Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr9
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91122320
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2661692 characters in sequence are not A, C, G, or T
File 81 of 279
Found at i:26928658 original size:18 final size:19
Alignment explanation
Indices: 26928635--26928679 Score: 58
Period size: 17 Copynumber: 2.4 Consensus size: 19
26928625 TTAAAAACTT
26928635 TTAAAAATTTTTAAAA-AA
1 TTAAAAATTTTTAAAACAA
*
26928653 TT-AAAACTTTTAAAACAA
1 TTAAAAATTTTTAAAACAA
26928671 TTATAAAAT
1 TTA-AAAAT
26928680 GTATTTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 12 0.55
18 6 0.27
20 4 0.18
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (19 bp):
TTAAAAATTTTTAAAACAA
Found at i:26928678 original size:27 final size:28
Alignment explanation
Indices: 26928618--26928678 Score: 79
Period size: 27 Copynumber: 2.1 Consensus size: 28
26928608 TTTTCTAACA
* *
26928618 AAAACAATTAAAAACTTTTAAAAATTTTT
1 AAAA-AATTAAAAACTTTTAAAAAATTAT
26928647 AAAAAATT-AAAACTTTTAAAACAATTAT
1 AAAAAATTAAAAACTTTTAAAA-AATTAT
26928675 AAAA
1 AAAA
26928679 TGTATTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 13 0.45
28 12 0.41
29 4 0.14
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.33
Consensus pattern (28 bp):
AAAAAATTAAAAACTTTTAAAAAATTAT
Found at i:26928888 original size:39 final size:39
Alignment explanation
Indices: 26928839--26928913 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
26928829 TTTGTAAGTG
* *
26928839 TTTTTTATAATTTTATAAT-TTTTGTATCTTTATATAGAA
1 TTTTTAATAATTTTATAATAATTTGTAT-TTTATATAGAA
*
26928878 TTTTTAATAATTTTATAATAATTTGTATTTTTTATA
1 TTTTTAATAATTTTATAATAATTTGTATTTTATATA
26928914 ATGTCTATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
39 25 0.78
40 7 0.22
ACGTcount: A:0.32, C:0.01, G:0.04, T:0.63
Consensus pattern (39 bp):
TTTTTAATAATTTTATAATAATTTGTATTTTATATAGAA
Found at i:26943701 original size:39 final size:40
Alignment explanation
Indices: 26943611--26943774 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
26943601 CGGAATTTAA
** *
26943611 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
26943651 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26943690 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
26943730 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26943770 CCGGA
1 CCGGA
26943775 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26947016 original size:23 final size:23
Alignment explanation
Indices: 26946986--26947041 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
26946976 TTATACGCTT
26946986 AAAGTACCTTGGCATTCTTTGGA
1 AAAGTACCTTGGCATTCTTTGGA
26947009 AAAGTACCTTGGCATTCTTTGGA
1 AAAGTACCTTGGCATTCTTTGGA
* *
26947032 TAAGTCCCTT
1 AAAGTACCTT
26947042 TCCGAAATGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (23 bp):
AAAGTACCTTGGCATTCTTTGGA
Found at i:26949133 original size:18 final size:18
Alignment explanation
Indices: 26949106--26949152 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
26949096 TAAGTAAAAT
*
26949106 TATTTAAAAAATTATAAA
1 TATTTTAAAAATTATAAA
26949124 TATTTT-AAAATTATAAA
1 TATTTTAAAAATTATAAA
*
26949141 TTTTATTAAAAA
1 TATT-TTAAAAA
26949153 CAACATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 14 0.56
18 7 0.28
19 4 0.16
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TATTTTAAAAATTATAAA
Found at i:26949135 original size:17 final size:18
Alignment explanation
Indices: 26949113--26949151 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
26949103 AATTATTTAA
26949113 AAAATTATAAATATT-TT
1 AAAATTATAAATATTATT
*
26949130 AAAATTATAAATTTTATT
1 AAAATTATAAATATTATT
26949148 AAAA
1 AAAA
26949152 ACAACATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAATTATAAATATTATT
Found at i:26955508 original size:46 final size:45
Alignment explanation
Indices: 26955402--26955522 Score: 163
Period size: 45 Copynumber: 2.7 Consensus size: 45
26955392 ATTCAAACCT
* * *
26955402 GTAAGACCATAGTTGAAAGACATTATGGCAATATGACGGAAACAA
1 GTAAGACCATAGTTGAAAGACACTATGACAAAATGACGGAAACAA
* * *
26955447 ATAAGACCATAGTTGAATGACACTATGACAAAATGATGGAAA-ATGA
1 GTAAGACCATAGTTGAAAGACACTATGACAAAATGACGGAAACA--A
26955493 GTAAGACCATAGTTGAAAGACACTATGACA
1 GTAAGACCATAGTTGAAAGACACTATGACA
26955523 TTAAGTCGAA
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
44 1 0.02
45 36 0.55
46 29 0.44
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (45 bp):
GTAAGACCATAGTTGAAAGACACTATGACAAAATGACGGAAACAA
Found at i:26957415 original size:68 final size:65
Alignment explanation
Indices: 26957305--26957556 Score: 212
Period size: 68 Copynumber: 3.8 Consensus size: 65
26957295 ATACAGATGG
** * * *
26957305 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGAC
1 TATGTAGCTAGGTCACATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACGAGA-
26957368 ATTA
63 A-TA
*
26957372 TGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-GAAT
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGAAT
26957436 A
65 A
* * * ** * * * *
26957437 TATGTAGTTAGGTCGCATGCGTTTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAG-A
1 TATGTAGCTAGGTCACATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAA
26957501 TA
64 TA
* * *
26957503 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
26957557 CAAAATTTTG
Statistics
Matches: 150, Mismatches: 27, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.13
64 22 0.15
65 21 0.14
66 31 0.21
67 7 0.05
68 48 0.32
69 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (65 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGAATA
Found at i:26957534 original size:66 final size:65
Alignment explanation
Indices: 26957350--26957534 Score: 155
Period size: 66 Copynumber: 2.8 Consensus size: 65
26957340 CATCATGTGT
* * *
26957350 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCACATGGGTGATACT-A-TGTGTACACCA
1 ACAAGAGAGCTACG-GA-A-TA-AATG-AGCTAGGTCACATGGGTGATACTAAGTGAGGACACCA
26957413 TGTAG
61 TGTAG
* * * * * * *
26957418 ACAAGAGAGCTACGGAATATATGTAGTTAGGTCGCATGCGT-TTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGGAATAAATG-AGCTAGGTCACATGGGTGATACTAAGTG-AGGACACCATGT
26957482 AG
64 AG
*
26957484 ACAAGAGAGCTAC-GAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACAAGAGAGCTACGGA-ATAAA-TGAGCTAGGTCACATGGGTGATACTAAGTG
26957535 TTCACCATGT
Statistics
Matches: 95, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
63 2 0.02
64 19 0.20
65 19 0.20
66 37 0.39
67 4 0.04
68 14 0.15
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.23
Consensus pattern (65 bp):
ACAAGAGAGCTACGGAATAAATGAGCTAGGTCACATGGGTGATACTAAGTGAGGACACCATGTAG
Found at i:26960057 original size:16 final size:17
Alignment explanation
Indices: 26960036--26960074 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
26960026 GTTGTGGATT
26960036 CTTCTTATTTCC-AAGG
1 CTTCTTATTTCCAAAGG
*
26960052 CTTCTTGTTTCCAAAGG
1 CTTCTTATTTCCAAAGG
26960069 -TTCTTA
1 CTTCTTA
26960075 AGACTTCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.18, C:0.23, G:0.13, T:0.46
Consensus pattern (17 bp):
CTTCTTATTTCCAAAGG
Found at i:26960494 original size:22 final size:21
Alignment explanation
Indices: 26960452--26960495 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
26960442 TGGGTAAATG
*
26960452 TTTTTCAAACGATATTGATTT
1 TTTTTCAAACAATATTGATTT
*
26960473 TTTTTCAAACAATATTGAATT
1 TTTTTCAAACAATATTGATTT
26960494 TT
1 TT
26960496 ACATATTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.32, C:0.09, G:0.07, T:0.52
Consensus pattern (21 bp):
TTTTTCAAACAATATTGATTT
Found at i:26962972 original size:44 final size:44
Alignment explanation
Indices: 26962873--26962994 Score: 151
Period size: 44 Copynumber: 2.8 Consensus size: 44
26962863 AACTCGTACA
* * *
26962873 ATGCCAATGTCCCAGACGTGGTCTTACATGT-AATCGCATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCGCAAATCG
* ** *
26962916 ATGCC-ACTGTCCCAAACAAGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAAC-GTCCCAGACGTGGTCTTACACGTAAATCGCAAATCG
26962960 ATGCCAACGTCCCAGACGTGGTCTTACAC-TAAATC
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATC
26962995 ACATATCAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
42 1 0.02
43 30 0.45
44 33 0.50
45 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCGCAAATCG
Found at i:26971469 original size:31 final size:31
Alignment explanation
Indices: 26971433--26971494 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
26971423 GTACTCAAGC
26971433 ATACCAACAATTTCACATTCATGAAAGACTA
1 ATACCAACAATTTCACATTCATGAAAGACTA
*
26971464 ATACCAACAATTTGACATTCATGAAAGACTA
1 ATACCAACAATTTCACATTCATGAAAGACTA
26971495 CTTTGCATTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.45, C:0.21, G:0.08, T:0.26
Consensus pattern (31 bp):
ATACCAACAATTTCACATTCATGAAAGACTA
Found at i:26972242 original size:46 final size:46
Alignment explanation
Indices: 26972147--26972355 Score: 194
Period size: 46 Copynumber: 4.5 Consensus size: 46
26972137 ATGCTGAAGC
* * *
26972147 CATGTCCCAGACATGGTCTTACACTGAC--ACATCTTGTA-GCCGATA
1 CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGGCCGATG
* *
26972192 CATGTCCCAGGCATGTCTTACACTGGCTTACATCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATG
* * * * *
26972238 CATGTCCCAAACATGTCTTACACTAGCTCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCCGATG
** * * *
26972284 CCATGTCCCAGACATGGTCTTACACTGGCTTTGATAAT-GTGGCCGATT
1 -CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-CTCGAGGCCGATG
26972332 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
26972356 AGCACACAAT
Statistics
Matches: 135, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
44 12 0.09
45 14 0.10
46 59 0.44
47 29 0.21
48 20 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATG
Found at i:26977968 original size:18 final size:18
Alignment explanation
Indices: 26977932--26977969 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
26977922 GAAATATTTA
*
26977932 TTTTGATGTTTTTAGTAT
1 TTTTGATGTTTATAGTAT
26977950 TTTTGATGTATTATA-TAT
1 TTTTGATGT-TTATAGTAT
26977968 TT
1 TT
26977970 AAAAATAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.66
Consensus pattern (18 bp):
TTTTGATGTTTATAGTAT
Found at i:26981402 original size:95 final size:96
Alignment explanation
Indices: 26981236--26981415 Score: 263
Period size: 95 Copynumber: 1.9 Consensus size: 96
26981226 CGGAAAGAGG
* * * * **
26981236 AATACGATTGAGCTATTACCTTTTGTGCAATATTATTGGTGTAGTTTAAAAGTTCATAATGGTTT
1 AATACAATTGAGATATTACCTTTTGTGCAATACTATTGGTGTAGTTTAAAAGATCATAAAAGTTT
* *
26981301 CTAATGTTCAATTAAATATCTAAATAAAGAT
66 CCAATGTCCAATTAAATATCTAAATAAAGAT
* *
26981332 AATACAATTGAGATATTACC-TTTGTGTAATGCTATTGGTGTAGTTTAAAAGATCATAAAAGTTT
1 AATACAATTGAGATATTACCTTTTGTGCAATACTATTGGTGTAGTTTAAAAGATCATAAAAGTTT
26981396 CCAATGTCCAATTAAATATC
66 CCAATGTCCAATTAAATATC
26981416 CAACTAGAGA
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
95 56 0.76
96 18 0.24
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (96 bp):
AATACAATTGAGATATTACCTTTTGTGCAATACTATTGGTGTAGTTTAAAAGATCATAAAAGTTT
CCAATGTCCAATTAAATATCTAAATAAAGAT
Found at i:26987618 original size:79 final size:81
Alignment explanation
Indices: 26987476--26987659 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
26987466 TACTCGTTCA
* * * *
26987476 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTTGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGA
* *
26987540 TTTAGTAAC-TCGCACC
66 TATAGTAACTTAGCA-C
**
26987556 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-AGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
* *
26987618 ATATGGTCACTTAGCAC
65 ATATAGTAACTTAGCAC
*
26987635 AAAGCCTTCGGGACTTAGCCCGGAA
1 AATGCCTTCGGGACTTAGCCCGGAA
26987660 ATCATTCGAA
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 2 0.02
79 58 0.65
80 29 0.33
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:26987658 original size:40 final size:40
Alignment explanation
Indices: 26987455--26987658 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
26987445 CGGAATTTAA
** *
26987455 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
26987495 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26987535 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26987574 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-AGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
26987614 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26987654 CCGGA
1 CCGGA
26987659 AATCATTCGA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.24
40 92 0.67
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26991278 original size:50 final size:50
Alignment explanation
Indices: 26991203--26991464 Score: 391
Period size: 50 Copynumber: 5.2 Consensus size: 50
26991193 CAATCATTTA
* *
26991203 GCCGAATACACAAGATCAAATATAACATCACATATGTGCATACCTATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
26991253 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
* * * *
26991303 GCTGAATATACAAGATCAAACATAGCATCACATATGTACATACCTTTGA-G
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTAT-ATG
* **
26991353 GCCGAATATACAAGATCAAATATATCATCACATATGTACATACCTATGCG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
** * *
26991403 GATGAATATACAAGATCAAATATAACTTCACATATGTACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
26991453 GCCGAATATACA
1 GCCGAATATACA
26991465 TGGTCGTTTA
Statistics
Matches: 192, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
50 191 0.99
51 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (50 bp):
GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATATG
Found at i:26999268 original size:50 final size:49
Alignment explanation
Indices: 26999214--26999423 Score: 285
Period size: 50 Copynumber: 4.2 Consensus size: 49
26999204 CTCATTTAGC
* * * * *
26999214 CGAATACACAAGTTCAAATATAACATCACATATGTAAATACATATATGG
1 CGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGG
* ** *
26999263 TCGAATATACAAGATCAAACATAACAAAACCTATGTACATACCTATGTGG
1 -CGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGG
*
26999313 CTGAATATACAAGATCAAATATAACATCACGTATGTACATACCTATGTGG
1 C-GAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGG
*
26999363 CCGAATATACAAGATCAAATATAACATCACATATGTACATATCTATGTGG
1 -CGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGG
26999413 CCGAATATACA
1 -CGAATATACA
26999424 TGGTCATTTA
Statistics
Matches: 143, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
49 1 0.01
50 141 0.99
51 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.12, T:0.26
Consensus pattern (49 bp):
CGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGG
Found at i:27002326 original size:14 final size:14
Alignment explanation
Indices: 27002307--27002341 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
27002297 CAAATTACAT
27002307 GTTAGAATAGTATC
1 GTTAGAATAGTATC
27002321 GTTAGAATAGTATC
1 GTTAGAATAGTATC
*
27002335 ATTAGAA
1 GTTAGAA
27002342 AAAAAATGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.34
Consensus pattern (14 bp):
GTTAGAATAGTATC
Found at i:27003326 original size:21 final size:22
Alignment explanation
Indices: 27003297--27003343 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
27003287 AAGAATGACA
*
27003297 AAAAAAACAATAAAACACCA-C
1 AAAAAAACAATAAAACAACATC
*
27003318 AAAAGAACAATAAAACAACATC
1 AAAAAAACAATAAAACAACATC
27003340 AAAA
1 AAAA
27003344 CAGCACCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.72, C:0.19, G:0.02, T:0.06
Consensus pattern (22 bp):
AAAAAAACAATAAAACAACATC
Found at i:27003343 original size:11 final size:11
Alignment explanation
Indices: 27003308--27003429 Score: 74
Period size: 11 Copynumber: 11.4 Consensus size: 11
27003298 AAAAAACAAT
*
27003308 AAAACACCA-C
1 AAAACAACATC
*
27003318 AAAAGAACAAT-
1 AAAACAAC-ATC
27003329 AAAACAACATC
1 AAAACAACATC
*
27003340 AAAACAGCA-C
1 AAAACAACATC
* *
27003350 CAAACAACATA
1 AAAACAACATC
* *
27003361 AAAATAGCA-C
1 AAAACAACATC
* *
27003371 CAAACAACATA
1 AAAACAACATC
27003382 AAAACAACA-C
1 AAAACAACATC
*
27003392 CAAACAACATC
1 AAAACAACATC
* *
27003403 ACCAACAACACC
1 A-AAACAACATC
*
27003415 AAAACAACACC
1 AAAACAACATC
27003426 AAAA
1 AAAA
27003430 ACCTACAAAA
Statistics
Matches: 83, Mismatches: 22, Indels: 13
0.70 0.19 0.11
Matches are distributed among these distances:
10 30 0.36
11 44 0.53
12 9 0.11
ACGTcount: A:0.63, C:0.30, G:0.02, T:0.05
Consensus pattern (11 bp):
AAAACAACATC
Found at i:27003354 original size:21 final size:21
Alignment explanation
Indices: 27003330--27003429 Score: 119
Period size: 21 Copynumber: 4.7 Consensus size: 21
27003320 AAGAACAATA
*
27003330 AAACAACATCAAAACAGCACC
1 AAACAACATCAAAACAACACC
* * *
27003351 AAACAACATAAAAATAGCACC
1 AAACAACATCAAAACAACACC
*
27003372 AAACAACATAAAAACAACACC
1 AAACAACATCAAAACAACACC
*
27003393 AAACAACATCACCAACAACACC
1 AAACAACATCA-AAACAACACC
*
27003415 AAAACAACACCAAAA
1 -AAACAACATCAAAA
27003430 ACCTACAAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
21 48 0.70
22 11 0.16
23 10 0.14
ACGTcount: A:0.62, C:0.31, G:0.02, T:0.05
Consensus pattern (21 bp):
AAACAACATCAAAACAACACC
Found at i:27011249 original size:37 final size:37
Alignment explanation
Indices: 27011191--27012038 Score: 1669
Period size: 37 Copynumber: 22.9 Consensus size: 37
27011181 GCTCAGACGA
* * *
27011191 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011228 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011265 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011302 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011339 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011376 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011413 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011450 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011487 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011524 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011561 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011598 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011635 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011672 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011709 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011746 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011783 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011820 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011857 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011894 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011931 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27011968 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
27012005 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
27012039 ATATATTTCC
Statistics
Matches: 808, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 808 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:27015064 original size:61 final size:61
Alignment explanation
Indices: 27014997--27015133 Score: 167
Period size: 60 Copynumber: 2.3 Consensus size: 61
27014987 CAGTGTTAAC
* * *
27014997 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCCTTAGCCCATATCAATATCAACCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
27015058 TGGGCC-TAGCCCATATCAGTATCAACCTGGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTTAGCCCATATCAATATCAACCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
27015118 TGGGCCTTAG-CCATAT
1 TGGGCCTTAGCCCATAT
27015134 TAACACAGTT
Statistics
Matches: 67, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
60 49 0.73
61 16 0.24
62 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (61 bp):
TGGGCCTTAGCCCATATCAATATCAACCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:27022962 original size:40 final size:40
Alignment explanation
Indices: 27022878--27023061 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
27022868 TTGAATGCTG
* * * *
27022878 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
27022917 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
27022958 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
27022998 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
27023038 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
27023062 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:27023015 original size:80 final size:81
Alignment explanation
Indices: 27022878--27023058 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
27022868 TTGAATGCTG
* *
27022878 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
27022942 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
27022958 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
27023019 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
27023038 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
27023059 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:27030043 original size:79 final size:81
Alignment explanation
Indices: 27029941--27030125 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
27029931 GCTACTCGTT
* * *
27029941 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
27030004 GGATTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
27030021 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
27030085 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
27030101 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
27030126 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.61
80 33 0.36
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:27030125 original size:40 final size:41
Alignment explanation
Indices: 27029941--27030125 Score: 213
Period size: 40 Copynumber: 4.6 Consensus size: 41
27029931 GCTACTCGTT
* *
27029941 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
* * *
27029981 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
*
27030021 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTCGCA
* * * *
27030060 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTCGCA
27030101 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
27030126 CATCATTCAA
Statistics
Matches: 122, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
38 3 0.02
39 30 0.25
40 76 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTCGCA
Found at i:27033104 original size:140 final size:138
Alignment explanation
Indices: 27032874--27033223 Score: 368
Period size: 140 Copynumber: 2.5 Consensus size: 138
27032864 TAATGTTTCT
* * * *
27032874 ATCCTTGAGTCTTGGGTTTGATTTCTCTTCTACTCACATTTGTATTTTTTATTTCATGTTGCTTC
1 ATCCTTGAGTCTTAGG-TTCAATTCT-TTCTACTCATATTTGTATTTTTTATTTCATGTTGCTTC
* *
27032939 AGGCTTTTTAAAATTTTAATTAA-TTTTT-TTAAACATATTAGTTCTTTAGTTAGATGGTTAGAT
64 AAG-TTTTT-AAATTTTAATTAATTTTTTCTTAAACATACTAGTTCTTTAGTTAGATGGTTAGAT
* *
27033002 AGTTGCAAATAC
127 AATTACAAATAC
* *
27033014 ATCCTTGAGTCTTAGGTTCAAATTCTTTCCTACTTATATTTATATTTTTTATTTCATGTTGCTTC
1 ATCCTTGAGTCTTAGGTTC-AATTCTTT-CTACTCATATTTGTATTTTTTATTTCATGTTGCTTC
** * * * * *
27033079 AAGTTTTT-TTTTTTAATTTTAAATTTTTTCTTTAATATACTAGTTCTTTCGTTGGATGGTTATA
64 AAGTTTTTAAATTTTAA--TT-AATTTTTTCTTAAACATACTAGTTCTTTAGTTAGATGGTTAGA
*
27033143 TAATTACAATTAC
126 TAATTACAAATAC
* * * *
27033156 ATCCTT-AGTCTCAAGTTCAATTCCTTTACTACTCATATTTGTA-TTTTTATTTTATGTTACTTC
1 ATCCTTGAGTCTTAGGTTCAATT-CTTT-CTACTCATATTTGTATTTTTTATTTCATGTTGCTTC
27033219 AAGTT
64 AAGTT
27033224 AGAAGCAACA
Statistics
Matches: 177, Mismatches: 25, Indels: 16
0.81 0.11 0.07
Matches are distributed among these distances:
137 6 0.03
139 11 0.06
140 84 0.47
141 32 0.18
142 44 0.25
ACGTcount: A:0.24, C:0.13, G:0.11, T:0.52
Consensus pattern (138 bp):
ATCCTTGAGTCTTAGGTTCAATTCTTTCTACTCATATTTGTATTTTTTATTTCATGTTGCTTCAA
GTTTTTAAATTTTAATTAATTTTTTCTTAAACATACTAGTTCTTTAGTTAGATGGTTAGATAATT
ACAAATAC
Found at i:27035019 original size:21 final size:22
Alignment explanation
Indices: 27034993--27035038 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
27034983 ATTATTATCG
27034993 TAAAAGAG-TAACATTCAAAAT
1 TAAAAGAGATAACATTCAAAAT
* **
27035014 TAAAAGGGATAAGTTTCAAAAT
1 TAAAAGAGATAACATTCAAAAT
27035036 TAA
1 TAA
27035039 TATGGGTCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.54, C:0.07, G:0.13, T:0.26
Consensus pattern (22 bp):
TAAAAGAGATAACATTCAAAAT
Found at i:27035229 original size:25 final size:26
Alignment explanation
Indices: 27035201--27035251 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
27035191 CTTATTTCAT
27035201 TAAATAAAAAAT-TTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
27035226 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
27035252 AAACAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:27035244 original size:26 final size:24
Alignment explanation
Indices: 27035213--27035261 Score: 80
Period size: 26 Copynumber: 2.0 Consensus size: 24
27035203 AATAAAAAAT
27035213 TTTAAAAACATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
27035239 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
27035262 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:27038722 original size:56 final size:58
Alignment explanation
Indices: 27038630--27038783 Score: 152
Period size: 56 Copynumber: 2.7 Consensus size: 58
27038620 TTGGATAAAG
* * * * ** *
27038630 AAAATTTGAAGTCCCAATATGAGAATATTTATCAAGTTCAGGGCCTAACTTG-A-AAAA
1 AAAATTT-AAGCCCCAATGTGAGAAAAATTGCCAAGTTCAGGACCTAACTTGAACAAAA
* *
27038687 AAAATTTAAGCCCCAATGTGAGAACAATTGCCAAGTTCAGGACCTAATTTGAACAAAA
1 AAAATTTAAGCCCCAATGTGAGAAAAATTGCCAAGTTCAGGACCTAACTTGAACAAAA
* * * *
27038745 AAAATTGAAACCCCATTGTG-GAAAAAGTTGCTAAGTTCA
1 AAAATTTAAGCCCCAATGTGAGAAAAA-TTGCCAAGTTCA
27038784 AGTCTTAAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
56 36 0.44
57 13 0.16
58 32 0.40
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.25
Consensus pattern (58 bp):
AAAATTTAAGCCCCAATGTGAGAAAAATTGCCAAGTTCAGGACCTAACTTGAACAAAA
Found at i:27038781 original size:58 final size:56
Alignment explanation
Indices: 27038662--27038783 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 56
27038652 GAATATTTAT
* * * *
27038662 CAAGTTCAGGGCCTAACTTGAAAAAAAAATTTAAGCCCCAATGTGAGAACAATTGC
1 CAAGTTCAGGACCTAACTTGAAAAAAAAATTGAAACCCCAATGTGAGAAAAATTGC
* *
27038718 CAAGTTCAGGACCTAATTTGAACAAAAAAAATTGAAACCCCATTGTG-GAAAAAGTTGC
1 CAAGTTCAGGACCTAACTTG-A-AAAAAAAATTGAAACCCCAATGTGAGAAAAA-TTGC
*
27038776 TAAGTTCA
1 CAAGTTCA
27038784 AGTCTTAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
56 18 0.32
57 6 0.11
58 32 0.57
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (56 bp):
CAAGTTCAGGACCTAACTTGAAAAAAAAATTGAAACCCCAATGTGAGAAAAATTGC
Found at i:27039192 original size:21 final size:21
Alignment explanation
Indices: 27039168--27039222 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
27039158 AAAAACTTTC
* *
27039168 AAAATTAATTTTTAGATATAT
1 AAAATTAATTTTAAAATATAT
** *
27039189 AAAACAAAATTTAAAATATAT
1 AAAATTAATTTTAAAATATAT
*
27039210 AAAATTTATTTTA
1 AAAATTAATTTTA
27039223 CCGTGAAAAA
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (21 bp):
AAAATTAATTTTAAAATATAT
Found at i:27042842 original size:47 final size:46
Alignment explanation
Indices: 27042769--27043037 Score: 178
Period size: 47 Copynumber: 5.8 Consensus size: 46
27042759 TGGGTAAGGA
* * *
27042769 GCCGATGCCATGTCCCAGACACGGTCTTACACTAG-TTCATATCTCAT
1 GCCGATGCCATGTCCCAGACA-TGTCTTACACTAGCTACATCT-TCAT
* * * * *
27042816 GTCGATGCCATGTCCTAGACATGGTCTCACACTAACTATCATC-TCGT
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTA-CATCTTCAT
* * *
27042863 AGCCAATG-CATGTCCCAGACATGTCTTACAC-AGGCTTACATCTTGAG
1 -GCCGATGCCATGTCCCAGACATGTCTTACACTA-GC-TACATCTTCAT
* * *
27042910 GTCGATG-CATGTCCTAGACATGTCTTACACTAGC-ACCCATCTTGAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTA--CATCTTCAT
* * ** *
27042956 GCCAATGCCATGTCCCAGACATAGTCTTACACTGGCCCT-CATAAT-GT
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTAG--CTACATCTTCAT
*
27043003 GGCTGATG-CATGTCCCAGACATGTCTTACACTAGC
1 -GCCGATGCCATGTCCCAGACATGTCTTACACTAGC
27043038 CCACAATAAC
Statistics
Matches: 176, Mismatches: 30, Indels: 35
0.73 0.12 0.15
Matches are distributed among these distances:
44 2 0.01
45 1 0.01
46 66 0.38
47 77 0.44
48 26 0.15
49 3 0.02
50 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTAGCTACATCTTCAT
Found at i:27042922 original size:46 final size:44
Alignment explanation
Indices: 27042868--27043033 Score: 154
Period size: 46 Copynumber: 3.6 Consensus size: 44
27042858 CTCGTAGCCA
*
27042868 ATGCATGTCCCAGACATGTCTTACACAGGCTTACATCTTGAGGTCG
1 ATGCATGTCCCAGACATGTCTTACACAGGCAT-CATCTTGAGG-CG
* * * *
27042914 ATGCATGTCCTAGACATGTCTTACACTA-GCACCCATCTTGATGCCA
1 ATGCATGTCCCAGACATGTCTTACAC-AGGCA-TCATCTTGA-GGCG
* * ** *
27042960 ATGCCATGTCCCAGACATAGTCTTACACTGGCCCTCATAATGTGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACAGG-CATCATCTTGAGGC-G
27043008 ATGCATGTCCCAGACATGTCTTACAC
1 ATGCATGTCCCAGACATGTCTTACAC
27043034 TAGCCCACAA
Statistics
Matches: 98, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
46 48 0.49
47 31 0.32
48 18 0.18
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (44 bp):
ATGCATGTCCCAGACATGTCTTACACAGGCATCATCTTGAGGCG
Found at i:27043024 original size:94 final size:92
Alignment explanation
Indices: 27042816--27043037 Score: 245
Period size: 94 Copynumber: 2.4 Consensus size: 92
27042806 CATATCTCAT
* * * * *
27042816 GTCGATGCCATGTCCTAGACATGGTCTCACACTAACTA-TCATCTCG-TAGCCAATGCATGTCCC
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-ACCCATCTTGAT-GCCAATGCATGTCCC
* **
27042879 AGACATGTCTTACACAGGCTTACATCTTGAG
62 AGACATGTCTTACACAGGCCTACATAATGAG
*
27042910 GTCGATGCATGTCCTAGACATGTCTTACACTAGCACCCATCTTGATGCCAATGCCATGTCCCAGA
1 GTCGATGCATGTCCCAGACATGTCTTACACTAGCACCCATCTTGATGCCAATG-CATGTCCCAGA
* *
27042975 CATAGTCTTACACTGGCCCT-CATAATGTG
65 CAT-GTCTTACACAGG-CCTACATAATGAG
27043004 G-CTGATGCATGTCCCAGACATGTCTTACACTAGC
1 GTC-GATGCATGTCCCAGACATGTCTTACACTAGC
27043038 CCACAATAAC
Statistics
Matches: 112, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
91 1 0.01
92 24 0.21
93 30 0.27
94 55 0.49
95 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (92 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTAGCACCCATCTTGATGCCAATGCATGTCCCAGAC
ATGTCTTACACAGGCCTACATAATGAG
Found at i:27047200 original size:25 final size:25
Alignment explanation
Indices: 27047172--27047222 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
27047162 CACTAAAGCT
*
27047172 AAGTAAGCTTCATATCCTTTTCTCA
1 AAGTAAGCTTCATATCATTTTCTCA
*
27047197 AAGTAAGCTTCATGTCATTTTCTCA
1 AAGTAAGCTTCATATCATTTTCTCA
27047222 A
1 A
27047223 CTATTTCTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.39
Consensus pattern (25 bp):
AAGTAAGCTTCATATCATTTTCTCA
Found at i:27050487 original size:47 final size:48
Alignment explanation
Indices: 27050398--27050516 Score: 129
Period size: 47 Copynumber: 2.5 Consensus size: 48
27050388 GGTAAAGAGC
* * * *
27050398 TGATGCCATGTCCCAGACACGGTCCTACGCTAGCTTAAATCTCAT-GT
1 TGATGCCATGTCCCAGACATGGTCTTACACTAACTTAAATCTCATAGT
* * *
27050445 TGATGCCATGTCCTAGACATGGTCTTACACTAAC-TATCATCTCGTAGT
1 TGATGCCATGTCCCAGACATGGTCTTACACTAACTTA-AATCTCATAGT
*
27050493 CGATG-CATGTCCCAGACAT-GTCTT
1 TGATGCCATGTCCCAGACATGGTCTT
27050517 CTACAGGCTT
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
46 7 0.11
47 48 0.79
48 6 0.10
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (48 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTAACTTAAATCTCATAGT
Found at i:27052192 original size:26 final size:26
Alignment explanation
Indices: 27052163--27052232 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
27052153 ACACGTCAGA
* *
27052163 AAATGGAAATCTTTGTGGGGTATCTG
1 AAATGGAAACCTTTGTGGGGTATCCG
* *
27052189 AAATGGAAGCCTTTGTGGTGTATCCG
1 AAATGGAAACCTTTGTGGGGTATCCG
*
27052215 AAAT-GAAAGCTTTTGTGG
1 AAATGGAAA-CCTTTGTGG
27052233 CAATATATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
25 3 0.08
26 34 0.92
ACGTcount: A:0.27, C:0.10, G:0.30, T:0.33
Consensus pattern (26 bp):
AAATGGAAACCTTTGTGGGGTATCCG
Found at i:27052268 original size:27 final size:26
Alignment explanation
Indices: 27052187--27052268 Score: 69
Period size: 27 Copynumber: 3.1 Consensus size: 26
27052177 GTGGGGTATC
*
27052187 TGAAATGGAAGCCTTTGTGGTGTATC--
1 TGAAAT-GAAGCCTTTGTGGCG-ATCTA
* * * *
27052213 CGAAATGAAAGCTTTTGTGGCAATATA
1 TGAAATG-AAGCCTTTGTGGCGATCTA
27052240 TGAAATCGAAGCCTTTGTGGCGATCTA
1 TGAAAT-GAAGCCTTTGTGGCGATCTA
27052267 TG
1 TG
27052269 GGAAGGGAGG
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
25 3 0.07
26 16 0.37
27 23 0.53
28 1 0.02
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (26 bp):
TGAAATGAAGCCTTTGTGGCGATCTA
Found at i:27073785 original size:10 final size:10
Alignment explanation
Indices: 27073770--27073808 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
27073760 TGCTTTTGTA
27073770 CATGATATGC
1 CATGATATGC
27073780 CATGATATGC
1 CATGATATGC
27073790 ACATGATATGC
1 -CATGATATGC
27073801 CATGATAT
1 CATGATAT
27073809 ATTCACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (10 bp):
CATGATATGC
Found at i:27073794 original size:21 final size:21
Alignment explanation
Indices: 27073769--27073808 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
27073759 CTGCTTTTGT
27073769 ACATGATATGCCATGATATGC
1 ACATGATATGCCATGATATGC
27073790 ACATGATATGCCATGATAT
1 ACATGATATGCCATGATAT
27073809 ATTCACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (21 bp):
ACATGATATGCCATGATATGC
Found at i:27078400 original size:23 final size:22
Alignment explanation
Indices: 27078347--27078403 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 22
27078337 TGAGCTAAAC
27078347 CGGTAAGCTCTATCAAGTTGAA
1 CGGTAAGCTCTATCAAGTTGAA
* *
27078369 CAGTAAGCTCATAT-GAGTTGATA
1 CGGTAAGCTC-TATCAAGTTGA-A
27078392 CGGTAAGCTCTA
1 CGGTAAGCTCTA
27078404 ATGAGCTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (22 bp):
CGGTAAGCTCTATCAAGTTGAA
Found at i:27078407 original size:23 final size:22
Alignment explanation
Indices: 27078327--27078413 Score: 70
Period size: 23 Copynumber: 3.9 Consensus size: 22
27078317 TAATGAACAA
* * *
27078327 TAAGCTCTTATGAGCTAAACCGG
1 TAAGCTCTAATGAGTTGAA-CGG
* *
27078350 TAAGCTCT-ATCAAGTTGAACAG
1 TAAGCTCTAAT-GAGTTGAACGG
27078372 TAAGCTC-ATATGAGTTGATACGG
1 TAAGCTCTA-ATGAGTTGA-ACGG
*
27078395 TAAGCTCTAATGAGCTGAA
1 TAAGCTCTAATGAGTTGAA
27078414 AACAGTAAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
22 18 0.35
23 33 0.63
24 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (22 bp):
TAAGCTCTAATGAGTTGAACGG
Found at i:27084412 original size:16 final size:17
Alignment explanation
Indices: 27084391--27084423 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
27084381 TTCATATTCA
27084391 TGCAAAAAATT-ACATT
1 TGCAAAAAATTCACATT
*
27084407 TGCAAACAATTCACATT
1 TGCAAAAAATTCACATT
27084424 CACCATGCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.30
Consensus pattern (17 bp):
TGCAAAAAATTCACATT
Found at i:27085531 original size:43 final size:43
Alignment explanation
Indices: 27085473--27085616 Score: 166
Period size: 43 Copynumber: 3.4 Consensus size: 43
27085463 GTACCAATCC
** * *
27085473 ATATCCCTTATATGGTCTTACATGTAA-TTTCGTATCGATGCCA
1 ATATCCCAGATATGGTCTTACATG-AAGTCTCATATCGATGCCA
* * *
27085516 ATATCCCAGCTATGGTCTTACATAAAGTCTCATATCTATGCCA
1 ATATCCCAGATATGGTCTTACATGAAGTCTCATATCGATGCCA
* * * *
27085559 ATAGCCTAGTTATGGTCGTACATGAAGTCTCATATCGATGCC-
1 ATATCCCAGATATGGTCTTACATGAAGTCTCATATCGATGCCA
27085601 ATATCCCAGATATGGT
1 ATATCCCAGATATGGT
27085617 TTTAGACGTA
Statistics
Matches: 84, Mismatches: 16, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
42 15 0.18
43 69 0.82
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (43 bp):
ATATCCCAGATATGGTCTTACATGAAGTCTCATATCGATGCCA
Found at i:27087298 original size:6 final size:6
Alignment explanation
Indices: 27087277--27087364 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
27087267 AAGAAACAAT
* * *
27087277 ATCAGA A-CTAGA ATCAGG ATCAGA ATCAGA ATCA-A GTGACAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
27087326 ATCAGA ATCAGT ATCAGGTA AT-AGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
27087365 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 6 0.09
6 49 0.77
7 5 0.08
8 4 0.06
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:27087330 original size:31 final size:31
Alignment explanation
Indices: 27087286--27087364 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
27087276 TATCAGAACT
** *
27087286 AGAATCAGGATCAGAATCAGAATCAAGTGAC
1 AGAATCAAAATCAGAATCAGAATCAAGTAAC
* * *
27087317 AGAATCAAAATCAGAATCAGTATCAGGTAAT
1 AGAATCAAAATCAGAATCAGAATCAAGTAAC
27087348 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
27087365 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAAGTAAC
Found at i:27087531 original size:27 final size:26
Alignment explanation
Indices: 27087483--27087542 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
27087473 GCGAGGCTGC
*
27087483 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
27087510 CAGATATTGTGCCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
27087536 TAGATAT
1 CAGATAT
27087543 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:27087695 original size:98 final size:98
Alignment explanation
Indices: 27087467--27087730 Score: 336
Period size: 98 Copynumber: 2.7 Consensus size: 98
27087457 CACCACAGAA
27087467 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGCCTAGGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGCCTAGGCCACC
27087532 AGAATAGATATATATATGTGGCGAAGCCACCAG
66 AGAATAGATATATATATGTGGCGAAGCCACCAG
** ** * **** * * * *
27087565 GGTAAAACGAGAAAACATAAGAAAAT-AG-CGAAGTCACCAGATACAGATATTGTGCCTAGGCCA
1 ATTGCAGCGAGGCTGC--CAGATATTGTGACGAAGTCACCAGATACAGATATTGTGCCTAGGCCA
27087628 CCAGAATAGATATATATATGTGGCGAAGCCACCAG
64 CCAGAATAGATATATATATGTGGCGAAGCCACCAG
* * *
27087663 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCTGA-ACAGATATATGTGGCGAGGCCAC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATAT-TGTGCCTAGGCCAC
27087727 CAGA
65 CAGA
27087731 TTGCAGCGAG
Statistics
Matches: 132, Mismatches: 29, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
96 5 0.04
97 9 0.07
98 112 0.85
99 1 0.01
100 5 0.04
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.19
Consensus pattern (98 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGATACAGATATTGTGCCTAGGCCACC
AGAATAGATATATATATGTGGCGAAGCCACCAG
Found at i:27087997 original size:27 final size:27
Alignment explanation
Indices: 27087967--27088431 Score: 570
Period size: 27 Copynumber: 17.2 Consensus size: 27
27087957 AACACCCTAG
** * *
27087967 GGGTAAAATGGTAATTTTATAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
27087994 GGGTAAAACGGTAATTCTGTAAACCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
27088021 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
27088048 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * * *
27088075 AGGTAAAATAGTAATTCTGTTAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
** *
27088102 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
27088129 GGGTAAAACAGTAATTTTTGTAAATCGA
1 GGGTAAAACAGTAA-TTTTGTAAATCGA
* * *
27088157 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
27088184 GGGTAAAATAGTAATTCTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
27088211 GGGTAAAATAGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
**
27088238 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
27088265 GGGTAAAACGGTAATTTTGTAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
27088292 GGGTAGAACAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
27088319 GGGTAAAACAGTAATTCTATCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * *
27088346 GGGTAAAACGGTAATTCTGTCAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
27088373 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
27088400 GGGTAAAATAGTAATTTTGTAATTCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
27088427 GGGTA
1 GGGTA
27088432 CTTTGATAAT
Statistics
Matches: 389, Mismatches: 48, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
27 364 0.94
28 25 0.06
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.31
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:27088105 original size:81 final size:81
Alignment explanation
Indices: 27087967--27088431 Score: 633
Period size: 81 Copynumber: 5.7 Consensus size: 81
27087957 AACACCCTAG
** * ** * *
27087967 GGGTAAAATGGTAATTTTATAAATTGAGGGTAAAACGGTAATTCTGTAAACCGAGGGTAAAACAG
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGG
* *
27088032 TAATTTTGTAAATCGA
66 TAATTCTGTAAATTGA
* * * * *
27088048 GGGTAAAACAGTAATTTTGTAAATCGAAGGTAAAATAGTAATTCTGTTAATCAAGGGTAAAATGG
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGG
*
27088113 TAATTCTGTAAATCGA
66 TAATTCTGTAAATTGA
* * **
27088129 GGGTAAAACAGTAATTTTTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATA
1 GGGTAAAACAGTAA-TTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACG
27088194 GTAATTCTGTAAATTGA
65 GTAATTCTGTAAATTGA
* * *
27088211 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACGG
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGG
*
27088276 TAATTTTGTAAATTGA
66 TAATTCTGTAAATTGA
* * * * *
27088292 GGGTAGAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATCAATCGAGGGTAAAACGG
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGG
*
27088357 TAATTCTGTCAATTGA
66 TAATTCTGTAAATTGA
* * *
27088373 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAATTCGAGGGTA
1 GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTA
27088432 CTTTGATAAT
Statistics
Matches: 338, Mismatches: 45, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
81 264 0.78
82 74 0.22
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.31
Consensus pattern (81 bp):
GGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACGG
TAATTCTGTAAATTGA
Found at i:27088441 original size:27 final size:26
Alignment explanation
Indices: 27088030--27088583 Score: 193
Period size: 27 Copynumber: 20.5 Consensus size: 26
27088020 AGGGTAAAAC
***
27088030 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* **
27088057 AGTAATTTTGTAAATCGAAGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* * * **
27088084 AGTAATTCTGTTAATCAAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* * ***
27088111 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGT-ATTT
**
27088138 AGTAATTTTTGTAAATCGAGGGTAAAAT
1 AGTAA-TTTTGTAAATCGAGGGT-ATTT
* * **
27088166 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* * **
27088193 AGTAATTCTGTAAATTGAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* **
27088220 AGTAATTTTATAAATCGAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* **
27088247 GGTAATTTTGTAAATCGAGGGTA-AA
1 AGTAATTTTGTAAATCGAGGGTATTT
* ***
27088272 ACGGTAATTTTGTAAATTGAGGGTAGAAC
1 A--GTAATTTTGTAAATCGAGGGTA-TTT
* * ***
27088301 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTTTGTAAATCGAGGGT-ATTT
* * * **
27088328 AGTAATTCTATCAATCGAGGGTA-AA
1 AGTAATTTTGTAAATCGAGGGTATTT
* * * ***
27088353 ACGGTAATTCTGTCAATTGAGGGTAAAAC
1 A--GTAATTTTGTAAATCGAGGGT-ATTT
**
27088382 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTTTGTAAATCGAGGGT-ATTT
*
27088409 AGTAATTTTGTAATTCGAGGGTACTTT
1 AGTAATTTTGTAAATCGAGGGTA-TTT
** *
27088436 -GATAATTTTACAAGTCGAGGGTATTTT
1 AG-TAATTTTGTAAATCGAGGGTA-TTT
*
27088463 AGTAATTTTGCAAA-CTGAGGGTATTT
1 AGTAATTTTGTAAATC-GAGGGTATTT
* ** *
27088489 CGGTAATTTTACAAATCGAGGATATTT
1 -AGTAATTTTGTAAATCGAGGGTATTT
* * * *
27088516 GGGTAATTTTATAAACCGGGGGTACTTT
1 -AGTAATTTTGTAAATCGAGGGTA-TTT
* * *
27088544 GGTAA-TTT-TATATCTGGGGGTATTT
1 AGTAATTTTGTAAATC-GAGGGTATTT
*
27088569 CAGTAATTTGGTAAA
1 -AGTAATTTTGTAAA
27088584 CTAAAGTATT
Statistics
Matches: 446, Mismatches: 60, Indels: 41
0.82 0.11 0.07
Matches are distributed among these distances:
25 10 0.02
26 22 0.05
27 375 0.84
28 35 0.08
29 4 0.01
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.34
Consensus pattern (26 bp):
AGTAATTTTGTAAATCGAGGGTATTT
Found at i:27088454 original size:54 final size:54
Alignment explanation
Indices: 27087967--27088509 Score: 472
Period size: 54 Copynumber: 10.0 Consensus size: 54
27087957 AACACCCTAG
* * * * * * *
27087967 GGGTAAAATGGTAATTTTATAAATTGAGGGTAAAACG-GTAATTCTGTAAACCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGT-AAATGAGTAATTTTATAAATCGA
* ** *
27088021 GGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAATGAGTAATTTTATAAATCGA
* * * * * *
27088075 AGGTAAAATAGTAATTCTGTTAATCAAGGGTAAAATG-GTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGT-AAATGAGTAATTTTATAAATCGA
* *
27088129 GGGTAAAACAGTAATTTTTGTAAATCGAGGGTAAAAT-AGTAATTCTATAAATCGA
1 GGGTAAAATAGTAA-TTTTGTAAATCGAGGGT-AAATGAGTAATTTTATAAATCGA
* *
27088184 GGGTAAAATAGTAATTCTGTAAATTGAGGGTAAAAT-AGTAATTTTATAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGT-AAATGAGTAATTTTATAAATCGA
* * * *
27088238 GGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAACG-GTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGT-AAATGAGTAATTTTATAAATCGA
* * * * ** * *
27088292 GGGTAGAACAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATCAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAATGAGTAATTTTATAAATCGA
** * * * ** *
27088346 GGGTAAAACGGTAATTCTGTCAATTGAGGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAATGAGTAATTTTATAAATCGA
* ** * *
27088400 GGGTAAAATAGTAATTTTGTAATTCGAGGGTACTTTGA-TAATTTTACAAGTCGA
1 GGGTAAAATAGTAATTTTGTAAATCGAGGGTA-AATGAGTAATTTTATAAATCGA
*** * ** *
27088454 GGGTATTTTAGTAATTTTGCAAA-CTGAGGGTATTTCG-GTAATTTTACAAATCGA
1 GGGTAAAATAGTAATTTTGTAAATC-GAGGGTAAAT-GAGTAATTTTATAAATCGA
27088508 GG
1 GG
27088510 ATATTTGGGT
Statistics
Matches: 409, Mismatches: 70, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
53 10 0.02
54 347 0.85
55 52 0.13
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (54 bp):
GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAATGAGTAATTTTATAAATCGA
Found at i:27089386 original size:71 final size:71
Alignment explanation
Indices: 27089302--27089444 Score: 277
Period size: 71 Copynumber: 2.0 Consensus size: 71
27089292 TGAACCCAGG
27089302 ACTTCTCCAACACTTCTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACGAAATTTACATG
1 ACTTCTCCAACACTTCTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACGAAATTTACATG
27089367 CACAAC
66 CACAAC
*
27089373 ACTTCTCCAACACTTGTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACGAAATTTACATG
1 ACTTCTCCAACACTTCTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACGAAATTTACATG
27089438 CACAAC
66 CACAAC
27089444 A
1 A
27089445 AAATATTATA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.38, C:0.31, G:0.06, T:0.24
Consensus pattern (71 bp):
ACTTCTCCAACACTTCTCAGCACACTTAACCACTAAAACAAGCCTTCATTAACGAAATTTACATG
CACAAC
Found at i:27091542 original size:49 final size:50
Alignment explanation
Indices: 27091408--27091552 Score: 152
Period size: 49 Copynumber: 2.9 Consensus size: 50
27091398 ATTAGGGTTT
* * *
27091408 AAGGATACCATGTAAGACCAT-ACCAAGGCATGGCATTGGTGAGTTCATAAGG
1 AAGGATACCATGTAAGACCATGA-CAAGACATGGCAATGGTAAGTTCA-AA-G
**
27091460 CAAGGATACCATGTAAGACCATGTTAAGACATGGCAATGGTAAGTTTC-AA-
1 -AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAG-TTCAAAG
* * *
27091510 AAGGATACCACGTAAGACCATGACAAGTCATGGCGATGGTAAG
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAG
27091553 GTACCCATGT
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
49 38 0.47
52 2 0.03
53 37 0.46
54 3 0.04
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.21
Consensus pattern (50 bp):
AAGGATACCATGTAAGACCATGACAAGACATGGCAATGGTAAGTTCAAAG
Found at i:27096917 original size:47 final size:47
Alignment explanation
Indices: 27096862--27097177 Score: 587
Period size: 47 Copynumber: 6.7 Consensus size: 47
27096852 TTTAGGATTT
** *
27096862 TATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
27096909 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
27096956 TTTGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
27097003 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
27097050 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
27097097 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
27097144 TATGTGATGAATGTGAACATGCATATATGTGATA
1 TATGTGATGAATGTGAACATGCATATATGTGATA
27097178 GTAAAGCCGA
Statistics
Matches: 262, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 262 1.00
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.29
Consensus pattern (47 bp):
TATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:27097463 original size:37 final size:37
Alignment explanation
Indices: 27097355--27097463 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
27097345 GGAAATATAT
* *
27097355 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
27097392 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
27097429 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
27097464 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:27100194 original size:18 final size:18
Alignment explanation
Indices: 27100171--27100207 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
27100161 TCTCACGAAA
27100171 ACTTTAGCATCTCATAAT
1 ACTTTAGCATCTCATAAT
27100189 ACTTTAGCATCTCATAAT
1 ACTTTAGCATCTCATAAT
27100207 A
1 A
27100208 TACTGTTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.38
Consensus pattern (18 bp):
ACTTTAGCATCTCATAAT
Found at i:27101186 original size:39 final size:40
Alignment explanation
Indices: 27101069--27101250 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 40
27101059 GCTACTCGTT
* * *
27101069 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
27101109 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
27101149 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
27101188 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
27101229 CAAA-GCCTTCAGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
27101251 TGACATCATT
Statistics
Matches: 122, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 74 0.61
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:27101213 original size:79 final size:80
Alignment explanation
Indices: 27101069--27101250 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 80
27101059 GCTACTCGTT
* *
27101069 CAAATGCCTTCGGGTCATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
* *
27101134 ATTTAGTAAC-TCGCA
65 ATATAGTAACTTAGCA
* * **
27101149 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCG
* *
27101212 GATATGGTCACTTAGCA
64 GATATAGTAACTTAGCA
*
27101229 CAAA-GCCTTCAGGACTTAGCCC
1 CAAATGCCTTC-GGGCTTAGCCC
27101251 TGACATCATT
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.05
79 51 0.59
80 32 0.37
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCA
Found at i:27106052 original size:20 final size:21
Alignment explanation
Indices: 27106024--27106075 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
27106014 ATTCATTTCT
27106024 ATTCGTATAAACT-GTAATTC
1 ATTCGTATAAACTAGTAATTC
* *
27106044 ATTCATAT-AACTAGTAGTTC
1 ATTCGTATAAACTAGTAATTC
*
27106064 ATCCGTATAAAC
1 ATTCGTATAAAC
27106076 AATAGTTCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 4 0.15
20 19 0.73
21 3 0.12
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (21 bp):
ATTCGTATAAACTAGTAATTC
Found at i:27106071 original size:40 final size:39
Alignment explanation
Indices: 27106027--27106132 Score: 97
Period size: 40 Copynumber: 2.7 Consensus size: 39
27106017 CATTTCTATT
* *
27106027 CGTATAAACTGTAATTCATTCATATAACTAGTAGTTCATC
1 CGTATAAACTGTAATTCATTCATATAAC-AGTAATTCAAC
** *
27106067 CGTATAAACAATAGTTCA-TCAGTAATAACAGTAATTCAAC
1 CGTATAAACTGTAATTCATTCA-T-ATAACAGTAATTCAAC
* * * *
27106107 TGTATTAACTGTTATTCATCCATATA
1 CGTATAAACTGTAATTCATTCATATA
27106133 TACACATATC
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
39 6 0.12
40 38 0.75
41 7 0.14
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (39 bp):
CGTATAAACTGTAATTCATTCATATAACAGTAATTCAAC
Found at i:27106104 original size:20 final size:19
Alignment explanation
Indices: 27106037--27106104 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 19
27106027 CGTATAAACT
27106037 GTAATTCATTCA-TATAACTA
1 GTAATTCA-TCAGTATAAC-A
* *
27106057 GTAGTTCATCCGTATAAACA
1 GTAATTCATCAGTAT-AACA
* *
27106077 ATAGTTCATCAGTAATAACA
1 GTAATTCATCAGT-ATAACA
27106097 GTAATTCA
1 GTAATTCA
27106105 ACTGTATTAA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
19 2 0.05
20 32 0.82
21 5 0.13
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (19 bp):
GTAATTCATCAGTATAACA
Found at i:27106311 original size:26 final size:24
Alignment explanation
Indices: 27106282--27106338 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
27106272 GCCATGATCG
27106282 GTAAGCTCCTCTTGAGCTAATGAATA
1 GTAAGCTCCTCTTGAGCTAA--AATA
* *
27106308 GTAAGCT-CTTTTGAGCTAAAGTA
1 GTAAGCTCCTCTTGAGCTAAAATA
27106331 GTAAGCTC
1 GTAAGCTC
27106339 TATCAAGCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 10 0.36
25 11 0.39
26 7 0.25
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (24 bp):
GTAAGCTCCTCTTGAGCTAAAATA
Found at i:27106332 original size:23 final size:24
Alignment explanation
Indices: 27106282--27106339 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 24
27106272 GCCATGATCG
27106282 GTAAGCTCCTCTTGAGCTAATGAATA
1 GTAAGCT-CTCTTGAGCTAA-GAATA
* *
27106308 GTAAGCTCTTTTGAGCTAA-AGTA
1 GTAAGCTCTCTTGAGCTAAGAATA
27106331 GTAAGCTCT
1 GTAAGCTCT
27106340 ATCAAGCTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 12 0.40
25 11 0.37
26 7 0.23
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (24 bp):
GTAAGCTCTCTTGAGCTAAGAATA
Found at i:27106347 original size:23 final size:22
Alignment explanation
Indices: 27106304--27106360 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
27106294 TGAGCTAATG
* **
27106304 AATAGTAAGCTCTTTTGAGCTA
1 AATAGTAAGCTCTATCAAGCTA
*
27106326 AAGTAGTAAGCTCTATCAAGCTG
1 AA-TAGTAAGCTCTATCAAGCTA
*
27106349 AACAGTAAGCTC
1 AATAGTAAGCTC
27106361 AGACAAGCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 11 0.38
23 18 0.62
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (22 bp):
AATAGTAAGCTCTATCAAGCTA
Found at i:27109072 original size:46 final size:46
Alignment explanation
Indices: 27108968--27109094 Score: 166
Period size: 46 Copynumber: 2.7 Consensus size: 46
27108958 TGAGGCATCT
* * *
27108968 GAACTCGTTGAGTTGCATTTCGAGTTCACCTATGGATGCAAGCATCC
1 GAACTCGTTGAGTTGCATTCCGAGTTCA-TTATGGATGCAAGCACCC
* **
27109015 GAACTCATTGAGTTGTGTTCCGAGTTCATTATGGATGCGAA-CACCC
1 GAACTCGTTGAGTTGCATTCCGAGTTCATTATGGATGC-AAGCACCC
*
27109061 GAGCTCGTTGAGTTGCATTCCGAGTTCATTATGG
1 GAACTCGTTGAGTTGCATTCCGAGTTCATTATGG
27109095 GTGAGATTAT
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
46 43 0.62
47 26 0.38
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGCATTCCGAGTTCATTATGGATGCAAGCACCC
Found at i:27114609 original size:20 final size:20
Alignment explanation
Indices: 27114586--27114631 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
27114576 TAAACTGTAA
* *
27114586 TTCATTCATATAACCAATAG
1 TTCATCCATATAAACAATAG
*
27114606 TTCATCCGTATAAACAATAG
1 TTCATCCATATAAACAATAG
27114626 TTCATC
1 TTCATC
27114632 AGTAATAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.35
Consensus pattern (20 bp):
TTCATCCATATAAACAATAG
Found at i:27114641 original size:20 final size:19
Alignment explanation
Indices: 27114594--27114641 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
27114584 AATTCATTCA
*
27114594 TATAACCAATAGTTCATCCG
1 TATAA-CAATAGTTCATCAG
27114614 TATAAACAATAGTTCATCAG
1 TAT-AACAATAGTTCATCAG
27114634 TAATAACA
1 T-ATAACA
27114642 GTAATTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (19 bp):
TATAACAATAGTTCATCAG
Found at i:27114905 original size:23 final size:22
Alignment explanation
Indices: 27114847--27114914 Score: 100
Period size: 22 Copynumber: 3.0 Consensus size: 22
27114837 TTTGAGCTGA
27114847 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTATTGAGC
27114869 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTATTGAGC
* * *
27114891 TGAACCGGTAAGCTCCAATGAGC
1 TGAA-CAGTAAGCTCTATTGAGC
27114914 T
1 T
27114915 AAAAATAGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
22 26 0.62
23 16 0.38
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.25
Consensus pattern (22 bp):
TGAACAGTAAGCTCTATTGAGC
Found at i:27116755 original size:43 final size:42
Alignment explanation
Indices: 27116690--27116802 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 42
27116680 AGCTCGTACA
* * ** *
27116690 ATGCCATATCCTAGATATGGTCTTACACGTTATC-ACATATCG
1 ATGCCATGTCCTAGACATGGTCTTACACGAAATCGA-ATAACG
* *
27116732 ATGCCACTGTCCTAGACAGGGTCTTACACGAAATCGATTAACG
1 ATGCCA-TGTCCTAGACATGGTCTTACACGAAATCGAATAACG
*
27116775 ATGCCAATGTCCCAGACATGGTCTTACA
1 ATGCC-ATGTCCTAGACATGGTCTTACA
27116803 TGTAATCAGT
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 6 0.10
43 51 0.86
44 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCTAGACATGGTCTTACACGAAATCGAATAACG
Found at i:27116827 original size:28 final size:28
Alignment explanation
Indices: 27116783--27116838 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
27116773 CGATGCCAAT
*
27116783 GTCCCAGACATGGTCTTACATGTAATCA
1 GTCCCAGACATGCTCTTACATGTAATCA
*
27116811 GTCCCATACATGCTCTTACATGTAATCA
1 GTCCCAGACATGCTCTTACATGTAATCA
27116839 CATCTCGGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
GTCCCAGACATGCTCTTACATGTAATCA
Found at i:27119723 original size:8 final size:8
Alignment explanation
Indices: 27119710--27119741 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
27119700 CTAGATCGGC
27119710 AAAAGCCG
1 AAAAGCCG
27119718 AAAAGCCG
1 AAAAGCCG
*
27119726 AAATGCCG
1 AAAAGCCG
27119734 AAAAGCCG
1 AAAAGCCG
27119742 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:27120020 original size:28 final size:28
Alignment explanation
Indices: 27119988--27120052 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
27119978 ATTTACTAGA
*
27119988 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
27120016 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
27120044 ATACCCCTA
1 ATACCCCTA
27120053 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:27120216 original size:27 final size:27
Alignment explanation
Indices: 27120158--27120247 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
27120148 AGGAAGCGTC
27120158 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
27120186 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
27120213 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
27120242 CTGGTG
1 CTGGTG
27120248 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:27120266 original size:55 final size:56
Alignment explanation
Indices: 27120158--27120272 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
27120148 AGGAAGCGTC
* *
27120158 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
27120213 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
27120269 CTGG
1 CTGG
27120273 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:27121365 original size:11 final size:10
Alignment explanation
Indices: 27121337--27121370 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
27121327 AGCCTGTAAG
27121337 TATTCTGAAT
1 TATTCTGAAT
*
27121347 TTTTCTGAAT
1 TATTCTGAAT
27121357 ATATTCTGAAT
1 -TATTCTGAAT
27121368 TAT
1 TAT
27121371 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:27136721 original size:28 final size:28
Alignment explanation
Indices: 27136689--27136753 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
27136679 ATTTACTAGA
*
27136689 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
27136717 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
27136745 ATACCCCTA
1 ATACCCCTA
27136754 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:27136917 original size:27 final size:27
Alignment explanation
Indices: 27136859--27136948 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
27136849 AGGAAGCGTC
27136859 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
27136887 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
27136914 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
27136943 CTGGTG
1 CTGGTG
27136949 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:27136967 original size:55 final size:56
Alignment explanation
Indices: 27136859--27136973 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
27136849 AGGAAGCGTC
* *
27136859 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
27136914 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
27136970 CTGG
1 CTGG
27136974 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:27141435 original size:17 final size:18
Alignment explanation
Indices: 27141408--27141452 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
27141398 GATTGTAAAT
27141408 TTTTATCAAAAAAAGAATA
1 TTTT-TCAAAAAAAGAATA
**
27141427 -TTTTCAAAATTAGAATA
1 TTTTTCAAAAAAAGAATA
27141444 TTTTTCAAA
1 TTTTTCAAA
27141453 CCTTTGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (18 bp):
TTTTTCAAAAAAAGAATA
Found at i:27146250 original size:29 final size:29
Alignment explanation
Indices: 27146217--27146277 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
27146207 TTTAAGCATG
27146217 ATTTGGATGTTGATTTACTAGTCGTTTTT
1 ATTTGGATGTTGATTTACTAGTCGTTTTT
27146246 ATTTGGATGTTGATTTACTAGTCGTTTTT
1 ATTTGGATGTTGATTTACTAGTCGTTTTT
27146275 ATT
1 ATT
27146278 AACATTCACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.18, C:0.07, G:0.20, T:0.56
Consensus pattern (29 bp):
ATTTGGATGTTGATTTACTAGTCGTTTTT
Found at i:27149681 original size:29 final size:29
Alignment explanation
Indices: 27149639--27149738 Score: 146
Period size: 29 Copynumber: 3.4 Consensus size: 29
27149629 GCGAGCGCAT
* * *
27149639 TTGGTGAATACTTGATTTGGGAACTTTAC
1 TTGGTGGATACTTGACTTGCGAACTTTAC
* * *
27149668 TTGGCGGATACTTGACTTGCAAAGTTTAC
1 TTGGTGGATACTTGACTTGCGAACTTTAC
27149697 TTGGTGGATACTTGACTTGCGAACTTTAC
1 TTGGTGGATACTTGACTTGCGAACTTTAC
27149726 TTGGTGGATACTT
1 TTGGTGGATACTT
27149739 TCCCTCCTCC
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.22, C:0.14, G:0.25, T:0.39
Consensus pattern (29 bp):
TTGGTGGATACTTGACTTGCGAACTTTAC
Found at i:27149685 original size:16 final size:16
Alignment explanation
Indices: 27149661--27149739 Score: 62
Period size: 16 Copynumber: 5.3 Consensus size: 16
27149651 TGATTTGGGA
27149661 ACTTTACTTGGCGGAT
1 ACTTTACTTGGCGGAT
* *
27149677 ACTTGACTT-GC--AA
1 ACTTTACTTGGCGGAT
* *
27149690 AGTTTACTTGGTGGAT
1 ACTTTACTTGGCGGAT
*
27149706 ACTTGACTT-GC-GA-
1 ACTTTACTTGGCGGAT
*
27149719 ACTTTACTTGGTGGAT
1 ACTTTACTTGGCGGAT
27149735 ACTTT
1 ACTTT
27149740 CCCTCCTCCC
Statistics
Matches: 46, Mismatches: 11, Indels: 12
0.67 0.16 0.17
Matches are distributed among these distances:
13 16 0.35
14 4 0.09
15 5 0.11
16 21 0.46
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.39
Consensus pattern (16 bp):
ACTTTACTTGGCGGAT
Found at i:27159893 original size:27 final size:27
Alignment explanation
Indices: 27159874--27159999 Score: 173
Period size: 27 Copynumber: 4.7 Consensus size: 27
27159864 TCAGAGTTTT
*
27159874 CCACAAAAGGTTTTCTTTCAGAGTTCA
1 CCACAAAAGGTTTTCTTTCAAAGTTCA
* *
27159901 CCGCAAAGGGTTTTCTTTCAAAGTTCA
1 CCACAAAAGGTTTTCTTTCAAAGTTCA
* *
27159928 CCA-TAAAGGCTTTCTTTCAAAGTTCA
1 CCACAAAAGGTTTTCTTTCAAAGTTCA
**
27159954 CCACAAAAGGTTTTCTTTCAAAGTTTG
1 CCACAAAAGGTTTTCTTTCAAAGTTCA
*
27159981 CCACAAAAGCTTTTCTTTC
1 CCACAAAAGGTTTTCTTTC
27160000 CTAATTTGTT
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 23 0.27
27 63 0.73
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (27 bp):
CCACAAAAGGTTTTCTTTCAAAGTTCA
Found at i:27159993 original size:53 final size:53
Alignment explanation
Indices: 27159863--27159999 Score: 166
Period size: 53 Copynumber: 2.5 Consensus size: 53
27159853 AGACAGTCCA
* * * * * *
27159863 TTCAGAGTTTTCCACAAAAGGTTTTCTTTCAGAGTTCACCGCAAAGGGTTTTCT
1 TTCAAAGTTTACCACAAAA-GCTTTCTTTCAAAGTTCACCACAAAAGGTTTTCT
* * *
27159917 TTCAAAGTTCACCATAAAGGCTTTCTTTCAAAGTTCACCACAAAAGGTTTTCT
1 TTCAAAGTTTACCACAAAAGCTTTCTTTCAAAGTTCACCACAAAAGGTTTTCT
*
27159970 TTCAAAGTTTGCCACAAAAGCTTTTCTTTC
1 TTCAAAGTTTACCACAAAAGC-TTTCTTTC
27160000 CTAATTTGTT
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
53 47 0.68
54 22 0.32
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (53 bp):
TTCAAAGTTTACCACAAAAGCTTTCTTTCAAAGTTCACCACAAAAGGTTTTCT
Found at i:27162960 original size:17 final size:18
Alignment explanation
Indices: 27162938--27162973 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
27162928 CACATTAAAG
27162938 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
27162955 TGTTTTCATTGAAAACCT
1 TGTTTTCAGTGAAAACCT
27162973 T
1 T
27162974 TCTTTAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:27164110 original size:28 final size:28
Alignment explanation
Indices: 27164078--27164134 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
27164068 GCCCAAATAA
27164078 GTCTACAT-ACATGCATATGGCCCACTAG
1 GTCTA-ATCACATGCATATGGCCCACTAG
* * *
27164106 GTCTAATCTCATTCATATGGCCCATTAG
1 GTCTAATCACATGCATATGGCCCACTAG
27164134 G
1 G
27164135 CCCAAATCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.08
28 23 0.92
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (28 bp):
GTCTAATCACATGCATATGGCCCACTAG
Found at i:27164153 original size:29 final size:29
Alignment explanation
Indices: 27164086--27164210 Score: 117
Period size: 29 Copynumber: 4.3 Consensus size: 29
27164076 AAGTCTACAT
* * * *
27164086 ACATGCATATGGCCCACTAGG-TCTAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
27164114 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * * *
27164143 ATATTCGTATGGCCTATTAGGCCCAAATT
1 ACATTCATATGGCCCATTAGGCCCAAATC
** * *
27164172 ACATTCATACAGCCCGTTAGGCCCAAACC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
27164201 AAATTCATAT
1 ACATTCATAT
27164211 ACATGCTTTC
Statistics
Matches: 76, Mismatches: 20, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
28 18 0.24
29 58 0.76
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:27171781 original size:16 final size:16
Alignment explanation
Indices: 27171757--27171788 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
27171747 GTTAGGTAGC
*
27171757 TAATTAATTTTTTGAA
1 TAATGAATTTTTTGAA
27171773 TAATGAATTTTTTGAA
1 TAATGAATTTTTTGAA
27171789 ATTAGAAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (16 bp):
TAATGAATTTTTTGAA
Found at i:27172030 original size:3 final size:3
Alignment explanation
Indices: 27171967--27172019 Score: 65
Period size: 3 Copynumber: 18.0 Consensus size: 3
27171957 AAAGTAACTT
* *
27171967 TAA TAA TAA TGA TGA TAA TAA TAA TAA TAA TAA TAA TAA -AGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
27172012 TAA -AA TAA
1 TAA TAA TAA
27172020 AAACATAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 3 0.07
3 41 0.91
4 1 0.02
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:27179688 original size:24 final size:23
Alignment explanation
Indices: 27179661--27179738 Score: 102
Period size: 24 Copynumber: 3.3 Consensus size: 23
27179651 AAGGCTGTCA
27179661 GGAGAAGATTTGAGAGCTGATAAG
1 GGAGAAGATTT-AGAGCTGATAAG
*
27179685 GGAGAGGATTTAGAGGCTGATAAG
1 GGAGAAGATTTAGA-GCTGATAAG
* *
27179709 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTA-GAGCTGATAAG
27179733 GGAGAA
1 GGAGAA
27179739 CGGTGTTGGC
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
23 3 0.06
24 44 0.90
25 2 0.04
ACGTcount: A:0.35, C:0.04, G:0.41, T:0.21
Consensus pattern (23 bp):
GGAGAAGATTTAGAGCTGATAAG
Found at i:27181211 original size:27 final size:27
Alignment explanation
Indices: 27181173--27181280 Score: 123
Period size: 27 Copynumber: 4.0 Consensus size: 27
27181163 AAGCGTCCTA
* *
27181173 GTGGCTATGCCACATTTATCTAATT-TG
1 GTGGCTCTGCCACATTTATCT-GTTCTG
27181200 GTGGCTCTGCCACATATT-TCTGTTCTG
1 GTGGCTCTGCCACAT-TTATCTGTTCTG
* *
27181227 GTGGCTCTACCACAATTATCTGTTCTG
1 GTGGCTCTGCCACATTTATCTGTTCTG
* *
27181254 GTGACTCTGTCACA-TTATCTGTTCTG
1 GTGGCTCTGCCACATTTATCTGTTCTG
27181280 G
1 G
27181281 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.24
27 52 0.73
28 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (27 bp):
GTGGCTCTGCCACATTTATCTGTTCTG
Found at i:27184402 original size:14 final size:14
Alignment explanation
Indices: 27184383--27184415 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
27184373 TTTATTGATA
27184383 TTGTTTATAAGATG
1 TTGTTTATAAGATG
27184397 TTGTTTATAAGATG
1 TTGTTTATAAGATG
27184411 TTGTT
1 TTGTT
27184416 AACTTAGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (14 bp):
TTGTTTATAAGATG
Found at i:27190566 original size:23 final size:25
Alignment explanation
Indices: 27190540--27190585 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
27190530 ATTGGGATTT
27190540 TAAAA-AGGTTTTTAT-TTTCTTTG
1 TAAAATAGGTTTTTATATTTCTTTG
* *
27190563 TAAAATAGTTTTTTTTATTTCTT
1 TAAAATAGGTTTTTATATTTCTT
27190586 GTTCGAACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 8 0.42
25 6 0.32
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.61
Consensus pattern (25 bp):
TAAAATAGGTTTTTATATTTCTTTG
Found at i:27194405 original size:27 final size:27
Alignment explanation
Indices: 27194365--27194476 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
27194355 AGGAAGCGTC
*
27194365 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
27194392 CTGGTGGCTCTGCCACATATT-TCT-ATT
1 CTGGTGGCTCTGCCACA-ATTATCTGA-T
*
27194419 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
27194447 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
27194473 CTGG
1 CTGG
27194477 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 5, Indels: 11
0.82 0.05 0.12
Matches are distributed among these distances:
26 9 0.12
27 47 0.63
28 18 0.24
29 1 0.01
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:27194475 original size:54 final size:54
Alignment explanation
Indices: 27194365--27194476 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
27194355 AGGAAGCGTC
* *
27194365 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * * *
27194419 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
27194473 CTGG
1 CTGG
27194477 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:27198830 original size:46 final size:46
Alignment explanation
Indices: 27198777--27198905 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
27198767 TATTTAGGCA
*
27198777 TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
27198823 TTCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
** *
27198869 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
27198906 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.32
Consensus pattern (46 bp):
TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:27201828 original size:15 final size:15
Alignment explanation
Indices: 27201805--27201882 Score: 75
Period size: 15 Copynumber: 5.2 Consensus size: 15
27201795 CATAGTATCA
*
27201805 TATCTTGGGTTTCTT
1 TATCCTGGGTTTCTT
*
27201820 TATCCTGGGTCTCTT
1 TATCCTGGGTTTCTT
* *
27201835 TATTCTGGATTTCTT
1 TATCCTGGGTTTCTT
* *
27201850 TATTCTGGGTTTCTC
1 TATCCTGGGTTTCTT
* * *
27201865 TATCTTAGATTTCTT
1 TATCCTGGGTTTCTT
27201880 TAT
1 TAT
27201883 TCGGTTTTCT
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 51 1.00
ACGTcount: A:0.12, C:0.17, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCCTGGGTTTCTT
Found at i:27201883 original size:30 final size:30
Alignment explanation
Indices: 27201805--27201892 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
27201795 CATAGTATCA
* * * *
27201805 TATCTTGGGTTTCTTTATCCTGGGTCTCTT
1 TATCTTGGATTTCTTTATTCTGGGTTTCTC
27201835 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGGTTTCTC
* *
27201865 TATCTTAGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGGTTTCT
27201893 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGTTTCTC
Found at i:27203160 original size:15 final size:15
Alignment explanation
Indices: 27203140--27203168 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
27203130 CATAAAGTGC
27203140 TTAAATTGAAATTAT
1 TTAAATTGAAATTAT
27203155 TTAAATTGAAATTA
1 TTAAATTGAAATTA
27203169 GGGACTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (15 bp):
TTAAATTGAAATTAT
Found at i:27204347 original size:46 final size:46
Alignment explanation
Indices: 27204294--27204422 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
27204284 TATTTAGGCA
*
27204294 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
27204340 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
27204386 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
27204423 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:27207513 original size:40 final size:40
Alignment explanation
Indices: 27207458--27207681 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
27207448 TATTCGGATG
27207458 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
27207498 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
27207541 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
27207581 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * ** *
27207621 TTATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
27207661 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
27207682 ATACTTGGGT
Statistics
Matches: 162, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 13 0.08
40 111 0.69
41 1 0.01
43 37 0.23
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:27207601 original size:83 final size:80
Alignment explanation
Indices: 27207462--27207681 Score: 286
Period size: 83 Copynumber: 2.7 Consensus size: 80
27207452 CGGATGATAT
* * **
27207462 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
27207527 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
27207545 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
* *
27207610 TGCTAGTGACTTTAT
66 TGCTAGTGACTATAC
* *
27207625 CCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGACTATATCCGGGCTAAGTCCCGAAG
27207682 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 8, Indels: 10
0.88 0.06 0.07
Matches are distributed among these distances:
79 17 0.13
80 43 0.34
81 2 0.02
83 64 0.51
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:27211652 original size:22 final size:22
Alignment explanation
Indices: 27211613--27211655 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
27211603 ATCACTCTTC
* *
27211613 CTCTCCTTTTATTTTTCTTTTT
1 CTCTCCATTTATTATTCTTTTT
*
27211635 CTCTCCATTTGTTATTCTTTT
1 CTCTCCATTTATTATTCTTTT
27211656 CTTCTTCTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.23, G:0.02, T:0.67
Consensus pattern (22 bp):
CTCTCCATTTATTATTCTTTTT
Found at i:27212905 original size:27 final size:26
Alignment explanation
Indices: 27212865--27212952 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 26
27212855 AGGAAGCATC
*
27212865 CTGGTGGCTATGCCACAATTCTCTGAT
1 CTGGTGGCTCTGCCACAATT-TCTGAT
*
27212892 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACA-ATTTCTGAT
*
27212919 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATT-TCTG-AT
27212947 CTGGTG
1 CTGGTG
27212953 ACTCAGTCAG
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 3 0.06
27 41 0.76
28 10 0.19
ACGTcount: A:0.14, C:0.25, G:0.25, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATTTCTGAT
Found at i:27212965 original size:27 final size:27
Alignment explanation
Indices: 27212876--27212976 Score: 89
Period size: 27 Copynumber: 3.7 Consensus size: 27
27212866 TGGTGGCTAT
* * * * *
27212876 GCCACAATTCTCTGATCTGGTGGCTCT
1 GCCACGATTATCTGTTCTGGTGACTCA
* * *
27212903 GCCAC-ATATTTCTGTTCTGGTGGCTCT
1 GCCACGAT-TATCTGTTCTGGTGACTCA
27212930 GCCACGATTATCTGTATCTGGTGACTCA
1 GCCACGATTATCTGT-TCTGGTGACTCA
*
27212958 GTCA-GATTATCTGTTCTGG
1 GCCACGATTATCTGTTCTGG
27212977 CAGCCATGCT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.11
27 43 0.66
28 15 0.23
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.37
Consensus pattern (27 bp):
GCCACGATTATCTGTTCTGGTGACTCA
Found at i:27212971 original size:54 final size:54
Alignment explanation
Indices: 27212865--27212976 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
27212855 AGGAAGCATC
* * * *
27212865 CTGGTGGCTATGCCACAATTCTCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCAGCCACATATATCTGTT
* * * *
27212919 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCAGTCAGAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCAGCCACATATATCTGTT
27212973 CTGG
1 CTGG
27212977 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 33 0.67
55 16 0.33
ACGTcount: A:0.15, C:0.24, G:0.24, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCAGCCACATATATCTGTT
Found at i:27218086 original size:31 final size:30
Alignment explanation
Indices: 27218012--27218095 Score: 111
Period size: 29 Copynumber: 2.8 Consensus size: 30
27218002 AATCAGTCTC
27218012 AACATATACTGGGCTGAAGCC-TTTCATTA
1 AACATATACTGGGCTGAAGCCTTTTCATTA
27218041 AACGAT-TACTGGGCTGAAGCCTTTTCA-TA
1 AAC-ATATACTGGGCTGAAGCCTTTTCATTA
*
27218070 ATTCATATCACTGGGCTGAAGCCTTT
1 A-ACATAT-ACTGGGCTGAAGCCTTT
27218096 ACTGTAAACG
Statistics
Matches: 49, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
29 23 0.47
30 9 0.18
31 17 0.35
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (30 bp):
AACATATACTGGGCTGAAGCCTTTTCATTA
Found at i:27218438 original size:11 final size:11
Alignment explanation
Indices: 27218407--27218454 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
27218397 ATATGAATAC
27218407 ATCATGTGCAT
1 ATCATGTGCAT
*
27218418 ATCA--TACAT
1 ATCATGTGCAT
27218427 ATCATGTGCAT
1 ATCATGTGCAT
*
27218438 ATCATGT-CAA
1 ATCATGTGCAT
27218448 ATCATGT
1 ATCATGT
27218455 ACATCAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:27218533 original size:25 final size:25
Alignment explanation
Indices: 27218490--27218537 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
27218480 CATAATTAAC
* **
27218490 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGTAAAACAGTCATTTTTA
27218515 CCTAGGGGTAAAACAGTCATTTT
1 CCTAGGGGTAAAACAGTCATTTT
27218538 CCATATTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGTAAAACAGTCATTTTTA
Found at i:27229377 original size:74 final size:74
Alignment explanation
Indices: 27229256--27229401 Score: 274
Period size: 74 Copynumber: 2.0 Consensus size: 74
27229246 AAAATCAAGG
27229256 GGATTAGGATGAGCATTAAGGGTAGATATGATGGTGATAAAATTGGAGAACATGAAGGGAAATTA
1 GGATTAGGATGAGCATTAAGGGTAGATATGATGGTGATAAAATTGGAGAACATGAAGGGAAATTA
27229321 TCTTGACGA
66 TCTTGACGA
**
27229330 GGATTAGGATGAGCATTAAGGGTAGATATGATGGTGATAAAATTGGAGAATTTGAAGGGAAATTA
1 GGATTAGGATGAGCATTAAGGGTAGATATGATGGTGATAAAATTGGAGAACATGAAGGGAAATTA
27229395 TCTTGAC
66 TCTTGAC
27229402 AAGTTTAAGT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 70 1.00
ACGTcount: A:0.37, C:0.05, G:0.31, T:0.27
Consensus pattern (74 bp):
GGATTAGGATGAGCATTAAGGGTAGATATGATGGTGATAAAATTGGAGAACATGAAGGGAAATTA
TCTTGACGA
Found at i:27230494 original size:28 final size:29
Alignment explanation
Indices: 27230441--27230501 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 29
27230431 TGAGCATGAC
27230441 TATAAATGTGATTTGGGCCTAATGGGCAA
1 TATAAATGTGATTTGGGCCTAATGGGCAA
* *
27230470 TATAAATGTGA-TTGGGCCTAGTGGGCCA
1 TATAAATGTGATTTGGGCCTAATGGGCAA
27230498 TATA
1 TATA
27230502 CAGGTATGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 19 0.63
29 11 0.37
ACGTcount: A:0.30, C:0.11, G:0.28, T:0.31
Consensus pattern (29 bp):
TATAAATGTGATTTGGGCCTAATGGGCAA
Found at i:27242625 original size:27 final size:27
Alignment explanation
Indices: 27242591--27242768 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
27242581 TAAACTGTAC
27242591 AGCACTAAGTGTGCGATATGACTATGT
1 AGCACTAAGTGTGCGATATGACTATGT
* * *
27242618 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATATGACTATGT
* *
27242644 ATGCACTAAGTGTGCGAAATGA-TCATGC
1 A-GCACTAAGTGTGCGATATGACT-ATGT
* *
27242672 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TATGACTATGT
* * *
27242700 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATATGACTATGT
* * *
27242727 GGCACTAAGTGTGCGAGT-TGATTATAT
1 AGCACTAAGTGTGCGA-TATGACTATGT
*
27242754 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27242769 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.01
27 105 0.81
28 22 0.17
29 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATATGACTATGT
Done.