Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold12577.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2168
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Found at i:1282 original size:12 final size:14

Alignment explanation


    Indices: 1252--1284  Score: 59
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       1242 AGAATAACTT

                          
       1252 TATTTTTTTTTTAA
          1 TATTTTTTTTTTAA

                          
       1266 TATTTTTTTTTTAA
          1 TATTTTTTTTTTAA

                  
       1280 T-TTTT
          1 TATTTT

       1285 AGTTATTATT


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  13    4  0.21
  14   15  0.79

ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82


Consensus pattern (14 bp):   
TATTTTTTTTTTAA

Found at i:1500 original size:61 final size:61

Alignment explanation


    Indices: 1405--1526  Score: 235
    Period size: 61  Copynumber: 2.0  Consensus size: 61

       1395 CTTCGAACTT

                 *                                                       
       1405 GAACCGACTCACTTCCAGGTTCAATGCTCTTGGACTTTCCACCAGGGACTTGGTTGCTTTA
          1 GAACCAACTCACTTCCAGGTTCAATGCTCTTGGACTTTCCACCAGGGACTTGGTTGCTTTA

                                                                         
       1466 GAACCAACTCACTTCCAGGTTCAATGCTCTTGGACTTTCCACCAGGGACTTGGTTGCTTTA
          1 GAACCAACTCACTTCCAGGTTCAATGCTCTTGGACTTTCCACCAGGGACTTGGTTGCTTTA

       1527 TCTGGTTTGT


Statistics
Matches: 60,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  61   60  1.00

ACGTcount: A:0.20, C:0.28, G:0.20, T:0.31


Consensus pattern (61 bp):   
GAACCAACTCACTTCCAGGTTCAATGCTCTTGGACTTTCCACCAGGGACTTGGTTGCTTTA
Done.