Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 80 of 279
Found at i:26603310 original size:31 final size:30
Alignment explanation
Indices: 26603258--26603340 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 30
26603248 CGCTTACAGT
*
26603258 AAAGGCTTCAG-CCAGTTATATGATTTATGA
1 AAAGGCTTCGGCCCAG-TATATGATTTATGA
26603288 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGT-ATATGATTTATGA
*
26603319 AAAGGCTTCGGCTCAGTATATG
1 AAAGGCTTCGGCCCAGTATATG
26603341 TGGAGACTGA
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
30 16 0.33
31 33 0.67
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGATTTATGA
Found at i:26607469 original size:20 final size:20
Alignment explanation
Indices: 26607444--26607488 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
26607434 AGGGACTAAA
* *
26607444 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
26607464 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
26607484 ATGAA
1 ATGAA
26607489 TACATATGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:26609240 original size:29 final size:29
Alignment explanation
Indices: 26609198--26609262 Score: 130
Period size: 29 Copynumber: 2.2 Consensus size: 29
26609188 GTGTCTCAAC
26609198 CGTGTGTGCCACACAGCCTAGAACACGGA
1 CGTGTGTGCCACACAGCCTAGAACACGGA
26609227 CGTGTGTGCCACACAGCCTAGAACACGGA
1 CGTGTGTGCCACACAGCCTAGAACACGGA
26609256 CGTGTGT
1 CGTGTGT
26609263 CTTGGCCGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.25, C:0.29, G:0.29, T:0.17
Consensus pattern (29 bp):
CGTGTGTGCCACACAGCCTAGAACACGGA
Found at i:26609970 original size:29 final size:25
Alignment explanation
Indices: 26609917--26609966 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
26609907 TGATGGTTGA
26609917 ATGTTGAATCTTGGTTTTCTTTCTT
1 ATGTTGAATCTTGGTTTTCTTTCTT
26609942 ATGTTGAATCTTGGTTTTCTTTCTT
1 ATGTTGAATCTTGGTTTTCTTTCTT
26609967 TCTTTCATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.12, C:0.12, G:0.16, T:0.60
Consensus pattern (25 bp):
ATGTTGAATCTTGGTTTTCTTTCTT
Found at i:26612614 original size:25 final size:25
Alignment explanation
Indices: 26612580--26612649 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
26612570 AATAGTTAAT
26612580 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
26612605 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
26612630 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
26612650 GCACAACATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:26613170 original size:30 final size:30
Alignment explanation
Indices: 26613136--26613196 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
26613126 TCCTTAACTC
26613136 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
26613166 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
26613196 A
1 A
26613197 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:26620477 original size:5 final size:5
Alignment explanation
Indices: 26620467--26620493 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26620457 TTTCGTGTCC
26620467 TTTGT TTTGT TTTGT TTTGT TTTGT TT
1 TTTGT TTTGT TTTGT TTTGT TTTGT TT
26620494 CGTAGTAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (5 bp):
TTTGT
Found at i:26636317 original size:49 final size:49
Alignment explanation
Indices: 26636251--26636495 Score: 310
Period size: 49 Copynumber: 4.9 Consensus size: 49
26636241 TAGCCAAAGC
* * * *
26636251 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* *
26636300 TATCCGGTACATGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* *
26636349 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC-AAT
* * * *
26636399 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCATAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCA-A-T
* * * * *
26636450 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
26636496 TCACAATAGA
Statistics
Matches: 170, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 87 0.51
50 46 0.27
51 37 0.22
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
Found at i:26636484 original size:101 final size:98
Alignment explanation
Indices: 26636251--26636495 Score: 319
Period size: 99 Copynumber: 2.5 Consensus size: 98
26636241 TAGCCAAAGC
* * * ** * *
26636251 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACATGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
*
26636316 TAGCCTGCACTTAGTACTACACATGTGACCAAT
66 TAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * * *
26636349 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTA
*
26636414 GTAGCCTGCACTTAGTACTACACACGTGATCATAGT
65 GTAGCCTGCACTTAGTACTACACACGTGACCA-A-T
* *
26636450 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
26636496 TCACAATAGA
Statistics
Matches: 126, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 41 0.33
99 43 0.34
100 1 0.01
101 41 0.33
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (98 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
TAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:26640569 original size:42 final size:42
Alignment explanation
Indices: 26640508--26640634 Score: 152
Period size: 42 Copynumber: 3.0 Consensus size: 42
26640498 CTTCGTTTTC
** *
26640508 TCGATGCCATAGTTCAACTATGGTTTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTTTTACACATATTCACAT-A
*
26640551 T-GATGCCATAGCCCAACTATGGTTTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTTTTACACATATTCACATA
* * *
26640592 TCGATGCCATAGCCTAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAACTATGGTTTTACAC-ATATTCACATA
26640633 TC
1 TC
26640635 TCACTGATGC
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
41 10 0.14
42 62 0.84
43 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.32
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTTTTACACATATTCACATA
Found at i:26640694 original size:47 final size:47
Alignment explanation
Indices: 26640591--26641467 Score: 1661
Period size: 47 Copynumber: 18.7 Consensus size: 47
26640581 ATATTCATAT
* * * * * *
26640591 ATCGATGCCATAGCCTAGCTATGGTCTTACACGAATCA-CATATCTCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATAC-AGT-AGCATATATCAC
26640639 -T-GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26640684 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26640731 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26640778 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26640825 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26640872 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26640919 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26640966 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26641013 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26641060 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26641107 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26641154 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26641201 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26641248 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26641295 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26641342 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26641389 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
26641436 ATCGATGCCATATCCCAGATATGGTCTTATAC
1 ATCGATGCCATATCCCAGATATGGTCTTATAC
26641468 GGAAATCACT
Statistics
Matches: 820, Mismatches: 6, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
44 1 0.00
45 11 0.01
46 26 0.03
47 782 0.95
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.30
Consensus pattern (47 bp):
ATCGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCAC
Found at i:26641547 original size:32 final size:32
Alignment explanation
Indices: 26641511--26641864 Score: 565
Period size: 32 Copynumber: 11.2 Consensus size: 32
26641501 GCTACAACTA
26641511 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
1 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
26641543 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
1 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
26641575 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
1 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
26641607 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
1 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
26641639 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
1 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
26641671 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
1 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
26641703 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
1 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
*
26641735 TTCACTGATCAGGTAGCCGGAGCTACCA-CTT
1 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
* * *
26641766 TTCACTGATCAGGAAGCTGGAACTACCGA--TT
1 TTCACTGATCAGGTAGCCGGAGCTACC-ATTTT
* * *
26641797 TTCACTGATCAGGTAGCAGAAGCTACCA-CTT
1 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
* * * *
26641828 TTCACTGATCAAGTAGCTGAAGCTACCA-CTT
1 TTCACTGATCAGGTAGCCGGAGCTACCATTTT
26641859 TTCACT
1 TTCACT
26641865 TGTCATTTGT
Statistics
Matches: 310, Mismatches: 10, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
30 1 0.00
31 88 0.28
32 221 0.71
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (32 bp):
TTCACTGATCAGGTAGCCGGAGCTACCATTTT
Found at i:26641946 original size:50 final size:51
Alignment explanation
Indices: 26641840--26641968 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
26641830 CACTGATCAA
* * *
26641840 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
* *
26641891 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATTAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGT
26641941 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
26641969 TGCCATGGTC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 44 0.62
51 27 0.38
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGT
Found at i:26649021 original size:22 final size:21
Alignment explanation
Indices: 26648995--26649035 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
26648985 CGTAATAAAC
26648995 CCAAAA-AAAATAAATTAAAAAA
1 CCAAAATAAAA-AAA-TAAAAAA
26649017 CCAAAATAAAAAAATAAAA
1 CCAAAATAAAAAAATAAAA
26649036 GGTCCAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 9 0.50
23 4 0.22
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (21 bp):
CCAAAATAAAAAAATAAAAAA
Found at i:26650752 original size:18 final size:18
Alignment explanation
Indices: 26650709--26650752 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
26650699 CTTTTTTATT
26650709 TATTTGTATAATATTTCA
1 TATTTGTATAATATTTCA
* * * *
26650727 TCTATGTATATTGTTTCA
1 TATTTGTATAATATTTCA
26650745 TATTTGTA
1 TATTTGTA
26650753 ACCTTGATTT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.27, C:0.07, G:0.09, T:0.57
Consensus pattern (18 bp):
TATTTGTATAATATTTCA
Found at i:26655399 original size:19 final size:18
Alignment explanation
Indices: 26655361--26655400 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
26655351 ATCTAAAAAG
*
26655361 AAAAATAAAAAAGTACAA
1 AAAAATAAAAAAGAACAA
*
26655379 AAAAATAAAAAAAGAATAA
1 AAAAAT-AAAAAAGAACAA
26655398 AAA
1 AAA
26655401 GAAGAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.82, C:0.03, G:0.05, T:0.10
Consensus pattern (18 bp):
AAAAATAAAAAAGAACAA
Found at i:26655961 original size:9 final size:9
Alignment explanation
Indices: 26655947--26656037 Score: 60
Period size: 9 Copynumber: 9.9 Consensus size: 9
26655937 ATGAGAACTT
26655947 AAAAAAATA
1 AAAAAAATA
26655956 AAAAAAATA
1 AAAAAAATA
*
26655965 AAAAGGAA-A
1 AAAA-AAATA
* *
26655974 AAAACAATC
1 AAAAAAATA
*
26655983 AAAAAAAGA
1 AAAAAAATA
26655992 AAAATAAA-A
1 AAAA-AAATA
*
26656001 AAAAGAATCA
1 AAAAAAAT-A
* *
26656011 ATCAAAAATT
1 A-AAAAAATA
*
26656021 GAAAAAATA
1 AAAAAAATA
26656030 AAAAAAAT
1 AAAAAAAT
26656038 GAGAGGTCAA
Statistics
Matches: 62, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
8 4 0.06
9 46 0.74
10 7 0.11
11 5 0.08
ACGTcount: A:0.79, C:0.04, G:0.05, T:0.11
Consensus pattern (9 bp):
AAAAAAATA
Found at i:26655986 original size:27 final size:26
Alignment explanation
Indices: 26655947--26656037 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 26
26655937 ATGAGAACTT
* *
26655947 AAAAAAATAAAAAAAATAAAAAGGAAA
1 AAAAAAATCAAAAAAAGAAAAA-GAAA
* *
26655974 AAAACAATCAAAAAAAGAAAAATAAA
1 AAAAAAATCAAAAAAAGAAAAAGAAA
*
26656000 AAAAAGAATCAATCAAAAATTGAAAAA-ATA
1 AAAAA-AATCAA--AAAAA--GAAAAAGAAA
26656030 AAAAAAAT
1 AAAAAAAT
26656038 GAGAGGTCAA
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
26 7 0.13
27 25 0.47
29 8 0.15
30 7 0.13
31 6 0.11
ACGTcount: A:0.79, C:0.04, G:0.05, T:0.11
Consensus pattern (26 bp):
AAAAAAATCAAAAAAAGAAAAAGAAA
Found at i:26655989 original size:15 final size:15
Alignment explanation
Indices: 26655971--26656018 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 15
26655961 AATAAAAAGG
26655971 AAAAAAACAATCAAA
1 AAAAAAACAATCAAA
26655986 AAAAGAAA-AAT-AAA
1 AAAA-AAACAATCAAA
26656000 AAAAAGAATCAATCAAA
1 AAAAA-AA-CAATCAAA
26656017 AA
1 AA
26656019 TTGAAAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
13 1 0.04
14 9 0.32
15 7 0.25
16 6 0.21
17 5 0.18
ACGTcount: A:0.79, C:0.08, G:0.04, T:0.08
Consensus pattern (15 bp):
AAAAAAACAATCAAA
Found at i:26657238 original size:114 final size:114
Alignment explanation
Indices: 26657098--26657326 Score: 458
Period size: 114 Copynumber: 2.0 Consensus size: 114
26657088 GATTCATTTC
26657098 AATCATAGCATTCTAATTATTTAGCATAAGCATAGATACATGAAACTGAGTCTATAGGACATGTC
1 AATCATAGCATTCTAATTATTTAGCATAAGCATAGATACATGAAACTGAGTCTATAGGACATGTC
26657163 TCAGAGGACGGTGTAGTAACATCTGTGAAGTCAGGTCTTATCTCCCTGA
66 TCAGAGGACGGTGTAGTAACATCTGTGAAGTCAGGTCTTATCTCCCTGA
26657212 AATCATAGCATTCTAATTATTTAGCATAAGCATAGATACATGAAACTGAGTCTATAGGACATGTC
1 AATCATAGCATTCTAATTATTTAGCATAAGCATAGATACATGAAACTGAGTCTATAGGACATGTC
26657277 TCAGAGGACGGTGTAGTAACATCTGTGAAGTCAGGTCTTATCTCCCTGA
66 TCAGAGGACGGTGTAGTAACATCTGTGAAGTCAGGTCTTATCTCCCTGA
26657326 A
1 A
26657327 GTTGCAATGG
Statistics
Matches: 115, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 115 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (114 bp):
AATCATAGCATTCTAATTATTTAGCATAAGCATAGATACATGAAACTGAGTCTATAGGACATGTC
TCAGAGGACGGTGTAGTAACATCTGTGAAGTCAGGTCTTATCTCCCTGA
Found at i:26657512 original size:44 final size:43
Alignment explanation
Indices: 26657450--26658108 Score: 190
Period size: 44 Copynumber: 14.6 Consensus size: 43
26657440 CATAGCAAAC
*
26657450 CTTATCTCCCT-AAGTTGCAGTGGAGCAGGTTGAAGTGACAGGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGT-ACAGAT
* **
26657493 CTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC-GAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-TA-CAGA-T
* * * ** ** *
26657538 CTTATTTCCCTGAAGTTGTAGTGCAATAAATTGAAGCTATAAATAAATAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-------T--ACAGAT
** * * * * *
26657590 CTTATCTCTTTGAAGTTGCAGTAGAGCA-GAT-CA-TAGCAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTA-CAGAT
* * *
26657631 CTTATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTGACAGGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGT-ACAGAT
* * ** *
26657675 CTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-TA-CAGAT
* * * * *
26657720 CTTATTTCCATGAAGTTGCAATGGAACAGATTGAAGCTATAAATAAACAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-------T--ACAGAT
* * * * * * * *
26657772 CTTATATCTCTGAAGTTGCAGTAGAGTA-GAT-CA-TAGCAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTA-CAGAT
* * *
26657813 CTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGTGACAGGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGT-ACAGAT
* **
26657857 CTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC-GAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-TA-CAGA-T
* * * ** ** *
26657902 CTTATTTCCCTGAAGTTGTAGTGCAATAAATTGAAGCTATAAATAAATAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-------T--ACAGAT
** * * * * *
26657954 CTTATCTCTTTGAAGTTGCAGTAGAGCA-GAT-CA-TAGCAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTA-CAGAT
* * *
26657995 CTTATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTGACAGGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGT-ACAGAT
* *** *
26658039 CTTATCTCCCTAAAGTTGCAGTGGAGCAAACTGAAGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-TA-CAGAT
* * *
26658084 CTTATTTCCCTAAAGTTGCATTGGA
1 CTTATCTCCCTGAAGTTGCAGTGGA
26658109 ACAAATTGAA
Statistics
Matches: 443, Mismatches: 121, Indels: 102
0.67 0.18 0.15
Matches are distributed among these distances:
40 3 0.01
41 75 0.17
42 9 0.02
43 13 0.03
44 132 0.30
45 125 0.28
50 3 0.01
51 9 0.02
52 67 0.15
53 7 0.02
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (43 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTACAGAT
Found at i:26657665 original size:93 final size:93
Alignment explanation
Indices: 26657487--26658166 Score: 472
Period size: 93 Copynumber: 7.4 Consensus size: 93
26657477 GGTTGAAGTG
* * * * ** *
26657487 ACAGGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAGTCTTATTTCCCTGAA
1 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T---CATAGCAAACCTTATCTCCCTGAA
* *
26657552 GTTGTAGTGCAATAAATTGAAGCTATAAATAA
62 GTTGTAGTGGAATAGATTGAAGCTATAAATAA
* *
26657584 ATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTG
1 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTG
* * *
26657649 TAGTGGAGTAGGTTGAAG-------T-G
66 TAGTGGAATAGATTGAAGCTATAAATAA
* * * * ** * * *
26657669 ACAGGTCTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATAGCAAATCTTATTTCCATGAA
1 ACAGATCTTATCTCTCTGAAGTTGCAGT--AG-AG-CAGATCATAGCAAACCTTATCTCCCTGAA
* * *
26657734 GTTGCAATGGAACAGATTGAAGCTATAAATAA
62 GTTGTAGTGGAATAGATTGAAGCTATAAATAA
* * *
26657766 ACAGATCTTATATCTCTGAAGTTGCAGTAGAGTAGATCATAGCAAACCTTATCTCCCTAAAGTTG
1 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTG
** * *
26657831 TAGTGGAGCAGGTTGAAG-------T-G
66 TAGTGGAATAGATTGAAGCTATAAATAA
* * * * ** *
26657851 ACAGGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAGTCTTATTTCCCTGAA
1 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T---CATAGCAAACCTTATCTCCCTGAA
* *
26657916 GTTGTAGTGCAATAAATTGAAGCTATAAATAA
62 GTTGTAGTGGAATAGATTGAAGCTATAAATAA
* *
26657948 ATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTG
1 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTG
* * *
26658013 TAGTGGAGTAGGTTGAAG-------T-G
66 TAGTGGAATAGATTGAAGCTATAAATAA
* * * * ** * * *
26658033 ACAGGTCTTATCTCCCTAAAGTTGCAGTGGAGCAAACTGAAGATAGCAAATCTTATTTCCCTAAA
1 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGC--A--GATCATAGCAAACCTTATCTCCCTGAA
* * * * *
26658098 GTTGCATTGGAACAAATTGAAGTTATAAATAA
62 GTTGTAGTGGAATAGATTGAAGCTATAAATAA
* **
26658130 ATAGATCTTATCTCTCTGAAGTTATAGTAGAGCAGAT
1 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
26658167 TTAAGCCACT
Statistics
Matches: 443, Mismatches: 104, Indels: 76
0.71 0.17 0.12
Matches are distributed among these distances:
85 82 0.19
86 4 0.01
87 3 0.01
88 2 0.00
89 113 0.26
93 115 0.26
94 2 0.00
95 3 0.01
96 5 0.01
97 114 0.26
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.30
Consensus pattern (93 bp):
ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTG
TAGTGGAATAGATTGAAGCTATAAATAA
Found at i:26657728 original size:182 final size:182
Alignment explanation
Indices: 26657308--26658166 Score: 1335
Period size: 182 Copynumber: 4.7 Consensus size: 182
26657298 TCTGTGAAGT
* * *
26657308 CAGGTCTTATCTCCCTGAAGTTGCAATGGAGCA-ACTGAAGATAACGAATCTTATTTCCTTGAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAG
* * * * *
26657372 ATGCAGTGGAACAGATTGAAGCTTTAAATAAACAGATCTTATCTCTTTGAAGTTCCAGTAGAGCA
66 TTGCAGTGGAACAAATTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
*
26657437 GATCATAGCAAACCTTATCTCCCT-AAGTTGCAGTGGAGCAGGTTGAAGTGA
131 GATCATAGCAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTGA
* *
26657488 CAGGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAGTCTTATTTCCCTGAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAG
* * *
26657553 TTGTAGTGCAATAAATTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
66 TTGCAGTGGAACAAATTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
*
26657618 GATCATAGCAAACCTTATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTGA
131 GATCATAGCAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTGA
* * * *
26657670 CAGGTCTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATAGCAAATCTTATTTCCATGAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAG
* * * * * *
26657735 TTGCAATGGAACAGATTGAAGCTATAAATAAACAGATCTTATATCTCTGAAGTTGCAGTAGAGTA
66 TTGCAGTGGAACAAATTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
*
26657800 GATCATAGCAAACCTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGTGA
131 GATCATAGCAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTGA
* *
26657852 CAGGTCTTATCTCTCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAGTCTTATTTCCCTGAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAG
* * *
26657917 TTGTAGTGCAATAAATTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
66 TTGCAGTGGAACAAATTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
*
26657982 GATCATAGCAAACCTTATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTGA
131 GATCATAGCAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTGA
* * * *
26658034 CAGGTCTTATCTCCCTAAAGTTGCAGTGGAGCAAACTGAAGATAGCAAATCTTATTTCCCTAAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAG
* * * **
26658099 TTGCATTGGAACAAATTGAAGTTATAAATAAATAGATCTTATCTCTCTGAAGTTATAGTAGAGCA
66 TTGCAGTGGAACAAATTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
26658164 GAT
131 GAT
26658167 TTAAGCCACT
Statistics
Matches: 614, Mismatches: 63, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
180 31 0.05
181 109 0.18
182 474 0.77
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (182 bp):
CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAG
TTGCAGTGGAACAAATTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCA
GATCATAGCAAACCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTGA
Found at i:26658009 original size:364 final size:362
Alignment explanation
Indices: 26657308--26658166 Score: 1484
Period size: 364 Copynumber: 2.4 Consensus size: 362
26657298 TCTGTGAAGT
* * * * *
26657308 CAGGTCTTATCTCCCTGAAGTTGCAATGGAGCAACTGAAGATAACGAATCTTATTTCCTTGAAGA
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAACTGAAGATAGCAAATCTTATTTCCATGAAGT
* * * *
26657373 TGCAGTGGAACAGATTGAAGCTTTAAATAAACAGATCTTATCTCTTTGAAGTTCCAGTAGAGCAG
66 TGCAATGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAG
26657438 ATCATAGCAAACCTTATCTCCCTAAGTTGCAGTGGAGCAGGTTGAAGTGACAGGTCTTATCTCTC
131 ATCATAGCAAACCTTATCTCCCTAAGTTGCAGTGGAGCAGGTTGAAGTGACAGGTCTTATCTCTC
26657503 TGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAGTCTTATTTCCCTGAAGTTGTAGTGCAATAAA
196 TGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAGTCTTATTTCCCTGAAGTTGTAGTGCAATAAA
26657568 TTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATCATAGCAAACCT
261 TTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATCATAGCAAACCT
26657633 TATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTGA
326 TATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTGA
* *
26657670 CAGGTCTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAGATAGCAAATCTTATTTCCATGAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCA-ACTGAAGATAGCAAATCTTATTTCCATGAAG
* * *
26657735 TTGCAATGGAACAGATTGAAGCTATAAATAAACAGATCTTATATCTCTGAAGTTGCAGTAGAGTA
65 TTGCAATGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTGAAGTTACAGTAGAGCA
*
26657800 GATCATAGCAAACCTTATCTCCCTAAAGTTGTAGTGGAGCAGGTTGAAGTGACAGGTCTTATCTC
130 GATCATAGCAAACCTTATCTCCCT-AAGTTGCAGTGGAGCAGGTTGAAGTGACAGGTCTTATCTC
26657865 TCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAGTCTTATTTCCCTGAAGTTGTAGTGCAATA
194 TCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAGTCTTATTTCCCTGAAGTTGTAGTGCAATA
26657930 AATTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATCATAGCAAAC
259 AATTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATCATAGCAAAC
26657995 CTTATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTGA
324 CTTATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTGA
* * *
26658034 CAGGTCTTATCTCCCTAAAGTTGCAGTGGAGCAAACTGAAGATAGCAAATCTTATTTCCCTAAAG
1 CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGC-AACTGAAGATAGCAAATCTTATTTCCATGAAG
* * * * *
26658099 TTGCATTGGAACAAATTGAAGTTATAAATAAATAGATCTTATCTCTCTGAAGTTATAGTAGAGCA
65 TTGCAATGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTGAAGTTACAGTAGAGCA
26658164 GAT
130 GAT
26658167 TTAAGCCACT
Statistics
Matches: 467, Mismatches: 27, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
362 30 0.06
363 110 0.24
364 326 0.70
365 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (362 bp):
CAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAACTGAAGATAGCAAATCTTATTTCCATGAAGT
TGCAATGGAACAGATTGAAGCTATAAATAAACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAG
ATCATAGCAAACCTTATCTCCCTAAGTTGCAGTGGAGCAGGTTGAAGTGACAGGTCTTATCTCTC
TGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAGTCTTATTTCCCTGAAGTTGTAGTGCAATAAA
TTGAAGCTATAAATAAATAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATCATAGCAAACCT
TATCTCCCTGAAGTTGTAGTGGAGTAGGTTGAAGTGA
Found at i:26658656 original size:352 final size:351
Alignment explanation
Indices: 26658159--26658926 Score: 1119
Period size: 352 Copynumber: 2.2 Consensus size: 351
26658149 AGTTATAGTA
* * **
26658159 GAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCG-GGTTGGTGATTGTAG
1 GAGCAGATTTTAGCCACCAGCCTTA-CTCTCTGAGGTAGCAAGAGAG-GAGGTTGGCAATTGTAG
* * * * *
26658223 TCTTATCTTCCTGAGGCAGTAAGGAAGTAGATAAAGATTGAAGACTTATCTCCCTAAGCAGTAGT
64 CCTTATCTTCCTAAGGCAGCAAGGAAGCAGATAAAGATTGAAAACTTATCTCCCTAAGCAGTAGT
* * * * ** *
26658288 GGAGCAGATTGAAGACGGCGAATCTTATCTCCATGTATCAGTAATGGAGAAGATTTAAGCCACCA
129 GGAGAAGATCGAAGACGGAGAATCTTATCTCCATGAATCAACAATGAAGAAGATTTAAGCCACCA
* * *
26658353 GCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTATTCTTATCTTCCTAAAATAGC
194 ACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGTCTTATCTTCCTAAAATAGA
* *
26658418 AAGGAAGCAAACTGAAGATTGAAGATCTTATCTCTATAAGCAGTTGTGGAGCAGATCGAAGATGG
259 AAGGAAGCAAACTGAAGATTGAAGATCTTATCTCCATAAGAAGTTGTGGAGCAGATCGAAGATGG
*
26658483 CGAGTCTTATATTCCCAAGGTAGCAGGG
324 AGAGTCTTATATTCCCAAGGTAGCAGGG
* * *
26658511 GAGCAAATTTTAGCCACCAGCCTTA-TCTCTAAGGTAGCAAAAGAGGAGGTTGGCAATTGTAGCC
1 GAGCAGATTTTAGCCACCAGCCTTACTCTCTGAGGTAGCAAGAGAGGAGGTTGGCAATTGTAGCC
* *
26658575 TTATCTTCCTAAGGTAGCAAGGAAGCAGAATGAAGATTGAAAATCTTATCTCCCTAAGCAGTAGT
66 TTATCTTCCTAAGGCAGCAAGGAAGCAG-ATAAAGATTGAAAA-CTTATCTCCCTAAGCAGTAGT
*
26658640 GGAGAAGATCGAAGACGGAGAATCTTATCTCCATGAATCAACAATGAAGTAGATTTAAGCCACCA
129 GGAGAAGATCGAAGACGGAGAATCTTATCTCCATGAATCAACAATGAAGAAGATTTAAGCCACCA
* **
26658705 ACCTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGTCTTATCTTCCTAAGGTAGA
194 ACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGTCTTATCTTCCTAAAATAGA
* * * * *
26658770 AAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTACGAAGTTGTGGAGTAGATTGAAGATGG
259 AAGGAAGCAAACTGAAGATTGAAGATCTTATCTCCATAAGAAGTTGTGGAGCAGATCGAAGATGG
* *
26658835 AGAGTCTTATCTTCCCGAGGTAGCAGGG
324 AGAGTCTTATATTCCCAAGGTAGCAGGG
*
26658863 GAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGCAATT-TAGC
1 GAGCAGATTTTAGCCACCAGCCTTA-CTCTCTGAGGTAGCAAGAGAGGAGGTTGGCAATTGTAGC
26658927 AAGGAAGCAG
Statistics
Matches: 369, Mismatches: 42, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
349 1 0.00
350 56 0.15
351 12 0.03
352 266 0.72
353 4 0.01
354 30 0.08
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (351 bp):
GAGCAGATTTTAGCCACCAGCCTTACTCTCTGAGGTAGCAAGAGAGGAGGTTGGCAATTGTAGCC
TTATCTTCCTAAGGCAGCAAGGAAGCAGATAAAGATTGAAAACTTATCTCCCTAAGCAGTAGTGG
AGAAGATCGAAGACGGAGAATCTTATCTCCATGAATCAACAATGAAGAAGATTTAAGCCACCAAC
CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGTCTTATCTTCCTAAAATAGAAA
GGAAGCAAACTGAAGATTGAAGATCTTATCTCCATAAGAAGTTGTGGAGCAGATCGAAGATGGAG
AGTCTTATATTCCCAAGGTAGCAGGG
Found at i:26658788 original size:177 final size:176
Alignment explanation
Indices: 26658159--26658917 Score: 918
Period size: 177 Copynumber: 4.3 Consensus size: 176
26658149 AGTTATAGTA
* *
26658159 GAGCAGATTTAAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGAGAGCGGGTTGGTGATTGTAGT
1 GAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGT
* * * * *
26658224 CTTATCTTCCTGAGGCAGTAAGGAAGTAGA-TAAAGATTGAAGA-CTTATCTCCCTAAGCAGTAG
66 CTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAG
* * * * *
26658287 TGGAGCAGATTGAAGACGGCGAATCTTATCTCCATGTATCAGTAATG
131 TGGAGCAGATCGAAGACGGAGAATCTTATCTCCATGAAT-AGCAAGG
* *
26658334 GAGAAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTATT
1 GAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGT
** * ** *
26658399 CTTATCTTCCTAAAATAGCAAGGAAGCAAACTGAAGATTGAAGATCTTATCTCTATAAGCAGTTG
66 CTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAG
* * * * * * *
26658464 TGGAGCAGATCGAAGATGGCGAGTCTTATATTCCCAAG-GTAGCAGGG
131 TGGAGCAGATCGAAGACGGAGAATCTTAT-CT-CCATGAATAGCAAGG
* * * * * ** *
26658511 GAGCAAATTTTAGCCACCAGCCTTA--TCTCTAAGGTAGCAAAAGAGGAGGTTGGCAATTGTAGC
1 GAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGT
* *
26658574 CTTATCTTCCTAAGGTAGCAAGGAAGCAGAATGAAGATTGAAAATCTTATCTCCCTAAGCAGTAG
66 CTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAG
* * *
26658639 TGGAGAAGATCGAAGACGGAGAATCTTATCTCCATGAATCAACAATG
131 TGGAGCAGATCGAAGACGGAGAATCTTATCTCCATGAAT-AGCAAGG
* * * *
26658686 AAGTAGATTTAAGCCACCAACCTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGT
1 GAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGT
* * * *
26658751 CTTATCTTCCTAAGGTAGAAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTACGAAGTTG
66 CTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAG
* * * * * * *
26658816 TGGAGTAGATTGAAGATGGAGAGTCTTATCTTCC-CGAGGTAGCAGGG
131 TGGAGCAGATCGAAGACGGAGAATCTTATC-TCCATGA-ATAGCAAGG
*
26658863 GAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGG
1 GAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGG
26658918 CAATTTAGCA
Statistics
Matches: 490, Mismatches: 84, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
173 4 0.01
174 2 0.00
175 221 0.45
176 12 0.02
177 241 0.49
178 6 0.01
179 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (176 bp):
GAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGGTGATTGTAGT
CTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACGGAGAATCTTATCTCCATGAATAGCAAGG
Found at i:26660552 original size:17 final size:17
Alignment explanation
Indices: 26660516--26660548 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26660506 TTGAGTCTTT
*
26660516 TTATTTTATATAATTCA
1 TTATTTTATAAAATTCA
26660533 TTATTTT-TAAAATTCA
1 TTATTTTATAAAATTCA
26660549 ATTAACATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
TTATTTTATAAAATTCA
Found at i:26660910 original size:24 final size:24
Alignment explanation
Indices: 26660883--26660929 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
26660873 AGCCTTACAT
26660883 ATTTAATTATTTTTTATTGTATGA
1 ATTTAATTATTTTTTATTGTATGA
26660907 ATTTAATTATTTTTTATTGTATG
1 ATTTAATTATTTTTTATTGTATG
26660930 TACATTGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.64
Consensus pattern (24 bp):
ATTTAATTATTTTTTATTGTATGA
Found at i:26670411 original size:27 final size:27
Alignment explanation
Indices: 26670235--26670416 Score: 177
Period size: 27 Copynumber: 6.8 Consensus size: 27
26670225 CATTTGTCTC
* *
26670235 ATAGGGGTATTACAGTCATTTTACCCT
1 ATAGGGGTATTTCGGTCATTTTACCCT
* * * *
26670262 ACAGGGGTATTTTGGTTATCTTACCCT
1 ATAGGGGTATTTCGGTCATTTTACCCT
* *
26670289 AAAGGGGTATTTCGATCATTTTACCCT
1 ATAGGGGTATTTCGGTCATTTTACCCT
* ** * *
26670316 ACATAGGTATTTCGATCATTTTAACCT
1 ATAGGGGTATTTCGGTCATTTTACCCT
* * *
26670343 ATGGGGGT-TTTCAGTTATTTTACCCT
1 ATAGGGGTATTTCGGTCATTTTACCCT
* *
26670369 ATAGGGGTATTCCGGTCATTTTACCTT
1 ATAGGGGTATTTCGGTCATTTTACCCT
* *
26670396 ATGGGGGTATTTCGGTAATTT
1 ATAGGGGTATTTCGGTCATTT
26670417 ACAAACTGGG
Statistics
Matches: 123, Mismatches: 31, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
26 21 0.17
27 102 0.83
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.41
Consensus pattern (27 bp):
ATAGGGGTATTTCGGTCATTTTACCCT
Found at i:26670418 original size:53 final size:52
Alignment explanation
Indices: 26670252--26670418 Score: 165
Period size: 53 Copynumber: 3.1 Consensus size: 52
26670242 TATTACAGTC
* * * **
26670252 ATTTTACCCTACAGGGGTATTTTGGTTATCTTACCCTAAAGGGGTATTTCGAT
1 ATTTTACCCTACAGGGGTATTTCGGTCATTTTA-CCTATGGGGGTATTTCGAT
** * *
26670305 CATTTTACCCTACATAGGTATTTCGATCATTTTAACCTATGGGGGT-TTTCAGTT
1 -ATTTTACCCTACAGGGGTATTTCGGTCATTTT-ACCTATGGGGGTATTTC-GAT
* * *
26670359 ATTTTACCCTATAGGGGTATTCCGGTCATTTTACCTTATGGGGGTATTTCGGT
1 ATTTTACCCTACAGGGGTATTTCGGTCATTTTACC-TATGGGGGTATTTCGAT
*
26670412 AATTTAC
1 ATTTTAC
26670419 AAACTGGGGT
Statistics
Matches: 93, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
52 3 0.03
53 48 0.52
54 41 0.44
55 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (52 bp):
ATTTTACCCTACAGGGGTATTTCGGTCATTTTACCTATGGGGGTATTTCGAT
Found at i:26673313 original size:39 final size:39
Alignment explanation
Indices: 26673259--26673569 Score: 469
Period size: 39 Copynumber: 8.0 Consensus size: 39
26673249 AAGACACTGA
26673259 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
26673298 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTACTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
26673337 AAATATATCCAGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * * *
26673376 AAATATATCTGGGCCAAAGTCCCACAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
***
26673415 AAATGTATCCAAACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * * *
26673454 AAATATATCTGGGCCAAAGTCCCACAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
26673493 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
26673532 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
26673570 ATAAATAATT
Statistics
Matches: 244, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 244 1.00
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.23
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:26678632 original size:79 final size:80
Alignment explanation
Indices: 26678533--26678715 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
26678523 TACTCGTTCA
* * *
26678533 AATGCCTTTGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
26678596 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
26678613 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
26678677 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
26678692 AAGGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
26678716 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 27 0.30
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:26678715 original size:40 final size:40
Alignment explanation
Indices: 26678512--26678715 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
26678502 CGGAATTTAA
** * *
26678512 CCGGATATAGCT-ACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26678552 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26678592 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
26678631 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
26678671 CCGGATATGGTCACTTAGCAC-AAGGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26678711 CCGGA
1 CCGGA
26678716 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 95 0.68
41 9 0.06
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26680869 original size:13 final size:13
Alignment explanation
Indices: 26680851--26680875 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26680841 TAATGGTATA
26680851 TTGAATCCATGAC
1 TTGAATCCATGAC
26680864 TTGAATCCATGA
1 TTGAATCCATGA
26680876 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:26682637 original size:47 final size:47
Alignment explanation
Indices: 26682559--26682969 Score: 597
Period size: 47 Copynumber: 8.6 Consensus size: 47
26682549 TATTTGAATA
* *
26682559 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
26682608 AATGTGAAAATGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
26682655 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
26682702 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
26682751 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
26682800 AATGTGAAAGTGTATATACGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
26682847 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
26682894 AATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
26682943 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
26682970 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 24, Indels: 10
0.91 0.07 0.03
Matches are distributed among these distances:
47 191 0.57
49 143 0.43
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:26682734 original size:96 final size:94
Alignment explanation
Indices: 26682559--26682969 Score: 615
Period size: 96 Copynumber: 4.3 Consensus size: 94
26682549 TATTTGAATA
* * *
26682559 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
26682624 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAGGGCCTAATGGCCGATGTGATG
*
26682655 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
26682720 TATGTGATAGGGCCTAATGGCCGATGTGATG
64 TATGTGATAGGGCCTAATGGCCGATGTGATG
26682751 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
26682816 TACGTGATAGGGCCTAATGGCCGATGTGATG
64 TATGTGATAGGGCCTAATGGCCGATGTGATG
*
26682847 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
* * * * *
26682912 TATGTGACAGGGCCGAGTGGCCAACGTGATG
64 TATGTGATAGGGCCTAATGGCCGATGTGATG
* *
26682943 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
26682970 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 17, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
94 89 0.30
96 157 0.54
98 46 0.16
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAGGGCCTAATGGCCGATGTGATG
Found at i:26682888 original size:192 final size:192
Alignment explanation
Indices: 26682559--26682969 Score: 682
Period size: 192 Copynumber: 2.2 Consensus size: 192
26682549 TATTTGAATA
26682559 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATA
*
26682624 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TACGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * * *
26682689 AGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
131 AGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAGGGCCGAATGGCCAACGTGATG
* * *
26682751 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATA
* *
26682816 TACGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TACGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * *
26682881 GGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
131 AGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAGGGCCGAATGGCCAACGTGATG
*
26682943 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
26682970 TCCCGAAGGG
Statistics
Matches: 205, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
190 10 0.05
191 1 0.00
192 194 0.95
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (192 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATA
TACGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
AGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAGGGCCGAATGGCCAACGTGATG
Found at i:26683138 original size:37 final size:37
Alignment explanation
Indices: 26683088--26683166 Score: 158
Period size: 37 Copynumber: 2.1 Consensus size: 37
26683078 CCAAGCTCTA
26683088 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
26683125 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
26683162 AAGAC
1 AAGAC
26683167 TTCGTAATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:26687221 original size:39 final size:39
Alignment explanation
Indices: 26687167--26687438 Score: 427
Period size: 39 Copynumber: 7.0 Consensus size: 39
26687157 AAGACACTGA
26687167 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
26687206 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTACTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
26687245 AAATATATCCGGGCTAAAGTCCTGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
26687284 AAATATCTCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
26687323 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCATGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
26687362 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * * *
26687401 AAATGTATCTGGGTTAAAGTCTCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
26687439 ATAATATAAT
Statistics
Matches: 213, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 213 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:26694348 original size:32 final size:32
Alignment explanation
Indices: 26694311--26694397 Score: 102
Period size: 32 Copynumber: 2.7 Consensus size: 32
26694301 CTTCAGTAGT
* *
26694311 GGTATTATAAGTGGCACAAAGCCATCAGTAAC
1 GGTATTATAATTGGCACAAAGCCATCAGCAAC
* ** * *
26694343 TGTATTATGTTTGGCACATAGCCATCAGCGAC
1 GGTATTATAATTGGCACAAAGCCATCAGCAAC
*
26694375 GGTAATATAATTGGCACAAAGCC
1 GGTATTATAATTGGCACAAAGCC
26694398 TTGGGTAAAT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (32 bp):
GGTATTATAATTGGCACAAAGCCATCAGCAAC
Found at i:26694964 original size:27 final size:27
Alignment explanation
Indices: 26694893--26694956 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
26694883 TTACCCTATA
*
26694893 GGGGTATTTCAATAATTTTATAAACTG
1 GGGGTATTTCAATAATTTTACAAACTG
* *
26694920 AGGGTATTTCAATAATTTTACAAGCTG
1 GGGGTATTTCAATAATTTTACAAACTG
26694947 GGGGTATTTC
1 GGGGTATTTC
26694957 GGTAATTTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGGTATTTCAATAATTTTACAAACTG
Found at i:26696189 original size:27 final size:27
Alignment explanation
Indices: 26696151--26696239 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
26696141 CAAAAAAGTC
* * *
26696151 ATTTTACCCTACAGGGGTATTTCGATA
1 ATTTTACACTACAGGGGTATTTTGGTA
* *
26696178 ATTTTACACTACAAGGGTGTTTTGGTA
1 ATTTTACACTACAGGGGTATTTTGGTA
* *
26696205 ATTTTACA-AACTGGGGGTATTTTGGTA
1 ATTTTACACTAC-AGGGGTATTTTGGTA
26696232 ATTTTACA
1 ATTTTACA
26696240 AACTGAGGTA
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.04
27 50 0.96
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAGGGGTATTTTGGTA
Found at i:26705238 original size:30 final size:30
Alignment explanation
Indices: 26705204--26705265 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
26705194 TTTTAAATGA
26705204 TGGTTGATTAAGTATGAAATGCTAAGTAAT
1 TGGTTGATTAAGTATGAAATGCTAAGTAAT
26705234 TGGTTGATTAAGTATGAAATGCTAAGTAAT
1 TGGTTGATTAAGTATGAAATGCTAAGTAAT
26705264 TG
1 TG
26705266 TATTTGAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.37
Consensus pattern (30 bp):
TGGTTGATTAAGTATGAAATGCTAAGTAAT
Found at i:26706422 original size:15 final size:15
Alignment explanation
Indices: 26706402--26706449 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
26706392 TCAAAGGTGG
26706402 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
26706417 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
26706432 -TTTATGGATATAAA
1 GTTTATGGATATGAA
26706446 GTTT
1 GTTT
26706450 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:26708095 original size:40 final size:40
Alignment explanation
Indices: 26708051--26708274 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
26708041 GCTCCTCGTT
* * *
26708051 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
26708091 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
26708131 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
26708171 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * *
26708210 CAAATGCCTT-TGGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
26708251 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
26708275 CAGCATTCAA
Statistics
Matches: 164, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 47 0.29
40 106 0.65
41 9 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:26708235 original size:79 final size:81
Alignment explanation
Indices: 26708051--26708274 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 81
26708041 GCTCCTCGTT
* * * * *
26708051 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
26708115 GATTTAGTAACTCGCA
66 GAATTAGTAACTCGCA
26708131 CAAATGCCTTCGGGACTTAACCCGGAT-TTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
26708194 GAATTAGTATCTCGCA
66 GAATTAGTAACTCGCA
* ** * *
26708210 CAAATGCCTT-TGGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAACCCGGATATTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
26708271 CGGA
64 CGGA
26708275 CAGCATTCAA
Statistics
Matches: 127, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
78 12 0.09
79 59 0.46
80 56 0.44
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAACCCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
GAATTAGTAACTCGCA
Found at i:26716093 original size:39 final size:41
Alignment explanation
Indices: 26715976--26716159 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 41
26715966 GCTCCTCGTT
* *
26715976 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
26716016 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
26716056 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * * *
26716095 CAAATGCCTT-TGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
26716136 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26716160 CAGCATTCAA
Statistics
Matches: 126, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
38 3 0.02
39 46 0.37
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:26716120 original size:79 final size:82
Alignment explanation
Indices: 26715976--26716159 Score: 215
Period size: 79 Copynumber: 2.3 Consensus size: 82
26715966 GCTCCTCGTT
* *
26715976 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
*
26716040 GAT-TTAGTAAC-TCGCA
66 GATATT-GTAACTTAGCA
* **
26716056 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTT-TGGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
*
26716117 CGGATATTGTCACTTAGCA
64 CGGATATTGTAACTTAGCA
26716136 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26716160 CAGCATTCAA
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 14 0.15
79 55 0.60
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
GATATTGTAACTTAGCA
Found at i:26731321 original size:23 final size:23
Alignment explanation
Indices: 26731281--26731339 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
26731271 TGTAAGTCCT
* * *
26731281 CTAAAACTGTTACTTGTTTCAAG
1 CTAAAACTATTATTTGTTTCAAA
26731304 CTGAAAA-TATTATTTGTTTCAAA
1 CT-AAAACTATTATTTGTTTCAAA
26731327 CTAAAACTATTAT
1 CTAAAACTATTAT
26731340 AGATAGTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
22 4 0.13
23 23 0.74
24 4 0.13
ACGTcount: A:0.37, C:0.14, G:0.08, T:0.41
Consensus pattern (23 bp):
CTAAAACTATTATTTGTTTCAAA
Found at i:26736249 original size:37 final size:37
Alignment explanation
Indices: 26736199--26736277 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26736189 TTATTACGAA
* * *
26736199 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26736236 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26736273 GTCTT
1 GTCTT
26736278 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26736474 original size:47 final size:47
Alignment explanation
Indices: 26736396--26736665 Score: 398
Period size: 47 Copynumber: 5.7 Consensus size: 47
26736386 CCCTTCGGGA
* * * * *
26736396 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
26736443 CCTGTCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
26736490 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
26736537 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
**
26736584 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
26736631 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
26736666 AGAATCCTAA
Statistics
Matches: 204, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 203 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:26736546 original size:22 final size:22
Alignment explanation
Indices: 26736518--26736593 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
26736508 TTTCACATTC
26736518 ATCACATTGGCCATTAGGCCTT
1 ATCACATTGGCCATTAGGCCTT
*** *** *
26736540 ATCACATATATACACTTTCACATT
1 ATCACAT-TGGCCA-TTAGGCCTT
26736564 CATCACATTGGCCATTAGGCCTT
1 -ATCACATTGGCCATTAGGCCTT
26736587 ATCACAT
1 ATCACAT
26736594 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTAGGCCTT
Found at i:26748711 original size:33 final size:30
Alignment explanation
Indices: 26748646--26748704 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
26748636 TTAAAGGTAA
* *
26748646 AAGTATGTGTTTTTTTTATCTTGTTAATAT
1 AAGTATATGCTTTTTTTATCTTGTTAATAT
26748676 AAGTATATGCTTTTTTTATCTTGTTAATA
1 AAGTATATGCTTTTTTTATCTTGTTAATA
26748705 AAATAAGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.05, G:0.12, T:0.58
Consensus pattern (30 bp):
AAGTATATGCTTTTTTTATCTTGTTAATAT
Found at i:26751944 original size:92 final size:92
Alignment explanation
Indices: 26751848--26752228 Score: 690
Period size: 92 Copynumber: 4.1 Consensus size: 92
26751838 TCCTAGTAAA
* **
26751848 GGAAAAAAAGTACACATATCTATAATACACATAATATGCTGCCTCATTAAAAACCTTACCAAGAA
1 GGAAAAAGAGTACACATATCTATAATACGTATAATATGCTGCCTCATTAAAAACCTTACCAAGAA
26751913 AACTTAATGGACAAAACTTCGGTTAAG
66 AACTTAATGGACAAAACTTCGGTTAAG
26751940 GGAAAAAGAGTACACATATCTATAATACGTATAATATGCTGCCTCATTAAAAACCTTACCAAGAA
1 GGAAAAAGAGTACACATATCTATAATACGTATAATATGCTGCCTCATTAAAAACCTTACCAAGAA
26752005 AACTTAATGGACAAAACTTCGGTTAAG
66 AACTTAATGGACAAAACTTCGGTTAAG
26752032 GGAAAAAGAGTACACATATCTATAATACGTATAATATGCTGCCTCATTAAAAACCTTACCAAGAA
1 GGAAAAAGAGTACACATATCTATAATACGTATAATATGCTGCCTCATTAAAAACCTTACCAAGAA
26752097 AACTTAATGGACAAAACTTCGGTTAAG
66 AACTTAATGGACAAAACTTCGGTTAAG
26752124 GGAAAAAGAGTACACATATCTATAATACGTATAATATGCTGCCTCATTAAAAACCTTACCAAGAA
1 GGAAAAAGAGTACACATATCTATAATACGTATAATATGCTGCCTCATTAAAAACCTTACCAAGAA
** * *
26752189 AACCCAATGGGACAAAACCTCGGTTAAA
66 AACTTAAT-GGACAAAACTTCGGTTAAG
26752217 GGAAAAAGAGTA
1 GGAAAAAGAGTA
26752229 TAGTGCACAT
Statistics
Matches: 281, Mismatches: 7, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
92 252 0.90
93 29 0.10
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (92 bp):
GGAAAAAGAGTACACATATCTATAATACGTATAATATGCTGCCTCATTAAAAACCTTACCAAGAA
AACTTAATGGACAAAACTTCGGTTAAG
Found at i:26760668 original size:15 final size:16
Alignment explanation
Indices: 26760641--26760670 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26760631 TAATATTAAA
26760641 TTATTTTTAAATTTTT
1 TTATTTTTAAATTTTT
26760657 TTATTTTT-AATTTT
1 TTATTTTTAAATTTT
26760671 AAGTAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TTATTTTTAAATTTTT
Found at i:26760926 original size:26 final size:23
Alignment explanation
Indices: 26760869--26760935 Score: 70
Period size: 19 Copynumber: 3.0 Consensus size: 23
26760859 TCTCATTTTT
*
26760869 TATTTGTTTTT-TGTTTT-AA--
1 TATTTGTTTTTATATTTTAAATG
26760888 TATTTGTTTTTATATTTTTAAATG
1 TATTTGTTTTTATA-TTTTAAATG
26760912 TATTTGATTTATTATATTTTAAAT
1 TATTTG-TTT-TTATATTTTAAAT
26760936 TTTTTTATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
19 11 0.28
20 1 0.03
21 4 0.10
22 2 0.05
24 6 0.15
25 11 0.28
26 5 0.12
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.67
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:26761473 original size:86 final size:87
Alignment explanation
Indices: 26761378--26761554 Score: 268
Period size: 87 Copynumber: 2.0 Consensus size: 87
26761368 AAAAGTCTTT
* * * *
26761378 AAACTTTTTCAAAATAAGCAATTAAGCCCCT-T-TTTTTTGCTCTCATTTGGGTACTTAAACTTT
1 AAACCTTTTCAAAAAAAGCAATTAAGCCCCTATCTTTTTTGCACTCAATTGGG-ACTTAAACTTT
*
26761441 CAAAATGCATCAAAAAGATCCTC
65 CAAAATGCATCAAAAAGACCCTC
*
26761464 AAACCTTTTCAAAAAAAGCAATTAAGCCCCTATCTTTTTTTCACTCAATTGGGACTTAAACTTTC
1 AAACCTTTTCAAAAAAAGCAATTAAGCCCCTATCTTTTTTGCACTCAATTGGGACTTAAACTTTC
*
26761529 AAAATTCATCAAAAAGACCCTC
66 AAAATGCATCAAAAAGACCCTC
26761551 AAAC
1 AAAC
26761555 TTAAAAAAAG
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
86 29 0.35
87 37 0.45
88 16 0.20
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.33
Consensus pattern (87 bp):
AAACCTTTTCAAAAAAAGCAATTAAGCCCCTATCTTTTTTGCACTCAATTGGGACTTAAACTTTC
AAAATGCATCAAAAAGACCCTC
Found at i:26761722 original size:19 final size:18
Alignment explanation
Indices: 26761689--26761770 Score: 65
Period size: 19 Copynumber: 4.3 Consensus size: 18
26761679 TTTTAAAAAA
26761689 ATAAAAAGTTGTAAAATTTT
1 ATAAAAA-TT-TAAAATTTT
**
26761709 ATAAAAATCTTAAAAAATT
1 ATAAAAAT-TTAAAATTTT
* * *
26761728 ATAAAATATATAGAATTAT
1 ATAAAA-ATTTAAAATTTT
*
26761747 AAAAAAATTATAAAATTTT
1 ATAAAAATT-TAAAATTTT
26761766 ATAAA
1 ATAAA
26761771 GTCGTAAGAA
Statistics
Matches: 47, Mismatches: 12, Indels: 7
0.71 0.18 0.11
Matches are distributed among these distances:
18 2 0.04
19 35 0.74
20 10 0.21
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (18 bp):
ATAAAAATTTAAAATTTT
Found at i:26761732 original size:29 final size:29
Alignment explanation
Indices: 26761656--26761770 Score: 110
Period size: 28 Copynumber: 4.0 Consensus size: 29
26761646 TAAAAAATTT
* *
26761656 AAATATTATAAATTTATTAAAATTTT-TAA
1 AAATATTAAAAAATTA-TAAAATTTTATAA
* * *
26761685 AAA-AATAAAAAGTTGTAAAATTTTATAA
1 AAATATTAAAAAATTATAAAATTTTATAA
* * *
26761713 AAATCTTAAAAAATTATAAAA-TATATAG
1 AAATATTAAAAAATTATAAAATTTTATAA
* *
26761741 AATTATAAAAAAATTATAAAATTTTATAA
1 AAATATTAAAAAATTATAAAATTTTATAA
26761770 A
1 A
26761771 GTCGTAAGAA
Statistics
Matches: 68, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
27 9 0.13
28 37 0.54
29 22 0.32
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.37
Consensus pattern (29 bp):
AAATATTAAAAAATTATAAAATTTTATAA
Found at i:26762994 original size:13 final size:13
Alignment explanation
Indices: 26762970--26763009 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
26762960 ATTATTTGAA
26762970 TTATTT-TATTTT
1 TTATTTATATTTT
26762982 TTATTTATATTTT
1 TTATTTATATTTT
* *
26762995 ATATATATATTTT
1 TTATTTATATTTT
26763008 TT
1 TT
26763010 GTTCTATAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 6 0.25
13 18 0.75
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (13 bp):
TTATTTATATTTT
Found at i:26775033 original size:3 final size:3
Alignment explanation
Indices: 26775025--26775060 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
26775015 TACAATATTC
26775025 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26775061 CTTTCTTCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:26776221 original size:29 final size:30
Alignment explanation
Indices: 26776180--26776242 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 30
26776170 TCAGAAAATT
*
26776180 TTTTTAAAGAATAAAATTA-AATTGT-ATA
1 TTTTTAAAGAATAAAAATATAATTGTAATA
* *
26776208 TTTTTATAATAATAAAAATATAATTTTAATA
1 TTTTTA-AAGAATAAAAATATAATTGTAATA
26776239 TTTT
1 TTTT
26776243 AATATTTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 6 0.21
29 11 0.38
30 5 0.17
31 7 0.24
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (30 bp):
TTTTTAAAGAATAAAAATATAATTGTAATA
Found at i:26776642 original size:21 final size:20
Alignment explanation
Indices: 26776607--26776661 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
26776597 TATCAGTATG
*
26776607 CAAAAA-TAATATTTCTCATAT
1 CAAAAATTAAT-TTTCT-AGAT
*
26776628 CAAAAATTGATTTTCTAGAT
1 CAAAAATTAATTTTCTAGAT
*
26776648 CAAAACTTAATTTT
1 CAAAAATTAATTTT
26776662 GAAAGCAAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 15 0.52
21 11 0.38
22 3 0.10
ACGTcount: A:0.44, C:0.13, G:0.04, T:0.40
Consensus pattern (20 bp):
CAAAAATTAATTTTCTAGAT
Found at i:26779291 original size:12 final size:12
Alignment explanation
Indices: 26779249--26779297 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
26779239 GCATTGCCTG
26779249 AATGAATAACAT
1 AATGAATAACAT
* **
26779261 AATGGATCCCACT
1 AATGAATAACA-T
26779274 -ATGAATAACAT
1 AATGAATAACAT
26779285 AATGAATAACAT
1 AATGAATAACAT
26779297 A
1 A
26779298 TTTCATGATG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
11 1 0.03
12 27 0.93
13 1 0.03
ACGTcount: A:0.51, C:0.14, G:0.10, T:0.24
Consensus pattern (12 bp):
AATGAATAACAT
Found at i:26781386 original size:30 final size:30
Alignment explanation
Indices: 26781350--26781413 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
26781340 ATTTAAACCA
26781350 CAAAATTTTAAACATATAATTAAACCAAAT
1 CAAAATTTTAAACATATAATTAAACCAAAT
26781380 CAAAATTTTAAACATATAATTAAACCAAAT
1 CAAAATTTTAAACATATAATTAAACCAAAT
26781410 CAAA
1 CAAA
26781414 GTTGTAATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (30 bp):
CAAAATTTTAAACATATAATTAAACCAAAT
Found at i:26793134 original size:77 final size:77
Alignment explanation
Indices: 26793005--26793157 Score: 288
Period size: 77 Copynumber: 2.0 Consensus size: 77
26792995 TACCTCGGAC
26793005 AACGAAAAACTGGTACGGATCGACTAGTCGACAACTTTTGACTTTCCCCGGTCCAAATCCAATTT
1 AACGAAAAACTGGTACGGATCGACTAGTCGACAACTTTTGACTTTCCCCGGTCCAAATCCAATTT
26793070 CTTTAGTTCTTG
66 CTTTAGTTCTTG
* *
26793082 AACGAAAAACTGGTACGGATCGACTAGTCGACAACTTTTGACTTTCCTCGGTCCAAATCCGATTT
1 AACGAAAAACTGGTACGGATCGACTAGTCGACAACTTTTGACTTTCCCCGGTCCAAATCCAATTT
26793147 CTTTAGTTCTT
66 CTTTAGTTCTT
26793158 AATCTAAAGA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (77 bp):
AACGAAAAACTGGTACGGATCGACTAGTCGACAACTTTTGACTTTCCCCGGTCCAAATCCAATTT
CTTTAGTTCTTG
Found at i:26799362 original size:22 final size:21
Alignment explanation
Indices: 26799326--26799368 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
26799316 CAAATCAGCA
*
26799326 GGAAAGTACAAATCTCGAACC
1 GGAAAGCACAAATCTCGAACC
*
26799347 NGGAAAGCACAGATCTCGAACC
1 -GGAAAGCACAAATCTCGAACC
26799369 ATCAAGGGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.26, G:0.21, T:0.12
Consensus pattern (21 bp):
GGAAAGCACAAATCTCGAACC
Found at i:26800345 original size:31 final size:31
Alignment explanation
Indices: 26800307--26800370 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
26800297 CTGGTCCATA
26800307 AATCTCTGACTGATATATTTCTTACGAAACT
1 AATCTCTGACTGATATATTTCTTACGAAACT
26800338 AATCTCTGACTGATATATTTCTTACGAAACT
1 AATCTCTGACTGATATATTTCTTACGAAACT
26800369 AA
1 AA
26800371 GTCTAAAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (31 bp):
AATCTCTGACTGATATATTTCTTACGAAACT
Found at i:26806744 original size:24 final size:24
Alignment explanation
Indices: 26806689--26806745 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
26806679 ATTATTCTGC
* *
26806689 AAAAAAAAATGAACAAAAAGAAGT
1 AAAAAAAATTGAACAAAAAGAAAT
*
26806713 TAAAAAAATTGAACAAAAA-AAAT
1 AAAAAAAATTGAACAAAAAGAAAT
26806736 AAAATAAAAT
1 AAAA-AAAAT
26806746 AAAATCACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.21
24 22 0.79
ACGTcount: A:0.75, C:0.04, G:0.07, T:0.14
Consensus pattern (24 bp):
AAAAAAAATTGAACAAAAAGAAAT
Found at i:26808553 original size:166 final size:166
Alignment explanation
Indices: 26808279--26808591 Score: 455
Period size: 166 Copynumber: 1.9 Consensus size: 166
26808269 TATGTTGTGG
* * * * * *
26808279 TACTTGACAGCTTGTGTGAGCAACACCGAGTAGCTATGTCGTGACTGATAGCTTGTGTGAGCAGG
1 TACTTGACAGCTTATGTGAACAACACCGAGTAGCTACGTCGTCACTGACAGCTTATGTGAGCAGG
* *
26808344 CCTGTTAATGGCTCGAGAGTGAGCATATATGTGTTATGAGATAGAGGTAGCAATGGCTATATATG
66 CCTGTTAATGGCTCGAGAGCGAGCATATATGTGTTATGAGATAGAGGTAGCAATGGCTACATATG
**
26808409 TGGTACCTTGTGTGCAATGGCTACATATGTTGCAGT
131 TGACACCTTGTGTGCAATGGCTACATATGTTGCAGT
* * * * * *
26808445 TACTTGACAGCTTATGTGAATAGCACCGTGTAGCTACGTCTTCACTGGCAGCTTATGTGAGTAGG
1 TACTTGACAGCTTATGTGAACAACACCGAGTAGCTACGTCGTCACTGACAGCTTATGTGAGCAGG
* * *
26808510 CCTGTTGATGGCTTGAGAGCGAGCATATATGTGTTATGAGATAGAGGTAGCAATGGCTACATATT
66 CCTGTTAATGGCTCGAGAGCGAGCATATATGTGTTATGAGATAGAGGTAGCAATGGCTACATATG
26808575 TGACACCTTGTGTGCAA
131 TGACACCTTGTGTGCAA
26808592 CGTTTCCCAA
Statistics
Matches: 128, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
166 128 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (166 bp):
TACTTGACAGCTTATGTGAACAACACCGAGTAGCTACGTCGTCACTGACAGCTTATGTGAGCAGG
CCTGTTAATGGCTCGAGAGCGAGCATATATGTGTTATGAGATAGAGGTAGCAATGGCTACATATG
TGACACCTTGTGTGCAATGGCTACATATGTTGCAGT
Found at i:26819953 original size:151 final size:151
Alignment explanation
Indices: 26819685--26820075 Score: 629
Period size: 151 Copynumber: 2.6 Consensus size: 151
26819675 GAAGGTCTCT
* *
26819685 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
** * * * *
26819750 CCACACTTAGCACTACACATGTGACTTAACCATATGATACACGTAGTCGCCTGCACTTAGTATTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATATGATACACGTAGTAGCCTGCACTTAGTACTA
* *
26819815 CACAAGTGGTTGAAGTTAACG
131 CACAAGTGATCGAAGTTAACG
* * * *
26819836 GGTACGCATAGTAGCTTGGACTTAGTACTACACATGCGACCTATCAATCTGGAACACGTAGCAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
*
26819901 CTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTGACTTAACCATATGATACACGTAGTAGCCTGCACTTAGTACTA
* *
26819966 CACACGTGATCGAAGTTAGCG
131 CACAAGTGATCGAAGTTAACG
26819987 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
26820052 CTGCACTTAGTACTACACACGTGA
66 CTGCACTTAGTACTACACACGTGA
26820076 TCGAATTTAA
Statistics
Matches: 219, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 219 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGACTTAACCATATGATACACGTAGTAGCCTGCACTTAGTACTA
CACAAGTGATCGAAGTTAACG
Found at i:26820003 original size:101 final size:100
Alignment explanation
Indices: 26819685--26820580 Score: 630
Period size: 101 Copynumber: 8.9 Consensus size: 100
26819675 GAAGGTCTCT
* * * *
26819685 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAGC
** * * * ** *
26819750 CCACACTTAGCACTACACATGTGA-CTTAACCATA-T
66 CTGCACTTAGTACTACACACGTGATC-GAATTA-ACG
* * * * * * * * * *
26819785 GATACACGTAGTCGCCTGCACTTAGTATTACACAAGTG-GTTGAAGTTAA-CGGGTACGCATAGT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTT-AA--CAATCTGGTACACGTAGT
* * * * ** * *
26819848 AGCTTGGACTTAGTACTACACATGCGA-CCTATCAATCT
63 AGCCTGCACTTAGTACTACACACGTGATCGAATTAA-CG
* * * * * * *
26819886 GGAACACGTAGCAGCCTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAGC
*
26819951 CTGCACTTAGTACTACACACGTGATCGAAGTTAGCG
66 CTGCACTTAGTACTACACACGTGATCGAA-TTAACG
* * * *
26819987 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAGC
*
26820052 CTGCACTTAGTACTACACACGTGATCGAATTTAATG
66 CTGCACTTAGTACTACACACGTGATCGAA-TTAACG
* ** * * *
26820088 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCTATCAATCTAGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAGC
* * ** * *
26820153 CTGCAGTTAGTACTACACACGTGA-CTTAACCATCT
66 CTGCACTTAGTACTACACACGTGATC-GAATTAACG
* * * * * ** * *
26820188 GATACACGTAATAGCCTACACTTAGCACTACACATGTGA-TCGACGTTAA-CGGGTAC-GGATAG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAAC---AATCTGGTACACG-TAG
* * * ** * *
26820250 TAGCCTGCACTAAGTACTACACATGCGA-CCTATCAATCT
62 TAGCCTGCACTTAGTACTACACACGTGATCGAATTAA-CG
* * * * * *
26820289 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAATTTAAT-GGGTACGCATAGT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTT-AA--CAATCTGGTACACGTAGT
* * * * * *
26820352 AGCCGGCACTTAGTACTACACATGCGATC-TATCAATCT
63 AGCCTGCACTTAGTACTACACACGTGATCGAATTAA-CG
* * * * * * * ** *
26820390 AGCACACGTAGTAGCCTACAGTTAGTACTACACACGTGACTTAACCATCTAATACACGTAATAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAGC
* *
26820455 CTACACTTAGTACTACACACGTGATCGATGTTAACG
66 CTGCACTTAGTACTACACACGTGATCGA-ATTAACG
* * * * *
26820491 GGTACGCATAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAGC
26820556 CTGCACTTAGTACTACACACGTGAT
66 CTGCACTTAGTACTACACACGTGAT
26820581 TCACAATGAA
Statistics
Matches: 631, Mismatches: 140, Indels: 49
0.77 0.17 0.06
Matches are distributed among these distances:
99 6 0.01
100 137 0.22
101 473 0.75
102 15 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACTTAACAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTGATCGAATTAACG
Found at i:26820150 original size:151 final size:150
Alignment explanation
Indices: 26819685--26820322 Score: 603
Period size: 151 Copynumber: 4.2 Consensus size: 150
26819675 GAAGGTCTCT
*
26819685 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * * *
26819750 CCACACTTAGCACTACACATGTGACTTAACCATAT-GATACACGTAGTCGCCTGCACTTAGTATT
66 CTACACTTAGCACTACACACGTGACTGAACCA-ATGGATACACATAGTAGCCTGCACTTAGTACT
* *
26819814 ACACAAGTGGTTGAA-GT-TAA-CG
130 ACAC-AGT-G--CAACCTATAATCG
* * * * *
26819836 GGTACGCATAGTAGCTTGGACTTAGTACTACACATGCGACCTATCAATCTGGAACACGTAGCAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * * *
26819901 CTGCACTTAGTACTACACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTACACTTAGCACTACACACGTGACTGAACCAATGGATACACATAGTAGCCTGCACTTAGTACTA
* ** * *
26819966 CACACGTG-ATCGAAGTTAGCG
131 CACA-GTGCAACCTA-TAATCG
*
26819987 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * ** * *
26820052 CTGCACTTAGTACTACACACGTGA-TCGAATTTAATGGGTACGCATAGTAGCCTGCACTTAGTAC
66 CTACACTTAGCACTACACACGTGACT-GAA-CCAATGGATACACATAGTAGCCTGCACTTAGTAC
*
26820116 TACACA-TGCAACCTATCAATCT
129 TACACAGTGCAACCTAT-AATCG
* * * * * * * * * *
26820138 AGTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGACTTAACCATCTGATACACGTAATAGC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * ** *
26820203 CTACACTTAGCACTACACATGTGA-TCG-ACGTTAACGGGTACGGATAGTAGCCTGCACTAAGTA
66 CTACACTTAGCACTACACACGTGACT-GAAC--CAATGGATACACATAGTAGCCTGCACTTAGTA
* *
26820266 CTACACA-TGCGACCTATCAATCT
128 CTACACAGTGCAACCTAT-AATCG
*
26820289 GGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 GGTACACATAGTAGCCTGCACTTAGTACTACACA
26820323 CGTGATTGAA
Statistics
Matches: 420, Mismatches: 55, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
147 1 0.00
148 1 0.00
150 10 0.02
151 375 0.89
152 33 0.08
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (150 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTACACTTAGCACTACACACGTGACTGAACCAATGGATACACATAGTAGCCTGCACTTAGTACTA
CACAGTGCAACCTATAATCG
Found at i:26820193 original size:252 final size:252
Alignment explanation
Indices: 26819787--26820581 Score: 1329
Period size: 252 Copynumber: 3.2 Consensus size: 252
26819777 AACCATATGA
* * * * * * *
26819787 TACACGTAGTCGCCTGCACTTAGTATTACACAAGTGGTTGAAGTTAACGGGTACGCATAGTAGCT
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTGAATTTAATGGGTACGCATAGTAGCC
* * * *
26819852 TGGACTTAGTACTACACATGCGACCTATCAATCTGGAACACGTAGCAGCCTGCACTTAGTACTAC
66 TGCACTTAGTACTACACATGCGACCTATCAATCTAGAACACGTAGTAGCCTGCAGTTAGTACTAC
* * *
26819917 ACACGTGACTTAACCATTTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
131 ACACGTGACTTAACCATCTGATACACGTAATAGCCTACACTTAGTACTACACACGTGATCGAAGT
* *
26819982 TAGCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGG
196 TAACGGGTACGCATAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGG
*
26820039 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAATTTAATGGGTACGCATAGTAGCC
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTGAATTTAATGGGTACGCATAGTAGCC
* *
26820104 TGCACTTAGTACTACACATGCAACCTATCAATCTAGTACACGTAGTAGCCTGCAGTTAGTACTAC
66 TGCACTTAGTACTACACATGCGACCTATCAATCTAGAACACGTAGTAGCCTGCAGTTAGTACTAC
* * *
26820169 ACACGTGACTTAACCATCTGATACACGTAATAGCCTACACTTAGCACTACACATGTGATCGACGT
131 ACACGTGACTTAACCATCTGATACACGTAATAGCCTACACTTAGTACTACACACGTGATCGAAGT
*
26820234 TAACGGGTACGGATAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGG
196 TAACGGGTACGCATAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGG
26820291 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTGAATTTAATGGGTACGCATAGTAGCC
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTGAATTTAATGGGTACGCATAGTAGCC
* * * *
26820356 GGCACTTAGTACTACACATGCGATCTATCAATCTAGCACACGTAGTAGCCTACAGTTAGTACTAC
66 TGCACTTAGTACTACACATGCGACCTATCAATCTAGAACACGTAGTAGCCTGCAGTTAGTACTAC
* *
26820421 ACACGTGACTTAACCATCTAATACACGTAATAGCCTACACTTAGTACTACACACGTGATCGATGT
131 ACACGTGACTTAACCATCTGATACACGTAATAGCCTACACTTAGTACTACACACGTGATCGAAGT
26820486 TAACGGGTACGCATAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGG
196 TAACGGGTACGCATAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGG
26820543 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATT
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATT
26820582 CACAATGAAT
Statistics
Matches: 509, Mismatches: 34, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
252 509 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (252 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTGAATTTAATGGGTACGCATAGTAGCC
TGCACTTAGTACTACACATGCGACCTATCAATCTAGAACACGTAGTAGCCTGCAGTTAGTACTAC
ACACGTGACTTAACCATCTGATACACGTAATAGCCTACACTTAGTACTACACACGTGATCGAAGT
TAACGGGTACGCATAGTAGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGG
Found at i:26820402 original size:151 final size:151
Alignment explanation
Indices: 26819898--26820574 Score: 568
Period size: 151 Copynumber: 4.5 Consensus size: 151
26819888 AACACGTAGC
* * * * * *
26819898 AGCCTGCACTTAGTACTACACACGTGA-CTTAACCATTTGATACACGTAGTAGCCTGCACTTAGT
1 AGCCTGCACTTAGTACTACACATGCGATC-TATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
* * ** * * ** * * * *
26819962 ACTACACACGTGATCGAAGT-TAGCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA
65 ACTACACATGCGA-CCTA-TCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
* * * * *
26820026 CCT--A-TCAATCTGGTACACGTAGT
128 -TTGAATTTAAT-GGGTACGCATAGT
* * * * * * *
26820049 AGCCTGCACTTAGTACTACACACGTGATCGAATTTAAT-GGGTACGCATAGTAGCCTGCACTTAG
1 AGCCTGCACTTAGTACTACACATGCGATC-TA-TCAATCTGGTACACGTAGTAGCCTGCACTTAG
* *
26820113 TACTACACATGCAACCTATCAATCTAGTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGAC
64 TACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-
** * * * * *
26820178 TT-AA--CCATCTGATACACGTAAT
128 TTGAATTTAAT-GGGTACGCATAGT
* * * * * * * *
26820200 AGCCTACACTTAGCACTACACATGTGATCGACGTTAA-CGGGTAC-GGATAGTAGCCTGCACTAA
1 AGCCTGCACTTAGTACTACACATGCGATCTA--TCAATCTGGTACACG-TAGTAGCCTGCACTTA
*
26820263 GTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
63 GTACTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
26820328 TTGAATTTAATGGGTACGCATAGT
128 TTGAATTTAATGGGTACGCATAGT
* * * * *
26820352 AGCCGGCACTTAGTACTACACATGCGATCTATCAATCTAGCACACGTAGTAGCCTACAGTTAGTA
1 AGCCTGCACTTAGTACTACACATGCGATCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
* * * * * * * * *
26820417 CTACACACGTGACTTAACCATCTAATACACGTAATAGCCTACACTTAGTACTACACACGTGATCG
66 CTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTG
*
26820482 -ATGTTAACGGGTACGCATAGT
131 AAT-TTAATGGGTACGCATAGT
* *
26820503 AGCCTGCACTAAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
1 AGCCTGCACTTAGTACTACACATGCGATCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
26820568 CTACACA
66 CTACACA
26820575 CGTGATTCAC
Statistics
Matches: 437, Mismatches: 76, Indels: 26
0.81 0.14 0.05
Matches are distributed among these distances:
150 9 0.02
151 353 0.81
152 71 0.16
153 4 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (151 bp):
AGCCTGCACTTAGTACTACACATGCGATCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTA
CTACACATGCGACCTATCAATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATTG
AATTTAATGGGTACGCATAGT
Found at i:26820960 original size:18 final size:20
Alignment explanation
Indices: 26820929--26820975 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
26820919 AAGAATAGGT
*
26820929 TATATAATCAAAATAATCACA
1 TATAT-ATCAAATTAATCACA
*
26820950 TA-ATATCAAATTATTCACA
1 TATATATCAAATTAATCACA
26820969 TATATAT
1 TATATAT
26820976 ACTTACAGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAATTAATCACA
Found at i:26826670 original size:50 final size:50
Alignment explanation
Indices: 26826613--26826946 Score: 348
Period size: 50 Copynumber: 6.6 Consensus size: 50
26826603 CTGGTATGCA
*
26826613 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* * * ** * * * *
26826663 TAATAGCCTACACTTAGTACTACACATGTGATCAAAGTTAA-CGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGGTACACG
*
26826714 TAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* * * * * *
26826764 TAGTAGCCTGCACTTAGTACTACACGCATGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
* ** * * ** * * * *
26826814 TTGTAGCCTAAACTTAGTACTTCATACGTGATCGAAGTTAA-CAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGGTACACG
* *
26826865 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
26826915 TAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
26826947 TCACAACGAA
Statistics
Matches: 223, Mismatches: 55, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
49 6 0.03
50 144 0.65
51 69 0.31
52 4 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACG
Found at i:26826785 original size:101 final size:101
Alignment explanation
Indices: 26826605--26826788 Score: 332
Period size: 101 Copynumber: 1.8 Consensus size: 101
26826595 GAAGCTCTCT
* *
26826605 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAATAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTACACGTAATAGC
26826670 CTACACTTAGTACTACACATGTGATCAAAGTTAACG
66 CTACACTTAGTACTACACATGTGATCAAAGTTAACG
*
26826706 GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTACACGTAATAGC
*
26826771 CTGCACTTAGTACTACAC
66 CTACACTTAGTACTACAC
26826789 GCATGACTTA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 79 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (101 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGTGACCTATCAATCTGGTACACGTAATAGC
CTACACTTAGTACTACACATGTGATCAAAGTTAACG
Found at i:26826907 original size:101 final size:100
Alignment explanation
Indices: 26826764--26826945 Score: 249
Period size: 101 Copynumber: 1.8 Consensus size: 100
26826754 CTGGTACACG
* * *
26826764 TAGTAGCCTGCACTTAGTACTACACGCATGACTTAACCATCTGATACACGTTGTAGCCTAAACTT
1 TAGTAGCCTGCACTTAGTACTACACGCA-GACCTAACAATCTGATACACGTAGTAGCCTAAACTT
* *
26826829 AGTACTTCATACGTGATCGAAGTTAACAGGTACGCA
65 AGTACTACACACGTGATCGAAGTTAACAGGTACGCA
* * **
26826865 TAGTAGCCTGCACTTAGTACTACACATGC-GACCTATCAATCTGGTACACGTAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACAC--GCAGACCTAACAATCTGATACACGTAGTAGCCTAAACT
26826929 TAGTACTACACACGTGA
64 TAGTACTACACACGTGA
26826946 CTCACAACGA
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
101 68 0.97
103 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACGCAGACCTAACAATCTGATACACGTAGTAGCCTAAACTTA
GTACTACACACGTGATCGAAGTTAACAGGTACGCA
Found at i:26826947 original size:151 final size:151
Alignment explanation
Indices: 26826613--26826947 Score: 517
Period size: 151 Copynumber: 2.2 Consensus size: 151
26826603 CTGGTATGCA
* * * * *
26826613 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAATAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAATAGCCTAAACTT
* * *
26826678 AGTACTACACATGTGATCAAAGTTAACGGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGT
66 AGTACTACACACGTGATCAAAGTTAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGC
26826743 GACCTATCAATCTGGTACACG
131 GACCTATCAATCTGGTACACG
* * * **
26826764 TAGTAGCCTGCACTTAGTACTACACGCATGACTTAACCATCTGATACACGTTGTAGCCTAAACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAATAGCCTAAACTT
* * * *
26826829 AGTACTTCATACGTGATCGAAGTTAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGC
66 AGTACTACACACGTGATCAAAGTTAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGC
26826894 GACCTATCAATCTGGTACACG
131 GACCTATCAATCTGGTACACG
26826915 TAGTAGCCTGCACTTAGTACTACACACGTGACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACT
26826948 CACAACGAAT
Statistics
Matches: 165, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
151 165 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (151 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACAATCTGATACACGTAATAGCCTAAACTT
AGTACTACACACGTGATCAAAGTTAACAGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGC
GACCTATCAATCTGGTACACG
Found at i:26827326 original size:18 final size:20
Alignment explanation
Indices: 26827295--26827341 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
26827285 AAGAATAGGT
*
26827295 TATATCATCAAAATAATCACA
1 TATAT-ATCAAATTAATCACA
*
26827316 TA-ATATCAAATTATTCACA
1 TATATATCAAATTAATCACA
26827335 TATATAT
1 TATATAT
26827342 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAATTAATCACA
Found at i:26830794 original size:40 final size:40
Alignment explanation
Indices: 26830757--26830942 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
26830747 GCTACTCGTT
* *
26830757 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
26830797 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
26830837 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
26830877 CAAATGTCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
26830918 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
26830943 CATCATTCAA
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 113 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:26841277 original size:15 final size:15
Alignment explanation
Indices: 26841256--26842047 Score: 1493
Period size: 15 Copynumber: 52.7 Consensus size: 15
26841246 TAGCTTCTTC
26841256 TTTTTTTTCACGAAAAT
1 TTTTTTTTCACG--AAT
26841273 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841288 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841303 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841318 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841333 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841348 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841363 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841378 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841393 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841408 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841423 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841438 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841453 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841468 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841483 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841498 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841513 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841528 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841543 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841558 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841573 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841588 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841603 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841618 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841633 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841648 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841663 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841678 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841693 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841708 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841723 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841738 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841753 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841768 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841783 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841798 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841813 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841828 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841843 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841858 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841873 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841888 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841903 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841918 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841933 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841948 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26841963 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
*
26841978 TTTTTTCTT--C--TT
1 TTTTTT-TTCACGAAT
26841990 CTTTTTTTTCACGAAAAT
1 -TTTTTTTTCACG--AAT
26842008 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26842023 TTTTTTTTCACGAAT
1 TTTTTTTTCACGAAT
26842038 TTTTTTTTCA
1 TTTTTTTTCA
26842048 ACTTGATATC
Statistics
Matches: 765, Mismatches: 2, Indels: 18
0.97 0.00 0.02
Matches are distributed among these distances:
12 3 0.00
13 6 0.01
14 2 0.00
15 727 0.95
16 2 0.00
17 24 0.03
18 1 0.00
ACGTcount: A:0.20, C:0.13, G:0.06, T:0.60
Consensus pattern (15 bp):
TTTTTTTTCACGAAT
Found at i:26842476 original size:46 final size:46
Alignment explanation
Indices: 26842423--26842516 Score: 163
Period size: 46 Copynumber: 2.0 Consensus size: 46
26842413 CAAAGAAAAG
*
26842423 ACCTCGACCCACTATCAA-GAATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATG-ATGATAAGAACCTTGGTATATGATGA
26842469 ACCTCGACCCACTATCAATGATGATAAGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAATGATGATAAGAACCTTGGTATATGATGA
26842515 AC
1 AC
26842517 GCCACACTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 45 0.98
47 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (46 bp):
ACCTCGACCCACTATCAATGATGATAAGAACCTTGGTATATGATGA
Found at i:26844968 original size:12 final size:12
Alignment explanation
Indices: 26844951--26844975 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26844941 ATTTTATAAC
26844951 ATAAATATTGTT
1 ATAAATATTGTT
26844963 ATAAATATTGTT
1 ATAAATATTGTT
26844975 A
1 A
26844976 ATAGCCTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
ATAAATATTGTT
Found at i:26851252 original size:24 final size:24
Alignment explanation
Indices: 26851218--26851313 Score: 88
Period size: 24 Copynumber: 4.0 Consensus size: 24
26851208 AATAAAGCGA
*
26851218 CTTAAAGTAAATAATATAAAAAAG
1 CTTAAAATAAATAATATAAAAAAG
* * * *
26851242 TTTCAAATAAATAATGTATACAAA-
1 CTTAAAATAAATAATATA-AAAAAG
**
26851266 CTTAAAATAAATAATACTAAAGTAG
1 CTTAAAATAAATAATA-TAAAAAAG
*
26851291 CTTAAAATAAATAA-ATACAAAAG
1 CTTAAAATAAATAATATAAAAAAG
26851314 AAAATTAAAA
Statistics
Matches: 55, Mismatches: 14, Indels: 7
0.72 0.18 0.09
Matches are distributed among these distances:
23 5 0.09
24 30 0.55
25 20 0.36
ACGTcount: A:0.59, C:0.07, G:0.06, T:0.27
Consensus pattern (24 bp):
CTTAAAATAAATAATATAAAAAAG
Found at i:26851269 original size:48 final size:48
Alignment explanation
Indices: 26851171--26851304 Score: 139
Period size: 48 Copynumber: 2.8 Consensus size: 48
26851161 TAAAAAGAAA
* *
26851171 TTAAAGTAAAT-AGA-AACAAAGTTTAAAATAAATAATGAATAAAGCGAC
1 TTAAAGTAAATAATATAAAAAAGTTTAAAATAAATAATGAATAAA--GAC
* *
26851219 TTAAAGTAAATAATATAAAAAAGTTTCAAATAAATAATGTATACAA-AC
1 TTAAAGTAAATAATATAAAAAAGTTTAAAATAAATAATGAATA-AAGAC
* ** *
26851267 TTAAAATAAATAATACTAAAGTAGCTTAAAATAAATAA
1 TTAAAGTAAATAATA-TAAAAAAGTTTAAAATAAATAA
26851305 ATACAAAAGA
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
48 27 0.37
49 20 0.27
50 24 0.33
51 2 0.03
ACGTcount: A:0.59, C:0.06, G:0.08, T:0.27
Consensus pattern (48 bp):
TTAAAGTAAATAATATAAAAAAGTTTAAAATAAATAATGAATAAAGAC
Found at i:26851321 original size:26 final size:26
Alignment explanation
Indices: 26851267--26851339 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
26851257 GTATACAAAC
* * **
26851267 TTAAAATAAAT-AATACTAAAGTAGC
1 TTAAAATAAATAAATACAAAAGAAAA
26851292 TTAAAATAAATAAATACAAAAGAAAA
1 TTAAAATAAATAAATACAAAAGAAAA
* *
26851318 TTAAAATGAATAACATGCAAAA
1 TTAAAATAAATAA-ATACAAAA
26851340 TAGTTTAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
25 11 0.28
26 22 0.55
27 7 0.17
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.23
Consensus pattern (26 bp):
TTAAAATAAATAAATACAAAAGAAAA
Found at i:26851403 original size:26 final size:27
Alignment explanation
Indices: 26851374--26851438 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 27
26851364 GAAATTTTGG
*
26851374 AATAAATAATGTGTAAAATA-ATTT-AA
1 AATAAATAATATGTAAAA-ACATTTCAA
* *
26851400 AATAAAGAGTATGTAAAAACATTTCAA
1 AATAAATAATATGTAAAAACATTTCAA
26851427 AATAAATAATAT
1 AATAAATAATAT
26851439 ATAGAAAGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 1 0.03
26 19 0.59
27 12 0.38
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.31
Consensus pattern (27 bp):
AATAAATAATATGTAAAAACATTTCAA
Found at i:26853053 original size:20 final size:21
Alignment explanation
Indices: 26853012--26853057 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
26853002 TGGACTTAAA
26853012 ATTTGGGCTTTTTATTTGGTT
1 ATTTGGGCTTTTTATTTGGTT
* *
26853033 ATTTGGG-TTTTTTTTTTGTT
1 ATTTGGGCTTTTTATTTGGTT
26853053 ATTTG
1 ATTTG
26853058 CCTGGGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.09, C:0.02, G:0.22, T:0.67
Consensus pattern (21 bp):
ATTTGGGCTTTTTATTTGGTT
Found at i:26854688 original size:46 final size:45
Alignment explanation
Indices: 26854619--26854709 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 45
26854609 ACATGAAATC
* *
26854619 AGCAGAAAATTGATGATTAAAGGGCAAAATTGGAATATTGCATAA
1 AGCAGAAAATTGACGATTAAAGGGAAAAATTGGAATATTGCATAA
*
26854664 AGCAGGAAAATTGACGATTTAAGGGAAAAATTGGAATATTGCATAA
1 AGCA-GAAAATTGACGATTAAAGGGAAAAATTGGAATATTGCATAA
26854710 TTAACTAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 4 0.10
46 38 0.90
ACGTcount: A:0.46, C:0.07, G:0.23, T:0.24
Consensus pattern (45 bp):
AGCAGAAAATTGACGATTAAAGGGAAAAATTGGAATATTGCATAA
Found at i:26860059 original size:39 final size:39
Alignment explanation
Indices: 26860015--26860116 Score: 168
Period size: 39 Copynumber: 2.6 Consensus size: 39
26860005 TACCAGCACA
*
26860015 AAGCCTGCGGAACTTTAGCCCGGATACATTTCCAACACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACG
* * *
26860054 AAGCCTGCGGGACTTTAGCCCTGATACATTTCCAGCATG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACG
26860093 AAGCCTGCGGGACTTTAGCCCGGA
1 AAGCCTGCGGGACTTTAGCCCGGA
26860117 ATGTAATACC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACG
Found at i:26871000 original size:39 final size:39
Alignment explanation
Indices: 26870942--26871036 Score: 163
Period size: 39 Copynumber: 2.4 Consensus size: 39
26870932 CACGGAAAGT
*
26870942 CCCGGATACATTTCCAGCACGAAGCCTGCAGGACTTTAG
1 CCCGGATACATTTCCAGCACAAAGCCTGCAGGACTTTAG
* *
26870981 CCCGGATACATTTCTAGCACAAAGCCTGCGGGACTTTAG
1 CCCGGATACATTTCCAGCACAAAGCCTGCAGGACTTTAG
26871020 CCCGGATACATTTCCAG
1 CCCGGATACATTTCCAG
26871037 TGTCTTGAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.25, C:0.31, G:0.22, T:0.22
Consensus pattern (39 bp):
CCCGGATACATTTCCAGCACAAAGCCTGCAGGACTTTAG
Found at i:26877115 original size:5 final size:5
Alignment explanation
Indices: 26877105--26877142 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
26877095 CAAATTGTGA
26877105 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
26877143 GAATACACAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:26881008 original size:35 final size:35
Alignment explanation
Indices: 26880917--26880993 Score: 93
Period size: 36 Copynumber: 2.2 Consensus size: 35
26880907 TCTTTCCACT
* * * *
26880917 TTCTTTCTCTTTGTTTCGTTCTCCTTATTCTGTTTA
1 TTCTTTCTATTTCTTTTGTT-TCTTTATTCTGTTTA
26880953 TTCTTTCTATTTCTTTTGTTTCTTTATT-TGTTTAA
1 TTCTTTCTATTTCTTTTGTTTCTTTATTCTGTTT-A
26880988 TTCTTT
1 TTCTTT
26880994 ATTTACTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 5 0.14
35 14 0.39
36 17 0.47
ACGTcount: A:0.08, C:0.17, G:0.06, T:0.69
Consensus pattern (35 bp):
TTCTTTCTATTTCTTTTGTTTCTTTATTCTGTTTA
Found at i:26881045 original size:23 final size:21
Alignment explanation
Indices: 26881018--26881062 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
26881008 TATTATATTA
26881018 AATTAATATTATATTAACATAAT
1 AATTAATATT-TATTAA-ATAAT
* *
26881041 AATTATTATTTCTTAAATAAT
1 AATTAATATTTATTAAATAAT
26881062 A
1 A
26881063 CGTAAAAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 5 0.25
23 9 0.45
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (21 bp):
AATTAATATTTATTAAATAAT
Found at i:26882110 original size:21 final size:20
Alignment explanation
Indices: 26882086--26882129 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
26882076 ACATAAGGCA
26882086 AAATAAAAATAAATAGAATCT
1 AAATAAAAATAAATA-AATCT
* * *
26882107 AAATAATAATGAATAAATTT
1 AAATAAAAATAAATAAATCT
26882127 AAA
1 AAA
26882130 ACAAATGATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.27
Consensus pattern (20 bp):
AAATAAAAATAAATAAATCT
Found at i:26884203 original size:44 final size:44
Alignment explanation
Indices: 26884111--26884259 Score: 131
Period size: 44 Copynumber: 3.4 Consensus size: 44
26884101 TTCATTGCAT
* * * * * * *
26884111 CTTCAAGGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTACGA
1 CTTCAGGGAGATAAGACTTG-TAACTTCAATCTACCCCACTACAA
* *
26884156 CTTCAGGGAAATAAGACTTGTAACTTCAA-CTTACCCCACTGCAA
1 CTTCAGGGAGATAAGACTTGTAACTTCAATC-TACCCCACTACAA
** ** *
26884200 CTTCAGAGG-GATAAGGTTTGTGGCTTCAATCTACTCCACTACAA
1 CTTCAG-GGAGATAAGACTTGTAACTTCAATCTACCCCACTACAA
26884244 CTTCAGGGAGATAAGA
1 CTTCAGGGAGATAAGA
26884260 TTCACCATGG
Statistics
Matches: 83, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
43 3 0.04
44 60 0.72
45 20 0.24
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (44 bp):
CTTCAGGGAGATAAGACTTGTAACTTCAATCTACCCCACTACAA
Found at i:26884371 original size:94 final size:94
Alignment explanation
Indices: 26884193--26884371 Score: 216
Period size: 94 Copynumber: 1.9 Consensus size: 94
26884183 AACTTACCCC
* * *
26884193 ACTGCAACTTCAGAGGGATAAGGTTTGTGGCTTCAATCTACTCCACTACAACTTCAGGGAGATAA
1 ACTGCAACTTCAGAGGGATAAGGTTTATAGCTTCAATCTACTCCACTACAACTTCAGAGAGATAA
* **
26884258 GATTCACCATGGTGGGTTTGATCCGACCT
66 GATTCACCATCGTCAGTTTGATCCGACCT
* * * * *
26884287 ACTGCAACTTTAGAGGTAT-AGGATTTATAGCTTTAATCTGCTCTACTACAACTTCAGAGAGATA
1 ACTGCAACTTCAGAGGGATAAGG-TTTATAGCTTCAATCTACTCCACTACAACTTCAGAGAGATA
* * *
26884351 AGATTCGCTATCTTCAGTTTG
65 AGATTCACCATCGTCAGTTTG
26884372 CTCCACTGCA
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
93 3 0.04
94 67 0.96
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (94 bp):
ACTGCAACTTCAGAGGGATAAGGTTTATAGCTTCAATCTACTCCACTACAACTTCAGAGAGATAA
GATTCACCATCGTCAGTTTGATCCGACCT
Found at i:26884604 original size:44 final size:44
Alignment explanation
Indices: 26884501--26884800 Score: 175
Period size: 44 Copynumber: 6.7 Consensus size: 44
26884491 TATGGCTTTG
* * * *
26884501 ATCTGCTCCATTGCGACTTCAGGGAGATAAGA-TCTGTTATCTTCA
1 ATCTGCTCCACTGCAACTTCAAGGAGATAAGACT-TGCTA-CTTCA
* *
26884546 GTTTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCTACTTCA
1 ATCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCTACTTCA
* * * ** *
26884590 ACCTGCTCTACTGCAACTTCAGGGAGATAAGGTTTGCTA--T-G
1 ATCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCTACTTCA
* ** * * *
26884631 GTCTAATCTACTGCAACTTC-AGAGAGATAAGATCTAT-TTATTTATAGCTCA
1 ATCTGCTCCACTGCAACTTCAAG-GAGATAAGA-CT-TGCTA---CT---TCA
* * * *
26884682 ATCTGTTCCACTGTATCTTCAAGGAAATAAGA-TTCGCTATCTTCA
1 ATCTGCTCCACTGCAACTTCAAGGAGATAAGACTT-GCTA-CTTCA
* * * *
26884727 GTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTACTACTTCA
1 ATCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCTACTTCA
*
26884771 ACCTGCTCCACTGCAACTTC-AGAGAGATAA
1 ATCTGCTCCACTGCAACTTCAAG-GAGATAA
26884801 AGCCTTCAAT
Statistics
Matches: 193, Mismatches: 44, Indels: 37
0.70 0.16 0.14
Matches are distributed among these distances:
40 1 0.01
41 24 0.12
42 4 0.02
43 2 0.01
44 66 0.34
45 62 0.32
46 3 0.02
48 3 0.02
49 1 0.01
50 3 0.02
51 22 0.11
52 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGCTACTTCA
Found at i:26894909 original size:11 final size:11
Alignment explanation
Indices: 26894893--26894917 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26894883 AGTGTACGAC
26894893 ATGATTGAGAA
1 ATGATTGAGAA
26894904 ATGATTGAGAA
1 ATGATTGAGAA
26894915 ATG
1 ATG
26894918 GGTTCGTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (11 bp):
ATGATTGAGAA
Found at i:26895576 original size:42 final size:42
Alignment explanation
Indices: 26895514--26895595 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
26895504 ACCCAAAGAT
26895514 AAGAAATGAGAAGTTCTATAGAAGTATAAATGACATCAAAAA
1 AAGAAATGAGAAGTTCTATAGAAGTATAAATGACATCAAAAA
* * * *
26895556 AAGAAATGGGGAGTTGTATAGAATTATAAATGACATCAAA
1 AAGAAATGAGAAGTTCTATAGAAGTATAAATGACATCAAA
26895596 GAGTTAAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.51, C:0.06, G:0.20, T:0.23
Consensus pattern (42 bp):
AAGAAATGAGAAGTTCTATAGAAGTATAAATGACATCAAAAA
Found at i:26896516 original size:26 final size:26
Alignment explanation
Indices: 26896487--26896542 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
26896477 TGATACAAAT
26896487 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26896513 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26896539 TGAT
1 TGAT
26896543 GGGAATTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26906746 original size:20 final size:19
Alignment explanation
Indices: 26906709--26906749 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
26906699 TCTCTTTCTT
*
26906709 TTTGCATTCATCCCATGCA
1 TTTGCATTCATCACATGCA
*
26906728 TTTGCATTGCATCATATGCA
1 TTTGCATT-CATCACATGCA
26906748 TT
1 TT
26906750 AAATTTCACG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.41
Consensus pattern (19 bp):
TTTGCATTCATCACATGCA
Found at i:26911037 original size:54 final size:54
Alignment explanation
Indices: 26910853--26911048 Score: 229
Period size: 55 Copynumber: 3.6 Consensus size: 54
26910843 AACTTACCAT
* * *
26910853 TGCCATGTCTT-GCATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* * *
26910905 TGCCATGACATGGCATGGTCTTACATGGGACAT--TTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGGCATGGTCTTACAT--GATATCCTTGCCTTATAG-AACTCATCAA
* * *
26910960 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* * *
26911014 CGCCATGCCTTGGCATGGTCTTACGTGATATCCTT
1 TGCCATGTCTTGGCATGGTCTTACATGATATCCTT
26911049 ATCTTACCAA
Statistics
Matches: 120, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
52 9 0.08
53 25 0.21
54 40 0.33
55 46 0.38
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (54 bp):
TGCCATGTCTTGGCATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:26911079 original size:47 final size:47
Alignment explanation
Indices: 26911027--26911148 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
26911017 CATGCCTTGG
* * *
26911027 CATGGTCTTACGTGATATCCTTATCTTACCAAATGCCATATTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATATTCCAAA
* *
26911074 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATATTCCAAA
26911121 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
26911149 GTGCGAATGC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATATTCCAAA
Found at i:26914016 original size:18 final size:18
Alignment explanation
Indices: 26914002--26914053 Score: 104
Period size: 18 Copynumber: 2.9 Consensus size: 18
26913992 GCAAAGGGTA
26914002 CTTTGAGACCAAAGGGCG
1 CTTTGAGACCAAAGGGCG
26914020 CTTTGAGACCAAAGGGCG
1 CTTTGAGACCAAAGGGCG
26914038 CTTTGAGACCAAAGGG
1 CTTTGAGACCAAAGGG
26914054 GTTTTGAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.29, C:0.21, G:0.33, T:0.17
Consensus pattern (18 bp):
CTTTGAGACCAAAGGGCG
Found at i:26914157 original size:73 final size:73
Alignment explanation
Indices: 26914038--26914183 Score: 292
Period size: 73 Copynumber: 2.0 Consensus size: 73
26914028 CCAAAGGGCG
26914038 CTTTGAGACCAAAGGGGTTTTGAATTGAAAACCCGTAAAAGGTAATTCAAATAAAAAGGGGGGGC
1 CTTTGAGACCAAAGGGGTTTTGAATTGAAAACCCGTAAAAGGTAATTCAAATAAAAAGGGGGGGC
26914103 ATACGATA
66 ATACGATA
26914111 CTTTGAGACCAAAGGGGTTTTGAATTGAAAACCCGTAAAAGGTAATTCAAATAAAAAGGGGGGGC
1 CTTTGAGACCAAAGGGGTTTTGAATTGAAAACCCGTAAAAGGTAATTCAAATAAAAAGGGGGGGC
26914176 ATACGATA
66 ATACGATA
26914184 GTCTTGCTAT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.40, C:0.12, G:0.26, T:0.22
Consensus pattern (73 bp):
CTTTGAGACCAAAGGGGTTTTGAATTGAAAACCCGTAAAAGGTAATTCAAATAAAAAGGGGGGGC
ATACGATA
Found at i:26914976 original size:46 final size:46
Alignment explanation
Indices: 26914913--26915132 Score: 278
Period size: 46 Copynumber: 4.8 Consensus size: 46
26914903 TCAAGAAGCC
* *
26914913 ACAAATCCTATATCCCTGAATTGTAGTAGGATGGATTGAAGAAGAT
1 ACAAATCCTATACCCCTGAATTGTAGTGGGATGGATTGAAGAAGAT
* ** * *
26914959 ACAAATCCCATACCCCTGAATTACAGTGGGATAGATTGAAGATGAT
1 ACAAATCCTATACCCCTGAATTGTAGTGGGATGGATTGAAGAAGAT
* * * * *
26915005 ACAAATCCCATACCCCTGATTTGCAATGGGATGGATTAAAGAAGAT
1 ACAAATCCTATACCCCTGAATTGTAGTGGGATGGATTGAAGAAGAT
* ** * *
26915051 ACAAATCCTATTCCCCTGAGCTGTAGTGGGATGGATTGAAGATGGT
1 ACAAATCCTATACCCCTGAATTGTAGTGGGATGGATTGAAGAAGAT
*
26915097 ACAAATCCTATACCCCTGAGTTGTAGTGGGATGGAT
1 ACAAATCCTATACCCCTGAATTGTAGTGGGATGGAT
26915133 GAAAAAAACC
Statistics
Matches: 150, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 150 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (46 bp):
ACAAATCCTATACCCCTGAATTGTAGTGGGATGGATTGAAGAAGAT
Found at i:26915968 original size:44 final size:45
Alignment explanation
Indices: 26915899--26916019 Score: 147
Period size: 44 Copynumber: 2.7 Consensus size: 45
26915889 AAAATGGGGG
* *
26915899 ATCTTATCTTCCTAAAGTTACAGTGGAGCAGA-TCGAAGCCA-CTA
1 ATCTTATCTCCCTAAAGTTACAGTGGAGCAGACT-GAAGACAGCTA
* **
26915943 ATCTTATCTCCCAAAAGTTGTAGTGGAGCAGACTGAAGACAGCTA
1 ATCTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGACAGCTA
* * *
26915988 ATCTTATTTCCCTAAAGTTACAGCGGAACAGA
1 ATCTTATCTCCCTAAAGTTACAGTGGAGCAGA
26916020 TTTAAGCTAC
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
44 34 0.53
45 30 0.47
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (45 bp):
ATCTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGACAGCTA
Found at i:26916005 original size:45 final size:44
Alignment explanation
Indices: 26915899--26916385 Score: 140
Period size: 44 Copynumber: 10.9 Consensus size: 44
26915889 AAAATGGGGG
*
26915899 ATCTTATCTT-CCTAAAGTTACAGTGGAGCAGATCGAAGCCACTA
1 ATCTTAT-TTCCCTAAAGTTACAGTGGAGCAGATCGAAGACACTA
* * **
26915943 ATCTTATCTCCCAAAAGTTGTAGTGGAGCAGA-CTGAAGACAGCTA
1 ATCTTATTTCCCTAAAGTTACAGTGGAGCAGATC-GAAGACA-CTA
* * ** *
26915988 ATCTTATTTCCCTAAAGTTACAGCGGAACAGATTTAAGCTACAAGTCGCAA
1 ATCTTATTTCCCTAAAGTTACAGTGGAGCAGATCGAAG--AC-A----CTA
* * * * * * * * *
26916039 ACCTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTGAA-ATTACCA
1 ATCTTATTTCCCTAAAGTTACAGTGGAGCAGATCGAAGA-CACTA
** * * * ** * *
26916083 ATTCTTACCTCCTTGAAGTTCCAGCAGAGTAGATCGAAG-CTACAA
1 A-TCTTATTTCCCTAAAGTTACAGTGGAGCAGATCGAAGAC-ACTA
* * * *
26916128 ATCTCT-TCTCCCTGAAA-TTACATTGGAACAGATCGAAGCCAC-A
1 ATCT-TATTTCCCT-AAAGTTACAGTGGAGCAGATCGAAGACACTA
* * * * * *
26916171 ATCCTTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAG-CTACAA
1 AT-CTTATTTCCCTAAAGTTACAGTGGAGCAGATCGAAGAC-ACTA
* * * *
26916216 ATCTCT-TCTCCCTGAAA-TTACATTGGAACAGATCGAAGCCAC-A
1 ATCT-TATTTCCCT-AAAGTTACAGTGGAGCAGATCGAAGACACTA
* * * * * *
26916259 ATCCTTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAG-CTACAA
1 AT-CTTATTTCCCTAAAGTTACAGTGGAGCAGATCGAAGAC-ACTA
* * * *
26916304 ATCTCT-TCTCCCTGAAA-TTACATTGGAACAGATCGAAGCCAC-A
1 ATCT-TATTTCCCT-AAAGTTACAGTGGAGCAGATCGAAGACACTA
* * * * *
26916347 ATCCTTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAG
1 AT-CTTATTTCCCTAAAGTTACAGTGGAGCAGATCGAAG
26916386 CTACAAATCT
Statistics
Matches: 331, Mismatches: 76, Indels: 72
0.69 0.16 0.15
Matches are distributed among these distances:
43 22 0.07
44 193 0.58
45 80 0.24
47 2 0.01
48 3 0.01
51 31 0.09
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (44 bp):
ATCTTATTTCCCTAAAGTTACAGTGGAGCAGATCGAAGACACTA
Found at i:26916182 original size:44 final size:44
Alignment explanation
Indices: 26916109--26916451 Score: 356
Period size: 44 Copynumber: 7.8 Consensus size: 44
26916099 AGTTCCAGCA
*
26916109 GAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTG
1 GAGTAGATCGAAGCCACAAATCTCTTCTCCCTGAAATTACATTG
** * * * *
26916153 GAACAGATCGAAGCCAC-AATC-CTTATCTCCTTGAAGTTCCAGTG
1 GAGTAGATCGAAGCCACAAATCTC-T-TCTCCCTGAAATTACATTG
*
26916197 GAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTG
1 GAGTAGATCGAAGCCACAAATCTCTTCTCCCTGAAATTACATTG
** * * * *
26916241 GAACAGATCGAAGCCAC-AATC-CTTATCTCCTTGAAGTTCCAGTG
1 GAGTAGATCGAAGCCACAAATCTC-T-TCTCCCTGAAATTACATTG
*
26916285 GAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTG
1 GAGTAGATCGAAGCCACAAATCTCTTCTCCCTGAAATTACATTG
** * * * *
26916329 GAACAGATCGAAGCCAC-AATC-CTTATCTCCTTGAAGTTCCAGTG
1 GAGTAGATCGAAGCCACAAATCTC-T-TCTCCCTGAAATTACATTG
*
26916373 GAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTG
1 GAGTAGATCGAAGCCACAAATCTCTTCTCCCTGAAATTACATTG
* * * *
26916417 GAGTAAATCAAAGCCACAAGTCTCATCTCCCTGAA
1 GAGTAGATCGAAGCCACAAATCTCTTCTCCCTGAA
26916452 GTTGCAATGG
Statistics
Matches: 240, Mismatches: 47, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
42 3 0.01
43 15 0.06
44 204 0.85
45 15 0.06
46 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (44 bp):
GAGTAGATCGAAGCCACAAATCTCTTCTCCCTGAAATTACATTG
Found at i:26916201 original size:88 final size:88
Alignment explanation
Indices: 26916081--26916477 Score: 643
Period size: 88 Copynumber: 4.5 Consensus size: 88
26916071 TTGAAATTAC
* * **
26916081 CAATTCTTACCTCCTTGAAGTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAAT
1 CAATCCTTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAAT
26916146 TACATTGGAACAGATCGAAGCCA
66 TACATTGGAACAGATCGAAGCCA
26916169 CAATCCTTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAAT
1 CAATCCTTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAAT
26916234 TACATTGGAACAGATCGAAGCCA
66 TACATTGGAACAGATCGAAGCCA
26916257 CAATCCTTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAAT
1 CAATCCTTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAAT
26916322 TACATTGGAACAGATCGAAGCCA
66 TACATTGGAACAGATCGAAGCCA
26916345 CAATCCTTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAAT
1 CAATCCTTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAAT
** * *
26916410 TACATTGGAGTAAATCAAAGCCA
66 TACATTGGAACAGATCGAAGCCA
* * * * * * *
26916433 CAAGT-CTCATCTCCCTGAAGTTGCAATGGATTAGAACGAGGCTAC
1 CAA-TCCTTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTAC
26916478 TTGAAGAAGA
Statistics
Matches: 293, Mismatches: 15, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
88 292 1.00
89 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (88 bp):
CAATCCTTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAAT
TACATTGGAACAGATCGAAGCCA
Found at i:26923610 original size:13 final size:13
Alignment explanation
Indices: 26923594--26923659 Score: 80
Period size: 13 Copynumber: 5.1 Consensus size: 13
26923584 TTTAAACCAA
26923594 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
**
26923607 ACTTACCAAAAGC
1 ACTTTTCAAAAGC
*
26923620 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGC
*
26923633 ACTTTTGAAAAGC
1 ACTTTTCAAAAGC
26923646 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
26923659 A
1 A
26923660 TTGCCAAACT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
12 4 0.09
13 36 0.84
14 3 0.07
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:26923659 original size:26 final size:26
Alignment explanation
Indices: 26923594--26923667 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 26
26923584 TTTAAACCAA
26923594 ACTTTTCAAAAGCACTTACCAAAAGC
1 ACTTTTCAAAAGCACTTACCAAAAGC
* ***
26923620 ACTTTTTC-ACAGCACTTTTGAAAAGC
1 AC-TTTTCAAAAGCACTTACCAAAAGC
*
26923646 ACTTTTCAAAAGCA-TTGCCAAA
1 ACTTTTCAAAAGCACTTACCAAA
26923668 CTAGCCCTTA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
25 10 0.26
26 23 0.61
27 5 0.13
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.28
Consensus pattern (26 bp):
ACTTTTCAAAAGCACTTACCAAAAGC
Found at i:26925349 original size:4 final size:4
Alignment explanation
Indices: 26925340--26925370 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
26925330 TTATTTGAAT
26925340 TTAA TTAA TTAA TTAA TTAAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TT-AA TTAA TTAA TT
26925371 TTAAAATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:26925362 original size:17 final size:17
Alignment explanation
Indices: 26925337--26925370 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26925327 GAGTTATTTG
*
26925337 AATTTAATTAATTAATT
1 AATTAAATTAATTAATT
26925354 AATTAAATTAATTAATT
1 AATTAAATTAATTAATT
26925371 TTAAAATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTAAATTAATTAATT
Found at i:26927507 original size:10 final size:10
Alignment explanation
Indices: 26927492--26927543 Score: 65
Period size: 9 Copynumber: 5.5 Consensus size: 10
26927482 TTTTACAATT
26927492 TTAAAATTTA
1 TTAAAATTTA
26927502 TTAAAA-TTA
1 TTAAAATTTA
*
26927511 TTAAAAATTA
1 TTAAAATTTA
26927521 -TAAAATTT-
1 TTAAAATTTA
*
26927529 TTAAAATTAA
1 TTAAAATTTA
26927539 TTAAA
1 TTAAA
26927544 TACTTATGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
9 23 0.62
10 14 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
TTAAAATTTA
Found at i:26927511 original size:9 final size:9
Alignment explanation
Indices: 26927488--26927543 Score: 62
Period size: 10 Copynumber: 6.1 Consensus size: 9
26927478 CTATTTTTAC
26927488 AATT-TTAA
1 AATTATTAA
26927496 AATTTATTAA
1 AA-TTATTAA
26927506 AATTATTAAA
1 AATTATT-AA
26927516 AATTA-TAA
1 AATTATTAA
*
26927524 AATTTTTAA
1 AATTATTAA
26927533 AATTAATTAA
1 AATT-ATTAA
26927543 A
1 A
26927544 TACTTATGTG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
8 8 0.20
9 15 0.37
10 18 0.44
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
AATTATTAA
Found at i:26927524 original size:18 final size:18
Alignment explanation
Indices: 26927488--26927543 Score: 69
Period size: 19 Copynumber: 3.1 Consensus size: 18
26927478 CTATTTTTAC
*
26927488 AATTTTAAAATTTATTAA
1 AATTTTAAAAATTATTAA
26927506 AATTATTAAAAATTA-TAA
1 AATT-TTAAAAATTATTAA
*
26927524 AATTTTTAAAATTAATTAA
1 AATTTTAAAAATT-ATTAA
26927543 A
1 A
26927544 TACTTATGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
17 8 0.24
18 12 0.36
19 13 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AATTTTAAAAATTATTAA
Done.