Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 109 of 284
Found at i:35752571 original size:46 final size:46
Alignment explanation
Indices: 35752504--35752675 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
35752494 TGTAACCCGC
*
35752504 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
35752550 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
35752600 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
35752643 CCATAAGTGAACTCGAACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
35752676 TAGATGCCCA
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.55
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:35752682 original size:93 final size:93
Alignment explanation
Indices: 35752512--35752683 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
35752502 GCCCATAAGT
* * *
35752512 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
35752577 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
*
35752605 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
35752670 CGAGTTTAGATGCC
66 CGAGTTCAGATGCC
35752684 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:35755994 original size:51 final size:51
Alignment explanation
Indices: 35755934--35756032 Score: 189
Period size: 51 Copynumber: 1.9 Consensus size: 51
35755924 TTGAATGGAG
*
35755934 GCTTAGCTCACATTCCCTTATCTATCCAACATGTCCCAGGGCCTCAACGCT
1 GCTTAGCTCACATTCCCTTATCTATCCAACATGTCCCAAGGCCTCAACGCT
35755985 GCTTAGCTCACATTCCCTTATCTATCCAACATGTCCCAAGGCCTCAAC
1 GCTTAGCTCACATTCCCTTATCTATCCAACATGTCCCAAGGCCTCAAC
35756033 ACTGAAATCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.23, C:0.37, G:0.12, T:0.27
Consensus pattern (51 bp):
GCTTAGCTCACATTCCCTTATCTATCCAACATGTCCCAAGGCCTCAACGCT
Found at i:35757904 original size:45 final size:45
Alignment explanation
Indices: 35757854--35758057 Score: 254
Period size: 45 Copynumber: 4.6 Consensus size: 45
35757844 CATCGACATT
* *
35757854 ATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATCTCACTGGCATT
1 ATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATCTCACCGGCATC
* *
35757899 ATAGCCTACTAGGCTC-AAAGGCCCGAATAATATCTCACCGGCATC
1 ATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCACCGGCATC
* *
35757944 ATAGCCTGCTAGGCTC-AAAGGCGCGAATAGTATTTCACCGGCATC
1 ATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCACCGGCATC
* * * * *
35757989 ATAGCTTGCTGGGCTCGAAGGCCCGAATAGTATTTCACTGGCATC
1 ATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATCTCACCGGCATC
*
35758034 ATAGCCTGCTA-GCCCG-AAGCCCGA
1 ATAGCCTGCTAGGCTCGAAAGCCCGA
35758058 TATCATTTTT
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
43 7 0.05
44 7 0.05
45 124 0.89
46 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (45 bp):
ATAGCCTGCTAGGCTCGAAAGCCCGAATAGTATCTCACCGGCATC
Found at i:35759817 original size:26 final size:27
Alignment explanation
Indices: 35759765--35759817 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
35759755 ATGAGTTCTG
* *
35759765 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
35759792 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
35759818 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:35765479 original size:2 final size:2
Alignment explanation
Indices: 35765472--35765496 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
35765462 TGTGTTAAGT
35765472 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
35765497 TCGGATGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:35765809 original size:41 final size:41
Alignment explanation
Indices: 35765684--35765798 Score: 203
Period size: 41 Copynumber: 2.8 Consensus size: 41
35765674 TTTATCGTTA
* *
35765684 GTGACATAATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
35765725 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
35765766 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
35765799 AAGAGCCGGT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:35766069 original size:33 final size:32
Alignment explanation
Indices: 35766013--35766076 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
35766003 ATAGATATGT
35766013 ATATATATATATGTTGCATTCGGCATAGGTGG
1 ATATATATATATGTTGCATTCGGCATAGGTGG
* *
35766045 ATATATTTATGTGTATGCATTCGGCATAGGTG
1 ATATATATATATGT-TGCATTCGGCATAGGTG
35766077 AAAATAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (32 bp):
ATATATATATATGTTGCATTCGGCATAGGTGG
Found at i:35766093 original size:33 final size:33
Alignment explanation
Indices: 35766020--35766093 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
35766010 TGTATATATA
* * **
35766020 TATATGT-TGCATTCGGCATAGGTGGATATATT
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
35766052 TATGTGTATGCATTCGGCATAGGTGAAAATAAG
1 TATATGTATGCATTCGGCATAGGTGAAAATAAG
*
35766085 TGTATGTAT
1 TATATGTAT
35766094 CTATGCATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (33 bp):
TATATGTATGCATTCGGCATAGGTGAAAATAAG
Found at i:35782427 original size:15 final size:14
Alignment explanation
Indices: 35782394--35782432 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
35782384 TATTTTATTG
*
35782394 AAAATGGTTTCTGA
1 AAAATGATTTCTGA
*
35782408 AAAATGATTTTTGAA
1 AAAATGATTTCTG-A
35782423 AAAATGATTT
1 AAAATGATTT
35782433 ATTTTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.44, C:0.03, G:0.15, T:0.38
Consensus pattern (14 bp):
AAAATGATTTCTGA
Found at i:35783491 original size:146 final size:146
Alignment explanation
Indices: 35783227--35783528 Score: 586
Period size: 146 Copynumber: 2.1 Consensus size: 146
35783217 AAGTACAGGG
35783227 ACTAAATTACAAATTTGTGAATAGTACATAGACTTATGATATATTTTAACCATTATACTACAATA
1 ACTAAATTACAAATTTGTGAATAGTACATAGACTTATGATATATTTTAACCATTATACTACAATA
35783292 CGTTTATTATTAATATATTTATAATTGTTATAACTATTTATTATTAAAATATTAATATTAATTAT
66 CGTTTATTATTAATATATTTATAATTGTTATAACTATTTATTATTAAAATATTAATATTAATTAT
35783357 TTTTCAATAATACATA
131 TTTTCAATAATACATA
35783373 ACTAAATTACAAATTTGTGAATAGTACATAGACTTATGATATATTTTAACCATTATACTACAATA
1 ACTAAATTACAAATTTGTGAATAGTACATAGACTTATGATATATTTTAACCATTATACTACAATA
35783438 CGTTTATTATTAATATATTTATAATTGTTATAACTATTTATTATTAAAATATTAATATTAATTAT
66 CGTTTATTATTAATATATTTATAATTGTTATAACTATTTATTATTAAAATATTAATATTAATTAT
35783503 TTTTCAATAATACATA
131 TTTTCAATAATACATA
*
35783519 AATAATATTA
1 ACTAA-ATTA
35783529 TTTAAATTAT
Statistics
Matches: 154, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
146 150 0.97
147 4 0.03
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (146 bp):
ACTAAATTACAAATTTGTGAATAGTACATAGACTTATGATATATTTTAACCATTATACTACAATA
CGTTTATTATTAATATATTTATAATTGTTATAACTATTTATTATTAAAATATTAATATTAATTAT
TTTTCAATAATACATA
Found at i:35783560 original size:13 final size:14
Alignment explanation
Indices: 35783518--35783564 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
35783508 AATAATACAT
*
35783518 AAATAATATTATTTA
1 AAATATTATTA-TTA
* *
35783533 AATTATTATTTTTA
1 AAATATTATTATTA
35783547 AAAT-TTATTATTA
1 AAATATTATTATTA
35783560 AAATA
1 AAATA
35783565 ATAAATTATA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
13 12 0.46
14 6 0.23
15 8 0.31
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
AAATATTATTATTA
Found at i:35785124 original size:19 final size:19
Alignment explanation
Indices: 35785084--35785139 Score: 53
Period size: 19 Copynumber: 2.9 Consensus size: 19
35785074 TTACAAAAAT
*
35785084 AAATTCAAAATAATTT-TCAA
1 AAATTAAAAAT-ATTTAT-AA
35785104 AAATTAAAAATATTTATAA
1 AAATTAAAAATATTTATAA
* *
35785123 AATTTTAAAAT-TTTATA
1 AAATTAAAAATATTTATA
35785140 TTTTTTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 6 0.19
19 15 0.47
20 11 0.34
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (19 bp):
AAATTAAAAATATTTATAA
Found at i:35786919 original size:14 final size:14
Alignment explanation
Indices: 35786900--35786930 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
35786890 TTTTTTATAA
35786900 GTGTTGTCCGGTTC
1 GTGTTGTCCGGTTC
*
35786914 GTGTTGTCTGGTTC
1 GTGTTGTCCGGTTC
35786928 GTG
1 GTG
35786931 AATTAAAGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.16, G:0.39, T:0.45
Consensus pattern (14 bp):
GTGTTGTCCGGTTC
Found at i:35787014 original size:29 final size:29
Alignment explanation
Indices: 35786982--35787041 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
35786972 GTGGAAAAGG
35786982 TTGTGTTGATTGAAAGCTCGGAACATTCT
1 TTGTGTTGATTGAAAGCTCGGAACATTCT
*
35787011 TTGTGTTGGTTGAAAGCTCGGAACATTCT
1 TTGTGTTGATTGAAAGCTCGGAACATTCT
35787040 TT
1 TT
35787042 ACTGCCTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.22, C:0.13, G:0.25, T:0.40
Consensus pattern (29 bp):
TTGTGTTGATTGAAAGCTCGGAACATTCT
Found at i:35787746 original size:24 final size:24
Alignment explanation
Indices: 35787714--35787765 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
35787704 AATCAAAGTC
* *
35787714 AAATATATTATGCTCATAAATGCT
1 AAATATATTATACTCATAAATACT
35787738 AAATATATTATACTCATAAATACT
1 AAATATATTATACTCATAAATACT
35787762 AAAT
1 AAAT
35787766 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.48, C:0.12, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTCATAAATACT
Found at i:35792070 original size:43 final size:43
Alignment explanation
Indices: 35792022--35792213 Score: 222
Period size: 43 Copynumber: 4.5 Consensus size: 43
35792012 TTATGAGGAA
* * *
35792022 AAACGCCACTATAGAACATGACCTTTAGCGGTGCTTTTCCCAC
1 AAACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
* * *
35792065 AAACGCCACTAAAGAACATGACCTTTAGTGGCGTTTTCCCCAT
1 AAACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
** * *
35792108 AAACGCCGTTAAAGAACATGACCTTTAGCGGTGCTTTCCCCAT
1 AAACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
*** * **
35792151 AAACGTTGCTAAAGAACATTACCTTTAGCAACGCTTTCCCCAC
1 AAACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
* *
35792194 AAACGCCGCTAAAGACCATG
1 AAACGCCACTAAAGAACATG
35792214 TCAAATTCAA
Statistics
Matches: 126, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 126 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (43 bp):
AAACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTCCCCAC
Found at i:35792167 original size:86 final size:86
Alignment explanation
Indices: 35792022--35792213 Score: 249
Period size: 86 Copynumber: 2.2 Consensus size: 86
35792012 TTATGAGGAA
* * *
35792022 AAACGCCACTATAGAACATGACCTTTAGCGGTGCTTTTCCCACAAACGCCACTAAAGAACATGAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGTGCTTTCCCCACAAACGCCACTAAAGAACATGAC
*** * *
35792087 CTTTAGTGGCGTTTTCCCCAT
66 CTTTAGCAACGCTTTCCCCAC
* * *** *
35792108 AAACGCCGTTAAAGAACATGACCTTTAGCGGTGCTTTCCCCATAAACGTTGCTAAAGAACATTAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGTGCTTTCCCCACAAACGCCACTAAAGAACATGAC
35792173 CTTTAGCAACGCTTTCCCCAC
66 CTTTAGCAACGCTTTCCCCAC
*
35792194 AAACGCCGCTAAAGACCATG
1 AAACGCCGCTAAAGAACATG
35792214 TCAAATTCAA
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
86 90 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (86 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGTGCTTTCCCCACAAACGCCACTAAAGAACATGAC
CTTTAGCAACGCTTTCCCCAC
Found at i:35795570 original size:48 final size:48
Alignment explanation
Indices: 35795491--35795711 Score: 257
Period size: 48 Copynumber: 4.6 Consensus size: 48
35795481 GGGTACATGT
* * *
35795491 GAGCTAGTGTAAGACCATGTCTGGGAAATGGCATCGGCCTTAATATGA
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCTTAATATGA
* *
35795539 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCCACCTTAACATGA
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCTTAATATGA
* * *
35795587 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATAT-A
1 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCTTAATATGA
* * * * ** *
35795634 TGAGCCAGTGTAAGACCATGT-TTGGAACATGGAATCGACTTTGTTACGA
1 -GAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGACCTTAATATGA
* *
35795683 GAGCTAGTGTAAGATCATGTTTAGGACAT
1 GAGCTAGTGTAAGACCATGTCTAGGACAT
35795712 AGTATCAGCA
Statistics
Matches: 147, Mismatches: 22, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
47 4 0.03
48 139 0.95
49 4 0.03
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACCTTAATATGA
Found at i:35795664 original size:96 final size:96
Alignment explanation
Indices: 35795485--35795711 Score: 287
Period size: 96 Copynumber: 2.4 Consensus size: 96
35795475 ATGTTAGGGT
* * * *
35795485 ACATGTGAGCTAGTGTAAGACCATGTCTGGGAAATGGCATCGGCCTTAATATGAGAGCTAGTGTA
1 ACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGAGAGCCAGTGTA
*
35795550 AGACCATGTCTAGGACATGGCATCCACCTTA
66 AGACCATGTCTAGGACATGGAATCCACCTTA
35795581 ACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATAT-ATGAGCCAGTGT
1 ACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGA-GAGCCAGTGT
* * * *
35795645 AAGACCATGT-TTGGAACATGGAATCGACTTTG
65 AAGACCATGTCTAGG-ACATGGAATCCACCTTA
** * * * *
35795677 TTACGAGAGCTAGTGTAAGATCATGTTTAGGACAT
1 ACATGAGAGCTAGTGTAAGACCATGTCTGGGACAT
35795712 AGTATCAGCA
Statistics
Matches: 114, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
95 4 0.04
96 110 0.96
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (96 bp):
ACATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGAGAGCCAGTGTA
AGACCATGTCTAGGACATGGAATCCACCTTA
Found at i:35802538 original size:43 final size:43
Alignment explanation
Indices: 35802480--35802627 Score: 167
Period size: 43 Copynumber: 3.4 Consensus size: 43
35802470 TATCGAGATG
* *
35802480 TGATTACATCTAAGACCATGTCTGGGACATTGGCATTGTATTGA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATT-A
* *
35802524 -GATTGCATGTAAGACCATGTTTGGGACATTGGCATCGTATTA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
* * * *
35802566 TGATTTCGTGTAAGACCCTGTCTGGGACAATGGCATCG-A-TA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
*
35802607 CGTATTTACATGTAAGACCAT
1 TG-A-TTACATGTAAGACCAT
35802628 ATTTGCGACA
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
41 3 0.03
42 3 0.03
43 82 0.93
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTA
Found at i:35803665 original size:13 final size:13
Alignment explanation
Indices: 35803647--35803671 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35803637 CGTGTGCGAC
35803647 ACACGGTCATGTT
1 ACACGGTCATGTT
35803660 ACACGGTCATGT
1 ACACGGTCATGT
35803672 ACCCCCTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (13 bp):
ACACGGTCATGTT
Found at i:35810111 original size:27 final size:27
Alignment explanation
Indices: 35810080--35810239 Score: 155
Period size: 27 Copynumber: 5.9 Consensus size: 27
35810070 TCAGCGCTAT
35810080 ATAATCAACTCGCACACTTAGTGCCAC
1 ATAATCAACTCGCACACTTAGTGCCAC
* * *
35810107 GTAATCAAATCGCACACTTAGTGCTAC
1 ATAATCAACTCGCACACTTAGTGCCAC
* *
35810134 ATAGTCAGACTCGCACACTTAGTGCCGC
1 ATAATCA-ACTCGCACACTTAGTGCCAC
** *
35810162 ATGGTCAATTCGCACACTTAGTG-CATC
1 ATAATCAACTCGCACACTTAGTGCCA-C
* ** *
35810189 ATATTCATTTCGCACACTTAGTGCAAC
1 ATAATCAACTCGCACACTTAGTGCCAC
35810216 A-AAGTCGAA-TCGCACACTTAGTGC
1 ATAA-TC-AACTCGCACACTTAGTGC
35810240 TGTACAATTT
Statistics
Matches: 111, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
26 2 0.02
27 84 0.76
28 25 0.23
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
ATAATCAACTCGCACACTTAGTGCCAC
Found at i:35810204 original size:82 final size:81
Alignment explanation
Indices: 35810084--35810239 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
35810074 CGCTATATAA
* * * *
35810084 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACAAAGTC-GAATCGCA
35810149 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
35810166 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACAAAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACAAAGTCGAATCGCA
35810230 CACTTAGTGC
65 CACTTAGTGC
35810240 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 19 0.29
82 46 0.71
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACAAAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:35812478 original size:16 final size:16
Alignment explanation
Indices: 35812437--35812478 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
35812427 AAAGTTGATA
35812437 ATAATTAATATATATT
1 ATAATTAATATATATT
*
35812453 ATAATGAATATA-ATT
1 ATAATTAATATATATT
35812468 ATATATTAATA
1 ATA-ATTAATA
35812479 ATTATCATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
ATAATTAATATATATT
Found at i:35819381 original size:79 final size:81
Alignment explanation
Indices: 35819246--35819428 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
35819236 AAATGATGTT
* *
35819246 CGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
*
35819310 TG-AGAGTTACTA-ATTC
66 TGCA-AGTTACTATA-AC
* * * **
35819326 CGTGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTT
35819388 GTGCAAGTTACTATAAC
65 GTGCAAGTTACTATAAC
*
35819405 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
35819429 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 56 0.64
80 31 0.35
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (81 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCAAGTTACTATAAC
Found at i:35819442 original size:40 final size:41
Alignment explanation
Indices: 35819246--35819428 Score: 209
Period size: 40 Copynumber: 4.6 Consensus size: 41
35819236 AAATGATGTT
* * *
35819246 CGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACTAT-ATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAATC
* * *
35819286 CGGACTAAGAT-CCGAAGGCATTTGTGAGAGTTACTA-ATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAATC
*
35819326 CGTGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATC
* *
35819365 CGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATC
*
35819405 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
35819429 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 9 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (41 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATC
Found at i:35819450 original size:79 final size:79
Alignment explanation
Indices: 35819297--35819461 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
35819287 GGACTAAGAT
* * **
35819297 CCGAAGGCATTTGTGAGAGTTACTAATTCCGTGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGAGAGTTACTAATACCGGGCTAAGTCCGAAGGCATTTGAACGAGTTACTAA
*
35819362 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
35819376 CCGAAGGCATTTGTGCA-AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 CCGAAGGCATTTGTG-AGAGTTACTAAT-ACCGGGCTAAGT-CCGAAGGCATTTGAACGAGTTA-
* * *
35819438 CTATAT-CTGGTTAAATT
62 CTAAATCCGGGTTAAATC
35819455 CCGAAGG
1 CCGAAGG
35819462 TACATGATTC
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 2 0.03
79 48 0.66
80 23 0.32
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGAGAGTTACTAATACCGGGCTAAGTCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:35821861 original size:22 final size:22
Alignment explanation
Indices: 35821819--35821863 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
35821809 TTATTAACCC
*
35821819 AAATTAACTTGAATATAAATTA
1 AAATTAACTTAAATATAAATTA
*
35821841 AAATTAA-TTAAATTATGAATTA
1 AAATTAACTTAAA-TATAAATTA
35821863 A
1 A
35821864 TAAACATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (22 bp):
AAATTAACTTAAATATAAATTA
Found at i:35822023 original size:12 final size:11
Alignment explanation
Indices: 35821997--35822031 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 11
35821987 GAAAAAAACC
35821997 AAATTAA-TAA
1 AAATTAATTAA
35822007 AAATTAATTATA
1 AAATTAATTA-A
35822019 AAATTAATTAA
1 AAATTAATTAA
35822030 AA
1 AA
35822032 TTCAACATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.30
11 5 0.22
12 11 0.48
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
AAATTAATTAA
Found at i:35824797 original size:40 final size:40
Alignment explanation
Indices: 35824733--35824877 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
35824723 CATTTGAATG
* *
35824733 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGA-T
* * *
35824773 TTATCCGGGCTAAGACCCGGAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
* *
35824813 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
* *
35824853 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
35824878 ATTGTGCTTG
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 91 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGAT
Found at i:35824896 original size:80 final size:80
Alignment explanation
Indices: 35824733--35824904 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 80
35824723 CATTTGAATG
* * * * * *
35824733 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGGAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
35824798 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
35824813 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
35824877 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
35824893 ATATCC-GGCTAA
1 ATATCCGGGCTAA
35824905 ATTCCGAAGA
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
79 6 0.08
80 70 0.90
81 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:35826825 original size:43 final size:43
Alignment explanation
Indices: 35826731--35826831 Score: 123
Period size: 43 Copynumber: 2.3 Consensus size: 43
35826721 CCGAGATGTG
* * * * * *
35826731 ATTACATGTAAGAACATGTCTGGGACATTGGCATTGTATTGTG
1 ATTACGTGTAAGACCATGTCTGGAACATTGGCATCGTATTATA
35826774 ATTACGTGTAAGACCATGTCTGGAACATTGGCATCGT-TATATA
1 ATTACGTGTAAGACCATGTCTGGAACATTGGCATCGTAT-TATA
*
35826817 ATTTCGTGTAAGACC
1 ATTACGTGTAAGACC
35826832 CTATCCGAGA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.02
43 49 0.98
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.34
Consensus pattern (43 bp):
ATTACGTGTAAGACCATGTCTGGAACATTGGCATCGTATTATA
Found at i:35829022 original size:48 final size:48
Alignment explanation
Indices: 35828954--35829172 Score: 266
Period size: 48 Copynumber: 4.6 Consensus size: 48
35828944 TAAAGTACCA
* * * * *
35828954 ATGCCATGTCCTAGGCATGGTCTTACATGAATCCACATA-A-CATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACA--AATGCACATATATCATCACCG
*
35829002 ATGCCATGTCCCAGACATGGTCTTAC-AATGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACAAAT-GCACATATATCATCACCG
* * *
35829050 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACAAATGCACATATATCATCACCG
* * *
35829098 ATGCCATGTCCCAGGCATGGTCTTACACA-GACACATATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACAAATG-CACATATATCATCACCG
35829146 ATGCCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
35829173 CGAAATCTCA
Statistics
Matches: 156, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
45 3 0.02
46 6 0.04
47 2 0.01
48 144 0.92
49 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACAAATGCACATATATCATCACCG
Found at i:35829173 original size:48 final size:48
Alignment explanation
Indices: 35829002--35829173 Score: 292
Period size: 48 Copynumber: 3.6 Consensus size: 48
35828992 AACATCGCCA
**
35829002 ATGCCATGTCCCAGACATGGTCTTACA-ATGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACA-GGCACATATATCATCATCG
35829050 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCATCG
* *
35829098 ATGCCATGTCCCAGGCATGGTCTTACACAGACACATATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCATCG
35829146 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
35829174 GAAATCTCAT
Statistics
Matches: 118, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
48 117 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCATCG
Found at i:35836144 original size:29 final size:29
Alignment explanation
Indices: 35836111--35836184 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
35836101 GTTGTGAGAT
* *
35836111 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
35836140 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
35836169 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
35836185 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:35842701 original size:12 final size:12
Alignment explanation
Indices: 35842684--35842712 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
35842674 TTTCCACAGC
35842684 TCCATCGTCACA
1 TCCATCGTCACA
35842696 TCCATCGTCACA
1 TCCATCGTCACA
35842708 TCCAT
1 TCCAT
35842713 TATGCGCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.41, G:0.07, T:0.28
Consensus pattern (12 bp):
TCCATCGTCACA
Found at i:35859081 original size:93 final size:92
Alignment explanation
Indices: 35858923--35859092 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 92
35858913 GCCCCTAAGT
* **
35858923 GAACTCGGACTCAACTCAACTAGCTCGGTGTTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
35858988 GAGTTCGGATGCCTAGTTACATTTCAC
66 GAGTTCGGATGCCTAGTTACATTTCAC
* * *
35859015 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCGATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
35859080 CGAGTTTGGATGC
65 CGAGTTCGGATGC
35859093 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 26 0.37
93 44 0.63
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCAC
Found at i:35859108 original size:46 final size:45
Alignment explanation
Indices: 35858918--35859100 Score: 142
Period size: 45 Copynumber: 4.0 Consensus size: 45
35858908 AACCCGCCCC
* * ** * *
35858918 TAAGTGAACTCGGACTCAACTCAACTAGCTCGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCA
*
35858963 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG-ATGC-CTAGTTA-CA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGC-A---ACCA
* * * * *
35859009 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCGA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCA
* *
35859056 TAAGTGAACTCGGACTCAACTCAACGAGTTTGG-ATGCTCAACCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCA
35859100 T
1 T
35859101 CCTAGTGACA
Statistics
Matches: 108, Mismatches: 19, Indels: 23
0.72 0.13 0.15
Matches are distributed among these distances:
43 1 0.01
44 11 0.10
45 32 0.30
46 29 0.27
47 28 0.26
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCA
Found at i:35861646 original size:48 final size:48
Alignment explanation
Indices: 35861570--35861671 Score: 141
Period size: 48 Copynumber: 2.1 Consensus size: 48
35861560 TAAGGTTATG
* *
35861570 TGTGATCCCATGTAAAACCATGTATGGGACATGGAATTGGCATCGATA
1 TGTGATCCCATGTAAAACCATATATGGGACAAGGAATTGGCATCGATA
* * * * *
35861618 TGTGATCCCATGTAAGACCATATCTGGGATAAGGTATTGGCATCTATA
1 TGTGATCCCATGTAAAACCATATATGGGACAAGGAATTGGCATCGATA
35861666 TGTGAT
1 TGTGAT
35861672 TTTGTATAAG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAAACCATATATGGGACAAGGAATTGGCATCGATA
Found at i:35869257 original size:48 final size:48
Alignment explanation
Indices: 35869181--35869313 Score: 160
Period size: 48 Copynumber: 2.8 Consensus size: 48
35869171 TAGGGTTATG
* *
35869181 TGTGATCCCATGTAAGGCCATGTATGGGACATGGCATTGGCAT-TGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCT-ATA
* * * *
35869229 TGTGATCCCATGTAAGACGATATCTGGGATAAGGCATTGGCATCTATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATA
****
35869277 TGTGATTTGGTGTAAGACCATGTCTGGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
35869314 CGATATGAGG
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
48 69 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATA
Found at i:35869346 original size:42 final size:42
Alignment explanation
Indices: 35869286--35869398 Score: 106
Period size: 43 Copynumber: 2.7 Consensus size: 42
35869276 ATGTGATTTG
35869286 GTGTAAGACCAT-GTCTGGGACATGGCATCGATATGAG-GCATC
1 GTGTAAGACCATAG-CTGGGACATGGCATCGATATGAGAGC-TC
* * *
35869328 GTGTAAGACCATAGCTGGG-CTATCGACATCGATATGTGATCTC
1 GTGTAAGACCATAGCTGGGAC-AT-GGCATCGATATGAGAGCTC
* * * *
35869371 ATGTACGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATAGCTGGGACATGGCAT
35869399 TGGGATCTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
41 1 0.02
42 23 0.40
43 33 0.57
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGACATGGCATCGATATGAGAGCTC
Found at i:35871389 original size:42 final size:44
Alignment explanation
Indices: 35871287--35871432 Score: 154
Period size: 42 Copynumber: 3.4 Consensus size: 44
35871277 TATGTGTTAT
* * * * * *
35871287 CGTGTAAGACAACGTCTGGGACGTTGGCATCGATTTGTGATTTA
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTA
35871331 CGTGTAAGACCATGTCTAGGACATTGGCATCG-TATATGATTT-
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTA
* * * * *
35871373 TGTGTAAGACCTTGTCTAGGACAGTGTCATCGATATTTGA-TTA
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTA
* *
35871416 CATGTAAGACCACGTCT
1 CGTGTAAGACCATGTCT
35871433 GGGATGCTGG
Statistics
Matches: 85, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
42 30 0.35
43 27 0.32
44 28 0.33
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTA
Found at i:35873964 original size:20 final size:20
Alignment explanation
Indices: 35873936--35873980 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
35873926 CGGGCTGAGG
*
35873936 ACACGGGCATGTCCCAAGCC
1 ACACAGGCATGTCCCAAGCC
35873956 ACACAGGCATGTCCCAAGCC
1 ACACAGGCATGTCCCAAGCC
35873976 ACACA
1 ACACA
35873981 AGCGTGTGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.31, C:0.40, G:0.20, T:0.09
Consensus pattern (20 bp):
ACACAGGCATGTCCCAAGCC
Found at i:35878934 original size:42 final size:42
Alignment explanation
Indices: 35878858--35879010 Score: 171
Period size: 42 Copynumber: 3.6 Consensus size: 42
35878848 GCCATGGCTT
* ** * * * * *
35878858 AGACATCGTCTTACACGGGACCTCACATCGATGCCATGTCCT
1 AGACATGGTCTTACACGAAATCTCATATCAATGCCATATCCC
35878900 AGACATGGTCTTACACGAAATCTCATATCAATGCCATATCCC
1 AGACATGGTCTTACACGAAATCTCATATCAATGCCATATCCC
* * *
35878942 AGATATGGTCTTACATGAAATCTCATATCAATGTCATATCCC
1 AGACATGGTCTTACACGAAATCTCATATCAATGCCATATCCC
* * * *
35878984 AGATATGGTATTACATGAAATCACATA
1 AGACATGGTCTTACACGAAATCTCATA
35879011 CCGAGGCTGA
Statistics
Matches: 98, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 98 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (42 bp):
AGACATGGTCTTACACGAAATCTCATATCAATGCCATATCCC
Found at i:35879030 original size:48 final size:42
Alignment explanation
Indices: 35878890--35879046 Score: 152
Period size: 42 Copynumber: 3.6 Consensus size: 42
35878880 TCACATCGAT
* * * * * * *
35878890 GCCATGTCCTAGACATGGTCTTACACGAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCACATACCAAC
* * *
35878932 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCACATACCAAC
* *
35878974 GTCATATCCCAGATATGGTATTACATGAAATCACATACCGAGGCTGAC
1 GCCATATCCCAGATATGGTCTTACATGAAATCACATACC-A-----AC
35879022 GCCATATCCCAGATATGGTCTTACA
1 GCCATATCCCAGATATGGTCTTACA
35879047 CTGGTACACA
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
42 73 0.74
43 1 0.01
48 24 0.24
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTACATGAAATCACATACCAAC
Found at i:35879057 original size:48 final size:49
Alignment explanation
Indices: 35878976--35879098 Score: 133
Period size: 48 Copynumber: 2.6 Consensus size: 49
35878966 ATATCAATGT
* * * *
35878976 CATATCCCAGATATGGTATTACA-TGAAATCACATACCGAGGCTGACGC
1 CATATCCCAGATATGGTCTTACACTGGAATCACATACCAAGGCCGACGC
* * * *
35879024 CATATCCCAGATATGGTCTTACACTGGTA-CACATATCAATGCCGATGC
1 CATATCCCAGATATGGTCTTACACTGGAATCACATACCAAGGCCGACGC
* * *
35879072 CATGTCCCAGACATTGTCTTACACTGG
1 CATATCCCAGATATGGTCTTACACTGG
35879099 CTCTCATTAA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 60 0.95
49 3 0.05
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
CATATCCCAGATATGGTCTTACACTGGAATCACATACCAAGGCCGACGC
Found at i:35884008 original size:39 final size:39
Alignment explanation
Indices: 35883965--35884174 Score: 188
Period size: 39 Copynumber: 5.4 Consensus size: 39
35883955 TTAAATTATT
* * * *
35883965 AATGTTATTTGATTATACAAGTAATGTGATATATGTTTA
1 AATGTTATGTGATTATACGAGTATTGTGATATATGCTTA
* ** *
35884004 AATGTCATGTGATTATGTGA-TATTGTGATATATGCTTG
1 AATGTTATGTGATTATACGAGTATTGTGATATATGCTTA
**
35884042 AATGTTATGAAATTATACGAGTATTGTGATATATGCTTA
1 AATGTTATGTGATTATACGAGTATTGTGATATATGCTTA
* ** * *
35884081 AATATTATGTGATTATTTGAGTACTGTGATATATGCTTG
1 AATGTTATGTGATTATACGAGTATTGTGATATATGCTTA
* * * * * * *
35884120 TATGTTAGGTGACTATATGTGTAATATGATATATGCTTA
1 AATGTTATGTGATTATACGAGTATTGTGATATATGCTTA
* *
35884159 AAAGTGAATGTGATTA
1 AATGT-TATGTGATTA
35884175 CCATCCAAAT
Statistics
Matches: 134, Mismatches: 35, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
38 30 0.22
39 97 0.72
40 7 0.05
ACGTcount: A:0.32, C:0.04, G:0.20, T:0.43
Consensus pattern (39 bp):
AATGTTATGTGATTATACGAGTATTGTGATATATGCTTA
Found at i:35884070 original size:77 final size:78
Alignment explanation
Indices: 35883976--35884126 Score: 223
Period size: 77 Copynumber: 1.9 Consensus size: 78
35883966 ATGTTATTTG
* * *
35883976 ATTATACAAGTAATGTGATATATGTTTAAATGTCATGTGATTATGTGA-TATTGTGATATATGCT
1 ATTATACAAGTAATGTGATATATGCTTAAATATCATGTGATTATGTGAGTACTGTGATATATGCT
35884040 TGAATGTTATGAA
66 TGAATGTTATGAA
* * * *
35884053 ATTATACGAGTATTGTGATATATGCTTAAATATTATGTGATTATTTGAGTACTGTGATATATGCT
1 ATTATACAAGTAATGTGATATATGCTTAAATATCATGTGATTATGTGAGTACTGTGATATATGCT
*
35884118 TGTATGTTA
66 TGAATGTTA
35884127 GGTGACTATA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
77 42 0.65
78 23 0.35
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (78 bp):
ATTATACAAGTAATGTGATATATGCTTAAATATCATGTGATTATGTGAGTACTGTGATATATGCT
TGAATGTTATGAA
Found at i:35884151 original size:78 final size:77
Alignment explanation
Indices: 35883978--35884160 Score: 222
Period size: 78 Copynumber: 2.4 Consensus size: 77
35883968 GTTATTTGAT
* * * *
35883978 TATACAAGTAATGTGATATATGTTTAAATGTCATGTGATTATGTGATATTGTGATATATGCTTGA
1 TATACGAGTAATGTGATATATGCTTAAATATCATGTGATTATGTGATACTGTGATATATGCTTGA
* *
35884043 ATGTTATGAAAT
66 ATGTTAGGAAAC
* * *
35884055 TATACGAGTATTGTGATATATGCTTAAATATTATGTGATTATTTGAGTACTGTGATATATGCTTG
1 TATACGAGTAATGTGATATATGCTTAAATATCATGTGATTATGTGA-TACTGTGATATATGCTTG
* **
35884120 TATGTTAGGTGAC
65 AATGTTAGGAAAC
* * *
35884133 TATATGTGTAATATGATATATGCTTAAA
1 TATACGAGTAATGTGATATATGCTTAAA
35884161 AGTGAATGTG
Statistics
Matches: 89, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
77 40 0.45
78 49 0.55
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (77 bp):
TATACGAGTAATGTGATATATGCTTAAATATCATGTGATTATGTGATACTGTGATATATGCTTGA
ATGTTAGGAAAC
Found at i:35886422 original size:44 final size:44
Alignment explanation
Indices: 35886279--35886429 Score: 136
Period size: 44 Copynumber: 3.5 Consensus size: 44
35886269 CAATGTCAAC
* *
35886279 GTCCCAGACGTGGTCTTACA--TATAATC-AAATATCGATGCCACT
1 GTCCCAGACGTGGTCTTACACGTA-AATCTCAA-ATCGATGCCAAT
* * **
35886322 GTCCTAGA-TTGGGTCTTACACG-AAA--TCAAATACGATGCTGAT
1 GTCCCAGACGT-GGTCTTACACGTAAATCTCAAAT-CGATGCCAAT
* * *
35886364 GTTCCAGACATGGTCTTACACGTAAATCTCAAATCGATACCAAT
1 GTCCCAGACGTGGTCTTACACGTAAATCTCAAATCGATGCCAAT
35886408 GTCCCAGACGTGGTCTTACACG
1 GTCCCAGACGTGGTCTTACACG
35886430 GAATCACATA
Statistics
Matches: 85, Mismatches: 14, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
41 2 0.02
42 27 0.32
43 22 0.26
44 28 0.33
45 6 0.07
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (44 bp):
GTCCCAGACGTGGTCTTACACGTAAATCTCAAATCGATGCCAAT
Found at i:35893870 original size:42 final size:41
Alignment explanation
Indices: 35893778--35893933 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 41
35893768 AATGACAACA
* * *
35893778 TCCCAGACGTAGTCTTACAC-ACAATCAAATATCGATGCCACTA
1 TCCCAGACATGGTCTTACACTA-AATCAAATA-CGATGCCA-TG
35893821 TCCCAGACATGGTCTTACACTAAATCAAATACGATGCCGATG
1 TCCCAGACATGGTCTTACACTAAATCAAATACGATGCC-ATG
* *
35893863 TCGCAGACATGGTCTTACATATAAATCTCAAATTA--ATGCCAATG
1 TCCCAGACATGGTCTTACA-CTAAA--TCAAA-TACGATGCC-ATG
* *
35893907 TCCCAGACATGGTGTTACACGAAATCA
1 TCCCAGACATGGTCTTACACTAAATCA
35893934 CATATTGGAA
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
41 3 0.03
42 26 0.27
43 35 0.36
44 26 0.27
45 5 0.05
46 2 0.02
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.25
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACACTAAATCAAATACGATGCCATG
Found at i:35903416 original size:79 final size:81
Alignment explanation
Indices: 35903281--35903463 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
35903271 AAATGATGTT
*
35903281 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
*
35903345 TG-AGAGTTACTA-ATTC
66 TGCA-AGTTACTATA-AC
* * * **
35903361 CGTGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTT
35903423 GTGCAAGTTACTATAAC
65 GTGCAAGTTACTATAAC
*
35903440 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
35903464 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 57 0.64
80 31 0.35
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (81 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCAAGTTACTATAAC
Found at i:35903477 original size:40 final size:41
Alignment explanation
Indices: 35903281--35903463 Score: 218
Period size: 40 Copynumber: 4.6 Consensus size: 41
35903271 AAATGATGTT
* *
35903281 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT-ATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAATC
* * *
35903321 CGGACTAAGAT-CCGAAGGCATTTGTGAGAGTTACTA-ATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAATC
*
35903361 CGTGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATC
* *
35903400 CGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATC
*
35903440 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
35903464 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 36 0.29
40 79 0.64
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (41 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATC
Found at i:35903485 original size:79 final size:79
Alignment explanation
Indices: 35903332--35903496 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
35903322 GGACTAAGAT
* * **
35903332 CCGAAGGCATTTGTGAGAGTTACTAATTCCGTGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGAGAGTTACTAATACCGGGCTAAGTCCGAAGGCATTTGAACGAGTTACTAA
35903397 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
35903411 CCGAAGGCATTTGTGCA-AGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 CCGAAGGCATTTGTG-AGAGTTACTAAT-ACCGGGCTAAGT-CCGAAGGCATTTGAACGAGTTA-
* * *
35903473 CTATAT-CTGGTTAAGTT
62 CTAAATCCGGGTTAAGTC
35903490 CCGAAGG
1 CCGAAGG
35903497 TACATGATTC
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 2 0.03
79 49 0.66
80 23 0.31
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTTGTGAGAGTTACTAATACCGGGCTAAGTCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:35905895 original size:22 final size:22
Alignment explanation
Indices: 35905853--35905897 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
35905843 TTATTAACCC
*
35905853 AAATTAACTTGAATATAAATTA
1 AAATTAACTTAAATATAAATTA
*
35905875 AAATTAA-TTAAATTATGAATTA
1 AAATTAACTTAAA-TATAAATTA
35905897 A
1 A
35905898 TAAACATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (22 bp):
AAATTAACTTAAATATAAATTA
Found at i:35906058 original size:12 final size:11
Alignment explanation
Indices: 35906032--35906066 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 11
35906022 GAAAAAAACC
35906032 AAATTAA-TAA
1 AAATTAATTAA
35906042 AAATTAATTATA
1 AAATTAATTA-A
35906054 AAATTAATTAA
1 AAATTAATTAA
35906065 AA
1 AA
35906067 TTCAACATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.30
11 5 0.22
12 11 0.48
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
AAATTAATTAA
Found at i:35908837 original size:40 final size:41
Alignment explanation
Indices: 35908778--35908929 Score: 211
Period size: 40 Copynumber: 3.8 Consensus size: 41
35908768 CATTTGAATG
* * *
35908778 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
35908818 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
35908858 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
35908898 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
35908930 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 99 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:35908941 original size:80 final size:80
Alignment explanation
Indices: 35908778--35908949 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 80
35908768 CATTTGAATG
* * * * *
35908778 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
* *
35908843 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
35908858 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATACCCGGGCTAAGACCCGAAGGC
** *
35908922 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
35908938 ATATCC-GGCTAA
1 ATATCCGGGCTAA
35908950 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 6 0.08
80 71 0.90
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATACCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:35910870 original size:43 final size:43
Alignment explanation
Indices: 35910776--35910876 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 43
35910766 CCGAGATGTG
* * * * * * *
35910776 ATTACATGTAAGAACATGTCTGGGACATTGGCATTGTATTGTG
1 ATTACGTGTAAGACCATGTCTGGAACATTGACATCGTATTATA
35910819 ATTACGTGTAAGACCATGTCTGGAACATTGACATCGT-TATATA
1 ATTACGTGTAAGACCATGTCTGGAACATTGACATCGTAT-TATA
*
35910862 ATTTCGTGTAAGACC
1 ATTACGTGTAAGACC
35910877 CTATCCGAGA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 1 0.02
43 48 0.98
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.34
Consensus pattern (43 bp):
ATTACGTGTAAGACCATGTCTGGAACATTGACATCGTATTATA
Found at i:35913081 original size:48 final size:48
Alignment explanation
Indices: 35913013--35913231 Score: 266
Period size: 48 Copynumber: 4.6 Consensus size: 48
35913003 TAAAGTACCA
* * * * *
35913013 ATGCCATGTCCTAGGCATGGTCTTACATGAATCCACATA-A-CATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACA--AATGCACATATATCATCACCG
*
35913061 ATGCCATGTCCCAGACATGGTCTTAC-AATGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACAAAT-GCACATATATCATCACCG
* * *
35913109 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACAAATGCACATATATCATCACCG
* * *
35913157 ATGCCATGTCCCAGGCATGGTCTTACACA-GACACATATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACAAATG-CACATATATCATCACCG
35913205 ATGCCATGTCCCAGACATGGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
35913232 CGAAATCTCA
Statistics
Matches: 156, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
45 3 0.02
46 6 0.04
47 2 0.01
48 144 0.92
49 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACAAATGCACATATATCATCACCG
Found at i:35913232 original size:48 final size:48
Alignment explanation
Indices: 35913061--35913232 Score: 292
Period size: 48 Copynumber: 3.6 Consensus size: 48
35913051 AACATCGCCA
**
35913061 ATGCCATGTCCCAGACATGGTCTTACA-ATGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACA-GGCACATATATCATCATCG
35913109 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCATCG
* *
35913157 ATGCCATGTCCCAGGCATGGTCTTACACAGACACATATATCATCATCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCATCG
35913205 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
35913233 GAAATCTCAT
Statistics
Matches: 118, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
48 117 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCATCG
Found at i:35926762 original size:12 final size:12
Alignment explanation
Indices: 35926745--35926773 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
35926735 TTTCCACAGC
35926745 TCCATCGTCACA
1 TCCATCGTCACA
35926757 TCCATCGTCACA
1 TCCATCGTCACA
35926769 TCCAT
1 TCCAT
35926774 TATACGCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.41, G:0.07, T:0.28
Consensus pattern (12 bp):
TCCATCGTCACA
Found at i:35943145 original size:93 final size:92
Alignment explanation
Indices: 35942987--35943155 Score: 266
Period size: 93 Copynumber: 1.8 Consensus size: 92
35942977 CCCCTAAGTA
* **
35942987 AACTCGGACTCAACTCAACTAGCTCGGTGTTCGCATCCATAAGTGAACTCAGACTCAACTCAACG
1 AACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAACG
35943052 AGTTCGGATGCCTAGTTACATTTCACG
66 AGTTCGGATGCCTAGTTACATTTCACG
* * *
35943079 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCGATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
*
35943144 GAGTTTGGATGC
65 GAGTTCGGATGC
35943156 TCAACCATCC
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 25 0.36
93 44 0.64
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (92 bp):
AACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCAGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATTTCACG
Found at i:35943171 original size:46 final size:45
Alignment explanation
Indices: 35942981--35943163 Score: 133
Period size: 45 Copynumber: 4.0 Consensus size: 45
35942971 AACCCGCCCC
* * * ** * *
35942981 TAAGTAAACTCGGACTCAACTCAACTAGCTCGGTGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCA
*
35943026 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG-ATGC-CTAGTTA-CA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGC-A---ACCA
* * * * *
35943072 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCGA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCA
* *
35943119 TAAGTGAACTCGGACTCAACTCAACGAGTTTGG-ATGCTCAACCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCA
35943163 T
1 T
35943164 CCTAGTGACA
Statistics
Matches: 107, Mismatches: 20, Indels: 23
0.71 0.13 0.15
Matches are distributed among these distances:
43 1 0.01
44 11 0.10
45 31 0.29
46 29 0.27
47 28 0.26
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCA
Found at i:35945709 original size:48 final size:48
Alignment explanation
Indices: 35945633--35945731 Score: 135
Period size: 48 Copynumber: 2.1 Consensus size: 48
35945623 TAAGGTTATG
* *
35945633 TGTGATCCCATGTAAAACCATGTATGGGACATGGAATTGGCATCGATA
1 TGTGATCCCATGTAAAACCATATATGGGACAAGGAATTGGCATCGATA
* * * * *
35945681 TGTGATCCCATGTAAGACCATATCTGGGATAAGGTATTGGCATCTATA
1 TGTGATCCCATGTAAAACCATATATGGGACAAGGAATTGGCATCGATA
35945729 TGT
1 TGT
35945732 AATTTTGTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAAACCATATATGGGACAAGGAATTGGCATCGATA
Found at i:35953300 original size:48 final size:48
Alignment explanation
Indices: 35953244--35953376 Score: 169
Period size: 48 Copynumber: 2.8 Consensus size: 48
35953234 TAGGGTTATG
*
35953244 TGTGATCCCATGTAAGACCATGTATGGGACATGGCATTGGCAT-TGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCT-ATA
* * * *
35953292 TGTGATCCCATGTAAGACGATATCTGGGATAAGGCATTGGCATCTATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATA
****
35953340 TGTGATTTGGTGTAAGACCATGTCTGGGACATGGCAT
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCAT
35953377 CGATATGAGG
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
48 70 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATA
Found at i:35953409 original size:42 final size:42
Alignment explanation
Indices: 35953349--35953461 Score: 106
Period size: 43 Copynumber: 2.7 Consensus size: 42
35953339 ATGTGATTTG
35953349 GTGTAAGACCAT-GTCTGGGACATGGCATCGATATGAG-GCATC
1 GTGTAAGACCATAG-CTGGGACATGGCATCGATATGAGAGC-TC
* * *
35953391 GTGTAAGACCATAGCTGGG-CTATCGACATCGATATGTGATCTC
1 GTGTAAGACCATAGCTGGGAC-AT-GGCATCGATATGAGAGCTC
* * * *
35953434 ATGTACGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATAGCTGGGACATGGCAT
35953462 TGGGATCTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
41 1 0.02
42 23 0.40
43 33 0.57
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGACATGGCATCGATATGAGAGCTC
Found at i:35955450 original size:42 final size:44
Alignment explanation
Indices: 35955348--35955493 Score: 154
Period size: 42 Copynumber: 3.4 Consensus size: 44
35955338 TATGTGTTAT
* * * * * *
35955348 CGTGTAAGACAACGTCTGGGACGTTGGCATCGATTTGTGATTTA
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTA
35955392 CGTGTAAGACCATGTCTAGGACATTGGCATCG-TATATGATTT-
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTA
* * * * *
35955434 TGTGTAAGACCTTGTCTAGGACAGTGTCATCGATATTTGA-TTA
1 CGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTA
* *
35955477 CATGTAAGACCACGTCT
1 CGTGTAAGACCATGTCT
35955494 GGGATGCTGG
Statistics
Matches: 85, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
42 30 0.35
43 27 0.32
44 28 0.33
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTAGGACATTGGCATCGATATATGATTTA
Found at i:35958026 original size:20 final size:20
Alignment explanation
Indices: 35957998--35958042 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
35957988 CGGGCTGAGG
*
35957998 ACACGGGCATGTCCCAAGCC
1 ACACAGGCATGTCCCAAGCC
35958018 ACACAGGCATGTCCCAAGCC
1 ACACAGGCATGTCCCAAGCC
35958038 ACACA
1 ACACA
35958043 AGCGTGTGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.31, C:0.40, G:0.20, T:0.09
Consensus pattern (20 bp):
ACACAGGCATGTCCCAAGCC
Found at i:35962998 original size:42 final size:42
Alignment explanation
Indices: 35962922--35963074 Score: 180
Period size: 42 Copynumber: 3.6 Consensus size: 42
35962912 GCCATGGCTT
* ** * * * * *
35962922 AGACATCGTCTTACACGGGACCTCACATCGATGCCATGTCCT
1 AGACATGGTCTTACACGAAATCTCATATCAATGCCATATCCC
35962964 AGACATGGTCTTACACGAAATCTCATATCAATGCCATATCCC
1 AGACATGGTCTTACACGAAATCTCATATCAATGCCATATCCC
* * *
35963006 AGATATGGTCTTACATGAAATCTCATATCAATGTCATATCCC
1 AGACATGGTCTTACACGAAATCTCATATCAATGCCATATCCC
* * *
35963048 AGATATGGTCTTACATGAAATCACATA
1 AGACATGGTCTTACACGAAATCTCATA
35963075 CCGAGGCTGA
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 99 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.28
Consensus pattern (42 bp):
AGACATGGTCTTACACGAAATCTCATATCAATGCCATATCCC
Found at i:35963094 original size:48 final size:42
Alignment explanation
Indices: 35962954--35963110 Score: 161
Period size: 42 Copynumber: 3.6 Consensus size: 42
35962944 TCACATCGAT
* * * * * * *
35962954 GCCATGTCCTAGACATGGTCTTACACGAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCACATACCAAC
* * *
35962996 GCCATATCCCAGATATGGTCTTACATGAAATCTCATATCAAT
1 GCCATATCCCAGATATGGTCTTACATGAAATCACATACCAAC
*
35963038 GTCATATCCCAGATATGGTCTTACATGAAATCACATACCGAGGCTGAC
1 GCCATATCCCAGATATGGTCTTACATGAAATCACATACC-A-----AC
35963086 GCCATATCCCAGATATGGTCTTACA
1 GCCATATCCCAGATATGGTCTTACA
35963111 CTGGTACACA
Statistics
Matches: 100, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
42 74 0.74
43 1 0.01
48 25 0.25
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (42 bp):
GCCATATCCCAGATATGGTCTTACATGAAATCACATACCAAC
Found at i:35963121 original size:48 final size:49
Alignment explanation
Indices: 35963040--35963162 Score: 142
Period size: 48 Copynumber: 2.6 Consensus size: 49
35963030 ATATCAATGT
* * *
35963040 CATATCCCAGATATGGTCTTACA-TGAAATCACATACCGAGGCTGACGC
1 CATATCCCAGATATGGTCTTACACTGGAATCACATACCAAGGCCGACGC
* * * *
35963088 CATATCCCAGATATGGTCTTACACTGGTA-CACATATCAATGCCGATGC
1 CATATCCCAGATATGGTCTTACACTGGAATCACATACCAAGGCCGACGC
* * *
35963136 CATGTCCCAGACATTGTCTTACACTGG
1 CATATCCCAGATATGGTCTTACACTGG
35963163 CTCTCATTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 61 0.95
49 3 0.05
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (49 bp):
CATATCCCAGATATGGTCTTACACTGGAATCACATACCAAGGCCGACGC
Found at i:35968073 original size:39 final size:39
Alignment explanation
Indices: 35968030--35968239 Score: 188
Period size: 39 Copynumber: 5.4 Consensus size: 39
35968020 TTAAATTATT
* * * *
35968030 AATGTTATTTGATTATACAAGTAATGTGATATATGTTTA
1 AATGTTATGTGATTATACGAGTATTGTGATATATGCTTA
* ** *
35968069 AATGTCATGTGATTATGTGA-TATTGTGATATATGCTTG
1 AATGTTATGTGATTATACGAGTATTGTGATATATGCTTA
**
35968107 AATGTTATGAAATTATACGAGTATTGTGATATATGCTTA
1 AATGTTATGTGATTATACGAGTATTGTGATATATGCTTA
* ** * *
35968146 AATATTATGTGATTATTTGAGTACTGTGATATATGCTTG
1 AATGTTATGTGATTATACGAGTATTGTGATATATGCTTA
* * * * * * *
35968185 TATGTTAGGTGACTATATGTGTAATATGATATATGCTTA
1 AATGTTATGTGATTATACGAGTATTGTGATATATGCTTA
* *
35968224 AAAGTGAATGTGATTA
1 AATGT-TATGTGATTA
35968240 CCATCCAAAT
Statistics
Matches: 134, Mismatches: 35, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
38 30 0.22
39 97 0.72
40 7 0.05
ACGTcount: A:0.32, C:0.04, G:0.20, T:0.43
Consensus pattern (39 bp):
AATGTTATGTGATTATACGAGTATTGTGATATATGCTTA
Found at i:35968135 original size:77 final size:78
Alignment explanation
Indices: 35968041--35968191 Score: 223
Period size: 77 Copynumber: 1.9 Consensus size: 78
35968031 ATGTTATTTG
* * *
35968041 ATTATACAAGTAATGTGATATATGTTTAAATGTCATGTGATTATGTGA-TATTGTGATATATGCT
1 ATTATACAAGTAATGTGATATATGCTTAAATATCATGTGATTATGTGAGTACTGTGATATATGCT
35968105 TGAATGTTATGAA
66 TGAATGTTATGAA
* * * *
35968118 ATTATACGAGTATTGTGATATATGCTTAAATATTATGTGATTATTTGAGTACTGTGATATATGCT
1 ATTATACAAGTAATGTGATATATGCTTAAATATCATGTGATTATGTGAGTACTGTGATATATGCT
*
35968183 TGTATGTTA
66 TGAATGTTA
35968192 GGTGACTATA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
77 42 0.65
78 23 0.35
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.44
Consensus pattern (78 bp):
ATTATACAAGTAATGTGATATATGCTTAAATATCATGTGATTATGTGAGTACTGTGATATATGCT
TGAATGTTATGAA
Found at i:35968216 original size:78 final size:77
Alignment explanation
Indices: 35968043--35968225 Score: 222
Period size: 78 Copynumber: 2.4 Consensus size: 77
35968033 GTTATTTGAT
* * * *
35968043 TATACAAGTAATGTGATATATGTTTAAATGTCATGTGATTATGTGATATTGTGATATATGCTTGA
1 TATACGAGTAATGTGATATATGCTTAAATATCATGTGATTATGTGATACTGTGATATATGCTTGA
* *
35968108 ATGTTATGAAAT
66 ATGTTAGGAAAC
* * *
35968120 TATACGAGTATTGTGATATATGCTTAAATATTATGTGATTATTTGAGTACTGTGATATATGCTTG
1 TATACGAGTAATGTGATATATGCTTAAATATCATGTGATTATGTGA-TACTGTGATATATGCTTG
* **
35968185 TATGTTAGGTGAC
65 AATGTTAGGAAAC
* * *
35968198 TATATGTGTAATATGATATATGCTTAAA
1 TATACGAGTAATGTGATATATGCTTAAA
35968226 AGTGAATGTG
Statistics
Matches: 89, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
77 40 0.45
78 49 0.55
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (77 bp):
TATACGAGTAATGTGATATATGCTTAAATATCATGTGATTATGTGATACTGTGATATATGCTTGA
ATGTTAGGAAAC
Found at i:35970487 original size:44 final size:44
Alignment explanation
Indices: 35970344--35970494 Score: 136
Period size: 44 Copynumber: 3.5 Consensus size: 44
35970334 CAATGTCAAC
* *
35970344 GTCCCAGACGTGGTCTTACA--TATAATC-AAATATCGATGCCACT
1 GTCCCAGACGTGGTCTTACACGTA-AATCTCAA-ATCGATGCCAAT
* * **
35970387 GTCCTAGA-TTGGGTCTTACACG-AAA--TCAAATACGATGCTGAT
1 GTCCCAGACGT-GGTCTTACACGTAAATCTCAAAT-CGATGCCAAT
* * *
35970429 GTTCCAGACATGGTCTTACACGTAAATCTCAAATCGATACCAAT
1 GTCCCAGACGTGGTCTTACACGTAAATCTCAAATCGATGCCAAT
35970473 GTCCCAGACGTGGTCTTACACG
1 GTCCCAGACGTGGTCTTACACG
35970495 GAATCACATA
Statistics
Matches: 85, Mismatches: 14, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
41 2 0.02
42 27 0.32
43 22 0.26
44 28 0.33
45 6 0.07
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (44 bp):
GTCCCAGACGTGGTCTTACACGTAAATCTCAAATCGATGCCAAT
Found at i:35974776 original size:40 final size:39
Alignment explanation
Indices: 35974656--35974801 Score: 136
Period size: 40 Copynumber: 3.7 Consensus size: 39
35974646 TTGAATGCTG
* *
35974656 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTG-ATAAA
** *
35974696 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGAT-ACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TGA-TAAA
* * *
35974736 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGATAAA
*
35974776 TCCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
35974802 AACGAGGAGC
Statistics
Matches: 88, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
39 2 0.02
40 77 0.88
41 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGATAAA
Found at i:35975063 original size:190 final size:190
Alignment explanation
Indices: 35974740--35975118 Score: 749
Period size: 190 Copynumber: 2.0 Consensus size: 190
35974730 ACTAAATCCG
35974740 GGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGCTATGTCCCGAAGGCATTTGAAC
1 GGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGCTATGTCCCGAAGGCATTTGAAC
35974805 GAGGAGCTATATCCGGTTAAATCCCGAAGGTACGTGATTTGGAAATGAATGAGCTTGCTGTAAAA
66 GAGGAGCTATATCCGGTTAAATCCCGAAGGTACGTGATTTGGAAATGAATGAGCTTGCTGTAAAA
*
35974870 TTCCAGCGAATACTCGAAAAACATCCCAATATGGGGATATGTTACGTATGTGTTGAATTA
131 TTCCAGCGAATACTCGAAAAACATCCCAATATGGGGATATGTTACGTATGTGTTAAATTA
35974930 GGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGCTATGTCCCGAAGGCATTTGAAC
1 GGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGCTATGTCCCGAAGGCATTTGAAC
35974995 GAGGAGCTATATCCGGTTAAATCCCGAAGGTACGTGATTTGGAAATGAATGAGCTTGCTGTAAAA
66 GAGGAGCTATATCCGGTTAAATCCCGAAGGTACGTGATTTGGAAATGAATGAGCTTGCTGTAAAA
35975060 TTCCAGCGAATACTCGAAAAACATCCCAATATGGGGATATGTTACGTATGTGTTAAATT
131 TTCCAGCGAATACTCGAAAAACATCCCAATATGGGGATATGTTACGTATGTGTTAAATT
35975119 TAATCGAGCC
Statistics
Matches: 188, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
190 188 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (190 bp):
GGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGCTATGTCCCGAAGGCATTTGAAC
GAGGAGCTATATCCGGTTAAATCCCGAAGGTACGTGATTTGGAAATGAATGAGCTTGCTGTAAAA
TTCCAGCGAATACTCGAAAAACATCCCAATATGGGGATATGTTACGTATGTGTTAAATTA
Found at i:35981198 original size:44 final size:41
Alignment explanation
Indices: 35981062--35981209 Score: 129
Period size: 43 Copynumber: 3.5 Consensus size: 41
35981052 AATGACAACA
* * * *
35981062 TCCCAGACGTGGTCTTACACA-CAATCAAATATCGATGCCACTA
1 TCCCAGACATGGTCTTACA-ATAAATCAAATA-C-ATGCCAATG
* * *
35981105 TCCCAGACAGGGTCTTACACTAAATCAAATACGATGCCGATG
1 TCCCAGACATGGTCTTACAATAAATCAAATAC-ATGCCAATG
*
35981147 TCGCAGACATGGTCTTACATATAAATCTCAAATTA-ATGCCAATG
1 TCCCAGACATGGTCTTACA-ATAAA--TCAAA-TACATGCCAATG
*
35981191 TCCCAGACATGGTGTTACA
1 TCCCAGACATGGTCTTACA
35981210 CGAAATCACA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
42 25 0.29
43 30 0.34
44 25 0.29
45 5 0.06
46 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACAATAAATCAAATACATGCCAATG
Found at i:36002334 original size:18 final size:18
Alignment explanation
Indices: 36002311--36002358 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
36002301 GTACTATGTT
36002311 ACATTATAAAATTATTTC
1 ACATTATAAAATTATTTC
* *
36002329 ACATTATAATATTATTTT
1 ACATTATAAAATTATTTC
36002347 A-ATTATATAAAT
1 ACATTATA-AAAT
36002359 ATAAATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 6 0.23
18 20 0.77
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (18 bp):
ACATTATAAAATTATTTC
Found at i:36002584 original size:25 final size:25
Alignment explanation
Indices: 36002556--36002611 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 25
36002546 TCTTTTGTTG
*
36002556 ATAAAAAATCATTATATTTAATTTT
1 ATAAAAAATCATTATAATTAATTTT
** **
36002581 ATAATTAATTTTTATAATTAATTTT
1 ATAAAAAATCATTATAATTAATTTT
36002606 A-AAAAA
1 ATAAAAA
36002612 TATGTTTATT
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
ATAAAAAATCATTATAATTAATTTT
Found at i:36002588 original size:12 final size:12
Alignment explanation
Indices: 36002567--36002606 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
36002557 TAAAAAATCA
*
36002567 TTATATTTAATT
1 TTATAATTAATT
36002579 TTATAATTAATTT
1 TTATAATTAA-TT
36002592 TTATAATTAATT
1 TTATAATTAATT
36002604 TTA
1 TTA
36002607 AAAAATATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 14 0.54
13 12 0.46
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATAATTAATT
Found at i:36002595 original size:13 final size:13
Alignment explanation
Indices: 36002567--36002605 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
36002557 TAAAAAATCA
*
36002567 TTATATTTAA-TT
1 TTATAATTAATTT
36002579 TTATAATTAATTT
1 TTATAATTAATTT
36002592 TTATAATTAATTT
1 TTATAATTAATTT
36002605 T
1 T
36002606 AAAAAATATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 9 0.36
13 16 0.64
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TTATAATTAATTT
Found at i:36007300 original size:12 final size:12
Alignment explanation
Indices: 36007283--36007312 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
36007273 AAAATTAGTT
36007283 CTTTTAATGTCA
1 CTTTTAATGTCA
36007295 CTTTTAATGTCA
1 CTTTTAATGTCA
36007307 CTTTTA
1 CTTTTA
36007313 GCTCTTTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.17, G:0.07, T:0.53
Consensus pattern (12 bp):
CTTTTAATGTCA
Found at i:36010085 original size:43 final size:43
Alignment explanation
Indices: 36010004--36010089 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
36009994 GATATATGTG
* * *
36010004 GCATCCGAGCTCGTTGAGTGGTTTGAGATCAATTTGGATGCGA
1 GCATCCGAGCTCGTTGAATGGTTCGAGATCAATATGGATGCGA
*
36010047 GCATCCGAGCTCGTTGAATGGTTCGAGTTC-ATAATGGATGCGA
1 GCATCCGAGCTCGTTGAATGGTTCGAGATCAAT-ATGGATGCGA
36010090 CACATGTGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 2 0.05
43 36 0.95
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAATGGTTCGAGATCAATATGGATGCGA
Found at i:36018324 original size:27 final size:26
Alignment explanation
Indices: 36018290--36018384 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 26
36018280 TGGATAAGTT
*
36018290 GTAGAATTATTGAAATACCCTTGTAAG
1 GTAGAATTATCGAAATACCC-TGTAAG
*
36018317 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATA-CCCTGTAAG
* *
36018344 GTAGAATTACCGAAATAACCCTGTACG
1 GTAGAATTATCGAAAT-ACCCTGTAAG
* *
36018371 ATAGAATTACCGAA
1 GTAGAATTATCGAA
36018385 TAACTGTAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
27 57 0.93
28 4 0.07
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (26 bp):
GTAGAATTATCGAAATACCCTGTAAG
Found at i:36021282 original size:27 final size:27
Alignment explanation
Indices: 36021252--36021516 Score: 345
Period size: 27 Copynumber: 9.8 Consensus size: 27
36021242 TGTTACAATA
* *
36021252 ACCCTTGTAGGGTAGAATTTCTGAAAT
1 ACCCTTGTAGGGTAGAATTACCGAAAT
*
36021279 ACCCTTGTAGGGTAGAATTACTGAAAT
1 ACCCTTGTAGGGTAGAATTACCGAAAT
* * *
36021306 ACCCCTGTAGGGTAGAATTATCAAAAT
1 ACCCTTGTAGGGTAGAATTACCGAAAT
*
36021333 ACCCCTGTAGGGTAGAATTACCGAAAT
1 ACCCTTGTAGGGTAGAATTACCGAAAT
** *
36021360 A-CCTCTGTAGGGTAGAATTATTGGAAT
1 ACCCT-TGTAGGGTAGAATTACCGAAAT
*
36021387 ACCCCTGTAGGGTAGAATTACCGAAAT
1 ACCCTTGTAGGGTAGAATTACCGAAAT
* * *
36021414 ACCCCTGTAGGATAGAATTACTGAAAT
1 ACCCTTGTAGGGTAGAATTACCGAAAT
*
36021441 ACCCTTGTAGGGTAGAAATACCGAAAT
1 ACCCTTGTAGGGTAGAATTACCGAAAT
*
36021468 ACCCTTGTAGGGTAGAATTACCGAGAT
1 ACCCTTGTAGGGTAGAATTACCGAAAT
*
36021495 ACCCTTGT-GGAGTAAAATTACC
1 ACCCTTGTAGG-GTAGAATTACC
36021517 ATTTTTCCCC
Statistics
Matches: 211, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
26 4 0.02
27 205 0.97
28 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (27 bp):
ACCCTTGTAGGGTAGAATTACCGAAAT
Found at i:36027389 original size:27 final size:27
Alignment explanation
Indices: 36027359--36027718 Score: 461
Period size: 27 Copynumber: 13.3 Consensus size: 27
36027349 GGATAAGTTA
*
36027359 TAGAATTACCGAAATACCCCTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
36027386 TAGAATTATCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
36027413 TAGAATTACCGAAATACCCCTGTACGA
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
36027440 TAGAATTACCGAAATACTCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* ** *
36027467 TAGAATTTCTAAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
** *
36027494 TAGAATTATTGAAATACCCCTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
36027521 TAGAATTATCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
36027548 TAGAATTACCGAAATACCCCAGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
*
36027575 TAGAATTACCGAAATACCCTTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* * *
36027602 TAGAATTACCGAAATGCCCCTATAGGA
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
36027629 TAGAATTACCGAAATACCCTTATAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* *
36027656 TAGAAATACTGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAGGG
* * *
36027683 TAGAATTATCGAGATACCCTTGT-GGAG
1 TAGAATTACCGAAATACCCCTGTAGG-G
*
36027710 TAAAATTAC
1 TAGAATTAC
36027719 AATTTTGCCC
Statistics
Matches: 290, Mismatches: 42, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
26 2 0.01
27 288 0.99
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAGGG
Found at i:36027736 original size:27 final size:27
Alignment explanation
Indices: 36027706--36027757 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
36027696 ATACCCTTGT
*
36027706 GGAGTAAAATTACAATTTTGCCCCTAG
1 GGAGTAAAATGACAATTTTGCCCCTAG
* *
36027733 GGAGTTAAATGACTATTTTGCCCCT
1 GGAGTAAAATGACAATTTTGCCCCT
36027758 CGTGCGTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (27 bp):
GGAGTAAAATGACAATTTTGCCCCTAG
Found at i:36032666 original size:81 final size:81
Alignment explanation
Indices: 36032528--36032791 Score: 286
Period size: 81 Copynumber: 3.3 Consensus size: 81
36032518 GACCCCAGTT
** ** * *
36032528 TGTAAAATTACTAAAATACCCTTAAATTGTAAAATTACCAAAATACC-CTCGAATTGTAAAATTA
1 TGTAAAATTACCGAAATACCCCCAGATTGTAAAATTACCAAAATACCTCT-GATTTGTAAAATTA
*
36032592 CCAAAATACCCCCGATA
65 CCAAAATACCCCTGATA
* * *
36032609 TGTAAAATTACTGAAATACCCCCAGATTGTAAAATTATCGAAATACCTCTGATTTGTAAAATTAC
1 TGTAAAATTACCGAAATACCCCCAGATTGTAAAATTACCAAAATACCTCTGATTTGTAAAATTAC
* * *
36032674 CAGAATA-CCCTAATT
66 CAAAATACCCCTGATA
*
36032689 TGTAAAATTACCGAAATACCCCCAGAATT-TAAAATTACCAAAATACCTC-CAGTTTGTAAAATT
1 TGTAAAATTACCGAAATACCCCCAG-ATTGTAAAATTACCAAAATACCTCTGA-TTTGTAAAATT
** * * *
36032752 GTCAAACTACACTTG-TA
64 ACCAAAATACCCCTGATA
36032769 GTGTAAAATTACCGAAATACCCC
1 -TGTAAAATTACCGAAATACCCC
36032792 TGTAGGGTAA
Statistics
Matches: 155, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
79 1 0.01
80 64 0.41
81 88 0.57
82 2 0.01
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (81 bp):
TGTAAAATTACCGAAATACCCCCAGATTGTAAAATTACCAAAATACCTCTGATTTGTAAAATTAC
CAAAATACCCCTGATA
Found at i:36032740 original size:27 final size:27
Alignment explanation
Indices: 36032519--36032751 Score: 212
Period size: 27 Copynumber: 8.7 Consensus size: 27
36032509 GGTCGTTAAG
* *
36032519 ACCCCAG-TTTGTAAAATTACTAAAAT
1 ACCCCAGAATTGTAAAATTACCAAAAT
*
36032545 ACCCTTA-AATTGTAAAATTACCAAAAT
1 ACCC-CAGAATTGTAAAATTACCAAAAT
36032572 ACCCTC-GAATTGTAAAATTACCAAAAT
1 ACCC-CAGAATTGTAAAATTACCAAAAT
* **
36032599 ACCCCCG-ATATGTAAAATTACTGAAAT
1 ACCCCAGAAT-TGTAAAATTACCAAAAT
* *
36032626 ACCCCCAG-ATTGTAAAATTATCGAAAT
1 A-CCCCAGAATTGTAAAATTACCAAAAT
* * * *
36032653 ACCTCTGATTTGTAAAATTACCAGAAT
1 ACCCCAGAATTGTAAAATTACCAAAAT
* * *
36032680 ACCCTA-ATTTGTAAAATTACCGAAAT
1 ACCCCAGAATTGTAAAATTACCAAAAT
36032706 ACCCCCAGAATT-TAAAATTACCAAAAT
1 A-CCCCAGAATTGTAAAATTACCAAAAT
*
36032733 ACCTCCAG-TTTGTAAAATT
1 ACC-CCAGAATTGTAAAATT
36032752 GTCAAACTAC
Statistics
Matches: 172, Mismatches: 24, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
26 34 0.20
27 128 0.74
28 10 0.06
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
ACCCCAGAATTGTAAAATTACCAAAAT
Found at i:36032774 original size:107 final size:107
Alignment explanation
Indices: 36032555--36032790 Score: 286
Period size: 107 Copynumber: 2.2 Consensus size: 107
36032545 ACCCTTAAAT
*
36032555 TGTAAAATTACCAAAATACCCTCGAATTGTAAAATTACCAAAATACCCCCGATATGTAAAATTAC
1 TGTAAAATTACCAGAATACCCTC-AATTGTAAAATTACCAAAATACCCCCGATATGTAAAATTAC
** *
36032620 TGAAATACCCCCAGATTGTAAAATTATCGAAATACCTCTGATT
65 CAAAATACCCCCAGATTGTAAAATTATCGAAATACCTCTGATG
* *
36032663 TGTAAAATTACCAGAATACCCT-AATTTGTAAAATTACCGAAATACCCCCAGA-ATTTAAAATTA
1 TGTAAAATTACCAGAATACCCTCAA-TTGTAAAATTACCAAAATACCCCC-GATATGTAAAATTA
* * *
36032726 CCAAAATACCTCCAGTTTGTAAAATTGTC-AAACTACACT-TG-TAG
64 CCAAAATACCCCCAGATTGTAAAATTATCGAAA-TAC-CTCTGAT-G
36032770 TGTAAAATTACC-GAAATACCC
1 TGTAAAATTACCAG-AATACCC
36032791 CTGTAGGGTA
Statistics
Matches: 113, Mismatches: 9, Indels: 13
0.84 0.07 0.10
Matches are distributed among these distances:
106 7 0.06
107 81 0.72
108 25 0.22
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (107 bp):
TGTAAAATTACCAGAATACCCTCAATTGTAAAATTACCAAAATACCCCCGATATGTAAAATTACC
AAAATACCCCCAGATTGTAAAATTATCGAAATACCTCTGATG
Found at i:36032795 original size:27 final size:27
Alignment explanation
Indices: 36032519--36032804 Score: 194
Period size: 27 Copynumber: 10.7 Consensus size: 27
36032509 GGTCGTTAAG
* *
36032519 ACCCCAGT-TTGTAAAATTACTAAAAT
1 ACCCCTGTATTGTAAAATTACCAAAAT
* **
36032545 ACCCTTAAATTGTAAAATTACCAAAAT
1 ACCCCTGTATTGTAAAATTACCAAAAT
*
36032572 A-CCCTCGAATTGTAAAATTACCAAAAT
1 ACCCCT-GTATTGTAAAATTACCAAAAT
* **
36032599 ACCCCCG-ATATGTAAAATTACTGAAAT
1 ACCCCTGTAT-TGTAAAATTACCAAAAT
* * *
36032626 ACCCCCAG-ATTGTAAAATTATCGAAAT
1 A-CCCCTGTATTGTAAAATTACCAAAAT
* *
36032653 ACCTCTG-ATTTGTAAAATTACCAGAAT
1 ACCCCTGTA-TTGTAAAATTACCAAAAT
* *
36032680 A-CCCT-AATTTGTAAAATTACCGAAAT
1 ACCCCTGTA-TTGTAAAATTACCAAAAT
* *
36032706 ACCCCCAGAATT-TAAAATTACCAAAAT
1 A-CCCCTGTATTGTAAAATTACCAAAAT
* ** *
36032733 ACCTCCAGT-TTGTAAAATTGTCAAACT
1 ACC-CCTGTATTGTAAAATTACCAAAAT
* * * *
36032760 ACACTTGTAGTGTAAAATTACCGAAAT
1 ACCCCTGTATTGTAAAATTACCAAAAT
**
36032787 ACCCCTGTAGGGTAAAAT
1 ACCCCTGTATTGTAAAAT
36032805 GACTATTTTG
Statistics
Matches: 209, Mismatches: 38, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
26 43 0.21
27 149 0.71
28 15 0.07
29 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (27 bp):
ACCCCTGTATTGTAAAATTACCAAAAT
Found at i:36036973 original size:27 final size:26
Alignment explanation
Indices: 36036940--36037202 Score: 249
Period size: 27 Copynumber: 9.7 Consensus size: 26
36036930 AGACCTCGAT
*
36036940 TTGTAAAATTATTGAAATACCCTCAAAA
1 TTGTAAAATTATCGAAATACCC-C-AAA
*
36036968 TT-TAAAATTACCGAAATACCCCTAAA
1 TTGTAAAATTATCGAAATACCCC-AAA
* *
36036994 TTGTAAAATTACCGAAATACCCTCAAT
1 TTGTAAAATTATCGAAATACCC-CAAA
*
36037021 TTGTAAAATTATCGAAATACCCCTAGA
1 TTGTAAAATTATCGAAATACCCC-AAA
* **
36037048 TTGTAAAATTATCAAAATACCCCCACT
1 TTGTAAAATTATCGAAATA-CCCCAAA
36037075 TTGTAAAATTATCGAAATACCCTCAAA
1 TTGTAAAATTATCGAAATACCC-CAAA
* * *
36037102 TTGTAAAATTACCAAAATACCCCCAGA
1 TTGTAAAATTATCGAAATA-CCCCAAA
* **
36037129 TTGTAAAAATTACCGAAATACCCCCATT
1 TTGT-AAAATTATCGAAATA-CCCCAAA
* ***
36037157 TTGTAAAAATATCGAAATACCCTTGTA
1 TTGTAAAATTATCGAAATACCC-CAAA
*
36037184 GTGTAAAATTATCGAAATA
1 TTGTAAAATTATCGAAATA
36037203 TCCCTGTTGG
Statistics
Matches: 201, Mismatches: 26, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
26 13 0.06
27 154 0.77
28 34 0.17
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (26 bp):
TTGTAAAATTATCGAAATACCCCAAA
Found at i:36037028 original size:54 final size:54
Alignment explanation
Indices: 36036940--36037179 Score: 279
Period size: 54 Copynumber: 4.4 Consensus size: 54
36036930 AGACCTCGAT
* *
36036940 TTGTAAAATTATTGAAATACCCTCAAAATT-TAAAATTACCGAAATACCCCTAAA
1 TTGTAAAATTATCGAAATACCCTC-AATTTGTAAAATTACCGAAATACCCCTAAA
* * *
36036994 TTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTATCGAAATACCCCTAGA
1 TTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACCGAAATACCCCTAAA
* * * *
36037048 TTGTAAAATTATCAAAATACCCCCACTTTGTAAAATTATCGAAATA-CCCTCAAA
1 TTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACCGAAATACCCCT-AAA
* * * * **
36037102 TTGTAAAATTACCAAAATACCCCCAGA-TTGTAAAAATTACCGAAATACCCCCATT
1 TTGTAAAATTATCGAAATACCCTCA-ATTTGT-AAAATTACCGAAATACCCCTAAA
*
36037157 TTGTAAAAATATCGAAATACCCT
1 TTGTAAAATTATCGAAATACCCT
36037180 TGTAGTGTAA
Statistics
Matches: 161, Mismatches: 20, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
53 8 0.05
54 116 0.72
55 34 0.21
56 3 0.02
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (54 bp):
TTGTAAAATTATCGAAATACCCTCAATTTGTAAAATTACCGAAATACCCCTAAA
Found at i:36037079 original size:81 final size:81
Alignment explanation
Indices: 36036933--36037207 Score: 329
Period size: 81 Copynumber: 3.4 Consensus size: 81
36036923 GTCGTTAAGA
* * * * * *
36036933 CCTCGATTTGTAAAATTATTGAAATACCCTCAAAATT-TAAAATTACCGAAATACCCCTAAATTG
1 CCTCAATTTGTAAAATTATCGAAATACCC-CTAGATTGTAAAATTACCGAAATACCCCCAATTTG
*
36036997 TAAAATTACCGAAATAC
65 TAAAATTATCGAAATAC
* * *
36037014 CCTCAATTTGTAAAATTATCGAAATACCCCTAGATTGTAAAATTATCAAAATACCCCCACTTTGT
1 CCTCAATTTGTAAAATTATCGAAATACCCCTAGATTGTAAAATTACCGAAATACCCCCAATTTGT
36037079 AAAATTATCGAAATAC
66 AAAATTATCGAAATAC
* * * * *
36037095 CCTCAAATTGTAAAATTACCAAAATACCCCCAGATTGTAAAAATTACCGAAATACCCCCATTTTG
1 CCTCAATTTGTAAAATTATCGAAATACCCCTAGATTGT-AAAATTACCGAAATACCCCCAATTTG
*
36037160 TAAAAATATCGAAATAC
65 TAAAATTATCGAAATAC
** * *
36037177 CCT-TGTAGTGTAAAATTATCGAAATATCCCT
1 CCTCAAT-TTGTAAAATTATCGAAATACCCCT
36037208 GTTGGGTAAA
Statistics
Matches: 165, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
80 5 0.03
81 99 0.60
82 61 0.37
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
CCTCAATTTGTAAAATTATCGAAATACCCCTAGATTGTAAAATTACCGAAATACCCCCAATTTGT
AAAATTATCGAAATAC
Found at i:36037216 original size:27 final size:27
Alignment explanation
Indices: 36037159--36037219 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
36037149 CCCCCATTTT
* *
36037159 GTAAAAATATCGAAATACCCTTGTAGT
1 GTAAAATTATCGAAATACCCTTGTAGG
*
36037186 GTAAAATTATCGAAATATCCC-TGTTGG
1 GTAAAATTATCGAAATA-CCCTTGTAGG
36037213 GTAAAAT
1 GTAAAAT
36037220 GACTGTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.31
Consensus pattern (27 bp):
GTAAAATTATCGAAATACCCTTGTAGG
Found at i:36038040 original size:32 final size:32
Alignment explanation
Indices: 36038004--36038066 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
36037994 TGTCACTATA
*
36038004 TTGGGCTTAGGCCCACTTG-TTCTGTTATTGGT
1 TTGGGC-TAGGCCCAATTGATTCTGTTATTGGT
*
36038036 TTGGGCTAGGTCCAATTGATTCTGTTATTGG
1 TTGGGCTAGGCCCAATTGATTCTGTTATTGG
36038067 CTGTGACCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 10 0.36
32 18 0.64
ACGTcount: A:0.13, C:0.16, G:0.29, T:0.43
Consensus pattern (32 bp):
TTGGGCTAGGCCCAATTGATTCTGTTATTGGT
Found at i:36042725 original size:81 final size:81
Alignment explanation
Indices: 36042623--36042786 Score: 301
Period size: 81 Copynumber: 2.0 Consensus size: 81
36042613 GACACCATAC
* *
36042623 TTTATCAAGCCCATCTTACCAACTCTCACTTAAGTCATGGTTATCATCTTATTAAACAAATCCCA
1 TTTATCAAGCCCATCTTACCAACTCTCACCTAAGTCATGGTTATCATCATATTAAACAAATCCCA
36042688 ATTAAATCTTCAAGCA
66 ATTAAATCTTCAAGCA
*
36042704 TTTATCAAGCCCATCTTACCAATTCTCACCTAAGTCATGGTTATCATCATATTAAACAAATCCCA
1 TTTATCAAGCCCATCTTACCAACTCTCACCTAAGTCATGGTTATCATCATATTAAACAAATCCCA
36042769 ATTAAATCTTCAAGCA
66 ATTAAATCTTCAAGCA
36042785 TT
1 TT
36042787 CATAGAAACA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.34
Consensus pattern (81 bp):
TTTATCAAGCCCATCTTACCAACTCTCACCTAAGTCATGGTTATCATCATATTAAACAAATCCCA
ATTAAATCTTCAAGCA
Found at i:36052309 original size:43 final size:43
Alignment explanation
Indices: 36052189--36052332 Score: 143
Period size: 43 Copynumber: 3.3 Consensus size: 43
36052179 AACTCTTACA
* * * *
36052189 ATGCCAACGTCCCAGACGTGGCCTTACATGT-AATCAAATATCA
1 ATGCCAACGTCCCAGACATGGACTTACACGTAAATCAAATA-CG
* *
36052232 ATGCC-ACTGTCCCAGACAAGGACTTACAC-AAAATCAAATACG
1 ATGCCAAC-GTCCCAGACATGGACTTACACGTAAATCAAATACG
* * *
36052274 ATGCCAATGTCCCAGACATTGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACATGGACTTACACGTAAATCA-AA-TACG
36052318 ATGCCAACGTCCCAG
1 ATGCCAACGTCCCAG
36052333 GTGTGGTCTT
Statistics
Matches: 83, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
42 26 0.31
43 38 0.46
44 18 0.22
45 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGACTTACACGTAAATCAAATACG
Found at i:36071140 original size:30 final size:30
Alignment explanation
Indices: 36071080--36071142 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
36071070 TATGATATGG
* *
36071080 TATCTTGGATTTCTGTACCTTGGATATCTT
1 TATCTTGGATTCCTCTACCTTGGATATCTT
* * *
36071110 TATCTTGGATTCCTCTGCCTTTGATTTCTT
1 TATCTTGGATTCCTCTACCTTGGATATCTT
36071140 TAT
1 TAT
36071143 TCTAGTTTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.14, C:0.19, G:0.14, T:0.52
Consensus pattern (30 bp):
TATCTTGGATTCCTCTACCTTGGATATCTT
Found at i:36074200 original size:28 final size:29
Alignment explanation
Indices: 36074158--36074272 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
36074148 TACCTGTATC
* * *
36074158 TGGCCTATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
36074186 TGGCCCATTACGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* * *
36074215 TGGCCAATTTGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
36074244 TGGCCCATTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
36074272 T
1 T
36074273 TCATGTTCAC
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 26 0.36
29 45 0.62
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:36074259 original size:58 final size:57
Alignment explanation
Indices: 36074149--36074259 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
36074139 AATTTCACAT
* * *
36074149 ACCTGTATCTGGCCTATTAAGCCCAATCATATTCATATGGCCCATTACGCCCAAATC
1 ACCTGTATATGGCCAATTAAGCCCAATCACATTCATATGGCCCATTACGCCCAAATC
** * *
36074206 ACCTGTATATGGCCAATTTGGCCCAAATCACATTTATATGGCCCATTAGGCCCA
1 ACCTGTATATGGCCAATTAAGCCC-AATCACATTCATATGGCCCATTACGCCCA
36074260 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 20 0.43
58 26 0.57
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (57 bp):
ACCTGTATATGGCCAATTAAGCCCAATCACATTCATATGGCCCATTACGCCCAAATC
Found at i:36074517 original size:15 final size:15
Alignment explanation
Indices: 36074499--36074532 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
36074489 CTTTTTGGTA
* *
36074499 TTTTGGCTTTTCTGC
1 TTTTGGCATTTCAGC
36074514 TTTTGGCATTTCAGC
1 TTTTGGCATTTCAGC
36074529 TTTT
1 TTTT
36074533 ACCGATACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.18, G:0.18, T:0.59
Consensus pattern (15 bp):
TTTTGGCATTTCAGC
Found at i:36082916 original size:49 final size:49
Alignment explanation
Indices: 36082859--36082957 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
36082849 GATAACAGTA
36082859 CACAGTGGACCGAAGCCCTTTTCAGAATACAATAGCAAGGCCTTAGCCC
1 CACAGTGGACCGAAGCCCTTTTCAGAATACAATAGCAAGGCCTTAGCCC
36082908 CACAGTGGACCGAAGCCCTTTTCAGAATACAATAGCAAGGCCTTAGCCC
1 CACAGTGGACCGAAGCCCTTTTCAGAATACAATAGCAAGGCCTTAGCCC
36082957 C
1 C
36082958 TTTTTAGATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.18
Consensus pattern (49 bp):
CACAGTGGACCGAAGCCCTTTTCAGAATACAATAGCAAGGCCTTAGCCC
Found at i:36083367 original size:60 final size:60
Alignment explanation
Indices: 36083274--36083396 Score: 237
Period size: 60 Copynumber: 2.0 Consensus size: 60
36083264 AAATACGGTA
*
36083274 TTAATCAATCATGCTGTTTAGCCAATTTAAACCCTAGGGGTATTTCAGTAATTATGCTCT
1 TTAATCAATCATGCCGTTTAGCCAATTTAAACCCTAGGGGTATTTCAGTAATTATGCTCT
36083334 TTAATCAATCATGCCGTTTAGCCAATTTAAACCCTAGGGGTATTTCAGTAATTATGCTCT
1 TTAATCAATCATGCCGTTTAGCCAATTTAAACCCTAGGGGTATTTCAGTAATTATGCTCT
36083394 TTA
1 TTA
36083397 GGGGTAATTT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (60 bp):
TTAATCAATCATGCCGTTTAGCCAATTTAAACCCTAGGGGTATTTCAGTAATTATGCTCT
Found at i:36083849 original size:76 final size:76
Alignment explanation
Indices: 36083751--36083902 Score: 268
Period size: 76 Copynumber: 2.0 Consensus size: 76
36083741 GACGACTGCT
* *
36083751 ACTGAGATCTCTTCCAATGTCCTACAATTGATTAGCACAGTTCTTATTTACAAACCATAATCACT
1 ACTGAGATCCCTTCCAATGTCCTACAATTGATTAGCACAATTCTTATTTACAAACCATAATCACT
36083816 AAACCCACAAC
66 AAACCCACAAC
* *
36083827 ACTGAGATCCCTTCCGATGTCCTACAATTGATTAGCACAATTCTTCTTTACAAACCATAATCACT
1 ACTGAGATCCCTTCCAATGTCCTACAATTGATTAGCACAATTCTTATTTACAAACCATAATCACT
36083892 AAACCCACAAC
66 AAACCCACAAC
36083903 CTACTTATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 72 1.00
ACGTcount: A:0.35, C:0.29, G:0.08, T:0.28
Consensus pattern (76 bp):
ACTGAGATCCCTTCCAATGTCCTACAATTGATTAGCACAATTCTTATTTACAAACCATAATCACT
AAACCCACAAC
Found at i:36094339 original size:47 final size:48
Alignment explanation
Indices: 36094268--36094494 Score: 193
Period size: 47 Copynumber: 4.9 Consensus size: 48
36094258 GAGAAGGTAT
* * * * *
36094268 CGATGCCATGTCCTAGGCACGGTCTTATACTGGCTCAT-ATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGC
* **
36094315 CGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTTGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATC-TCAAGC
* * * * *
36094363 CGAT-ACATGTCCCAAACAT-GTCTTACATTGGCTTA-CGTCTCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAA-GC
* * * * *
36094409 CGTTG-CATGTCCCAGACAT-ATCTTACACTAGC-CCTCGTCTCGAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGC
*
36094455 CGATGCCATATCCCAGACATGGTCTTACACTGGCTC-TCAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAT
36094495 AATGTGGCCG
Statistics
Matches: 143, Mismatches: 27, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
45 2 0.01
46 57 0.40
47 62 0.43
48 21 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGC
Found at i:36097521 original size:42 final size:42
Alignment explanation
Indices: 36097421--36097566 Score: 141
Period size: 43 Copynumber: 3.4 Consensus size: 42
36097411 ATGCCAACGT
* * * * * *
36097421 CCAGACGTGGTCTTACATGTAATCAAATATCGATGCCATTGTC
1 CCAGACATGGTCTTACACGAAATCAAATA-CGATACCAATATC
* *
36097464 CCAGATAGGGTCTTACACGAAATCAAATACGATACCAATATC
1 CCAGACATGGTCTTACACGAAATCAAATACGATACCAATATC
* *
36097506 CCAGACATGGTCTTACACATAAATCATAAGT-CGATACCAACATC
1 CCAGACATGGTCTTACAC-GAAATCA-AA-TACGATACCAATATC
* *
36097550 CTAGACGTGGTCTTACA
1 CCAGACATGGTCTTACA
36097567 TGATAACAAA
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
42 26 0.30
43 30 0.35
44 29 0.34
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
CCAGACATGGTCTTACACGAAATCAAATACGATACCAATATC
Found at i:36098919 original size:18 final size:18
Alignment explanation
Indices: 36098892--36098927 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
36098882 ATTTCTCCTA
*
36098892 GTTAAGGACAAGATTTTT
1 GTTAAAGACAAGATTTTT
36098910 GTTAAAGACAAGATTTTT
1 GTTAAAGACAAGATTTTT
36098928 CTCTTTGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.39
Consensus pattern (18 bp):
GTTAAAGACAAGATTTTT
Found at i:36105146 original size:43 final size:42
Alignment explanation
Indices: 36105056--36105206 Score: 146
Period size: 43 Copynumber: 3.6 Consensus size: 42
36105046 TCTGGTACTG
* *
36105056 TAGTACATCATCAGATAAACCAAAGAA-AATATTCTGGCACAC-
1 TAGTGCATCATCAGATAAACCAAAGAATTATA-T-TGGCACACA
*
36105098 -AGTGCATTATCAGATAAACCAAAGAATGTATATTGGCACACA
1 TAGTGCATCATCAGATAAACCAAAGAAT-TATATTGGCACACA
** * * * * *
36105140 TAGTGCATCATTGGACAAGCCGAAGCAATTACATTGGCATACA
1 TAGTGCATCATCAGATAAACCAAAG-AATTATATTGGCACACA
*
36105183 CAGTGCATCATCAGATAAACCAAA
1 TAGTGCATCATCAGATAAACCAAA
36105207 TTAATCATGT
Statistics
Matches: 87, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 32 0.37
42 1 0.01
43 51 0.59
44 3 0.03
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.22
Consensus pattern (42 bp):
TAGTGCATCATCAGATAAACCAAAGAATTATATTGGCACACA
Found at i:36105334 original size:42 final size:42
Alignment explanation
Indices: 36105245--36105374 Score: 136
Period size: 42 Copynumber: 3.1 Consensus size: 42
36105235 TCGATGTACA
* * * * **
36105245 GAAGTAAATATACTATCATGTAAGTGCATTATCGAACAAGCT
1 GAAGCAAATATACTAACACGTAAGTGCATCATCGAACAAATT
* * * *
36105287 AAAGCAATTATACTAATA-GATAAGTGCATCATCGAAAAAATT
1 GAAGCAAATATACTAACACG-TAAGTGCATCATCGAACAAATT
* *
36105329 GAAGCAAATATACTGACACGTAAGTGCATCATCGACCAAATT
1 GAAGCAAATATACTAACACGTAAGTGCATCATCGAACAAATT
36105371 GAAG
1 GAAG
36105375 TATAAACTTG
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
41 1 0.01
42 69 0.97
43 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.16, T:0.25
Consensus pattern (42 bp):
GAAGCAAATATACTAACACGTAAGTGCATCATCGAACAAATT
Found at i:36105467 original size:22 final size:21
Alignment explanation
Indices: 36105427--36105467 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
36105417 ATCACATAGT
36105427 TCAATTCAAATTCCATCATTC
1 TCAATTCAAATTCCATCATTC
* *
36105448 TCAATTTAACATTTCATCAT
1 TCAATTCAA-ATTCCATCAT
36105468 ATAATATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.34, C:0.24, G:0.00, T:0.41
Consensus pattern (21 bp):
TCAATTCAAATTCCATCATTC
Found at i:36105502 original size:100 final size:100
Alignment explanation
Indices: 36105390--36105582 Score: 368
Period size: 100 Copynumber: 1.9 Consensus size: 100
36105380 ACTTGTACAT
*
36105390 TTAATAGAGTAACCAGTTTCCAAATTCATCACATAGTTCAATTCAAATTCCATCATTCTCAATTT
1 TTAATAGAGTAACCAGTTTCCAAATTCATCACATAGTTCAATTCAAATCCCATCATTCTCAATTT
36105455 AACATTTCATCATATAATATAACATAATATATCAG
66 AACATTTCATCATATAATATAACATAATATATCAG
*
36105490 TTAATAGAGTAACCAGTTTCCAAATTCATCACATAGTTCAGTTCAAATCCCATCATTCTCAATTT
1 TTAATAGAGTAACCAGTTTCCAAATTCATCACATAGTTCAATTCAAATCCCATCATTCTCAATTT
36105555 AACATTTCATCATATAATATAACATAAT
66 AACATTTCATCATATAATATAACATAAT
36105583 TAAACTCAAT
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 91 1.00
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.36
Consensus pattern (100 bp):
TTAATAGAGTAACCAGTTTCCAAATTCATCACATAGTTCAATTCAAATCCCATCATTCTCAATTT
AACATTTCATCATATAATATAACATAATATATCAG
Found at i:36115351 original size:22 final size:21
Alignment explanation
Indices: 36115326--36115374 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
36115316 AAATTGTAGC
36115326 AAAATAATGAG-AAAACAACAA
1 AAAATAAT-AGCAAAACAACAA
*
36115347 GAAAATAGTAGCAAAACAACAA
1 -AAAATAATAGCAAAACAACAA
36115369 AAAATA
1 AAAATA
36115375 GCAGTTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.69, C:0.10, G:0.10, T:0.10
Consensus pattern (21 bp):
AAAATAATAGCAAAACAACAA
Found at i:36118258 original size:9 final size:9
Alignment explanation
Indices: 36118246--36118276 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
36118236 TTGATTAGCC
36118246 AAATGACCA
1 AAATGACCA
36118255 AAATGACC-
1 AAATGACCA
36118263 AAATGACCA
1 AAATGACCA
36118272 AAATG
1 AAATG
36118277 CCCTTAAGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.55, C:0.19, G:0.13, T:0.13
Consensus pattern (9 bp):
AAATGACCA
Found at i:36118266 original size:8 final size:8
Alignment explanation
Indices: 36118244--36118273 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
36118234 TGTTGATTAG
36118244 CCAAATGA
1 CCAAATGA
36118252 CCAAAATGA
1 CC-AAATGA
36118261 CCAAATGA
1 CCAAATGA
36118269 CCAAA
1 CCAAA
36118274 ATGCCCTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.53, C:0.27, G:0.10, T:0.10
Consensus pattern (8 bp):
CCAAATGA
Found at i:36118266 original size:17 final size:17
Alignment explanation
Indices: 36118244--36118276 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
36118234 TGTTGATTAG
36118244 CCAAATGACCAAAATGA
1 CCAAATGACCAAAATGA
36118261 CCAAATGACCAAAATG
1 CCAAATGACCAAAATG
36118277 CCCTTAAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.24, G:0.12, T:0.12
Consensus pattern (17 bp):
CCAAATGACCAAAATGA
Found at i:36119988 original size:21 final size:20
Alignment explanation
Indices: 36119963--36120003 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
36119953 TATCCCCACA
36119963 TGGTGTGTTGGTTGGTACTGG
1 TGGTGTGTTGGTTGG-ACTGG
36119984 TGGTGTGTTGGTTGGACTGG
1 TGGTGTGTTGGTTGGACTGG
36120004 GCTGGGAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.05, C:0.05, G:0.49, T:0.41
Consensus pattern (20 bp):
TGGTGTGTTGGTTGGACTGG
Done.