAT
24044793 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 25, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
42 25 0.26
43 48 0.51
44 22 0.23
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTACATGTAAGACCACATCTGGGACAGTGGCAT
Found at i:24046482 original size:68 final size:67
Alignment explanation
Indices: 24046410--24046584 Score: 173
Period size: 67 Copynumber: 2.6 Consensus size: 67
24046400 CATCATGTGT
* * * * *
24046410 ACAAGAGAGCTACGAGGCATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACGAGG-A-TAT-ATGTAGCTAGGTCCCATGCGTGATACCAGTGAAGGACACCA
24046473 TGTAG
63 TGTAG
* * *
24046478 ACAAGAGAGCTACG-GGATATATGTTGCTAGGTCCCATGCGTGGTTCCAGGTGAAGGACACCATG
1 ACAAGAGAGCTACGAGGATATATGTAGCTAGGTCCCATGCGTGATACCA-GTGAAGGACACCATG
24046542 TAG
65 TAG
* *
24046545 ACAAGAGAGCTACGA-GATAAACTG--GCTAGGTCACATGCGT
1 ACAAGAGAGCTACGAGGATATA-TGTAGCTAGGTCCCATGCGT
24046585 AGTACTAAGT
Statistics
Matches: 92, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
64 22 0.24
65 3 0.03
66 18 0.20
67 33 0.36
68 16 0.17
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGAGGATATATGTAGCTAGGTCCCATGCGTGATACCAGTGAAGGACACCATGT
AG
Found at i:24050502 original size:10 final size:10
Alignment explanation
Indices: 24050457--24050492 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
24050447 AAAAATTAAA
24050457 TTTTTTTCAC
1 TTTTTTTCAC
24050467 TTTTTTT-AGC
1 TTTTTTTCA-C
24050477 TTTTTTTCAC
1 TTTTTTTCAC
24050487 TTTTTT
1 TTTTTT
24050493 CGCTTGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 1 0.04
10 22 0.92
11 1 0.04
ACGTcount: A:0.08, C:0.14, G:0.03, T:0.75
Consensus pattern (10 bp):
TTTTTTTCAC
Found at i:24051303 original size:21 final size:21
Alignment explanation
Indices: 24051277--24051319 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
24051267 GGTTCGCTGT
*
24051277 ATTGGATTAGAGGTGTATTGG
1 ATTGGATTAGAGGTGTAATGG
24051298 ATTGGATTAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
24051319 A
1 A
24051320 ATAGAGGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:24051319 original size:16 final size:16
Alignment explanation
Indices: 24051300--24051332 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24051290 TGTATTGGAT
*
24051300 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
24051316 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
24051332 T
1 T
24051333 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:24051377 original size:45 final size:44
Alignment explanation
Indices: 24051311--24051405 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
24051301 GGATTAGAGG
* *
24051311 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
24051356 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
24051400 TGTAAT
1 TGTAAT
24051406 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:24051588 original size:18 final size:17
Alignment explanation
Indices: 24051567--24051601 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24051557 TTATTATTTA
*
24051567 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
24051585 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
24051602 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:24051595 original size:28 final size:27
Alignment explanation
Indices: 24051525--24051597 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
24051515 TTTATTATCA
*
24051525 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
24051553 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
24051580 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
24051598 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:24051714 original size:144 final size:147
Alignment explanation
Indices: 24051486--24051757 Score: 478
Period size: 144 Copynumber: 1.9 Consensus size: 147
24051476 ATGATTATTG
*
24051486 TTATTGTTATTTGAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTA--TATTATCAAAAATAAATAATTTAATCATATTTAA
*
24051551 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
64 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
24051616 AGAAATTTGTTTTGGTAAA
129 AGAAATTTGTTTTGGTAAA
*
24051635 TTATT-TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAAC
1 TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
24051697 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
24051758 ATATTCTTAT
Statistics
Matches: 120, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
144 92 0.77
145 1 0.01
148 22 0.18
149 5 0.04
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
AAATTTGTTTTGGTAAA
Found at i:24051732 original size:18 final size:17
Alignment explanation
Indices: 24051711--24051745 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24051701 TTATTATTAA
*
24051711 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
24051729 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
24051746 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:24057806 original size:40 final size:39
Alignment explanation
Indices: 24057609--24057825 Score: 260
Period size: 40 Copynumber: 5.5 Consensus size: 39
24057599 TGGATGATAA
*
24057609 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTATA-T
* *
24057649 CCGGGCTAAG-CCTGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTACTATAT
* *
24057688 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATAT
* *
24057728 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATAT
*
24057768 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-CTATAT
* * *
24057808 -CTGGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
24057826 TACTTGGTTT
Statistics
Matches: 156, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 48 0.31
40 108 0.69
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTACTATAT
Found at i:24057806 original size:80 final size:80
Alignment explanation
Indices: 24057605--24057825 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 80
24057595 TATTTGGATG
* *
24057605 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAG-CCTGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATA-TCCGGGCTAAGTCCCGAAGG
24057667 CATTTGTGCGAACTACT
64 CATTTGTGCGAACTACT
* * *
24057684 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGCTA-CTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGGCTAAGTCCCGAAGGC
**
24057748 ATTTGTGCGAGTTACT
65 ATTTGTGCGAACTACT
* * * *
24057764 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATAT-CTGGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGG
24057826 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
79 63 0.51
80 61 0.49
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAACTACT
Found at i:24057823 original size:119 final size:119
Alignment explanation
Indices: 24057609--24057825 Score: 305
Period size: 119 Copynumber: 1.8 Consensus size: 119
24057599 TGGATGATAA
* * * *
24057609 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCTGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGA
*
24057674 GCGAACTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
66 GCGAACTACTATATCCGAGCTAAATCCCGAAGGCATTTGTGCGAGCTACTATAT
*
24057728 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCATTT
* * *
24057792 GAGC-AAGTAGCTATATCTG-GCTAAATTCCGAAGG
64 GAGCGAACTA-CTATATCCGAGCTAAATCCCGAAGG
24057826 TACTTGGTTT
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
118 2 0.02
119 61 0.71
120 23 0.27
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGA
GCGAACTACTATATCCGAGCTAAATCCCGAAGGCATTTGTGCGAGCTACTATAT
Found at i:24070468 original size:14 final size:15
Alignment explanation
Indices: 24070419--24070468 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
24070409 GTATCTTGGG
*
24070419 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
24070434 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
24070449 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
24070463 TTTCTT
1 TTTCTT
24070469 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:24081675 original size:41 final size:40
Alignment explanation
Indices: 24081548--24081692 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
24081538 CTCGCACAAG
* * * * * *
24081548 GCCTTCGGGTCTTAACCCAGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
24081588 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
24081628 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
24081669 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
24081693 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:24083774 original size:18 final size:19
Alignment explanation
Indices: 24083753--24083816 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 19
24083743 TCTGGGTAGG
24083753 CCGTGTGGTCT-CACACGC
1 CCGTGTGGTCTGCACACGC
* *
24083771 CCGTGTGACTCTGGACACGC
1 CCGTGTG-GTCTGCACACGC
*
24083791 CCGTGTGGCTCTGGACACGC
1 CCGTGTGG-TCTGCACACGC
*
24083811 TCGTGT
1 CCGTGT
24083817 CCTCAACCCG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
18 7 0.18
19 3 0.08
20 29 0.74
ACGTcount: A:0.11, C:0.34, G:0.31, T:0.23
Consensus pattern (19 bp):
CCGTGTGGTCTGCACACGC
Found at i:24083790 original size:20 final size:20
Alignment explanation
Indices: 24083765--24083816 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
24083755 GTGTGGTCTC
24083765 ACACGCCCGTGTGACTCTGG
1 ACACGCCCGTGTGACTCTGG
*
24083785 ACACGCCCGTGTGGCTCTGG
1 ACACGCCCGTGTGACTCTGG
*
24083805 ACACGCTCGTGT
1 ACACGCCCGTGT
24083817 CCTCAACCCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.13, C:0.35, G:0.31, T:0.21
Consensus pattern (20 bp):
ACACGCCCGTGTGACTCTGG
Found at i:24085746 original size:50 final size:50
Alignment explanation
Indices: 24085683--24085960 Score: 328
Period size: 50 Copynumber: 5.5 Consensus size: 50
24085673 TGGTATGCAA
* *
24085683 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACGT
* * * *
24085733 AGTAGCCTGCACTTAGTACTAAACACGTGACCTAACCATCTGATAAACGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACGT
* * * * *
24085783 AGTAGCCTGCACTTAGTACTACACACGTGATCGAAGATATC-GAGTACGCAT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACA-ATCTG-GTACACGT
* *
24085834 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACGT
* * *
24085884 AGTAGCCTGCACTTATTACTACACACGTGACCTAA-AA-CTGTCTTAAACACAT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG--GT--ACACGT
*
24085936 AGTAGCCTGCACATAGTACTACACA
1 AGTAGCCTGCACTTAGTACTACACA
24085961 TGTGTTCTCA
Statistics
Matches: 192, Mismatches: 29, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
48 3 0.02
49 2 0.01
50 119 0.62
51 40 0.21
52 28 0.15
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (50 bp):
AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACGT
Found at i:24085866 original size:101 final size:102
Alignment explanation
Indices: 24085683--24085962 Score: 352
Period size: 101 Copynumber: 2.8 Consensus size: 102
24085673 TGGTATGCAA
* * * *
24085683 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACA-ATCTG-GTACACGTAGTAGCCTGCACT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAAAATATCTGAGTACACATAGTAGCCTGCACT
* * * *
24085746 TAGTACTAAACACGTGACCTAACCATCTGATAAACGT
66 TAGTACTACACATGCGACCTAACAATCTGATAAACGT
* * * *
24085783 AGTAGCCTGCACTTAGTACTACACACGTGATCGAAGATATC-GAGTACGCATAGTAGCCTGCACT
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAAAATATCTGAGTACACATAGTAGCCTGCACT
* *
24085847 TAGTACTACACATGCGACCTAACAATCTGGTACACGT
66 TAGTACTACACATGCGACCTAACAATCTGATAAACGT
* * * *
24085884 AGTAGCCTGCACTTATTACTACACACGTGACCTAAAACTGTCTTA-AACACATAGTAGCCTGCAC
1 AGTAGCCTGCACTTAGTACTACACACGTGACCTAAAA-TATCTGAGTACACATAGTAGCCTGCAC
*
24085948 ATAGTACTACACATG
65 TTAGTACTACACATG
24085963 TGTTCTCACA
Statistics
Matches: 154, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
100 33 0.21
101 86 0.56
102 34 0.22
103 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (102 bp):
AGTAGCCTGCACTTAGTACTACACACGTGACCTAAAATATCTGAGTACACATAGTAGCCTGCACT
TAGTACTACACATGCGACCTAACAATCTGATAAACGT
Found at i:24086772 original size:30 final size:30
Alignment explanation
Indices: 24086731--24086787 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
24086721 AAAACCATAT
24086731 TTTGGCAAAATTACA-TTTTTACCCCTAAAC
1 TTTGGCAAAATTACACTTTTT-CCCCTAAAC
*
24086761 TTTGTCAAAATTACACTTTTTCCCCTA
1 TTTGGCAAAATTACACTTTTTCCCCTA
24086788 GGCTTGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (30 bp):
TTTGGCAAAATTACACTTTTTCCCCTAAAC
Found at i:24090810 original size:27 final size:27
Alignment explanation
Indices: 24090690--24090830 Score: 113
Period size: 27 Copynumber: 5.3 Consensus size: 27
24090680 TAGGGTCGTT
* * * *
24090690 AATACCCTCGATTTGTGAAATTATCGA
1 AATACCCCCAATTTGTAAAATTACCGA
* * ** *
24090717 AATACCCCTAGTTTACAAAATTACCAA
1 AATACCCCCAATTTGTAAAATTACCGA
* *
24090744 AATA-CCCCAACTTGTAAATTTACCGA
1 AATACCCCCAATTTGTAAAATTACCGA
* *
24090770 GATACCCCCGATTTGTAAAATTACCGA
1 AATACCCCCAATTTGTAAAATTACCGA
* * * * *
24090797 TATATCCCTAATTTGTGAAATTACCAA
1 AATACCCCCAATTTGTAAAATTACCGA
24090824 AATACCC
1 AATACCC
24090831 TTGTATGTGT
Statistics
Matches: 85, Mismatches: 28, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
26 18 0.21
27 67 0.79
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (27 bp):
AATACCCCCAATTTGTAAAATTACCGA
Found at i:24092275 original size:15 final size:15
Alignment explanation
Indices: 24092255--24092285 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
24092245 GGTCATTATG
24092255 AAACATAATGCACAT
1 AAACATAATGCACAT
24092270 AAACATAATGCACAT
1 AAACATAATGCACAT
24092285 A
1 A
24092286 CTTTTGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.19, G:0.06, T:0.19
Consensus pattern (15 bp):
AAACATAATGCACAT
Found at i:24097966 original size:68 final size:68
Alignment explanation
Indices: 24097061--24097954 Score: 1770
Period size: 68 Copynumber: 13.1 Consensus size: 68
24097051 ATACTATATA
24097061 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
24097126 AAT
66 AAT
24097129 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
24097194 AAT
66 AAT
24097197 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
24097262 AAT
66 AAT
24097265 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
24097330 AAT
66 AAT
24097333 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
24097398 AAT
66 AAT
24097401 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
24097466 AAT
66 AAT
24097469 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
24097534 AAT
66 AAT
24097537 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
24097602 AAT
66 AAT
24097605 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
24097670 AAT
66 AAT
24097673 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
24097738 AAT
66 AAT
24097741 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
24097806 AAT
66 AAT
24097809 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
24097874 AAT
66 AAT
*
24097877 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
*
24097942 GAT
66 AAT
24097945 GTAGCTAGGT
1 GTAGCTAGGT
24097955 TGCATGAGTG
Statistics
Matches: 824, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 824 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.24
Consensus pattern (68 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTGCGTGAGAGATA
AAT
Found at i:24107074 original size:314 final size:314
Alignment explanation
Indices: 24106505--24107085 Score: 1153
Period size: 314 Copynumber: 1.9 Consensus size: 314
24106495 ACCCGAATCT
*
24106505 GTGAATACCCGGATGTTTTTCCTGAAGGATTACCGGGTTTACCACCTGTTCGGGAGGTAGAGTTT
1 GTGAATACCCGGATGTTTTTCCTGAAGAATTACCGGGTTTACCACCTGTTCGGGAGGTAGAGTTT
24106570 GGTATTGAGCTTGTACCTGGGACTACGCCGATTTCGATAGCTCCGTATCGTATGGCACCAACCGA
66 GGTATTGAGCTTGTACCTGGGACTACGCCGATTTCGATAGCTCCGTATCGTATGGCACCAACCGA
24106635 GTTAAAAGAGTTGAAAGCTCAGTTGCAAGAATTGACGGATAGAGGTTTTGCTCGACCAAGTTTCT
131 GTTAAAAGAGTTGAAAGCTCAGTTGCAAGAATTGACGGATAGAGGTTTTGCTCGACCAAGTTTCT
24106700 CACCTTGGGGTGCACCAGTATTGTTCGTGAAAAAGAAGGACGGAACAATGAGGTTGTGCATTGAC
196 CACCTTGGGGTGCACCAGTATTGTTCGTGAAAAAGAAGGACGGAACAATGAGGTTGTGCATTGAC
24106765 TATCGTCTGATGACAAAGAATTAGAAAAGAAACCCGAATCTGTGCCGATGGTTC
261 TATCGTCTGATGACAAAGAATTAGAAAAGAAACCCGAATCTGTGCCGATGGTTC
24106819 GTGAATACCCGGATGTTTTTCCTGAAGAATTACCGGGTTTACCACCTGTTCGGGAGGTAGAGTTT
1 GTGAATACCCGGATGTTTTTCCTGAAGAATTACCGGGTTTACCACCTGTTCGGGAGGTAGAGTTT
24106884 GGTATTGAGCTTGTACCTGGGACTACGCCGATTTCGATAGCTCCGTATCGTATGGCACCAACCGA
66 GGTATTGAGCTTGTACCTGGGACTACGCCGATTTCGATAGCTCCGTATCGTATGGCACCAACCGA
24106949 GTTAAAAGAGTTGAAAGCTCAGTTGCAAGAATTGACGGATAGAGGTTTTGCTCGACCAAGTTTCT
131 GTTAAAAGAGTTGAAAGCTCAGTTGCAAGAATTGACGGATAGAGGTTTTGCTCGACCAAGTTTCT
24107014 CACCTTGGGGTGCACCAGTATTGTTCGTGAAAAAGAAGGACGGAACAATGAGGTTGTGCATTGAC
196 CACCTTGGGGTGCACCAGTATTGTTCGTGAAAAAGAAGGACGGAACAATGAGGTTGTGCATTGAC
24107079 TATCGTC
261 TATCGTC
24107086 AACTGAATAA
Statistics
Matches: 266, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
314 266 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (314 bp):
GTGAATACCCGGATGTTTTTCCTGAAGAATTACCGGGTTTACCACCTGTTCGGGAGGTAGAGTTT
GGTATTGAGCTTGTACCTGGGACTACGCCGATTTCGATAGCTCCGTATCGTATGGCACCAACCGA
GTTAAAAGAGTTGAAAGCTCAGTTGCAAGAATTGACGGATAGAGGTTTTGCTCGACCAAGTTTCT
CACCTTGGGGTGCACCAGTATTGTTCGTGAAAAAGAAGGACGGAACAATGAGGTTGTGCATTGAC
TATCGTCTGATGACAAAGAATTAGAAAAGAAACCCGAATCTGTGCCGATGGTTC
Found at i:24114567 original size:218 final size:218
Alignment explanation
Indices: 24114189--24114625 Score: 874
Period size: 218 Copynumber: 2.0 Consensus size: 218
24114179 GTGTCGGACT
24114189 ACTTTATATTGGACCGAGCTTAGTGAGAAACAGATTCACGGAGTTGATCTAGTTAAAGAAACCGA
1 ACTTTATATTGGACCGAGCTTAGTGAGAAACAGATTCACGGAGTTGATCTAGTTAAAGAAACCGA
24114254 AGAGAAAATAAAAGTAATTCGGGATTGCTTGAAAGCTGCTTCAGATCGACAAAAGTCATATGCAG
66 AGAGAAAATAAAAGTAATTCGGGATTGCTTGAAAGCTGCTTCAGATCGACAAAAGTCATATGCAG
24114319 ATTTAAAAAGAAAAGAGATTGAATTTTAGGTGGGTGATAAAGTGTTCTTGAAGGTGTCACCATGG
131 ATTTAAAAAGAAAAGAGATTGAATTTTAGGTGGGTGATAAAGTGTTCTTGAAGGTGTCACCATGG
24114384 AAAAAGATTATGAGATTTAGCCA
196 AAAAAGATTATGAGATTTAGCCA
24114407 ACTTTATATTGGACCGAGCTTAGTGAGAAACAGATTCACGGAGTTGATCTAGTTAAAGAAACCGA
1 ACTTTATATTGGACCGAGCTTAGTGAGAAACAGATTCACGGAGTTGATCTAGTTAAAGAAACCGA
24114472 AGAGAAAATAAAAGTAATTCGGGATTGCTTGAAAGCTGCTTCAGATCGACAAAAGTCATATGCAG
66 AGAGAAAATAAAAGTAATTCGGGATTGCTTGAAAGCTGCTTCAGATCGACAAAAGTCATATGCAG
24114537 ATTTAAAAAGAAAAGAGATTGAATTTTAGGTGGGTGATAAAGTGTTCTTGAAGGTGTCACCATGG
131 ATTTAAAAAGAAAAGAGATTGAATTTTAGGTGGGTGATAAAGTGTTCTTGAAGGTGTCACCATGG
24114602 AAAAAGATTATGAGATTTAGCCA
196 AAAAAGATTATGAGATTTAGCCA
24114625 A
1 A
24114626 AAAGGCAAGT
Statistics
Matches: 219, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
218 219 1.00
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (218 bp):
ACTTTATATTGGACCGAGCTTAGTGAGAAACAGATTCACGGAGTTGATCTAGTTAAAGAAACCGA
AGAGAAAATAAAAGTAATTCGGGATTGCTTGAAAGCTGCTTCAGATCGACAAAAGTCATATGCAG
ATTTAAAAAGAAAAGAGATTGAATTTTAGGTGGGTGATAAAGTGTTCTTGAAGGTGTCACCATGG
AAAAAGATTATGAGATTTAGCCA
Found at i:24127798 original size:22 final size:22
Alignment explanation
Indices: 24127770--24127829 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
24127760 TTAATCTGAT
24127770 TATGGCTTTGTGCCAACCTAAA
1 TATGGCTTTGTGCCAACCTAAA
* * * * *
24127792 TATGGCTTTATGCCATCTTGAC
1 TATGGCTTTGTGCCAACCTAAA
*
24127814 TATGGCTTTGTACCAA
1 TATGGCTTTGTGCCAA
24127830 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (22 bp):
TATGGCTTTGTGCCAACCTAAA
Found at i:24128250 original size:32 final size:32
Alignment explanation
Indices: 24128194--24128254 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
24128184 CTTTCACTAT
*
24128194 ATTGGGCTTAGGCCCACTTGTTCTGTTATTGG
1 ATTGGGCTTAGGCCCAATTGTTCTGTTATTGG
*
24128226 ATTGGG-TTATGCCCAATTGATTCTGTTAT
1 ATTGGGCTTAGGCCCAATTG-TTCTGTTAT
24128255 GGGCTGTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 11 0.42
32 15 0.58
ACGTcount: A:0.16, C:0.16, G:0.25, T:0.43
Consensus pattern (32 bp):
ATTGGGCTTAGGCCCAATTGTTCTGTTATTGG
Found at i:24130710 original size:37 final size:37
Alignment explanation
Indices: 24130660--24130738 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24130650 TTATTACGAA
* * *
24130660 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
24130697 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
24130734 GTCTT
1 GTCTT
24130739 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:24130964 original size:49 final size:49
Alignment explanation
Indices: 24130859--24130987 Score: 124
Period size: 49 Copynumber: 2.7 Consensus size: 49
24130849 CTTCGGGACT
* * * *
24130859 TATCACAT-T-TATGCACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
24130906 TGTCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* *
24130955 TATCTC--ATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATATACACT-TTCACATCCATCACAT
24130988 AGAATCCTAA
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
46 1 0.01
47 30 0.45
48 1 0.01
49 35 0.52
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Found at i:24141813 original size:18 final size:18
Alignment explanation
Indices: 24141790--24141826 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
24141780 AGTTTACACA
24141790 CCCGAACCTTCACTTATT
1 CCCGAACCTTCACTTATT
24141808 CCCGAACCTTCACTTATT
1 CCCGAACCTTCACTTATT
24141826 C
1 C
24141827 ATTACATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.41, G:0.05, T:0.32
Consensus pattern (18 bp):
CCCGAACCTTCACTTATT
Found at i:24142026 original size:50 final size:50
Alignment explanation
Indices: 24141951--24142235 Score: 270
Period size: 50 Copynumber: 5.6 Consensus size: 50
24141941 CTCTAGTAAG
* * *
24141951 CATAGTAGCCTACACTTAGTACTACACATGCGACCAAACAATCTGGTTCA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
* * ** * *
24142001 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCTTTTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
* ** * * * * * * *
24142051 CATAATAGCCTAAACTTAGTACTACACACGTGATCGAAGCTATCAGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CAATCTGGTACA
24142102 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
* * ** *
24142152 CGTAGTAGCCTGAACTTAGTACTACACACT-TAACCTAA-AA-CTGTCTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACA-TGCGACCTAACAATCTG--GT--ACA
*
24142204 CATAGTAGCCTGCACATAGTACTACACATGCG
1 CATAGTAGCCTGCACTTAGTACTACACATGCG
24142236 TTCTCATAAT
Statistics
Matches: 188, Mismatches: 40, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
48 3 0.02
49 2 0.01
50 116 0.62
51 39 0.21
52 28 0.15
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
Found at i:24142137 original size:101 final size:100
Alignment explanation
Indices: 24141951--24142180 Score: 289
Period size: 101 Copynumber: 2.3 Consensus size: 100
24141941 CTCTAGTAAG
* * * *
24141951 CATAGTAGCCTACACTTAGTACTACACATGCGACCAAACAATCTGGTTCACATAGTAGCCTGCAC
1 CATAGTAGCCTAAACTTAGTACTACACACGCGACCAAACAATCAGGTACACATAGTAGCCTGCAC
* ** *
24142016 TTAGTACTACACACGTGACCTAACCTTTTGATACA
66 TTAGTACTACACACGCGACCTAACAATCTGATACA
* * * * * *
24142051 CATAATAGCCTAAACTTAGTACTACACACGTGATCGAAGCTATCAGGTACGCATAGTAGCCTGCA
1 CATAGTAGCCTAAACTTAGTACTACACACGCGA-CCAAACAATCAGGTACACATAGTAGCCTGCA
* *
24142116 CTTAGTACTACACATGCGACCTAACAATCTGGTACA
65 CTTAGTACTACACACGCGACCTAACAATCTGATACA
* *
24142152 CGTAGTAGCCTGAACTTAGTACTACACAC
1 CATAGTAGCCTAAACTTAGTACTACACAC
24142181 TTAACCTAAA
Statistics
Matches: 110, Mismatches: 19, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
100 29 0.26
101 81 0.74
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (100 bp):
CATAGTAGCCTAAACTTAGTACTACACACGCGACCAAACAATCAGGTACACATAGTAGCCTGCAC
TTAGTACTACACACGCGACCTAACAATCTGATACA
Found at i:24153648 original size:27 final size:27
Alignment explanation
Indices: 24153607--24153660 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
24153597 TGTCATGTGA
* *
24153607 AATTGAATGGAAAATTATTGTTACATG
1 AATTGAATGGAAAATTACTATTACATG
**
24153634 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGAAAATTACTATTACATG
24153661 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTATTACATG
Found at i:24154002 original size:49 final size:49
Alignment explanation
Indices: 24153907--24154091 Score: 226
Period size: 49 Copynumber: 3.7 Consensus size: 49
24153897 TCTATTGTGA
** *
24153907 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATATGTACTGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATT
* * * * *
24153956 GGTCGCATGTATAGTACTAAGTGCATGCTGCTATGCGTACCCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAA--TT
* * * *
24154007 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATT
**
24154056 GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGC
24154092 ATACTAGATA
Statistics
Matches: 111, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
49 71 0.64
51 40 0.36
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAATT
Found at i:24154090 original size:100 final size:100
Alignment explanation
Indices: 24153909--24154091 Score: 294
Period size: 100 Copynumber: 1.8 Consensus size: 100
24153899 TATTGTGAGG
* *
24153909 TCACATGTGTAGTACTAAGTGCAGGCTACTATATGTACTGGATAATTGGTCGCATGTATAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTATAGTACT
* *
24153974 AAGTGCATGCTGCTATGCGTACCCGATAACTTTGA
66 AAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
* * * *
24154009 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTTGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTATAGTACT
24154074 AAGTGCAGGCTACTATGC
66 AAGTGCAGGCTACTATGC
24154092 ATACTAGATA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 75 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCATGTATAGTACT
AAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
Found at i:24155239 original size:37 final size:37
Alignment explanation
Indices: 24155189--24155264 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
24155179 GTTTGTTATG
24155189 CATGATTGGTAATACATCAGGTAAGTTAAATTCAGGC
1 CATGATTGGTAATACATCAGGTAAGTTAAATTCAGGC
24155226 CATGATTGGTAATACATCAGGTAAGTTAAATTCAGGC
1 CATGATTGGTAATACATCAGGTAAGTTAAATTCAGGC
24155263 CA
1 CA
24155265 GTGGATCATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (37 bp):
CATGATTGGTAATACATCAGGTAAGTTAAATTCAGGC
Found at i:24156757 original size:56 final size:56
Alignment explanation
Indices: 24156696--24156868 Score: 285
Period size: 56 Copynumber: 3.1 Consensus size: 56
24156686 TCTTTTCATT
* *
24156696 TCTTGTTTCAAGCCTACCCTTAGTCCTACAACATTCCCTGCCAACCTGAACATTAA
1 TCTTGTTTCAAGCCTACCCTTAGTCCTACAACATTCCCTACCAACCCGAACATTAA
24156752 TCTTGTTTCAAGCCTACCCTTAGTCCTACAACATTCCCTACC-ACCACGAACATTAA
1 TCTTGTTTCAAGCCTACCCTTAGTCCTACAACATTCCCTACCAACC-CGAACATTAA
* * *
24156808 TCTTGTTTCAAGCCTACCCTTGGTCCAACAACATTCCCTACCAACCCGGACATTAA
1 TCTTGTTTCAAGCCTACCCTTAGTCCTACAACATTCCCTACCAACCCGAACATTAA
24156864 TCTTG
1 TCTTG
24156869 CAAGCTGACC
Statistics
Matches: 110, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
55 3 0.03
56 104 0.95
57 3 0.03
ACGTcount: A:0.27, C:0.35, G:0.09, T:0.29
Consensus pattern (56 bp):
TCTTGTTTCAAGCCTACCCTTAGTCCTACAACATTCCCTACCAACCCGAACATTAA
Found at i:24158736 original size:25 final size:25
Alignment explanation
Indices: 24158684--24158736 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
24158674 GAAAAAGTAC
* * *
24158684 AAGATAAAAAAGATTGAAAAAGAGA
1 AAGATAAAAAAGATGGAAAAAAAAA
24158709 AAGATAAGAAAA-ATGGAAAAAAAAA
1 AAGATAA-AAAAGATGGAAAAAAAAA
24158734 AAG
1 AAG
24158737 GAAAAAGTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.09
Consensus pattern (25 bp):
AAGATAAAAAAGATGGAAAAAAAAA
Done.