Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold4018.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 86888
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Warning! 34 characters in sequence are not A, C, G, or T
Found at i:1706 original size:46 final size:46
Alignment explanation
Indices: 1631--1945 Score: 311
Period size: 46 Copynumber: 6.8 Consensus size: 46
1621 TGTAACCCGC
* * ***
1631 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
1677 TCA-AAGGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAA-GTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *** * *
1723 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
1770 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *** * *
1816 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
1863 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1909 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1946 TGCTCAACCA
Statistics
Matches: 219, Mismatches: 34, Indels: 32
0.77 0.12 0.11
Matches are distributed among these distances:
43 2 0.01
44 6 0.03
45 2 0.01
46 137 0.63
47 64 0.29
49 6 0.03
50 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:1753 original size:47 final size:47
Alignment explanation
Indices: 1685--1853 Score: 222
Period size: 47 Copynumber: 3.6 Consensus size: 47
1675 ATTCAAAGGT
1685 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCTC
* * * *
1732 GAACTTGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC-CATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC-T---C
1778 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCTC
*
1825 GAACTTGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
1854 CATTTGCATC
Statistics
Matches: 104, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
46 28 0.27
47 56 0.54
49 1 0.01
50 8 0.08
51 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:1797 original size:93 final size:93
Alignment explanation
Indices: 1638--1895 Score: 437
Period size: 93 Copynumber: 2.8 Consensus size: 93
1628 CGCCCATAAG
* * *** * *
1638 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATTCA-AAGGTGAACTCGGACTCAACTC
1 CGAACTTGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA-GTGAACTCGGACTCAACTC
1702 AACGAGTTCGGATGCCTAGTTACATCTCT
65 AACGAGTTCGGATGCCTAGTTACATCTCT
1731 CGAACTTGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTTGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1796 ACGAGTTCGGATGCCTAGTTACATCTCT
66 ACGAGTTCGGATGCCTAGTTACATCTCT
1824 CGAACTTGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTTGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1889 ACGAGTT
66 ACGAGTT
1896 TGGACATTCG
Statistics
Matches: 157, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
93 155 0.99
94 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (93 bp):
CGAACTTGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCT
Found at i:12271 original size:27 final size:27
Alignment explanation
Indices: 12214--12271 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
12204 TTTAGGCACG
* **
12214 AGGGGCAAAATAGTCATTTAACACCTT
1 AGGGGCAAAATAGTAATTTAACACCAC
* * *
12241 AGGGGCAAAATGGTAATTTTACCCCAC
1 AGGGGCAAAATAGTAATTTAACACCAC
12268 AGGG
1 AGGG
12272 TATCTCGATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (27 bp):
AGGGGCAAAATAGTAATTTAACACCAC
Found at i:23895 original size:14 final size:14
Alignment explanation
Indices: 23876--23904 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
23866 CTCATACATA
23876 CTTATTAAATTAAT
1 CTTATTAAATTAAT
23890 CTTATTAAATTAAT
1 CTTATTAAATTAAT
23904 C
1 C
23905 AATCTCTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (14 bp):
CTTATTAAATTAAT
Found at i:34181 original size:18 final size:18
Alignment explanation
Indices: 34144--34177 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
34134 TTTAAACATT
34144 TTTTTCTTTTCACTTTTC
1 TTTTTCTTTTCACTTTTC
34162 TTTTTCTTTTC-CTTTT
1 TTTTTCTTTTCACTTTT
34178 TCTTCTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTCTTTTCACTTTTC
Found at i:40361 original size:17 final size:17
Alignment explanation
Indices: 40339--40373 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
40329 TAGGAAAGAG
40339 TCTGAGAAGTCTTGGGT
1 TCTGAGAAGTCTTGGGT
40356 TCTGAGAAGTCTTGGGT
1 TCTGAGAAGTCTTGGGT
40373 T
1 T
40374 TAAGCCTTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.11, G:0.34, T:0.37
Consensus pattern (17 bp):
TCTGAGAAGTCTTGGGT
Found at i:40680 original size:21 final size:23
Alignment explanation
Indices: 40651--40692 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
40641 GAGTAGTCGG
40651 TTTGAGGGA-TTTG-AGGAGGAA
1 TTTGAGGGATTTTGAAGGAGGAA
*
40672 TTTGTGGGATTTTGAAGGAGG
1 TTTGAGGGATTTTGAAGGAGG
40693 TGGGAGTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 4 0.22
23 6 0.33
ACGTcount: A:0.24, C:0.00, G:0.43, T:0.33
Consensus pattern (23 bp):
TTTGAGGGATTTTGAAGGAGGAA
Found at i:41590 original size:16 final size:16
Alignment explanation
Indices: 41569--41600 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
41559 TCTTTAGAAG
41569 AATAAACATGAACTGA
1 AATAAACATGAACTGA
41585 AATAAACATGAACTGA
1 AATAAACATGAACTGA
41601 TTAAGTACTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.19
Consensus pattern (16 bp):
AATAAACATGAACTGA
Found at i:45021 original size:53 final size:52
Alignment explanation
Indices: 44923--45025 Score: 145
Period size: 53 Copynumber: 2.0 Consensus size: 52
44913 AAAAAGAAGA
*
44923 GTTGGAGGGTTTGTGGCTTAGGGTGGATGGAAGAGGAAAGACGCACAAGCGG
1 GTTGGAGGGTTTGTGGCTTAGGGTGGATGGAAGAAGAAAGACGCACAAGCGG
* * *
44975 GTTGGAGGGTTTGTTGGCTTATGGTGGAT-GAATGAAGAATGCCGCACAAGC
1 GTTGGAGGGTTTG-TGGCTTAGGGTGGATGGAA-GAAGAAAGACGCACAAGC
45026 AGCTAGGGTG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
52 16 0.36
53 29 0.64
ACGTcount: A:0.24, C:0.11, G:0.42, T:0.23
Consensus pattern (52 bp):
GTTGGAGGGTTTGTGGCTTAGGGTGGATGGAAGAAGAAAGACGCACAAGCGG
Found at i:51092 original size:57 final size:56
Alignment explanation
Indices: 50999--51108 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 56
50989 AAATACTTCA
* * * *
50999 TGAGGAATCTTTTAGCTTACTCTTGCCATGTCGAAATTGAGTTTGGTGGCAATNTCG
1 TGAGAAATCTTTCAGCTAACTCTTGCCATGTAGAAATTGAGTTTGGTGGCAAT-TCG
*
51056 TGAGAAATCTTTCGGCTAACTCTTGCCATGTAGAAATTGAGTTTGGTGGCAAT
1 TGAGAAATCTTTCAGCTAACTCTTGCCATGTAGAAATTGAGTTTGGTGGCAAT
51109 GAATTCAATC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.35
Consensus pattern (56 bp):
TGAGAAATCTTTCAGCTAACTCTTGCCATGTAGAAATTGAGTTTGGTGGCAATTCG
Found at i:51568 original size:67 final size:67
Alignment explanation
Indices: 51460--51595 Score: 263
Period size: 67 Copynumber: 2.0 Consensus size: 67
51450 ATTCATATTC
*
51460 TCAAAATTCATTCCTTTCGTCCTTTTCTAATTCACTTGTCTTATTCACTGTCGAAAGGTTCGTTC
1 TCAAAATTCATTCCTTTCGTCCATTTCTAATTCACTTGTCTTATTCACTGTCGAAAGGTTCGTTC
51525 TA
66 TA
51527 TCAAAATTCATTCCTTTCGTCCATTTCTAATTCACTTGTCTTATTCACTGTCGAAAGGTTCGTTC
1 TCAAAATTCATTCCTTTCGTCCATTTCTAATTCACTTGTCTTATTCACTGTCGAAAGGTTCGTTC
51592 TA
66 TA
51594 TC
1 TC
51596 TCAGGGTCTA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 68 1.00
ACGTcount: A:0.21, C:0.24, G:0.10, T:0.44
Consensus pattern (67 bp):
TCAAAATTCATTCCTTTCGTCCATTTCTAATTCACTTGTCTTATTCACTGTCGAAAGGTTCGTTC
TA
Found at i:51998 original size:68 final size:68
Alignment explanation
Indices: 51918--52053 Score: 245
Period size: 68 Copynumber: 2.0 Consensus size: 68
51908 TTTTAAAAGA
*
51918 TGGTTAAAAACTACTTAAAAACTAAGTAAATAATTAAAATAAAACAAACGAGTTCTAGTTCACGA
1 TGGTTAAAAACTACTTAAAAACTAAGGAAATAATTAAAATAAAACAAACGAGTTCTAGTTCACGA
51983 TTT
66 TTT
* *
51986 TGGTTAAAAACTATTTAAAAACTAAGGAAATAATTAAAATAAAACAAACGAGTTCTGGTTCACGA
1 TGGTTAAAAACTACTTAAAAACTAAGGAAATAATTAAAATAAAACAAACGAGTTCTAGTTCACGA
52051 TTT
66 TTT
52054 CAAATAAGAT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.29
Consensus pattern (68 bp):
TGGTTAAAAACTACTTAAAAACTAAGGAAATAATTAAAATAAAACAAACGAGTTCTAGTTCACGA
TTT
Found at i:55257 original size:43 final size:42
Alignment explanation
Indices: 55206--55300 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 42
55196 TTCCAGACGT
*
55206 GGTCTTACATACAATCAAACATCGATGCC-ACTGTCCCAGACAA
1 GGTCTTACATAAAATCAAACA-CGATGCCGA-TGTCCCAGACAA
* * * * * *
55249 GGTTTTACACAAAATCAGATACGATGCCGATGTCCTAGACAT
1 GGTCTTACATAAAATCAAACACGATGCCGATGTCCCAGACAA
55291 GGTCTTACAT
1 GGTCTTACAT
55301 GTAAAACAGA
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
42 25 0.60
43 17 0.40
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
GGTCTTACATAAAATCAAACACGATGCCGATGTCCCAGACAA
Found at i:60416 original size:12 final size:13
Alignment explanation
Indices: 60388--60417 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
60378 TTTTCTTTTC
60388 TTTTCACTTTCCT
1 TTTTCACTTTCCT
60401 TTTTC-CTTTCCT
1 TTTTCACTTTCCT
60413 TTTTC
1 TTTTC
60418 TTCTTTTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTTCACTTTCCT
Found at i:60958 original size:12 final size:12
Alignment explanation
Indices: 60941--60966 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
60931 TGCCACACGA
60941 CTGTGTGCCAGG
1 CTGTGTGCCAGG
60953 CTGTGTGCCAGG
1 CTGTGTGCCAGG
60965 CT
1 CT
60967 ATGTAACACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.27, G:0.38, T:0.27
Consensus pattern (12 bp):
CTGTGTGCCAGG
Found at i:61107 original size:63 final size:63
Alignment explanation
Indices: 60954--61239 Score: 271
Period size: 63 Copynumber: 4.6 Consensus size: 63
60944 TGTGCCAGGC
* * * * *
60954 TGTGTGCCAGGCTATGTAACACACTGTTTGTAC-TTGGAGACATATGGGCTAAGGACACGAGTG
1 TGTGT-CCAGGCTATGTAACACACTGTTTGTACATTGAAGACACACGGGCCAAGGACACGAGCG
* * * * * * *
61017 TGTGTCTAGG-TCGTGAAACATAGTGTTTGTACATTGAAGACATACGGGCCAAGGACACGAACG
1 TGTGTCCAGGCT-ATGTAACACACTGTTTGTACATTGAAGACACACGGGCCAAGGACACGAGCG
* * ** * *
61080 TGTGTCCAGACTATATAACACACTGTTTGTAGTTTGGAGACACACGGGCCAAGGACA-GAGCA
1 TGTGTCCAGGCTATGTAACACACTGTTTGTACATTGAAGACACACGGGCCAAGGACACGAGCG
* *
61142 TG-GATCCAGGCTATGTGACACACTGTTTGTACATT-AGAGACACACGGGCCAAAGACAC-AGGC
1 TGTG-TCCAGGCTATGTAACACACTGTTTGTACATTGA-AGACACACGGGCCAAGGACACGA-GC
61204 G
63 G
* *
61205 TGTGTCCAGG-TCATGTAACACACTGTATATACATT
1 TGTGTCCAGGCT-ATGTAACACACTGTTTGTACATT
61240 AGGACCACAC
Statistics
Matches: 180, Mismatches: 34, Indels: 18
0.78 0.15 0.08
Matches are distributed among these distances:
61 2 0.01
62 72 0.40
63 104 0.58
64 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (63 bp):
TGTGTCCAGGCTATGTAACACACTGTTTGTACATTGAAGACACACGGGCCAAGGACACGAGCG
Found at i:62278 original size:63 final size:63
Alignment explanation
Indices: 62200--62326 Score: 245
Period size: 63 Copynumber: 2.0 Consensus size: 63
62190 ATATCTACCA
*
62200 TAATTCACATATAAATACAAAATGGCCGAAACATCAATACCACAACCAAACATAACCATCAAT
1 TAATTCACATATAAATACAAAATGGCCGAAACATCAATACCACAACCAAACAGAACCATCAAT
62263 TAATTCACATATAAATACAAAATGGCCGAAACATCAATACCACAACCAAACAGAACCATCAAT
1 TAATTCACATATAAATACAAAATGGCCGAAACATCAATACCACAACCAAACAGAACCATCAAT
62326 T
1 T
62327 GATAAAAGCA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (63 bp):
TAATTCACATATAAATACAAAATGGCCGAAACATCAATACCACAACCAAACAGAACCATCAAT
Found at i:62340 original size:63 final size:63
Alignment explanation
Indices: 62210--62340 Score: 201
Period size: 63 Copynumber: 2.1 Consensus size: 63
62200 TAATTCACAT
* * * *
62210 ATAAATACAAAATGGCCGAAACATCAATACCACAACCAAACATAACCATCAATTAATTCACAT
1 ATAAATACAAAATGGCCGAAACATCAATACCACAACCAAACAGAACCATCAATTAATTAAAAC
*
62273 ATAAATACAAAATGGCCGAAACATCAATACCACAACCAAACAGAACCATCAATTGA-TAAAAGC
1 ATAAATACAAAATGGCCGAAACATCAATACCACAACCAAACAGAACCATCAATTAATTAAAA-C
62336 ATAAA
1 ATAAA
62341 AATCCAAGCT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
62 3 0.05
63 59 0.95
ACGTcount: A:0.53, C:0.24, G:0.07, T:0.17
Consensus pattern (63 bp):
ATAAATACAAAATGGCCGAAACATCAATACCACAACCAAACAGAACCATCAATTAATTAAAAC
Found at i:64101 original size:56 final size:55
Alignment explanation
Indices: 64041--64175 Score: 189
Period size: 56 Copynumber: 2.4 Consensus size: 55
64031 TCCTAGACAG
* *
64041 GGTCTTACTCACACACATATATCGGAGTCGCATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCACACACATATATCGGAGTCACATATCGATGCCAACGAATTAAAT-T
** * *
64097 GGTCTTACTTGCACACATATATCAGAGTCACATATTGATGCCAACGAATTAAATT
1 GGTCTTACTCACACACATATATCGGAGTCACATATCGATGCCAACGAATTAAATT
* *
64152 GGTCTTACTCTCACAAATATATCG
1 GGTCTTACTCACACACATATATCG
64176 ATGCCATGGT
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
55 21 0.30
56 48 0.70
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (55 bp):
GGTCTTACTCACACACATATATCGGAGTCACATATCGATGCCAACGAATTAAATT
Found at i:76369 original size:18 final size:18
Alignment explanation
Indices: 76346--76380 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76336 CTTTCGTCCT
*
76346 CTAAGGGAAAGTAGAAAG
1 CTAAGGGAAAGAAGAAAG
*
76364 CTAAGGTAAAGAAGAAA
1 CTAAGGGAAAGAAGAAA
76381 TCGAATAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.06, G:0.29, T:0.11
Consensus pattern (18 bp):
CTAAGGGAAAGAAGAAAG
Found at i:82022 original size:282 final size:282
Alignment explanation
Indices: 81518--82081 Score: 1119
Period size: 282 Copynumber: 2.0 Consensus size: 282
81508 TTTTCAAATG
81518 ATGAACGAGGGGTTCACTCAATATGTCCAGACAAATTTGGCTACTCAACAACCTCTACCCCTGCC
1 ATGAACGAGGGGTTCACTCAATATGTCCAGACAAATTTGGCTACTCAACAACCTCTACCCCTGCC
81583 AATTCCTTAACCAATCCCTGTAGTTCCTCAAGTTATTGATCCTATACGATTGAACAAGCCACCAG
66 AATTCCTTAACCAATCCCTGTAGTTCCTCAAGTTATTGATCCTATACGATTGAACAAGCCACCAG
81648 TTGATAAAATTCGTAAGTATGGGGCTGAAGAGTCCAGGGCCACAGTTGAATATGATCCTAAGAGA
131 TTGATAAAATTCGTAAGTATGGGGCTGAAGAGTCCAGGGCCACAGTTGAATATGATCCTAAGAGA
81713 GCTGAATTCTGGCTTGAAAATACAACATAGTATTTGATGAGTTGTCATGTACACCCAAAGAATGA
196 GCTGAATTCTGGCTTGAAAATACAACATAGTATTTGATGAGTTGTCATGTACACCCAAAGAATGA
81778 ATTAAATGTGTTTATCCTTATT
261 ATTAAATGTGTTTATCCTTATT
*
81800 ATGAACGAGTGGTTCACTCAATATGTCCAGACAAATTTGGCTACTCAACAACCTCTACCCCTGCC
1 ATGAACGAGGGGTTCACTCAATATGTCCAGACAAATTTGGCTACTCAACAACCTCTACCCCTGCC
81865 AATTCCTTAACCAATCCCTGTAGTTCCTCAAGTTATTGATCCTATACGATTGAACAAGCCACCAG
66 AATTCCTTAACCAATCCCTGTAGTTCCTCAAGTTATTGATCCTATACGATTGAACAAGCCACCAG
81930 TTGATAAAATTCGTAAGTATGGGGCTGAAGAGTCCAGGGCCACAGTTGAATATGATCCTAAGAGA
131 TTGATAAAATTCGTAAGTATGGGGCTGAAGAGTCCAGGGCCACAGTTGAATATGATCCTAAGAGA
81995 GCTGAATTCTGGCTTGAAAATACAACATAGTATTTGATGAGTTGTCATGTACACCCAAAGAATGA
196 GCTGAATTCTGGCTTGAAAATACAACATAGTATTTGATGAGTTGTCATGTACACCCAAAGAATGA
82060 ATTAAATGTGTTTATCCTTATT
261 ATTAAATGTGTTTATCCTTATT
82082 GAGAGACACT
Statistics
Matches: 281, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
282 281 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (282 bp):
ATGAACGAGGGGTTCACTCAATATGTCCAGACAAATTTGGCTACTCAACAACCTCTACCCCTGCC
AATTCCTTAACCAATCCCTGTAGTTCCTCAAGTTATTGATCCTATACGATTGAACAAGCCACCAG
TTGATAAAATTCGTAAGTATGGGGCTGAAGAGTCCAGGGCCACAGTTGAATATGATCCTAAGAGA
GCTGAATTCTGGCTTGAAAATACAACATAGTATTTGATGAGTTGTCATGTACACCCAAAGAATGA
ATTAAATGTGTTTATCCTTATT
Found at i:85179 original size:49 final size:49
Alignment explanation
Indices: 85116--85213 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
85106 GAAAATTGAA
85116 AATACACATGTATTCATCAATGGAATCATTCGAAATCTTTAACAGTTTT
1 AATACACATGTATTCATCAATGGAATCATTCGAAATCTTTAACAGTTTT
85165 AATACACATGTATTCATCAATGGAATCATTCGAAATCTTTAACAGTTTT
1 AATACACATGTATTCATCAATGGAATCATTCGAAATCTTTAACAGTTTT
85214 TCAAAATATC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (49 bp):
AATACACATGTATTCATCAATGGAATCATTCGAAATCTTTAACAGTTTT
Done.