Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold12759.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2080
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32


Found at i:78 original size:18 final size:18

Alignment explanation


    Indices: 32--82  Score: 66
    Period size: 18  Copynumber: 2.8  Consensus size: 18

         22 GGCGCCTTTC

                   *     *    
         32 CCGCCGACGGAGCCGTGG
          1 CCGCCGATGGAGCTGTGG

                              
         50 CCGCCGATGGAGCTGTGG
          1 CCGCCGATGGAGCTGTGG

               *  *        
         68 CCGTCGTTGGAGCTG
          1 CCGCCGATGGAGCTG

         83 ATGTCGGACC


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   29  1.00

ACGTcount: A:0.10, C:0.31, G:0.43, T:0.16


Consensus pattern (18 bp):   
CCGCCGATGGAGCTGTGG
Done.