Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 108 of 284
Found at i:35429449 original size:53 final size:53
Alignment explanation
Indices: 35429389--35429493 Score: 201
Period size: 53 Copynumber: 2.0 Consensus size: 53
35429379 TTGGAGACAG
35429389 GAATAATTCATGTAAGTCCATGTCGAACACATGGCATTGGTAGGATATTGATT
1 GAATAATTCATGTAAGTCCATGTCGAACACATGGCATTGGTAGGATATTGATT
*
35429442 GAATAATTCATGTAAGTCCATGTCGAAGACATGGCATTGGTAGGATATTGAT
1 GAATAATTCATGTAAGTCCATGTCGAACACATGGCATTGGTAGGATATTGAT
35429494 AGACAGGAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.31
Consensus pattern (53 bp):
GAATAATTCATGTAAGTCCATGTCGAACACATGGCATTGGTAGGATATTGATT
Found at i:35429931 original size:52 final size:52
Alignment explanation
Indices: 35429865--35429968 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 52
35429855 CACATTGGTA
* *
35429865 TAGTTAGACGTTTCGTTTTGTGTATGGCATGCATAGGAAATTGGTTTTTTTT
1 TAGTTAGACATTTCGTTTTGTGTATGGCATGCATAGGAAATTGGTTTCTTTT
* *
35429917 TAGTTAGACATTTCGTTTTGTGTATGGCATGTATAGGAACTTGGTTTCTTTT
1 TAGTTAGACATTTCGTTTTGTGTATGGCATGCATAGGAAATTGGTTTCTTTT
35429969 GATATGATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.19, C:0.09, G:0.24, T:0.48
Consensus pattern (52 bp):
TAGTTAGACATTTCGTTTTGTGTATGGCATGCATAGGAAATTGGTTTCTTTT
Found at i:35430378 original size:58 final size:58
Alignment explanation
Indices: 35430286--35430401 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
35430276 TTTTGGTAAA
*
35430286 ATAGGGCCAGAGCGATTTCTGGATCCCCTGTTCCAAATTTAGAAATTCACCATAAATT
1 ATAGGGCAAGAGCGATTTCTGGATCCCCTGTTCCAAATTTAGAAATTCACCATAAATT
* *
35430344 ATAGGGCAAGAGCGATTTCTGGATCCCCTTTTCCAATTTTAGAAATTCACCATAAATT
1 ATAGGGCAAGAGCGATTTCTGGATCCCCTGTTCCAAATTTAGAAATTCACCATAAATT
35430402 TTAAAAACAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (58 bp):
ATAGGGCAAGAGCGATTTCTGGATCCCCTGTTCCAAATTTAGAAATTCACCATAAATT
Found at i:35433868 original size:46 final size:46
Alignment explanation
Indices: 35433801--35433895 Score: 138
Period size: 46 Copynumber: 2.1 Consensus size: 46
35433791 ACAGGATAGA
* * *
35433801 AATGAGCCATGTAAGTCCATATCAGT-TATATGGCTTTGGAGGCAGG
1 AATGAGCCATGTAAGCCCATATCA-TATATATGGCATTGGAGACAGG
*
35433847 AATGAGCCATGTAAGCCCATATTATATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGCCCATATCATATATATGGCATTGGAGACAGG
35433893 AAT
1 AAT
35433896 AATTCATGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
45 1 0.02
46 43 0.98
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (46 bp):
AATGAGCCATGTAAGCCCATATCATATATATGGCATTGGAGACAGG
Found at i:35433904 original size:46 final size:46
Alignment explanation
Indices: 35433805--35433912 Score: 137
Period size: 46 Copynumber: 2.3 Consensus size: 46
35433795 GATAGAAATG
* * *
35433805 AGCCATGTAAGTCCATATCAGTTATATGGCTTTGGAGGCAGGAATG
1 AGCCATGTAAGTCCATATCAGTTATATGGCATTGGAGACAGGAATA
* *
35433851 AGCCATGTAAGCCCATATTA-TATATATGGCATTGGAGACAGGAATA
1 AGCCATGTAAGTCCATATCAGT-TATATGGCATTGGAGACAGGAATA
**
35433897 ATTCATGTAAGTCCAT
1 AGCCATGTAAGTCCAT
35433913 GTCGAAGACA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 1 0.02
46 52 0.98
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (46 bp):
AGCCATGTAAGTCCATATCAGTTATATGGCATTGGAGACAGGAATA
Found at i:35436452 original size:19 final size:20
Alignment explanation
Indices: 35436417--35436460 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
35436407 AGGGACTAAA
*
35436417 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAGTTCTAAAATTTG
*
35436437 ATGAAAA-TTCTAAAATTTT
1 ATGAAAAGTTCTAAAATTTG
35436456 ATGAA
1 ATGAA
35436461 TGCATGTGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGAAAAGTTCTAAAATTTG
Found at i:35439724 original size:40 final size:40
Alignment explanation
Indices: 35439616--35439845 Score: 299
Period size: 40 Copynumber: 5.8 Consensus size: 40
35439606 CGGATGATAA
*
35439616 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAATT
35439656 CCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATT
* *
35439695 CTGGGCTAAGTCCCGAAGGCATTTTTGTGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATT
* **
35439735 CCGGGCTAAGTCCCGAAGGCATTTATGCAAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAT-T
* **
35439775 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAT-T
* *
35439815 CCGGGCTAAGT-CCTAAGGCATTTGAGTGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGT
35439846 GGCTATATCC
Statistics
Matches: 171, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 52 0.30
40 118 0.69
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATT
Found at i:35439844 original size:119 final size:119
Alignment explanation
Indices: 35439616--35439845 Score: 322
Period size: 119 Copynumber: 1.9 Consensus size: 119
35439606 CGGATGATAA
* *
35439616 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCAAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
* ** * **
35439681 GTGAGTTACTAATTCTGGGCTAAGTCCCGAAGGCATTTTTGTGAGTTACTAATT
66 GCGAACTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGAGTGAGTTACTAATT
*
35439735 CCGGGCTAAGTCCCGAAGGCATTTATGCAAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTATGCAAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGCATTT
*
35439799 GTGCGAACTACT-ATATCCGGGCTAAGT-CCTAAGGCATTTGAGTGAGT
64 GTGCGAACTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGAGTGAGT
35439846 GGCTATATCC
Statistics
Matches: 98, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
118 2 0.02
119 63 0.64
120 33 0.34
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTATGCAAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTTGT
GCGAACTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGAGTGAGTTACTAATT
Found at i:35449136 original size:12 final size:12
Alignment explanation
Indices: 35449119--35449145 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
35449109 TGGGCATACT
35449119 TATGTATATATA
1 TATGTATATATA
35449131 TATGTATATATA
1 TATGTATATATA
35449143 TAT
1 TAT
35449146 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:35461489 original size:40 final size:40
Alignment explanation
Indices: 35461404--35461591 Score: 193
Period size: 40 Copynumber: 4.7 Consensus size: 40
35461394 ATTTCTAGCG
* * * *
35461404 GAAGCCTACGTGTCTTTAA-CCCGAATACCATTCCAGCAC
1 GAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAC
* *
35461443 GAAGCCTGCGGATCTTTATGCCCGGATACAATTCCAGCA-
1 GAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAC
* * * * **
35461482 TATAGCCTGCAGGTCTTTAAGCTCGGATACCATTCTGGCAC
1 GA-AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAC
* * *
35461523 GAAGCCTGCGGGTCTTTATGCCTGGATACAATTCTAGCA-
1 GAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAC
*
35461562 TATAGCCTGCGGGTCTTTAAGCCCGGATAC
1 GA-AGCCTGCGGGTCTTTAAGCCCGGATAC
35461592 CACATCAAAT
Statistics
Matches: 121, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
39 17 0.14
40 103 0.85
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
GAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAC
Found at i:35461539 original size:80 final size:80
Alignment explanation
Indices: 35461415--35461593 Score: 279
Period size: 80 Copynumber: 2.2 Consensus size: 80
35461405 AAGCCTACGT
*
35461415 GTCTTTAA-CCCGAATACCATTCCAGCACGAAGCCTGCGGATCTTTATGCCCGGATACAATTCCA
1 GTCTTTAAGCCCGGATACCATTCCAGCACGAAGCCTGCGGATCTTTATGCCCGGATACAATTCCA
35461479 GCATATAGCCTGCAG
66 GCATATAGCCTGCAG
* ** * * *
35461494 GTCTTTAAGCTCGGATACCATTCTGGCACGAAGCCTGCGGGTCTTTATGCCTGGATACAATTCTA
1 GTCTTTAAGCCCGGATACCATTCCAGCACGAAGCCTGCGGATCTTTATGCCCGGATACAATTCCA
*
35461559 GCATATAGCCTGCGG
66 GCATATAGCCTGCAG
35461574 GTCTTTAAGCCCGGATACCA
1 GTCTTTAAGCCCGGATACCA
35461594 CATCAAATAT
Statistics
Matches: 90, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 8 0.09
80 82 0.91
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
GTCTTTAAGCCCGGATACCATTCCAGCACGAAGCCTGCGGATCTTTATGCCCGGATACAATTCCA
GCATATAGCCTGCAG
Found at i:35467309 original size:14 final size:15
Alignment explanation
Indices: 35467290--35467320 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
35467280 TTTGTGATTA
35467290 TTATGTGTG-AATTT
1 TTATGTGTGAAATTT
35467304 TTATGTGTGAAATTT
1 TTATGTGTGAAATTT
35467319 TT
1 TT
35467321 GTGCTTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.23, C:0.00, G:0.19, T:0.58
Consensus pattern (15 bp):
TTATGTGTGAAATTT
Found at i:35470909 original size:40 final size:40
Alignment explanation
Indices: 35470865--35471016 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
35470855 ATAACCACAA
* * *
35470865 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
35470905 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * *
35470945 GCACAAATGCCTTCGGGTCTTAGCCCGAATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
35470985 GGATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
35471017 CATTCAAATG
Statistics
Matches: 99, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 94 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:35480103 original size:27 final size:27
Alignment explanation
Indices: 35480046--35480099 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
35480036 TTCACGCACG
* *
35480046 AGGGGCAAAATAGTCATTTAACACCCT
1 AGGGGCAAAATAGTAATTTAACACCCA
* *
35480073 AGGGGCAAAATGGTAATTTTAC-CCCA
1 AGGGGCAAAATAGTAATTTAACACCCA
35480099 A
1 A
35480100 AGGGTATCTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AGGGGCAAAATAGTAATTTAACACCCA
Found at i:35480121 original size:26 final size:27
Alignment explanation
Indices: 35480084--35480147 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
35480074 GGGGCAAAAT
*
35480084 GGTAATTTTACCCCA-AAGGGTATCTC
1 GGTAATTCTACCCCACAAGGGTATCTC
* * *
35480110 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCCACAAGGGTATCTC
35480137 GGTAATTCTAC
1 GGTAATTCTAC
35480148 AACTTATCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
26 13 0.39
27 20 0.61
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCCACAAGGGTATCTC
Found at i:35481984 original size:46 final size:49
Alignment explanation
Indices: 35481854--35481991 Score: 164
Period size: 47 Copynumber: 2.9 Consensus size: 49
35481844 GCACTCGGCC
35481854 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA
1 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTA
* * * *
35481905 GTT-ACAT--TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-C-A
1 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTA
*
35481948 -TTCGCATCCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
35481992 TGCTCAACCA
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
44 1 0.01
45 2 0.03
46 28 0.38
47 29 0.39
48 2 0.03
50 3 0.04
51 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (49 bp):
GTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTA
Found at i:35482448 original size:30 final size:30
Alignment explanation
Indices: 35482414--35482473 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
35482404 ATTTAATACG
*
35482414 AACTTTGGAAAAATTACAGTTTTACCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
* * * *
35482444 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTACCCCTA
35482474 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTACCCCTA
Found at i:35489506 original size:93 final size:93
Alignment explanation
Indices: 35489392--35489562 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
35489382 GCCCCTAAGT
* * *
35489392 GAACTCGGATTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
35489457 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
35489485 GAACTTGGACTCAACTTAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
35489550 CGAGTTCGGATGC
66 CGAGTTCGGATGC
35489563 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:35489559 original size:46 final size:46
Alignment explanation
Indices: 35489387--35489559 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
35489377 AACCTGCCCC
* * * *
35489387 TAAGTGAACTCGGATTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
35489433 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * * *
35489481 TCA-CGAACTTGGACTCAACTTAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
35489526 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
35489560 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 57 0.57
47 26 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:35490211 original size:53 final size:53
Alignment explanation
Indices: 35490145--35490250 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
35490135 ATATACTTGT
*
35490145 GACTATTAGGTATTTTTGCCGATTAAGCCCTTTTACTCGTTTTCACTCAAAAC
1 GACTATTAAGTATTTTTGCCGATTAAGCCCTTTTACTCGTTTTCACTCAAAAC
*
35490198 GACTATTAAGTATTTTTGCCGATTAAGCCGTTTTACTCGTTTTCACTCAAAAC
1 GACTATTAAGTATTTTTGCCGATTAAGCCCTTTTACTCGTTTTCACTCAAAAC
35490251 CGAGTAGCAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (53 bp):
GACTATTAAGTATTTTTGCCGATTAAGCCCTTTTACTCGTTTTCACTCAAAAC
Found at i:35492576 original size:19 final size:19
Alignment explanation
Indices: 35492554--35492592 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
35492544 AGAGTAAAAA
*
35492554 AAATCTCTTATTGGTGTAC
1 AAATCTCTTATTGGCGTAC
35492573 AAATCTCTTATTGGCGTAC
1 AAATCTCTTATTGGCGTAC
35492592 A
1 A
35492593 TTGTATGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (19 bp):
AAATCTCTTATTGGCGTAC
Found at i:35493579 original size:28 final size:28
Alignment explanation
Indices: 35493497--35493593 Score: 74
Period size: 29 Copynumber: 3.4 Consensus size: 28
35493487 CATGAATGTG
* * *
35493497 TCCTTTTAACAGAG-TTTGCTACAAGGCA
1 TCCTTTTAACAGAGATAT-CCACAAAGCA
* *
35493525 TTCC-TTTAATAGAGATGGT-CACAAAAGCA
1 -TCCTTTTAACAGAGAT-ATCCAC-AAAGCA
35493554 TCCTTTTAACAGAGATATCCACAAAGACA
1 TCCTTTTAACAGAGATATCCACAAAG-CA
*
35493583 TTCTTTTAACA
1 TCCTTTTAACA
35493594 AAAACAACCA
Statistics
Matches: 55, Mismatches: 7, Indels: 12
0.74 0.09 0.16
Matches are distributed among these distances:
28 19 0.35
29 35 0.64
30 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (28 bp):
TCCTTTTAACAGAGATATCCACAAAGCA
Found at i:35493604 original size:29 final size:29
Alignment explanation
Indices: 35493572--35493637 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
35493562 ACAGAGATAT
**
35493572 CCACAAAGACATTCTTTTAACAAAAACAA
1 CCACAAAGACATTAATTTAACAAAAACAA
* * * *
35493601 CCACAAAGGCTTTAATTTAATAGAAACAA
1 CCACAAAGACATTAATTTAACAAAAACAA
35493630 CCACAAAG
1 CCACAAAG
35493638 GATTTTAACA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.50, C:0.23, G:0.08, T:0.20
Consensus pattern (29 bp):
CCACAAAGACATTAATTTAACAAAAACAA
Found at i:35495716 original size:23 final size:23
Alignment explanation
Indices: 35495689--35495734 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
35495679 ATTTGACAAG
35495689 TATGTAATTTACATGAGATGGTA
1 TATGTAATTTACATGAGATGGTA
*
35495712 TATGTAATTTACATGATATGGTA
1 TATGTAATTTACATGAGATGGTA
35495735 CAGGTATGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.04, G:0.20, T:0.41
Consensus pattern (23 bp):
TATGTAATTTACATGAGATGGTA
Found at i:35497636 original size:29 final size:28
Alignment explanation
Indices: 35497604--35497707 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 28
35497594 AATATGATTT
35497604 GGCCTAATGGGCCATATGAATGAAAATTG
1 GGCCTAATGGGCCATATGAAT-AAAATTG
* * * **
35497633 GGCCTAGTGGGCCATAAGAATATGAGCTG
1 GGCCTAATGGGCCATATGAATA-AAATTG
* *
35497662 GGCC-AGATGGGCCATTTGAATAAGATTG
1 GGCCTA-ATGGGCCATATGAATAAAATTG
*
35497690 GGCCTAGTGGGCCATATG
1 GGCCTAATGGGCCATATG
35497708 CATGTATATA
Statistics
Matches: 58, Mismatches: 14, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
28 18 0.31
29 40 0.69
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.23
Consensus pattern (28 bp):
GGCCTAATGGGCCATATGAATAAAATTG
Found at i:35500163 original size:40 final size:40
Alignment explanation
Indices: 35500119--35500247 Score: 129
Period size: 40 Copynumber: 3.2 Consensus size: 40
35500109 TTATTTGTGA
35500119 ACTTAGTGTGTGATACGACATA-CACTCAGCTATATATGGC
1 ACTTAGTGTGTGATACGACATAGC-CTCAGCTATATATGGC
* * * * *
35500159 ACTTAGTGTGCGATTCGACATAGCTTCGGCTATATGTGGC
1 ACTTAGTGTGTGATACGACATAGCCTCAGCTATATATGGC
* * *
35500199 ACTTATTGTGTGAT-TGTACATAGCTTC-GACTATATATGGC
1 ACTTAGTGTGTGATACG-ACATAGCCTCAG-CTATATATGGC
*
35500239 AGTTAGTGT
1 ACTTAGTGT
35500248 CCGGTTTCAG
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
39 2 0.03
40 72 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (40 bp):
ACTTAGTGTGTGATACGACATAGCCTCAGCTATATATGGC
Found at i:35500262 original size:40 final size:40
Alignment explanation
Indices: 35500147--35500287 Score: 142
Period size: 40 Copynumber: 3.5 Consensus size: 40
35500137 CATACACTCA
*
35500147 GCTATATATGGCACTTAGTGTGC-GATTCGACATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGGTTTC-ACATAGCTTCG
* * * *
35500187 GCTATATGTGGCACTTATTGTGTGATTGT-ACATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGGTT-TCACATAGCTTCG
* * * * *
35500227 ACTATATATGGCAGTTAGTGTCCGGTTTCAGATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCGGTTTCACATAGCTTCG
* *
35500267 GCTATGTACGGCACTTAGTGT
1 GCTATATATGGCACTTAGTGT
35500288 ACAAGATATC
Statistics
Matches: 80, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
39 1 0.01
40 77 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (40 bp):
GCTATATATGGCACTTAGTGTGCGGTTTCACATAGCTTCG
Found at i:35503110 original size:36 final size:36
Alignment explanation
Indices: 35503069--35503139 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
35503059 AAGACCAAGT
*
35503069 CCCTATACATGCCATACTCAAAATGATGAGACTAGC
1 CCCTATACATGCCATACTCAAAATGATAAGACTAGC
* *
35503105 CCCTATACATGTCATATTCAAAATGATAAGACTAG
1 CCCTATACATGCCATACTCAAAATGATAAGACTAG
35503140 GTATACCCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.25
Consensus pattern (36 bp):
CCCTATACATGCCATACTCAAAATGATAAGACTAGC
Found at i:35511274 original size:27 final size:26
Alignment explanation
Indices: 35511239--35511346 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 26
35511229 AGCATGGCTG
* *
35511239 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
35511265 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
35511293 CCATAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
35511320 CCATATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
35511347 TCAGGACGTT
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 49 0.69
28 16 0.23
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:35512837 original size:23 final size:24
Alignment explanation
Indices: 35512762--35512821 Score: 84
Period size: 24 Copynumber: 2.5 Consensus size: 24
35512752 CTAACACTGT
* * * *
35512762 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCTTACATCC
35512786 TCTCCCTTATCAACTCTTACATCC
1 TCTCCCTTATCAACTCTTACATCC
35512810 TCTCCCTTATCA
1 TCTCCCTTATCA
35512822 TTTCTAGATC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.22, C:0.42, G:0.02, T:0.35
Consensus pattern (24 bp):
TCTCCCTTATCAACTCTTACATCC
Found at i:35519126 original size:25 final size:26
Alignment explanation
Indices: 35519050--35519159 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
35519040 AGCATGGCTG
* *
35519050 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
35519076 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
35519104 CCAGAATAGAT-ATGTGGCAGAGCCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
35519129 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
35519156 CCAG
1 CCAG
35519160 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
25 21 0.28
26 8 0.11
27 30 0.41
28 15 0.20
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:35519155 original size:52 final size:54
Alignment explanation
Indices: 35519050--35519159 Score: 161
Period size: 52 Copynumber: 2.1 Consensus size: 54
35519040 AGCATGGCTG
*
35519050 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
35519104 CCAGAATAGAT-ATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
35519156 CCAG
1 CCAG
35519160 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
52 23 0.45
53 18 0.35
54 10 0.20
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:35520611 original size:24 final size:24
Alignment explanation
Indices: 35520572--35520671 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 24
35520562 CCAACATTGT
* *
35520572 TCTCCCTAATCTGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
35520596 TCTCCCTTATCAGCTCCTAGATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
35520620 TCTCCCTTATTAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
35520644 TCTCCCTTATCA-CTCCTAGATCC
1 TCTCCCTTATCAGCTCCTAAATCC
35520667 TCTCC
1 TCTCC
35520672 TGACAGACTT
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
23 15 0.22
24 54 0.78
ACGTcount: A:0.18, C:0.42, G:0.05, T:0.35
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:35522512 original size:83 final size:83
Alignment explanation
Indices: 35522363--35522616 Score: 472
Period size: 83 Copynumber: 3.1 Consensus size: 83
35522353 TCACTTTTAC
* * * *
35522363 TAAACTTAGCATACAACTGCTTGTCTCTCAAAGTTTGCAAAACAGTTCTCAAGTGTTCAGCATGC
1 TAAATTTAGAATACAACTGCTTGTCTCTAAAAGTTTGCAAAATAGTTCTCAAGTGTTCAGCATGC
35522428 TCGGATTCATCACAAGAA
66 TCGGATTCATCACAAGAA
35522446 TAAATTTAGAATACAACTGCTTGTCTCTAAAAGTTTGCAAAATAGTTCTCAAGTGTTCAGCATGC
1 TAAATTTAGAATACAACTGCTTGTCTCTAAAAGTTTGCAAAATAGTTCTCAAGTGTTCAGCATGC
35522511 TCGGATTCATCACAAGAA
66 TCGGATTCATCACAAGAA
35522529 TAAATTTAGAATACAACTGCTTGTCTCTAAAAGTTTGCAAAATAGTTCTCAAGTGTTCAGCATGC
1 TAAATTTAGAATACAACTGCTTGTCTCTAAAAGTTTGCAAAATAGTTCTCAAGTGTTCAGCATGC
35522594 TCGGATTCATCACAAGAA
66 TCGGATTCATCACAAGAA
35522612 TAAAT
1 TAAAT
35522617 CAATATGTCA
Statistics
Matches: 167, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 167 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (83 bp):
TAAATTTAGAATACAACTGCTTGTCTCTAAAAGTTTGCAAAATAGTTCTCAAGTGTTCAGCATGC
TCGGATTCATCACAAGAA
Found at i:35531604 original size:20 final size:19
Alignment explanation
Indices: 35531575--35531614 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
35531565 TCCCTTATAG
*
35531575 TTTGAAAAATTTTCTAAGT
1 TTTGAAAAATTTCCTAAGT
35531594 TTTGTAAAAATTTCCTAAGT
1 TTTG-AAAAATTTCCTAAGT
35531614 T
1 T
35531615 ATCAGTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.35, C:0.07, G:0.10, T:0.47
Consensus pattern (19 bp):
TTTGAAAAATTTCCTAAGT
Found at i:35532747 original size:12 final size:12
Alignment explanation
Indices: 35532717--35532751 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
35532707 GTGTAGATTG
35532717 AATTAACTAAAA
1 AATTAACTAAAA
*
35532729 ACCTTAACTAAAA
1 A-ATTAACTAAAA
35532742 AATTAACTAA
1 AATTAACTAA
35532752 GTATGTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (12 bp):
AATTAACTAAAA
Found at i:35537755 original size:50 final size:51
Alignment explanation
Indices: 35537680--35537909 Score: 219
Period size: 50 Copynumber: 4.6 Consensus size: 51
35537670 TGAGTACACG
*
35537680 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAT-ACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAACATGACTGTTAAGTCACA
* * * ** *
35537730 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-AC-ATGACTGTTAAGTCACA
* * * *
35537781 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-GA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAACATGACT-GTTAAGTCACA
* * *
35537831 TGTGTAGTACTAAGTGCAGGCTACTAC--GT-AC-TGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAACAT-GACTGTTAAGTCACA
*
35537878 TGTGTAGTACTAAGTGCAGGCTACTATGTGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA
35537910 TCAGATAGCT
Statistics
Matches: 151, Mismatches: 17, Indels: 24
0.79 0.09 0.12
Matches are distributed among these distances:
47 33 0.22
48 8 0.05
49 5 0.03
50 64 0.42
51 34 0.23
52 4 0.03
53 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTAACATGACTGTTAAGTCACA
Found at i:35537851 original size:101 final size:96
Alignment explanation
Indices: 35537676--35537915 Score: 302
Period size: 101 Copynumber: 2.4 Consensus size: 96
35537666 ATTGTGAGTA
* * * *
35537676 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAACATACTGTTAAGTCGCATGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGTGAAGTCACATGTGTAGTACT
35537741 AAGTGCAGGCTACTATGCGTACT-CAATGACTTCGAT
65 AAGTGCAGGCTACTA--CGTACTGCAATG--TT-GAT
* *
35537777 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GTGAAGTCACATGTGTAGTACT
* * *
35537842 AAGTGCAGGCTACTACGTACTGGATTGTTGGT
65 AAGTGCAGGCTACTACGTACTGCAATGTTGAT
* * *
35537874 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
35537916 AGCTTCGGCT
Statistics
Matches: 125, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
97 41 0.33
98 2 0.02
99 6 0.05
100 4 0.03
101 72 0.58
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (96 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGTGAAGTCACATGTGTAGTACTA
AGTGCAGGCTACTACGTACTGCAATGTTGAT
Found at i:35543955 original size:30 final size:30
Alignment explanation
Indices: 35543921--35543981 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
35543911 TTCCCGAGCC
35543921 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
35543951 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
35543981 T
1 T
35543982 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:35544034 original size:15 final size:15
Alignment explanation
Indices: 35544014--35544044 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
35544004 GTACATTAAT
35544014 TAAATAAGTAAAATA
1 TAAATAAGTAAAATA
35544029 TAAATAAGTAAAATA
1 TAAATAAGTAAAATA
35544044 T
1 T
35544045 GATATTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (15 bp):
TAAATAAGTAAAATA
Found at i:35547990 original size:19 final size:20
Alignment explanation
Indices: 35547968--35548005 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
35547958 AATTTCCCCA
*
35547968 AATCCCTAACT-TTTCTCCT
1 AATCCCTAAATATTTCTCCT
35547987 AATCCCTAAATATTTCTCC
1 AATCCCTAAATATTTCTCC
35548006 GAATAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.39
Consensus pattern (20 bp):
AATCCCTAAATATTTCTCCT
Found at i:35551846 original size:9 final size:9
Alignment explanation
Indices: 35551834--35552009 Score: 75
Period size: 9 Copynumber: 20.0 Consensus size: 9
35551824 ATATCATATA
35551834 ATAACTTAC
1 ATAACTTAC
*
35551843 ATAACTCAC
1 ATAACTTAC
35551852 -TAAACTTAC
1 AT-AACTTAC
35551861 ATAA--TAC
1 ATAACTTAC
* *
35551868 ATAA-ATAT
1 ATAACTTAC
*
35551876 ATATCATATA-
1 ATAAC-T-TAC
35551886 ATAACTTAC
1 ATAACTTAC
*
35551895 ATAACTTAT
1 ATAACTTAC
*
35551904 ATACCTTAC
1 ATAACTTAC
*
35551913 A-AA-ATAC
1 ATAACTTAC
* *
35551920 ATAA-ATAT
1 ATAACTTAC
* *
35551928 ATATCATATC
1 ATAACTTA-C
35551938 ATAACTTAC
1 ATAACTTAC
*
35551947 ATACCTTAC
1 ATAACTTAC
* *
35551956 ATAAATGTAT
1 ATAACT-TAC
* *
35551966 ATCA-TAAC
1 ATAACTTAC
35551974 ATAACTTAC
1 ATAACTTAC
35551983 ATAACTTAC
1 ATAACTTAC
35551992 A-AAGCTTAC
1 ATAA-CTTAC
*
35552001 TTAACTTAC
1 ATAACTTAC
35552010 GTAATACATA
Statistics
Matches: 127, Mismatches: 26, Indels: 28
0.70 0.14 0.15
Matches are distributed among these distances:
7 11 0.09
8 23 0.18
9 73 0.57
10 18 0.14
11 2 0.02
ACGTcount: A:0.47, C:0.19, G:0.01, T:0.34
Consensus pattern (9 bp):
ATAACTTAC
Found at i:35551874 original size:52 final size:52
Alignment explanation
Indices: 35551817--35551949 Score: 214
Period size: 52 Copynumber: 2.6 Consensus size: 52
35551807 ATCTTAATGT
*
35551817 TAAATATATATCATATAATAACTTACATAACTCACTA-AACTTACATAATACA
1 TAAATATATATCATATAATAACTTACATAACTCA-TATAACTTACAAAATACA
* *
35551869 TAAATATATATCATATAATAACTTACATAACTTATATACCTTACAAAATACA
1 TAAATATATATCATATAATAACTTACATAACTCATATAACTTACAAAATACA
*
35551921 TAAATATATATCATATCATAACTTACATA
1 TAAATATATATCATATAATAACTTACATA
35551950 CCTTACATAA
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
51 2 0.03
52 74 0.97
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.35
Consensus pattern (52 bp):
TAAATATATATCATATAATAACTTACATAACTCATATAACTTACAAAATACA
Found at i:35551958 original size:36 final size:36
Alignment explanation
Indices: 35551917--35551992 Score: 125
Period size: 36 Copynumber: 2.1 Consensus size: 36
35551907 CCTTACAAAA
* *
35551917 TACATAAATATATATCATATCATAACTTACATACCT
1 TACATAAATATATATCATAACATAACTTACATAACT
*
35551953 TACATAAATGTATATCATAACATAACTTACATAACT
1 TACATAAATATATATCATAACATAACTTACATAACT
35551989 TACA
1 TACA
35551993 AAGCTTACTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.34
Consensus pattern (36 bp):
TACATAAATATATATCATAACATAACTTACATAACT
Found at i:35557111 original size:13 final size:14
Alignment explanation
Indices: 35557095--35557123 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
35557085 TTATAAATAT
35557095 TTATAAT-GTTTAA
1 TTATAATAGTTTAA
35557108 TTATAATAGTTTAA
1 TTATAATAGTTTAA
35557122 TT
1 TT
35557124 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (14 bp):
TTATAATAGTTTAA
Found at i:35557572 original size:21 final size:22
Alignment explanation
Indices: 35557534--35557585 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
35557524 CTTAGAGTGG
* *
35557534 AGGCAGCAG-AGAGGGAGGCAG
1 AGGCAGCAGCAGAGAGAGGCAA
*
35557555 CGGCAGCAGCA-AGAGAGGCAA
1 AGGCAGCAGCAGAGAGAGGCAA
35557576 AGGCAGCAGC
1 AGGCAGCAGC
35557586 GATGGCAGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.35, C:0.21, G:0.44, T:0.00
Consensus pattern (22 bp):
AGGCAGCAGCAGAGAGAGGCAA
Found at i:35557719 original size:21 final size:21
Alignment explanation
Indices: 35557687--35557756 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
35557677 AGAGCGGAGG
35557687 CAGCAG-AGAGGGAGGCAACGA
1 CAGCAGCA-AGGGAGGCAACGA
* * *
35557708 CAGCGGCAAGGGAGGTAGCGA
1 CAGCAGCAAGGGAGGCAACGA
* * *
35557729 CAGCAGCAAGAGAGGCAAAGG
1 CAGCAGCAAGGGAGGCAACGA
35557750 CAGCAGC
1 CAGCAGC
35557757 GATGGCAGTA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
21 38 0.97
22 1 0.03
ACGTcount: A:0.36, C:0.21, G:0.41, T:0.01
Consensus pattern (21 bp):
CAGCAGCAAGGGAGGCAACGA
Found at i:35558199 original size:43 final size:43
Alignment explanation
Indices: 35558152--35558245 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
35558142 AAAAAACATT
*
35558152 GCTAAAAGCCATGACTTTTAGCGGCGCTTTTCCCACAAACGCC
1 GCTAAAAGCCATGACTTTTAGCAGCGCTTTTCCCACAAACGCC
* **
35558195 GCTAAAAGCCATGACTTTTAGCAGCTCTTTTCTTACAAACGCC
1 GCTAAAAGCCATGACTTTTAGCAGCGCTTTTCCCACAAACGCC
35558238 GCTAAAAG
1 GCTAAAAG
35558246 TCTTGATCTC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (43 bp):
GCTAAAAGCCATGACTTTTAGCAGCGCTTTTCCCACAAACGCC
Found at i:35559793 original size:40 final size:39
Alignment explanation
Indices: 35559695--35559957 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
35559685 TCCTCGTTCA
* * * *
35559695 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
35559734 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
35559773 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
35559813 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
35559853 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
35559893 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
35559934 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
35559958 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:35559917 original size:120 final size:119
Alignment explanation
Indices: 35559695--35559957 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
35559685 TCCTCGTTCA
* * *
35559695 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
35559760 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
35559813 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
35559878 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
35559934 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
35559958 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:35559966 original size:41 final size:41
Alignment explanation
Indices: 35559889--35559966 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
35559879 TTTGTATCTC
* * *
35559889 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
35559930 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
35559967 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:35567738 original size:40 final size:40
Alignment explanation
Indices: 35567640--35567982 Score: 424
Period size: 40 Copynumber: 8.6 Consensus size: 40
35567630 TCCTCGTTCA
* * * * *
35567640 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
35567679 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
35567719 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
35567759 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
35567799 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
35567839 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
35567879 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
35567919 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
35567959 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
35567983 CAGCATTCAA
Statistics
Matches: 275, Mismatches: 23, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
39 39 0.14
40 224 0.81
41 12 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:35567991 original size:41 final size:41
Alignment explanation
Indices: 35567914--35567991 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
35567904 TTTGTATCTC
* * *
35567914 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
35567955 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
35567992 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:35570268 original size:41 final size:43
Alignment explanation
Indices: 35570190--35570287 Score: 128
Period size: 42 Copynumber: 2.3 Consensus size: 43
35570180 TCCTAGACAT
* *
35570190 GGTCTTACATGTAATCAAACATCGATGCCATTGTCCC-AACAG
1 GGTCTTACATGAAATCAAACATCGATGCCAATGTCCCAAACAG
* * * *
35570232 GGTCTTACACGAAATCAGATAT-GATGCCAATGTCCCAAACAT
1 GGTCTTACATGAAATCAAACATCGATGCCAATGTCCCAAACAG
35570274 GGTCTTACATGAAA
1 GGTCTTACATGAAA
35570288 AACAGAAGTC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 13 0.27
42 35 0.73
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAACATCGATGCCAATGTCCCAAACAG
Found at i:35575961 original size:12 final size:12
Alignment explanation
Indices: 35575943--35575975 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
35575933 ACCACACGCA
35575943 CGTGTGCCAG-C
1 CGTGTGCCAGTC
35575954 CGGTGTGCCAGTC
1 C-GTGTGCCAGTC
35575967 CGTGTGCCA
1 CGTGTGCCA
35575976 CACACGACCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 1 0.05
12 17 0.85
13 2 0.10
ACGTcount: A:0.09, C:0.33, G:0.36, T:0.21
Consensus pattern (12 bp):
CGTGTGCCAGTC
Found at i:35579982 original size:42 final size:42
Alignment explanation
Indices: 35579923--35580008 Score: 127
Period size: 42 Copynumber: 2.0 Consensus size: 42
35579913 GTATGTGCTA
* * * * *
35579923 TCATGTAAGACCATGTCTGGGATATGGCGTTGATATGAGATT
1 TCATGAAAGACCATGTCTGGGACATGACATTGAAATGAGATT
35579965 TCATGAAAGACCATGTCTGGGACATGACATTGAAATGAGATT
1 TCATGAAAGACCATGTCTGGGACATGACATTGAAATGAGATT
35580007 TC
1 TC
35580009 TCTGGGATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (42 bp):
TCATGAAAGACCATGTCTGGGACATGACATTGAAATGAGATT
Found at i:35587527 original size:42 final size:42
Alignment explanation
Indices: 35587479--35587633 Score: 157
Period size: 42 Copynumber: 3.7 Consensus size: 42
35587469 CAAGTGCTAT
* * * *
35587479 CATGTAAGACCATATCTGGGATATGGCATTGATATGAGATTT
1 CATGTAAGACCACATCTGGGACATGGCATCGATATGAGATTC
* * * *
35587521 CGTGTAAGACCACGTCTAGGACATGGCATCGAAATGAGATTC
1 CATGTAAGACCACATCTGGGACATGGCATCGATATGAGATTC
* * * * * *
35587563 CATATAAAACCATATCTGGGATATGGCATCGATGTGAGATCC
1 CATGTAAGACCACATCTGGGACATGGCATCGATATGAGATTC
* * *
35587605 CTTGTAAGACCACGTCTGGGGCATGGCAT
1 CATGTAAGACCACATCTGGGACATGGCAT
35587634 TGGCACCTTA
Statistics
Matches: 88, Mismatches: 25, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (42 bp):
CATGTAAGACCACATCTGGGACATGGCATCGATATGAGATTC
Found at i:35596596 original size:33 final size:34
Alignment explanation
Indices: 35596558--35596638 Score: 85
Period size: 34 Copynumber: 2.4 Consensus size: 34
35596548 GCCTAAGCCC
* *
35596558 ATTCAGATAACAGTGATACTGGGCC-AGAGCCTT
1 ATTCAGATAACAGTGAAACTGGGCCTAGACCCTT
* * * *
35596591 TTTCAGATTACA-TTAAACTGGGCCTTAGCCCCTT
1 ATTCAGATAACAGTGAAACTGGGCC-TAGACCCTT
35596625 ATTCAGATAACAGT
1 ATTCAGATAACAGT
35596639 ATGGCCCATA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 10 0.27
33 10 0.27
34 16 0.43
35 1 0.03
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (34 bp):
ATTCAGATAACAGTGAAACTGGGCCTAGACCCTT
Found at i:35598284 original size:24 final size:24
Alignment explanation
Indices: 35598245--35598350 Score: 149
Period size: 24 Copynumber: 4.4 Consensus size: 24
35598235 GCCGGCCAAC
* *
35598245 TCCTGCTCCTTGATCAGATCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
*
35598270 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
35598294 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
35598318 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
35598342 TCTTCTCCT
1 TCCTCTCCT
35598351 GACAGCCTTT
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
24 71 0.96
25 3 0.04
ACGTcount: A:0.20, C:0.38, G:0.06, T:0.37
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:35612370 original size:13 final size:13
Alignment explanation
Indices: 35612352--35612379 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
35612342 CACAACCGTT
35612352 TGTCTCAATCGTG
1 TGTCTCAATCGTG
35612365 TGTCTCAATCGTG
1 TGTCTCAATCGTG
35612378 TG
1 TG
35612380 GAGGACACGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.21, G:0.25, T:0.39
Consensus pattern (13 bp):
TGTCTCAATCGTG
Found at i:35616549 original size:27 final size:27
Alignment explanation
Indices: 35616508--35616563 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
35616498 ATCTCATATC
* *
35616508 TGTAGGCTAGTATTACTAAAATGCCCT
1 TGTAGGCTAGAATTACTAAAATCCCCT
*
35616535 TGTAGGGTAGAATTACTAAAATCCCCT
1 TGTAGGCTAGAATTACTAAAATCCCCT
35616562 TG
1 TG
35616564 GTTTATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (27 bp):
TGTAGGCTAGAATTACTAAAATCCCCT
Found at i:35616575 original size:27 final size:27
Alignment explanation
Indices: 35616545--35616695 Score: 189
Period size: 27 Copynumber: 5.6 Consensus size: 27
35616535 TGTAGGGTAG
* * *
35616545 AATTACTAAAAT-CCCCTTGGTTTATAA
1 AATTACCAAAATACCCC-TAGTTTGTAA
* *
35616572 AATTGCCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
35616599 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
35616626 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
35616653 AATTACCAAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
*
35616680 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
35616696 TCGACCTATA
Statistics
Matches: 111, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.04
27 101 0.91
28 6 0.05
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:35616696 original size:27 final size:27
Alignment explanation
Indices: 35616569--35616724 Score: 165
Period size: 27 Copynumber: 5.8 Consensus size: 27
35616559 CCTTGGTTTA
* **
35616569 TAAAATTGCCAAAATACCC-CTGGTTTG
1 TAAAATTACCAAAATACCCTC-GACTTG
* *
35616596 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTCGA-CTTG
* *
35616623 TAAAATTACCAAAATACCC-CTAATTTG
1 TAAAATTACCAAAATACCCTC-GACTTG
35616650 TAAAATTACCAAAATACCCTCGACTTG
1 TAAAATTACCAAAATACCCTCGACTTG
* * *
35616677 TAAAATTACCAAAGTACCCTCGACCTA
1 TAAAATTACCAAAATACCCTCGACTTG
*
35616704 TAAAATTACCAAAGTACCCTC
1 TAAAATTACCAAAATACCCTC
35616725 AATTTATAGA
Statistics
Matches: 117, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
27 115 0.98
28 2 0.02
ACGTcount: A:0.40, C:0.25, G:0.08, T:0.27
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGACTTG
Found at i:35616708 original size:81 final size:81
Alignment explanation
Indices: 35616565--35616740 Score: 205
Period size: 81 Copynumber: 2.2 Consensus size: 81
35616555 ATCCCCTTGG
* ** * ** *
35616565 TTTATAAAATTGCCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATT
1 TTTATAAAATTACCAAAATACCCCTGACTTGTAAAATTACCAAAATACCCCGAGCCTATAAAATT
35616630 ACCAAAATACCC-CTAA
66 ACCAAAATACCCTC-AA
* *
35616646 TTTGTAAAATTACCAAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTCGA-CCTATAAAA
1 TTTATAAAATTACCAAAATACCCCT-GACTTGTAAAATTACCAAAATACCC-CGAGCCTATAAAA
*
35616709 TTACCAAAGTACCCTCAA
64 TTACCAAAATACCCTCAA
*
35616727 TTTATAGAATTACC
1 TTTATAAAATTACC
35616741 GTTTTACCCT
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
80 4 0.05
81 73 0.91
82 3 0.04
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.29
Consensus pattern (81 bp):
TTTATAAAATTACCAAAATACCCCTGACTTGTAAAATTACCAAAATACCCCGAGCCTATAAAATT
ACCAAAATACCCTCAA
Found at i:35616753 original size:54 final size:54
Alignment explanation
Indices: 35616596--35616740 Score: 141
Period size: 54 Copynumber: 2.7 Consensus size: 54
35616586 CCCTGGTTTG
** * * * ** *
35616596 TAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAATTTG
1 TAAAATTACCAAAATACCCTC-AACTTATAAAATTACCAAAGTACCCTC-GACCTA
* *
35616650 TAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGACCTA
1 TAAAATTACCAAAATACCCTCAACTTATAAAATTACCAAAGTACCCTCGACCTA
* * *
35616704 TAAAATTACCAAAGTACCCTCAATTTATAGAATTACC
1 TAAAATTACCAAAATACCCTCAACTTATAAAATTACC
35616741 GTTTTACCCT
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
54 74 0.97
55 2 0.03
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCTCAACTTATAAAATTACCAAAGTACCCTCGACCTA
Found at i:35616785 original size:27 final size:27
Alignment explanation
Indices: 35616755--35616843 Score: 142
Period size: 27 Copynumber: 3.3 Consensus size: 27
35616745 TACCCTCGAN
35616755 AAATACCCTTGGTTTGTAAAATTACCA
1 AAATACCCTTGGTTTGTAAAATTACCA
*
35616782 AAATACCCCTGGTTTGTAAAATTACCA
1 AAATACCCTTGGTTTGTAAAATTACCA
* **
35616809 AAATGCCCTTGGTTTACAAAATTACCA
1 AAATACCCTTGGTTTGTAAAATTACCA
35616836 AAATACCC
1 AAATACCC
35616844 CTGTAGCGTA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATACCCTTGGTTTGTAAAATTACCA
Found at i:35616858 original size:27 final size:27
Alignment explanation
Indices: 35616828--35617009 Score: 247
Period size: 27 Copynumber: 6.7 Consensus size: 27
35616818 TGGTTTACAA
* *
35616828 AATTACCAAAATACCCCTGTAGCGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
35616855 AATTACCGGAATACCCCTGTAGGTTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
35616882 AATTATCGAATTACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
35616909 AATAACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
35616936 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
35616963 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
35616990 AATTATCGCAATACCCCTGT
1 AATTACCGAAATACCCCTGT
35617010 CCTTGTGGGG
Statistics
Matches: 137, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:35616859 original size:54 final size:54
Alignment explanation
Indices: 35616755--35616870 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
35616745 TACCCTCGAN
** **
35616755 AAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCA
1 AAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTGCGTAAAATTACCA
* * *
35616809 AAATGCCCTTGGTTTACAAAATTACCAAAATACCCCT-GTAGCGTAGAATTACCG
1 AAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGT-GCGTAAAATTACCA
*
35616863 GAATACCC
1 AAATACCC
35616871 CTGTAGGTTA
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 2 0.04
54 50 0.96
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (54 bp):
AAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTGCGTAAAATTACCA
Found at i:35616870 original size:121 final size:119
Alignment explanation
Indices: 35616646--35616870 Score: 249
Period size: 121 Copynumber: 1.9 Consensus size: 119
35616636 ATACCCCTAA
* *
35616646 TTTGTAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGACCTATAAAATT
1 TTTGTAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCTCGACCTACAAAATT
* * ***
35616711 ACCAAAGTACCCTCAATTTATAGAATTACCGTTTTACCCTCGANAAATACCCTTGG
66 ACCAAAATACCCTC-ATGTATAGAATTACCGGAATACCCTCGA-AAATACCCTTGG
** * * ***
35616767 TTTGTAAAATTACCAAAATACCC-CTGGTTTGTAAAATTACCAAAATGCCCTTGGTTTACAAAAT
1 TTTGTAAAATTACCAAAATACCCTC-GACTTGTAAAATTACCAAAATACCCTCGACCTACAAAAT
35616831 TACCAAAATACCC-C-TGTAGCGTAGAATTACCGGAATACCC
65 TACCAAAATACCCTCATGTA---TAGAATTACCGGAATACCC
35616871 CTGTAGGTTA
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
118 3 0.03
120 2 0.02
121 81 0.94
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.28
Consensus pattern (119 bp):
TTTGTAAAATTACCAAAATACCCTCGACTTGTAAAATTACCAAAATACCCTCGACCTACAAAATT
ACCAAAATACCCTCATGTATAGAATTACCGGAATACCCTCGAAAATACCCTTGG
Found at i:35617469 original size:22 final size:22
Alignment explanation
Indices: 35617417--35617481 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
35617407 GCCAATTATT
* *
35617417 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
35617439 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
35617461 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
35617482 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:35617670 original size:27 final size:27
Alignment explanation
Indices: 35617640--35617723 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
35617630 ATTCTGTTAA
* *
35617640 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
35617667 GTGGCTGTGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
35617694 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
35617721 GTG
1 GTG
35617724 ACCCTATCAC
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.16
27 36 0.71
28 7 0.14
ACGTcount: A:0.15, C:0.23, G:0.25, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:35617734 original size:27 final size:26
Alignment explanation
Indices: 35617649--35617740 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 26
35617639 AGTGGCTTTG
* * ** *
35617649 CCACATTATCTGTTTCTGGTGGCTGTG
1 CCACAATATCTG-TTCTGGTGACCCTA
* * *
35617676 CCACAAATATCTGTTCTGGTGGCTCTG
1 CCAC-AATATCTGTTCTGGTGACCCTA
35617703 CCACAATATCTGTATCTGGTGACCCTA
1 CCACAATATCTGT-TCTGGTGACCCTA
*
35617730 TCACAATATCT
1 CCACAATATCT
35617741 AATATCTGAG
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 9 0.16
27 41 0.72
28 7 0.12
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (26 bp):
CCACAATATCTGTTCTGGTGACCCTA
Found at i:35617909 original size:6 final size:6
Alignment explanation
Indices: 35617878--35617970 Score: 77
Period size: 6 Copynumber: 15.3 Consensus size: 6
35617868 TTGCATTCAC
* *
35617878 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATT-TG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
35617926 -TTAGCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
35617971 AATGTTTCTT
Statistics
Matches: 70, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
5 10 0.14
6 50 0.71
7 7 0.10
8 3 0.04
ACGTcount: A:0.18, C:0.15, G:0.16, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:35617916 original size:30 final size:31
Alignment explanation
Indices: 35617878--35617949 Score: 110
Period size: 30 Copynumber: 2.4 Consensus size: 31
35617868 TTGCATTCAC
*
35617878 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
35617909 ATT-TGATTCTGATTCTGTTAGCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
35617939 ATTCTGATTCT
1 ATTCTGATTCT
35617950 CATTTTGATT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 27 0.73
31 10 0.27
ACGTcount: A:0.18, C:0.15, G:0.17, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:35618951 original size:6 final size:6
Alignment explanation
Indices: 35618922--35619000 Score: 61
Period size: 6 Copynumber: 12.5 Consensus size: 6
35618912 GGATCATTGA
* * * * *
35618922 TTTTAT TTTTTT TTCTTTT ATTTTAT TTTTAT GTTTAT GTTTAT TTCTAT
1 TTTTAT TTTTAT TT-TTAT -TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
35618972 TTTTAGT TGTTT-T GTTTTAT TTTTAT TTT
1 TTTTA-T T-TTTAT -TTTTAT TTTTAT TTT
35619001 CTTGTACTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
6 45 0.74
7 11 0.18
8 5 0.08
ACGTcount: A:0.13, C:0.03, G:0.06, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:35619000 original size:5 final size:5
Alignment explanation
Indices: 35618921--35618974 Score: 54
Period size: 5 Copynumber: 10.0 Consensus size: 5
35618911 AGGATCATTG
* *
35618921 ATTTT ATTTT TTTTT CTTTT ATTTT ATTTTT ATGTTT ATGTTT ATTTCT
1 ATTTT ATTTT ATTTT ATTTT ATTTT A-TTTT AT-TTT AT-TTT ATTT-T
35618970 ATTTT
1 ATTTT
35618975 TAGTTGTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
5 22 0.51
6 21 0.49
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:35619116 original size:46 final size:46
Alignment explanation
Indices: 35619066--35619158 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
35619056 TCAAGTTGTA
* *
35619066 ATCCCTTAATCTTTTTTCTTATTTGCGTTTATTTTCTTATTAGTTT
1 ATCCCTTAATCTTCTTTCTTATTTGCATTTATTTTCTTATTAGTTT
35619112 ATCCCTTAATCTTCTTTCTTATTTGCATTTATTTTCTTATTAGTTT
1 ATCCCTTAATCTTCTTTCTTATTTGCATTTATTTTCTTATTAGTTT
35619158 A
1 A
35619159 CTTGGAATCC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.17, C:0.16, G:0.05, T:0.61
Consensus pattern (46 bp):
ATCCCTTAATCTTCTTTCTTATTTGCATTTATTTTCTTATTAGTTT
Found at i:35626757 original size:20 final size:20
Alignment explanation
Indices: 35626724--35626764 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
35626714 CAACTTGCAG
** *
35626724 CATACCATTGTCTTCCATAA
1 CATACCATAATCTTCAATAA
35626744 CATACCATAATCTTCAATAA
1 CATACCATAATCTTCAATAA
35626764 C
1 C
35626765 TTTAACATGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.29, G:0.02, T:0.32
Consensus pattern (20 bp):
CATACCATAATCTTCAATAA
Found at i:35626912 original size:43 final size:42
Alignment explanation
Indices: 35626850--35626971 Score: 176
Period size: 43 Copynumber: 2.9 Consensus size: 42
35626840 TAGCAGACCA
*
35626850 ATGCCATATCCCAGATATGGTCTTACATGAAATCTCA-AGTCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATA-TCG
* *
35626892 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
35626935 ATGCCATATCCCAGATATGGTCTTACACGTAAA-CTCA
1 ATGCCATATCCCAGATATGGTCTTACACG-AAATCTCA
35626972 AATAACCCCA
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
42 31 0.43
43 40 0.56
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:35629898 original size:31 final size:31
Alignment explanation
Indices: 35629862--35629931 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
35629852 TTTAGGACAT
35629862 GCCCGTGTGGGTAGGCCATGTGGTCACACAC
1 GCCCGTGTGGGTAGGCCATGTGGTCACACAC
*
35629893 GCCCGTGTGGGTAGGCCGTGTGGTCACACAC
1 GCCCGTGTGGGTAGGCCATGTGGTCACACAC
35629924 GCCCGTGT
1 GCCCGTGT
35629932 CCCTAACCCG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.13, C:0.30, G:0.37, T:0.20
Consensus pattern (31 bp):
GCCCGTGTGGGTAGGCCATGTGGTCACACAC
Found at i:35629943 original size:31 final size:31
Alignment explanation
Indices: 35629880--35629944 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
35629870 GGGTAGGCCA
*** **
35629880 TGTGGTCACACACGCCCGTGTGGGTAGGCCG
1 TGTGGTCACACACGCCCGTGTCCCTAACCCG
35629911 TGTGGTCACACACGCCCGTGTCCCTAACCCG
1 TGTGGTCACACACGCCCGTGTCCCTAACCCG
35629942 TGT
1 TGT
35629945 AACTCTCTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.14, C:0.34, G:0.31, T:0.22
Consensus pattern (31 bp):
TGTGGTCACACACGCCCGTGTCCCTAACCCG
Found at i:35634528 original size:79 final size:81
Alignment explanation
Indices: 35634392--35634576 Score: 245
Period size: 79 Copynumber: 2.3 Consensus size: 81
35634382 TCGAATGATG
*
35634392 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
35634456 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
35634471 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
35634533 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
35634551 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
35634577 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.63
80 33 0.35
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:35634590 original size:40 final size:40
Alignment explanation
Indices: 35634393--35634576 Score: 225
Period size: 40 Copynumber: 4.6 Consensus size: 40
35634383 CGAATGATGT
* * * *
35634393 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
35634433 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
35634473 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
35634511 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
35634552 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
35634577 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
39 36 0.28
40 82 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:35634598 original size:79 final size:79
Alignment explanation
Indices: 35634445--35634609 Score: 219
Period size: 79 Copynumber: 2.1 Consensus size: 79
35634435 GGACTAAGAT
* **
35634445 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
35634510 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
35634524 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
35634587 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
35634603 CCGAAGG
1 CCGAAGG
35634610 TACGTGATTT
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.64
80 25 0.33
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:35640884 original size:40 final size:40
Alignment explanation
Indices: 35640786--35641048 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
35640776 TCCTCGTTCA
* * * ** *
35640786 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
35640825 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
35640865 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
35640905 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
35640945 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
35640985 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
35641025 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
35641049 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:35646915 original size:41 final size:41
Alignment explanation
Indices: 35646864--35646958 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
35646854 TGCGGATACT
35646864 TGACAGCTTGTGTGAGCAACACTGTGTAGCTACG-TCTTGAC
1 TGACAGCTTGTGTGAGCAACACTGTGTAGCTACGTTC-TGAC
* *
35646905 TGACAGCTTGTGTGAGCAGCACTGTGTAGCTATGTTCTGAC
1 TGACAGCTTGTGTGAGCAACACTGTGTAGCTACGTTCTGAC
*
35646946 TAACAGCTTGTGT
1 TGACAGCTTGTGT
35646959 AAACAGGCCT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
41 48 0.96
42 2 0.04
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (41 bp):
TGACAGCTTGTGTGAGCAACACTGTGTAGCTACGTTCTGAC
Found at i:35652052 original size:47 final size:46
Alignment explanation
Indices: 35651981--35652246 Score: 209
Period size: 47 Copynumber: 5.7 Consensus size: 46
35651971 TTACTTGTAC
* *
35651981 GCCAGTGTAAGACATGTTTGGGACATGCATCGGCGTAGAGATGAGT
1 GCCAGTATAAGACATGTCTGGGACATGCATCGGCGTAGAGATGAGT
*
35652027 GCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATAGAGATGAGT
1 GCCAGTATAAGA-CATGTCTGGGACAT-GCATCGGCGTAGAGATGAGT
* * * *
35652075 GCCAGTATAAGACATGTCTGGGGCATGCATTGGCCTCGATGATGA-T
1 GCCAGTATAAGACATGTCTGGGACATGCATCGGCGTAGA-GATGAGT
* * ** * * *
35652121 AGCCAATGTAAGATGTGTCTGGGACACGCATCAGC-TA-AGA-GTTGT
1 -GCCAGTATAAGACATGTCTGGGACATGCATCGGCGTAGAGATG-AGT
* * * * * *
35652166 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCATGT-GTATATGAGA
1 GCCAGTATAAGACATGTCTGGGACATGCATCGGC--GTAG-AGATGAGT
* *
35652214 GCTAGTATAAGACCATGTATGGGACATGGCATC
1 GCCAGTATAAGA-CATGTCTGGGACAT-GCATC
35652247 AACCTCGATG
Statistics
Matches: 178, Mismatches: 28, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 30 0.17
45 2 0.01
46 23 0.13
47 58 0.33
48 45 0.25
49 14 0.08
50 5 0.03
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (46 bp):
GCCAGTATAAGACATGTCTGGGACATGCATCGGCGTAGAGATGAGT
Found at i:35652480 original size:55 final size:55
Alignment explanation
Indices: 35652419--35652580 Score: 324
Period size: 55 Copynumber: 2.9 Consensus size: 55
35652409 AATGAGTAAG
35652419 TTAAGTTTAAACTTACCTTTGAGTTATGAGCATGATGACTAATGGTTAAATTGTA
1 TTAAGTTTAAACTTACCTTTGAGTTATGAGCATGATGACTAATGGTTAAATTGTA
35652474 TTAAGTTTAAACTTACCTTTGAGTTATGAGCATGATGACTAATGGTTAAATTGTA
1 TTAAGTTTAAACTTACCTTTGAGTTATGAGCATGATGACTAATGGTTAAATTGTA
35652529 TTAAGTTTAAACTTACCTTTGAGTTATGAGCATGATGACTAATGGTTAAATT
1 TTAAGTTTAAACTTACCTTTGAGTTATGAGCATGATGACTAATGGTTAAATT
35652581 ATCGTTGTAT
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 107 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (55 bp):
TTAAGTTTAAACTTACCTTTGAGTTATGAGCATGATGACTAATGGTTAAATTGTA
Found at i:35656022 original size:40 final size:40
Alignment explanation
Indices: 35655922--35656186 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
35655912 GCTCCTCGTT
* * * *
35655922 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
35655962 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
35656001 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
35656041 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
35656081 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
35656121 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
35656162 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
35656187 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:35656146 original size:80 final size:80
Alignment explanation
Indices: 35655889--35656186 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
35655879 AAATCACGTA
* ** * * *
35655889 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
35655951 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
35655967 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
35656030 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
35656047 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
35656111 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
35656127 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
35656187 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:35656195 original size:41 final size:41
Alignment explanation
Indices: 35656118--35656195 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
35656108 TTTGTATCTC
* * *
35656118 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
35656159 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
35656196 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:35661464 original size:12 final size:12
Alignment explanation
Indices: 35661447--35661472 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
35661437 GTAGTTAATT
35661447 AAATTTTCATAA
1 AAATTTTCATAA
35661459 AAATTTTCATAA
1 AAATTTTCATAA
35661471 AA
1 AA
35661473 TAGGTACAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (12 bp):
AAATTTTCATAA
Found at i:35668617 original size:31 final size:31
Alignment explanation
Indices: 35668582--35668645 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
35668572 CGTTTACAGT
35668582 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
35668613 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
35668644 AA
1 AA
35668646 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:35670679 original size:43 final size:42
Alignment explanation
Indices: 35670516--35670681 Score: 138
Period size: 43 Copynumber: 3.9 Consensus size: 42
35670506 TGTACAATGT
* * * *
35670516 CAACGTCCCAGACGTGGTCTTACATGTAATCACATGTCGATGC
1 CAACGTCCCAGACATGGTCTTACACG-AAACACATATCGATGC
* * * *
35670559 C-ACTGTCCCAGATAAGGTCTTACACGAATCACA-ATTACAATGC
1 CAAC-GTCCCAGACATGGTCTTACACGAAACACATA-T-CGATGC
* * * *
35670602 CGATGTCCCAGACATGGTCTTACTCAAAATCACATATCGATGC
1 CAACGTCCCAGACATGGTCTTACACGAAA-CACATATCGATGC
* *
35670645 CAACGTACCAGACGTGGTCTTACACGAGAACACATAT
1 CAACGTCCCAGACATGGTCTTACACGA-AACACATAT
35670682 AAAAAATCAT
Statistics
Matches: 97, Mismatches: 19, Indels: 14
0.75 0.15 0.11
Matches are distributed among these distances:
42 10 0.10
43 78 0.80
44 8 0.08
45 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (42 bp):
CAACGTCCCAGACATGGTCTTACACGAAACACATATCGATGC
Found at i:35671930 original size:12 final size:12
Alignment explanation
Indices: 35671913--35671938 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
35671903 GTTCTGACTA
35671913 GGGTCAAAATCG
1 GGGTCAAAATCG
35671925 GGGTCAAAATCG
1 GGGTCAAAATCG
35671937 GG
1 GG
35671939 TTGTTACAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.15, G:0.38, T:0.15
Consensus pattern (12 bp):
GGGTCAAAATCG
Found at i:35672683 original size:50 final size:50
Alignment explanation
Indices: 35672602--35672867 Score: 336
Period size: 50 Copynumber: 5.3 Consensus size: 50
35672592 GCTAAATGAC
* * * * * ** *
35672602 CTTGTATATTCAGCCACATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* * *
35672652 CTTGAATATTCTGCCATATAGGTAAGCACATATGTGATATTATATTTGAAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTG-AT
* * * *
35672703 -TTGTATATTCGGCCATATAAGTAAGTACATATTTGATGTTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* *
35672752 CTTGCATATTCGGCCTTATAGGTAAGCACATATGTGATATTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* *
35672802 CTTGCATATTCGGCCATATATGTAAGCACATATGTGATATTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
*
35672852 CTTGTATATTCAGCCA
1 CTTGTATATTCGGCCA
35672868 AATGAGTGAT
Statistics
Matches: 189, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
49 2 0.01
50 185 0.98
51 2 0.01
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.39
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
Found at i:35680232 original size:48 final size:48
Alignment explanation
Indices: 35680161--35680280 Score: 161
Period size: 48 Copynumber: 2.5 Consensus size: 48
35680151 TGTGTGTTAC
*
35680161 TGTAAGACCATGTCTGGGACATGGCATTGGCCA-CATTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-CATCATTATGAGAGCCAG
* ** * * *
35680209 TGTAAGACCATGTCTAGGACATGGCATCGGCATTGTTATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATCATTATGAGAGCCAG
35680257 TGTAAGACCATGTCTGGGACATGG
1 TGTAAGACCATGTCTGGGACATGG
35680281 TATGTAACAT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 2 0.03
48 61 0.97
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATCATTATGAGAGCCAG
Found at i:35682904 original size:23 final size:23
Alignment explanation
Indices: 35682874--35682917 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
35682864 ACCATGTCAG
35682874 GGACATGGCATCGGCCACATTCT
1 GGACATGGCATCGGCCACATTCT
*
35682897 GGACATGGCATTGGCCACATT
1 GGACATGGCATCGGCCACATT
35682918 ATGAGAGCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (23 bp):
GGACATGGCATCGGCCACATTCT
Found at i:35683001 original size:119 final size:119
Alignment explanation
Indices: 35682780--35683008 Score: 318
Period size: 119 Copynumber: 1.9 Consensus size: 119
35682770 GAGGGGTGTT
* * * * *
35682780 ACATGACATTGTCCACATTATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCTGTGTTG
1 ACATGACATTGGCCACATTATGAGAGCCAGTGTAAGACCATCTCTGGGACATGGCATCGGTATTG
* * * *
35682845 ATATGCATGCTAGTGTAAGACCATGTCAGGGACATGGCATCGGCCACATTCTGG
66 AAACGCAAGCTAGTGTAAGACCATGTCAGGGAAATGGCATCGGCCACATTCTGG
*
35682899 ACATGGCATTGGCCACATTATGAGAGCCAGTGTAAGACCATCTCTGGGACATGGCATCGGTATTG
1 ACATGACATTGGCCACATTATGAGAGCCAGTGTAAGACCATCTCTGGGACATGGCATCGGTATTG
* *
35682964 AAACG-AGAGCTTA-TGTAAGACCATGTCTGGGAAATGGCATTGGCC
66 AAACGCA-AGC-TAGTGTAAGACCATGTCAGGGAAATGGCATCGGCC
35683009 TCGACATGTG
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
118 1 0.01
119 93 0.97
120 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (119 bp):
ACATGACATTGGCCACATTATGAGAGCCAGTGTAAGACCATCTCTGGGACATGGCATCGGTATTG
AAACGCAAGCTAGTGTAAGACCATGTCAGGGAAATGGCATCGGCCACATTCTGG
Found at i:35687972 original size:13 final size:13
Alignment explanation
Indices: 35687954--35687980 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
35687944 GAAGTAATCG
35687954 CACACGGGCGTGT
1 CACACGGGCGTGT
35687967 CACACGGGCGTGT
1 CACACGGGCGTGT
35687980 C
1 C
35687981 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:35689539 original size:26 final size:26
Alignment explanation
Indices: 35689510--35689562 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
35689500 TAGTGGTTAG
35689510 GAATGAAGAGGAACATTTTAAAGTTT
1 GAATGAAGAGGAACATTTTAAAGTTT
* *
35689536 GAATGAAGAGGAACGTTTTAGAGTTT
1 GAATGAAGAGGAACATTTTAAAGTTT
35689562 G
1 G
35689563 TCTCTAAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.28, T:0.30
Consensus pattern (26 bp):
GAATGAAGAGGAACATTTTAAAGTTT
Found at i:35691986 original size:48 final size:48
Alignment explanation
Indices: 35691915--35692286 Score: 286
Period size: 48 Copynumber: 7.8 Consensus size: 48
35691905 TGATATGTGT
* *
35691915 GCTAATGTAAGACCATGTCTGGGACATGTCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* * * *** * *
35691963 GCTAATATAAGACCATGTCTGGGACATGGAATCGGCGTTGA-TATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CACATTATGAGA
* * * *
35692011 GCTAGTGTAAGATCATGTCTAGAACATGGCATTGGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* * *** * *
35692059 GCCAGTGTAAGACCATGTATGGGACATGGCATCAGTG-TTGA-TATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G-GCCACATTATGAGA
* * * ** * *
35692107 GTTATTGTAAGACCATGTTTGGGACATGGCATCGG-CATTTATATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAT-TATGAGA
* * * *
35692155 GCTAGTGTAAGATCATGTCTGGTACATGGCATCGGCCACACTATGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
* * ** * ** *
35692203 GCCAGTGTAAGACCATGTCTGGGACATGACATCAACCCCGA-CGTGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGA
* *
35692251 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
35692287 AATTTACCCT
Statistics
Matches: 251, Mismatches: 65, Indels: 16
0.76 0.20 0.05
Matches are distributed among these distances:
46 1 0.00
47 2 0.01
48 241 0.96
49 6 0.02
50 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGA
Found at i:35692070 original size:96 final size:96
Alignment explanation
Indices: 35691905--35692286 Score: 365
Period size: 96 Copynumber: 4.0 Consensus size: 96
35691895 GACAATTGGG
* * *
35691905 TGATATGTGTGCTAATGTAAGACCATGTCTGGGACATGTCATCGGCCACATTATGAGAGCTAATA
1 TGATATGTGTGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCTAGTG
*
35691970 TAAGACCATGTCTGGGACATGGAATCGGCGT
66 TAAGACCATGTCTGGGACATGGCATCGGCGT
* * * * * *
35692001 TGATATGTGTGCTAGTGTAAGATCATGTCTAGAACATGGCATTGGCCACATTATGAGAGCCAGTG
1 TGATATGTGTGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCTAGTG
* * *
35692066 TAAGACCATGTATGGGACATGGCATCAGTGT
66 TAAGACCATGTCTGGGACATGGCATCGGCGT
* * * ** * *
35692097 TGATATGTGTGTTATTGTAAGACCATGTTTGGGACATGGCATCGG-CATTTATATGTGTGCTAGT
1 TGATATGTGTGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCCACAT-TATGAGAGCTAGT
* * *
35692161 GTAAGATCATGTCTGGTACATGGCATCGGC-C
65 GTAAGACCATGTCTGGGACATGGCATCGGCGT
** *** * * * ** * ** * *
35692192 ACACTATGAAAGCCAGTGTAAGACCATGTCTGGGACATGACATCAACCCCGA-CGTGTGAGCCAG
1 TGA-TATGTGTGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAGAGCTAG
*
35692256 TGTAAGACCATGTCTAGGACATGGCATCGGC
64 TGTAAGACCATGTCTGGGACATGGCATCGGC
35692287 AATTTACCCT
Statistics
Matches: 229, Mismatches: 53, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
95 4 0.02
96 224 0.98
97 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (96 bp):
TGATATGTGTGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCTAGTG
TAAGACCATGTCTGGGACATGGCATCGGCGT
Found at i:35692182 original size:144 final size:144
Alignment explanation
Indices: 35691970--35692236 Score: 435
Period size: 144 Copynumber: 1.9 Consensus size: 144
35691960 AGAGCTAATA
*
35691970 TAAGACCATGTCTGGGACATGGAATCGGCGTTGATATGTGTGCTAGTGTAAGATCATGTCTAGAA
1 TAAGACCATGTCTGGGACATGGAATCGGCATTGATATGTGTGCTAGTGTAAGATCATGTCTAGAA
* * * *
35692035 CATGGCATTGGCCACATTATGAGAGCCAGTGTAAGACCATGTATGGGACATGGCATCAGTGTTGA
66 CATGGCATCGGCCACACTATGAAAGCCAGTGTAAGACCATGTATGGGACATGACATCAGTGTTGA
35692100 TATGTGTGTTATTG
131 TATGTGTGTTATTG
* * * * *
35692114 TAAGACCATGTTTGGGACATGGCATCGGCATTTATATGTGTGCTAGTGTAAGATCATGTCTGGTA
1 TAAGACCATGTCTGGGACATGGAATCGGCATTGATATGTGTGCTAGTGTAAGATCATGTCTAGAA
*
35692179 CATGGCATCGGCCACACTATGAAAGCCAGTGTAAGACCATGTCTGGGACATGACATCA
66 CATGGCATCGGCCACACTATGAAAGCCAGTGTAAGACCATGTATGGGACATGACATCA
35692237 ACCCCGACGT
Statistics
Matches: 112, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
144 112 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (144 bp):
TAAGACCATGTCTGGGACATGGAATCGGCATTGATATGTGTGCTAGTGTAAGATCATGTCTAGAA
CATGGCATCGGCCACACTATGAAAGCCAGTGTAAGACCATGTATGGGACATGACATCAGTGTTGA
TATGTGTGTTATTG
Found at i:35692260 original size:144 final size:144
Alignment explanation
Indices: 35691970--35692292 Score: 430
Period size: 144 Copynumber: 2.2 Consensus size: 144
35691960 AGAGCTAATA
* * *
35691970 TAAGACCATGTCTGGGACATGGAATCGGCGTTGATATGTGTGCTAGTGTAAGATCATGTCTAGAA
1 TAAGACCATGTCTGGGACATGGCATCGGCATTTATATGTGTGCTAGTGTAAGATCATGTCTAGAA
* * * * *****
35692035 CATGGCATTGGCCACATTATGAGAGCCAGTGTAAGACCATGTATGGGACATGGCATCAGTGTTGA
66 CATGGCATCGGCCACACTATGAAAGCCAGTGTAAGACCATGTATGGGACATGACATCAACCCCGA
* * ** *
35692100 TATGTGTGTTATTG
131 CATGTGAGCCAGTG
* * *
35692114 TAAGACCATGTTTGGGACATGGCATCGGCATTTATATGTGTGCTAGTGTAAGATCATGTCTGGTA
1 TAAGACCATGTCTGGGACATGGCATCGGCATTTATATGTGTGCTAGTGTAAGATCATGTCTAGAA
*
35692179 CATGGCATCGGCCACACTATGAAAGCCAGTGTAAGACCATGTCTGGGACATGACATCAACCCCGA
66 CATGGCATCGGCCACACTATGAAAGCCAGTGTAAGACCATGTATGGGACATGACATCAACCCCGA
*
35692244 CGTGTGAGCCAGTG
131 CATGTGAGCCAGTG
*
35692258 TAAGACCATGTCTAGGACATGGCATCGGCAATTTA
1 TAAGACCATGTCTGGGACATGGCATCGGC-ATTTA
35692293 CCCTCTCGTG
Statistics
Matches: 154, Mismatches: 24, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
144 149 0.97
145 5 0.03
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (144 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATTTATATGTGTGCTAGTGTAAGATCATGTCTAGAA
CATGGCATCGGCCACACTATGAAAGCCAGTGTAAGACCATGTATGGGACATGACATCAACCCCGA
CATGTGAGCCAGTG
Found at i:35692606 original size:22 final size:22
Alignment explanation
Indices: 35692579--35692647 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 22
35692569 TCAAGAATGT
35692579 TGTGTTGGTTTATAATATGCTA
1 TGTGTTGGTTTATAATATGCTA
*** *
35692601 TGTGTT-AAATA-AAGAATG-T-
1 TGTGTTGGTTTATAA-TATGCTA
*
35692620 TGTGCTGGTTTATAATATGCTA
1 TGTGTTGGTTTATAATATGCTA
35692642 TGTGTT
1 TGTGTT
35692648 TAAAGATTCA
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 5 0.16
20 8 0.25
21 8 0.25
22 11 0.34
ACGTcount: A:0.26, C:0.04, G:0.23, T:0.46
Consensus pattern (22 bp):
TGTGTTGGTTTATAATATGCTA
Found at i:35692619 original size:41 final size:41
Alignment explanation
Indices: 35692562--35692647 Score: 154
Period size: 41 Copynumber: 2.1 Consensus size: 41
35692552 AATCTACCAT
* *
35692562 TGTTAAATCAAGAATGTTGTGTTGGTTTATAATATGCTATG
1 TGTTAAATAAAGAATGTTGTGCTGGTTTATAATATGCTATG
35692603 TGTTAAATAAAGAATGTTGTGCTGGTTTATAATATGCTATG
1 TGTTAAATAAAGAATGTTGTGCTGGTTTATAATATGCTATG
35692644 TGTT
1 TGTT
35692648 TAAAGATTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.29, C:0.05, G:0.22, T:0.44
Consensus pattern (41 bp):
TGTTAAATAAAGAATGTTGTGCTGGTTTATAATATGCTATG
Found at i:35693700 original size:21 final size:21
Alignment explanation
Indices: 35693670--35693709 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
35693660 GTTAAGAGGA
*
35693670 CACACAGGCGTGTGGCCCTTC
1 CACACAGGCGTGTGCCCCTTC
*
35693691 CACACCGGCGTGTGCCCCT
1 CACACAGGCGTGTGCCCCT
35693710 ATTTGCATTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.42, G:0.28, T:0.17
Consensus pattern (21 bp):
CACACAGGCGTGTGCCCCTTC
Found at i:35695317 original size:14 final size:14
Alignment explanation
Indices: 35695298--35695325 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
35695288 GTTGTGAGTT
35695298 CATAATTACTTATG
1 CATAATTACTTATG
35695312 CATAATTACTTATG
1 CATAATTACTTATG
35695326 TGATTGAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (14 bp):
CATAATTACTTATG
Found at i:35695789 original size:16 final size:16
Alignment explanation
Indices: 35695768--35695807 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
35695758 GATAAAAGAA
35695768 ATCATCTTATTTTTAT
1 ATCATCTTATTTTTAT
35695784 ATCATCTTATTTTTAT
1 ATCATCTTATTTTTAT
*
35695800 GTCATCTT
1 ATCATCTT
35695808 CAACCTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.23, C:0.15, G:0.03, T:0.60
Consensus pattern (16 bp):
ATCATCTTATTTTTAT
Found at i:35723394 original size:40 final size:40
Alignment explanation
Indices: 35723334--35723584 Score: 301
Period size: 40 Copynumber: 6.3 Consensus size: 40
35723324 TATTCGAATG
* * * *
35723334 ATATCTGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
35723374 ATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
*
35723414 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
35723454 ATATCTGGGCTAAGACCCAAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
35723494 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * **
35723534 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
35723573 ATATCC-GGCTAA
1 ATATCCGGGCTAA
35723585 ATTCCGAAGA
Statistics
Matches: 183, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
38 6 0.03
39 16 0.09
40 159 0.87
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:35723467 original size:80 final size:80
Alignment explanation
Indices: 35723334--35723593 Score: 337
Period size: 80 Copynumber: 3.3 Consensus size: 80
35723324 TATTCGAATG
* * * *
35723334 ATATCTGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCTGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCTGGGCTAAGACCCGAAGGCA
*
35723399 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTCGCT
* * * *
35723414 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCTGGGCTAAGACCCAAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCTGGGCTAAGACCCGAAGGCA
*
35723479 TTTGTGCTAG-CGACT
66 TTTGTGCGAGTCG-CT
* *
35723494 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATATCCGGGCTAAGACCCGAAGGC-
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCTGGGCTAAGACCCGAAGGCA
* * *
35723558 CTTGTGCGAGTGGTT
66 TTTGTGCGAGTCGCT
* *
35723573 ATATCC-GGCTAAATTCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
35723594 ATGCTTGGGT
Statistics
Matches: 156, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
78 13 0.08
79 16 0.10
80 127 0.81
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCTGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTCGCT
Found at i:35728889 original size:42 final size:42
Alignment explanation
Indices: 35728809--35728890 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
35728799 CCAGTTATGG
* **
35728809 TCTTACACGAAGTCTCACATCGATGCCATATCTTAGATATTA
1 TCTTACACGAAATCTCACATCGATGCCATATCCCAGATATTA
* * *
35728851 TCTTACACGAAATCTCATATTGATGTCATATCCCAGATAT
1 TCTTACACGAAATCTCACATCGATGCCATATCCCAGATAT
35728891 GGTTTACACA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (42 bp):
TCTTACACGAAATCTCACATCGATGCCATATCCCAGATATTA
Found at i:35735232 original size:40 final size:39
Alignment explanation
Indices: 35735187--35735410 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 39
35735177 AAGTGAATAT
* *
35735187 ATCCGGATTAAGAT-CCGAAGGCATTTGTGCGAGATACAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGATACAA
* * *
35735226 ATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAA
1 A-TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATAC-AA
* *
35735267 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATA-CAA
* **
35735307 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGAT-ACAA
* * *
35735347 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATAC-AA
* * *
35735386 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
35735411 TGAACGAGGA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 34 0.21
40 127 0.77
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACAA
Found at i:35735285 original size:80 final size:80
Alignment explanation
Indices: 35735148--35735412 Score: 254
Period size: 80 Copynumber: 3.3 Consensus size: 80
35735138 TTGAATGCTG
* * * *
35735148 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTA-AGTGAATATATCCGGATTAAGAT-CCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGA-T-AATAAATCCGGGTTAAG-TCCCGAAGGCA
35735210 TTTGTGCGAGATA-CAAA
63 TTTGTGCGAGATATCAAA
* *
35735227 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATAATAAATCCGGGTTAAGTCCCGAAGGCATT
* * *
35735292 CGTGCGAGTTATTAAA
65 TGTGCGAGATATCAAA
* * * ** *
35735308 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCA-TT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATAATAAATCCGGGTTAAGTCCCGAAGGCATTT
* *
35735372 GTGTGAGTTA-CTAAA
66 GTGCGAGATATC-AAA
* * * *
35735387 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCCTTTG
35735413 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
79 36 0.23
80 107 0.68
81 13 0.08
82 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATAATAAATCCGGGTTAAGTCCCGAAGGCATTT
GTGCGAGATATCAAA
Found at i:35735364 original size:120 final size:120
Alignment explanation
Indices: 35735148--35735410 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
35735138 TTGAATGCTG
* *
35735148 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* *
35735212 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * *
35735268 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCAT
* ** * * * *
35735331 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
35735387 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
35735411 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:35735430 original size:79 final size:80
Alignment explanation
Indices: 35735187--35735445 Score: 231
Period size: 80 Copynumber: 3.3 Consensus size: 80
35735177 AAGTGAATAT
* * * * * * *
35735187 ATCCGGATTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCC
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCA
* ** *
35735250 TTTGTGCGA-GATACTAA
64 TTCGAACGAGGA-GCTAA
* * *
35735267 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
35735332 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
35735347 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
35735411 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
35735426 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
35735446 TACGTGATTT
Statistics
Matches: 150, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 86 0.57
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:35743178 original size:40 final size:40
Alignment explanation
Indices: 35743095--35743357 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
35743085 TTGAATGCTG
* * * * * *
35743095 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
35743135 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
35743175 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
35743215 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
35743255 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
35743295 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
35743334 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
35743358 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:35743377 original size:79 final size:80
Alignment explanation
Indices: 35743134--35743392 Score: 247
Period size: 80 Copynumber: 3.3 Consensus size: 80
35743124 AAGTGAATAT
* * * * * *
35743134 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
35743198 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
** * *
35743214 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
35743279 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
35743294 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
35743358 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
35743373 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
35743393 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:35748746 original size:46 final size:46
Alignment explanation
Indices: 35748679--35748986 Score: 526
Period size: 46 Copynumber: 6.7 Consensus size: 46
35748669 NNNNNNNNNN
35748679 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGA
1 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGA
* *
35748725 ACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAATGTCCGA
1 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGA
*
35748771 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATTTCCGA
1 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGA
*
35748817 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATTTCCGA
1 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGA
* *
35748863 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGA
1 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGA
* * *
35748909 GCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGA
1 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGA
*
35748955 GCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 ACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
35748987 TCGGGTTACA
Statistics
Matches: 253, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 253 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGA
Done.