Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold4100.1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81187
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Warning! 455 characters in sequence are not A, C, G, or T
Found at i:3706 original size:29 final size:30
Alignment explanation
Indices: 3672--3743 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
3662 ATCAACCGCG
*
3672 CACACTTAGTGCCATGTAC-TTTAAACTCA
1 CACACTTAGTGCCATGTACATTTAAACCCA
*
3701 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCA
3730 CACACTTAGTGCCA
1 CACACTTAGTGCCA
3744 ATCTCATGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 30 0.81
30 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCA
Found at i:11231 original size:39 final size:38
Alignment explanation
Indices: 11165--11274 Score: 139
Period size: 39 Copynumber: 2.8 Consensus size: 38
11155 CAGTGATGTT
* *
11165 TATCCAGACTTGGGGTACGCAGCCTATGTGCTGGAATTA
1 TATCCAGACTTAGGGT-CGCAGGCTATGTGCTGGAATTA
11204 TATCCAGACTTAGGGTCGGCAGGCTATGTGCTGGAATTA
1 TATCCAGACTTAGGGTC-GCAGGCTATGTGCTGGAATTA
* * * *
11243 TAACCGGACTTAAGGTCCGCAGGCTACGTGCT
1 TATCCAGACTTAGGGT-CGCAGGCTATGTGCT
11275 AGAAGTACGT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
38 1 0.02
39 61 0.97
40 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (38 bp):
TATCCAGACTTAGGGTCGCAGGCTATGTGCTGGAATTA
Found at i:20219 original size:13 final size:13
Alignment explanation
Indices: 20201--20225 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20191 TTAATTTTAT
20201 TTGGCCACACGGA
1 TTGGCCACACGGA
20214 TTGGCCACACGG
1 TTGGCCACACGG
20226 GCGTGTGACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.16
Consensus pattern (13 bp):
TTGGCCACACGGA
Found at i:24768 original size:83 final size:83
Alignment explanation
Indices: 24629--24790 Score: 324
Period size: 83 Copynumber: 2.0 Consensus size: 83
24619 TTTTATGAAT
24629 TTCCATGGATTAGATAGCACATTAAGCATACATAACACCAAATATGAACTTGATTAGCCATTCCA
1 TTCCATGGATTAGATAGCACATTAAGCATACATAACACCAAATATGAACTTGATTAGCCATTCCA
24694 ATGGCTAATCATTAGCCA
66 ATGGCTAATCATTAGCCA
24712 TTCCATGGATTAGATAGCACATTAAGCATACATAACACCAAATATGAACTTGATTAGCCATTCCA
1 TTCCATGGATTAGATAGCACATTAAGCATACATAACACCAAATATGAACTTGATTAGCCATTCCA
24777 ATGGCTAATCATTA
66 ATGGCTAATCATTA
24791 CCAAGCATTT
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 79 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (83 bp):
TTCCATGGATTAGATAGCACATTAAGCATACATAACACCAAATATGAACTTGATTAGCCATTCCA
ATGGCTAATCATTAGCCA
Found at i:27227 original size:43 final size:43
Alignment explanation
Indices: 27165--27371 Score: 271
Period size: 43 Copynumber: 4.9 Consensus size: 43
27155 TACCATACCA
*
27165 ATGCCATATCCCAGATATGGTCTTACATAG-GATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATAGAAATCTCATATCG
* * *
27207 ATGCCAATAGCCCAGCTATGGTCTTACA-CGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATAGAAATCTCATATCG
* *
27250 ATTCCATATCCCAGATATGGTCTTACATAG-GATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATAGAAATCTCATATCG
* * *
27292 ATGCCAATAGCCCAGCTATGGTCTTACGT-GAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATAGAAATCTCATATCG
*
27335 ATGCCATATCCCAGATATGGTCTTACA-CGAAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACATAGAAATCTCA
27372 ACTAACCCTA
Statistics
Matches: 142, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
42 70 0.49
43 72 0.51
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCATATCCCAGATATGGTCTTACATAGAAATCTCATATCG
Found at i:27371 original size:85 final size:85
Alignment explanation
Indices: 27165--27361 Score: 367
Period size: 85 Copynumber: 2.3 Consensus size: 85
27155 TACCATACCA
27165 ATGCCATATCCCAGATATGGTCTTACATAGGATCTCATATCGATGCCAATAGCCCAGCTATGGTC
1 ATGCCATATCCCAGATATGGTCTTACATAGGATCTCATATCGATGCCAATAGCCCAGCTATGGTC
27230 TTACACGAAATCTCATATCG
66 TTACACGAAATCTCATATCG
*
27250 ATTCCATATCCCAGATATGGTCTTACATAGGATCTCATATCGATGCCAATAGCCCAGCTATGGTC
1 ATGCCATATCCCAGATATGGTCTTACATAGGATCTCATATCGATGCCAATAGCCCAGCTATGGTC
**
27315 TTACGTGAAATCTCATATCG
66 TTACACGAAATCTCATATCG
27335 ATGCCATATCCCAGATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
27362 CGAAATCTCA
Statistics
Matches: 108, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 108 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (85 bp):
ATGCCATATCCCAGATATGGTCTTACATAGGATCTCATATCGATGCCAATAGCCCAGCTATGGTC
TTACACGAAATCTCATATCG
Found at i:32627 original size:43 final size:43
Alignment explanation
Indices: 32568--32783 Score: 235
Period size: 43 Copynumber: 5.1 Consensus size: 43
32558 ATATATAGCT
* * * *
32568 CATA-CAATGCC-ATATCCCAGATATGGTCTTACATGTTATCT
1 CATATCAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
* * * *
32609 CATATCGATGCCAATATCCCA-ACTATGGTCTTACACGAAATCA
1 CATATCAATGCCAATGTCCCAGAC-ATGGTCTTACATGTAATCA
* *
32652 CATAACGATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
1 CATATCAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
* * *
32695 CA-ATACAATGCCAATGTCCTAGACATGGTCTTGCACGTAATCA
1 CATAT-CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
* *
32738 CA-ATACAATACCAATGTCCCAGACATGGCCTTACATGTAATCA
1 CATAT-CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
32781 CAT
1 CAT
32784 CTTAGTAATC
Statistics
Matches: 149, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
41 4 0.03
42 8 0.05
43 135 0.91
44 2 0.01
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.27
Consensus pattern (43 bp):
CATATCAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
Found at i:32737 original size:86 final size:87
Alignment explanation
Indices: 32569--32782 Score: 267
Period size: 86 Copynumber: 2.5 Consensus size: 87
32559 TATATAGCTC
* * * * *
32569 ATACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCTC-ATATCGATGCCAATATCCCAAC
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATATCAATGCCAATATCCCAAC
32632 TATGGTCTTACACGAAATCAC-
66 TATGGTCTTACACGAAATCACA
* * *
32653 ATAACGATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATA-CAATGCCAATGTCCTAG
1 AT-ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATATCAATGCCAATATCCCA-
* *
32717 AC-ATGGTCTTGCACGTAATCACA
64 ACTATGGTCTTACACGAAATCACA
* *
32740 ATACAATACCAATGTCCCAGACATGGCCTTACATGTAATCACA
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
32783 TCTTAGTAAT
Statistics
Matches: 112, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
84 2 0.02
85 7 0.06
86 96 0.86
87 7 0.06
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.27
Consensus pattern (87 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAATATCAATGCCAATATCCCAAC
TATGGTCTTACACGAAATCACA
Found at i:33434 original size:19 final size:19
Alignment explanation
Indices: 33407--33446 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
33397 TTAAGCATTT
33407 ATCAATGGC-ACTTCACAAA
1 ATCAATGGCAACTTCA-AAA
*
33426 ATCATTGGCAACTTCAAAA
1 ATCAATGGCAACTTCAAAA
33445 AT
1 AT
33447 TAAGGCATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.42, C:0.23, G:0.10, T:0.25
Consensus pattern (19 bp):
ATCAATGGCAACTTCAAAA
Found at i:39877 original size:33 final size:33
Alignment explanation
Indices: 39835--39900 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
39825 TCACTATTGG
39835 TAAACTATTTAAATCATCTGACTCAATCTGGAT
1 TAAACTATTTAAATCATCTGACTCAATCTGGAT
* *
39868 TAAACTATTTAAATTATCTGACTCAATTTGGAT
1 TAAACTATTTAAATCATCTGACTCAATCTGGAT
39901 AATCTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.39
Consensus pattern (33 bp):
TAAACTATTTAAATCATCTGACTCAATCTGGAT
Found at i:43233 original size:43 final size:43
Alignment explanation
Indices: 43185--43334 Score: 205
Period size: 43 Copynumber: 3.5 Consensus size: 43
43175 TAGCCCAACT
*
43185 ATGGTCTTACACGAAATCAC-ATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGAAATCACAAT-ACAATGCCAATGTCCCAGAC
43228 ATGGTCTTACAC-ATAATCACAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGA-AATCACAATACAATGCCAATGTCCCAGAC
* * * *
43271 ATGGTCTTACAAGTAATCACAATACAATGCCAATCTCCTAGAC
1 ATGGTCTTACACGAAATCACAATACAATGCCAATGTCCCAGAC
* *
43314 ATGGTCTTACATGTAATCACA
1 ATGGTCTTACACGAAATCACA
43335 TCTCGGTAAT
Statistics
Matches: 98, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
42 1 0.01
43 95 0.97
44 2 0.02
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCACAATACAATGCCAATGTCCCAGAC
Found at i:43972 original size:19 final size:20
Alignment explanation
Indices: 43950--43987 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
43940 TTAAGCATTC
*
43950 ATCAATGGC-ACTTCAAAAA
1 ATCAATGACAACTTCAAAAA
*
43969 ATCATTGACAACTTCAAAA
1 ATCAATGACAACTTCAAAA
43988 GTTAAGGCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.47, C:0.21, G:0.08, T:0.24
Consensus pattern (20 bp):
ATCAATGACAACTTCAAAAA
Found at i:47894 original size:108 final size:109
Alignment explanation
Indices: 47696--47919 Score: 290
Period size: 108 Copynumber: 2.1 Consensus size: 109
47686 AGGTATTTAA
* * * * *
47696 ACGGCCTGGCACACGGGCGTGTGGCATGGCCGTGTGACCCAACTTCAAAAGTTACACAGGCACGG
1 ACGGCCTAGCACACGGGCATGTGGCATGGCCATGTGACCCAAATTCAAAAGTTACACAGGCACAG
* * * *
47761 ACATGGGTTGGGACACAGTCGTGTGTCCCTATTTTGATTGTTAC
66 ACATGGGCTGGGACACAGCCATGTGTCCCTATTTCGATTGTTAC
* * * ** *
47805 ATGGCCTAGCATACGGGCATGTGGCTTGGCCATGTGACCCAAATT-TGAAGTTACACGGGCACAG
1 ACGGCCTAGCACACGGGCATGTGGCATGGCCATGTGACCCAAATTCAAAAGTTACACAGGCACAG
47869 ACATGGGCTGGGACAC-GACCATGTGTCCCTATTTCGATTGTTAC
66 ACATGGGCTGGGACACAG-CCATGTGTCCCTATTTCGATTGTTAC
47913 ACGGCCT
1 ACGGCCT
47920 GAGACACAGG
Statistics
Matches: 98, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
107 1 0.01
108 59 0.60
109 38 0.39
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (109 bp):
ACGGCCTAGCACACGGGCATGTGGCATGGCCATGTGACCCAAATTCAAAAGTTACACAGGCACAG
ACATGGGCTGGGACACAGCCATGTGTCCCTATTTCGATTGTTAC
Found at i:55578 original size:59 final size:59
Alignment explanation
Indices: 55486--55602 Score: 191
Period size: 59 Copynumber: 2.0 Consensus size: 59
55476 GAAAATAGAT
* *
55486 TCATCAAGGTTCGATTACATAATTTATTAACTATTTAATTCCATT-TATACTATTTTTAA
1 TCATCAAGGTTCGATCACATAATTTATTAACTATGTAATTCCATTAT-TACTATTTTTAA
*
55545 TCATCAAGGTTCGATCACATAATTTATTCACTATGTAATTCCATTATTACTATTTTTA
1 TCATCAAGGTTCGATCACATAATTTATTAACTATGTAATTCCATTATTACTATTTTTA
55603 GTGATTTTTC
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
59 53 0.98
60 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.06, T:0.46
Consensus pattern (59 bp):
TCATCAAGGTTCGATCACATAATTTATTAACTATGTAATTCCATTATTACTATTTTTAA
Found at i:56415 original size:40 final size:40
Alignment explanation
Indices: 56345--56642 Score: 433
Period size: 40 Copynumber: 7.5 Consensus size: 40
56335 AAACCAAGTA
* * *
56345 CCTTCGAGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
56384 CCGTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
56424 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
56464 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
56504 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
56544 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * *
56584 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
56624 CCTTCGGGACCTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
56643 TTATCATCCG
Statistics
Matches: 243, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.05
40 230 0.95
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63965 original size:40 final size:40
Alignment explanation
Indices: 63888--64350 Score: 741
Period size: 40 Copynumber: 11.6 Consensus size: 40
63878 AAACCAAGTA
* *
63888 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
63927 CCTTCGTGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63967 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
64007 CCTTCGAGACTTAGCCCGGATATAGTAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64047 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
64087 CCTTCGAGACTTAGCCCGGATATAGTAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64127 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
64167 CCTTCGAGACTTAGCCCGGATATAGTAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64207 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
64247 CCTTCGAGACTTAGCCCGGATATAGTAATTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64287 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64327 CCTTCGAGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATA
64351 NNNNNNNNNN
Statistics
Matches: 389, Mismatches: 33, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
39 13 0.03
40 376 0.97
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:64040 original size:80 final size:80
Alignment explanation
Indices: 63888--64350 Score: 849
Period size: 80 Copynumber: 5.8 Consensus size: 80
63878 AAACCAAGTA
* * * * *
63888 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGTGACTTAGCCCGGTTATA
1 CCTTTGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATA
*
63951 GTAACTCGCACAAATG
65 GTAATTCGCACAAATG
63967 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
1 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
64032 TAATTCGCACAAATG
66 TAATTCGCACAAATG
64047 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
1 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
64112 TAATTCGCACAAATG
66 TAATTCGCACAAATG
64127 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
1 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
64192 TAATTCGCACAAATG
66 TAATTCGCACAAATG
64207 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
1 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
64272 TAATTCGCACAAATG
66 TAATTCGCACAAATG
64287 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATA
1 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATA
64351 NNNNNNNNNN
Statistics
Matches: 376, Mismatches: 6, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
79 13 0.03
80 363 0.97
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (80 bp):
CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATATAG
TAATTCGCACAAATG
Found at i:73971 original size:40 final size:40
Alignment explanation
Indices: 73927--74073 Score: 285
Period size: 40 Copynumber: 3.7 Consensus size: 40
73917 CAACTCGCAC
*
73927 AAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
73967 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
74007 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
74047 AAATGCCTTCGGGACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
74074 TCATTCAAAT
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
Done.