Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 111 of 284
Found at i:36421704 original size:54 final size:54
Alignment explanation
Indices: 36421454--36421863 Score: 263
Period size: 54 Copynumber: 7.6 Consensus size: 54
36421444 TCATCCTACA
* * * * * * * * *
36421454 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTGTAAATCG
* * * * *
36421508 ATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATC-
1 AGGGTATTT-TGGTAA-TTTTATAAA-TCGAGGGTATTTCGGTAATTTTGTAAATCG
* * *** *
36421563 AGGTGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CT
1 AGG-GTATTTTGGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTGTAAATCG
* * * * *
36421617 AGTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGTAAACCA
1 AG-GGTATTTTGGTAATTTTATAAATCGA-GGGTATTTCGGTAATTTTGTAAATCG
* * ***
36421672 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTGTAAATCG
*** * * * ** *
36421726 AGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAAT-GGTAATTTTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCGAGGGT-ATTTCGGTAATTTTGTAAATCG
**** * * ***
36421780 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTGTAAATCG
* * *
36421834 AGGGTACTTTGGTAATTTTACAAATTGAGG
1 AGGGTATTTTGGTAATTTTATAAATCGAGG
36421864 ACATTTTAGT
Statistics
Matches: 289, Mismatches: 55, Indels: 24
0.79 0.15 0.07
Matches are distributed among these distances:
53 5 0.02
54 222 0.77
55 27 0.09
56 35 0.12
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTATAAATCGAGGGTATTTCGGTAATTTTGTAAATCG
Found at i:36421847 original size:81 final size:81
Alignment explanation
Indices: 36421655--36421863 Score: 292
Period size: 81 Copynumber: 2.6 Consensus size: 81
36421645 GGGGTATTTT
* * * * * *
36421655 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGT
1 GGTAATTTTGTAAATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGT
*
36421720 AAATCGAGGGTAAAAT
66 AAATCGAGGGTAAAAC
* * **
36421736 GGTAATTCTGTAAATTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGT
1 GGTAATTTTGTAAATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGT
36421801 AAATCGAGGGTAAAAC
66 AAATCGAGGGTAAAAC
* * *
36421817 GGTAATTTTGTAAATCGAGGGTACTTTGGTAATTTTACAAATTGAGG
1 GGTAATTTTGTAAATCGAGGGTAATTTGGTAATTTTATAAATCGAGG
36421864 ACATTTTAGT
Statistics
Matches: 110, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 110 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.33
Consensus pattern (81 bp):
GGTAATTTTGTAAATCGAGGGTAATTTGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGT
AAATCGAGGGTAAAAC
Found at i:36421863 original size:27 final size:27
Alignment explanation
Indices: 36421548--36421852 Score: 231
Period size: 27 Copynumber: 11.3 Consensus size: 27
36421538 GGGTATTTCT
*
36421548 GTAATTTTGTAAATC-AGGTGTATTTTG
1 GTAATTTTGTAAATCGAGG-GTAATTTG
** *
36421575 GTAATTTTACAAATTGAGGGT-ATTTCG
1 GTAATTTTGTAAATCGAGGGTAATTT-G
*** * *
36421602 GTAATTTCACAAA-CTAGTGGTATTTTG
1 GTAATTTTGTAAATCGAG-GGTAATTTG
** * *
36421629 GTAATTTTACAAA-CTAGGGGTATTTTG
1 GTAATTTTGTAAATCGA-GGGTAATTTG
* * * *
36421656 GTAATTTTGTAAACCAAGGGTATTTTA
1 GTAATTTTGTAAATCGAGGGTAATTTG
***
36421683 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAATTTG
**
36421710 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAATTTG
* * **
36421737 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAATTTG
* ***
36421764 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAATTTG
* ***
36421791 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAATTTG
*
36421818 GTAATTTTGTAAATCGAGGGTACTTTG
1 GTAATTTTGTAAATCGAGGGTAATTTG
36421845 GTAATTTT
1 GTAATTTT
36421853 ACAAATTGAG
Statistics
Matches: 238, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.02
27 224 0.94
28 9 0.04
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAATTTG
Found at i:36423692 original size:20 final size:20
Alignment explanation
Indices: 36423667--36423808 Score: 65
Period size: 20 Copynumber: 7.1 Consensus size: 20
36423657 GAAGTACAAA
*
36423667 CAGGGGCACGTATGTGTAAT
1 CAGGGGCACGTATGTGCAAT
* * * *
36423687 CAGGGGTATCATA-GTACAAA
1 CAGGGGCA-CGTATGTGCAAT
* *
36423707 CAGAGGCACGTATATGCAAT
1 CAGGGGCACGTATGTGCAAT
* * ** *
36423727 CAGGGGTACCG-AAGTATAAA
1 CAGGGGCA-CGTATGTGCAAT
36423747 CAGGGGCACGTATGTGCAAT
1 CAGGGGCACGTATGTGCAAT
* * * * *
36423767 TAGGGGTACCG-AAGTACAAA
1 CAGGGGCA-CGTATGTGCAAT
* *
36423787 CAGGGGCAGGTATGTGCGAT
1 CAGGGGCACGTATGTGCAAT
36423807 CA
1 CA
36423809 TACAATAATT
Statistics
Matches: 81, Mismatches: 35, Indels: 12
0.63 0.27 0.09
Matches are distributed among these distances:
19 6 0.07
20 68 0.84
21 7 0.09
ACGTcount: A:0.32, C:0.17, G:0.32, T:0.19
Consensus pattern (20 bp):
CAGGGGCACGTATGTGCAAT
Found at i:36423715 original size:40 final size:40
Alignment explanation
Indices: 36423625--36423808 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
36423615 ACTAAGGTAT
* * * * **
36423625 AAACAGGGGCACGAAAGTGCATTCA-GAGTATTGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
* *
36423664 AAACAGGGGCACGTATGTGTAATCAGGGGTATC-ATAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGA-AGTAC
* * *
36423704 AAACAGAGGCACGTATATGCAATCAGGGGTACCGAAGTAT
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
*
36423744 AAACAGGGGCACGTATGTGCAATTAGGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
* *
36423784 AAACAGGGGCAGGTATGTGCGATCA
1 AAACAGGGGCACGTATGTGCAATCA
36423809 TACAATAATT
Statistics
Matches: 124, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
39 22 0.18
40 101 0.81
41 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.18
Consensus pattern (40 bp):
AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
Found at i:36442120 original size:40 final size:40
Alignment explanation
Indices: 36442076--36442238 Score: 177
Period size: 40 Copynumber: 4.1 Consensus size: 40
36442066 ACCAGGGTAT
* *
36442076 AAACAGGGGCACGTATGTGCAATCAGGGATACTGAAGTAC
1 AAACAGAGGCACGTATGTGCAATCAGGGGTACTGAAGTAC
* * *
36442116 AAACAGGGGCACATATGTGCAATGAGGGGTA-TCGAAGTAC
1 AAACAGAGGCACGTATGTGCAATCAGGGGTACT-GAAGTAC
* **
36442156 AAACAAAGGCACGTACATGCAATCAGGGGTACTGAAGTAC
1 AAACAGAGGCACGTATGTGCAATCAGGGGTACTGAAGTAC
* * * * *
36442196 AAAC-GAAGGTACGTATGTTCTATCAAGGGTACCGAAGTAC
1 AAACAG-AGGCACGTATGTGCAATCAGGGGTACTGAAGTAC
36442236 AAA
1 AAA
36442239 GAAAAGTACA
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.18
Consensus pattern (40 bp):
AAACAGAGGCACGTATGTGCAATCAGGGGTACTGAAGTAC
Found at i:36442213 original size:80 final size:80
Alignment explanation
Indices: 36442083--36442238 Score: 197
Period size: 80 Copynumber: 1.9 Consensus size: 80
36442073 TATAAACAGG
** * * * *
36442083 GGCACGTATGTGCAATCAGGGATACTGAAGTACAAACAGGGGCACATATGTGCAATGAGGGGTAT
1 GGCACGTACATGCAATCAGGGATACTGAAGTACAAACAGAGGCACATATGTGCAATCAAGGGTAC
36442148 CGAAGTACAAACAAA
66 CGAAGTACAAACAAA
* * * * *
36442163 GGCACGTACATGCAATCAGGGGTACTGAAGTACAAAC-GAAGGTACGTATGTTCTATCAAGGGTA
1 GGCACGTACATGCAATCAGGGATACTGAAGTACAAACAG-AGGCACATATGTGCAATCAAGGGTA
36442227 CCGAAGTACAAA
65 CCGAAGTACAAA
36442239 GAAAAGTACA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 63 0.98
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.19
Consensus pattern (80 bp):
GGCACGTACATGCAATCAGGGATACTGAAGTACAAACAGAGGCACATATGTGCAATCAAGGGTAC
CGAAGTACAAACAAA
Found at i:36446169 original size:27 final size:27
Alignment explanation
Indices: 36446135--36446312 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
36446125 TAAACTGTAC
36446135 AGCACTAAGTGTGCGATATGACTATAT
1 AGCACTAAGTGTGCGATATGACTATAT
* * *
36446162 TGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATATGACTAT-AT
* **
36446190 -GCACTAAGTGTGCGAAATGA-TCATGC
1 AGCACTAAGTGTGCGATATGACT-ATAT
* * *
36446216 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TATGACTATAT
* * * **
36446244 AGCACTAAGTGTGTGATTTGATTACGT
1 AGCACTAAGTGTGCGATATGACTATAT
* *
36446271 GGCACTAAGTGTGCGAGT-TGATTATAT
1 AGCACTAAGTGTGCGA-TATGACTATAT
*
36446298 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36446313 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 23 0.18
29 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATATGACTATAT
Found at i:36446276 original size:82 final size:81
Alignment explanation
Indices: 36446136--36446286 Score: 205
Period size: 82 Copynumber: 1.9 Consensus size: 81
36446126 AAACTGTACA
* *
36446136 GCACTAAGTGTGCGATATGACTATATTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATATGACTATATAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
36446201 GCGAAATGATCATGCG
66 GCGAAATGATCATGCG
* * * ** *
36446217 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGTGATTTGATTACG-TGGCACTAAGT
1 GCACTAAGTGTGCGA-TATGACTATATAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
36446281 GTGCGA
64 GTGCGA
36446287 GTTGATTATA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
81 16 0.27
82 44 0.73
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATATGACTATATAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAAATGATCATGCG
Found at i:36446303 original size:82 final size:81
Alignment explanation
Indices: 36446132--36446312 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
36446122 GATTAAACTG
* *
36446132 TACAGCACTAAGTGTGCGATATGACTATATTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATATGACTATATAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36446197 GTGTGCGAAATGATCA
66 GTGTGCGAAATGATCA
* * * * * ** *
36446213 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGTGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TATGACTATATAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
** *
36446277 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAAATGATCA
* *
36446295 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36446313 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATATGACTATATAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAAATGATCA
Found at i:36453287 original size:18 final size:17
Alignment explanation
Indices: 36453266--36453299 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
36453256 TTCTGGGTTA
36453266 AATGGGCCGTATGGGCCT
1 AATGGGCC-TATGGGCCT
36453284 AATGGGCCTATGGGCC
1 AATGGGCCTATGGGCC
36453300 CGCGTGGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.18, C:0.24, G:0.38, T:0.21
Consensus pattern (17 bp):
AATGGGCCTATGGGCCT
Found at i:36453711 original size:27 final size:27
Alignment explanation
Indices: 36453636--36453713 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
36453626 TAAGACCCTA
** *
36453636 ATTTGTAAAATTACCGAAATAATCTCG
1 ATTTGTAAAATTACCGAAATACCCCCG
36453663 ATTTGTAAAATTACCGAAATACCCCC-
1 ATTTGTAAAATTACCGAAATACCCCCG
*
36453689 AGTTTGTAAAATTATCGAAATACCC
1 A-TTTGTAAAATTACCGAAATACCC
36453714 TTATAGTATA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.02
27 45 0.98
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
ATTTGTAAAATTACCGAAATACCCCCG
Found at i:36453752 original size:27 final size:27
Alignment explanation
Indices: 36453666--36453754 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
36453656 AATCTCGATT
* *
36453666 TGTAAAATTACCGAAATACCCCCAGT-T
1 TGTAAAATTACCGAAATA-CCCCTGTAG
* * *
36453693 TGTAAAATTATCGAAATACCCTTATAG
1 TGTAAAATTACCGAAATACCCCTGTAG
* *
36453720 TATAAAATTACCAAAATACCCCTGTAG
1 TGTAAAATTACCGAAATACCCCTGTAG
*
36453747 GGTAAAAT
1 TGTAAAAT
36453755 GACTGTTTTG
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
26 4 0.08
27 45 0.92
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCCTGTAG
Found at i:36459927 original size:10 final size:10
Alignment explanation
Indices: 36459889--36459921 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
36459879 GAAATTTTGA
36459889 TGGAGGAGTTG
1 TGGA-GAGTTG
36459900 TGGAGAGTTG
1 TGGAGAGTTG
36459910 TGGAGAGTTG
1 TGGAGAGTTG
36459920 TG
1 TG
36459922 AGGAGTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 18 0.82
11 4 0.18
ACGTcount: A:0.18, C:0.00, G:0.52, T:0.30
Consensus pattern (10 bp):
TGGAGAGTTG
Found at i:36460076 original size:50 final size:50
Alignment explanation
Indices: 36459983--36460084 Score: 170
Period size: 50 Copynumber: 2.0 Consensus size: 50
36459973 ATTTCAAAGT
* *
36459983 AGGGAGAGTTGTAGCTGATTGGGGGATTGGAGTATGCAAATTCGGCTATG
1 AGGGAAAGTTGTAGCCGATTGGGGGATTGGAGTATGCAAATTCGGCTATG
36460033 ANGGGAAAGTTGTAGCCGATTGGGGG-TTGGAGTATGCAAATTCGGCTATG
1 A-GGGAAAGTTGTAGCCGATTGGGGGATTGGAGTATGCAAATTCGGCTATG
36460083 AG
1 AG
36460085 ATGTTTCTCC
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
49 1 0.02
50 26 0.53
51 22 0.45
ACGTcount: A:0.25, C:0.09, G:0.39, T:0.26
Consensus pattern (50 bp):
AGGGAAAGTTGTAGCCGATTGGGGGATTGGAGTATGCAAATTCGGCTATG
Found at i:36462041 original size:28 final size:28
Alignment explanation
Indices: 36461991--36462055 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
36461981 GCATCTGATA
* * *
36461991 CTGATTCTG-TATTGGGCTTAAGCCTAC
1 CTGATTCTGTTAATGGGCTAAAGCCCAC
36462018 CTGATTCTGTTAATGGGCTAAAGCCCAC
1 CTGATTCTGTTAATGGGCTAAAGCCCAC
*
36462046 CTGATACTGT
1 CTGATTCTGT
36462056 GTCTGTGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
27 9 0.27
28 24 0.73
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (28 bp):
CTGATTCTGTTAATGGGCTAAAGCCCAC
Found at i:36463531 original size:19 final size:19
Alignment explanation
Indices: 36463507--36463547 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
36463497 GGGAAAGTAT
36463507 ACGGGCACCAGCTATGTGG
1 ACGGGCACCAGCTATGTGG
36463526 ACGGGCACCAGCTATGTGG
1 ACGGGCACCAGCTATGTGG
36463545 ACG
1 ACG
36463548 ATTGTAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.22, C:0.27, G:0.37, T:0.15
Consensus pattern (19 bp):
ACGGGCACCAGCTATGTGG
Found at i:36468368 original size:27 final size:27
Alignment explanation
Indices: 36468337--36468437 Score: 107
Period size: 27 Copynumber: 3.7 Consensus size: 27
36468327 CCCCAATTTG
36468337 TAAAATTATCAAAATACCCCTGGTTTA
1 TAAAATTATCAAAATACCCCTGGTTTA
*
36468364 TAAAATTATCGAAATACCACC-GGTTTA
1 TAAAATTATCAAAATACC-CCTGGTTTA
* * * *
36468391 TAAAATTA-CTGAAATACCCCTTGTAGTG
1 TAAAATTATC-AAAATACCCCTGGT-TTA
*
36468419 TAAAATTACCAAAATACCC
1 TAAAATTATCAAAATACCC
36468438 TTGTAGGGTA
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
26 3 0.05
27 41 0.64
28 19 0.30
29 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TAAAATTATCAAAATACCCCTGGTTTA
Found at i:36468448 original size:27 final size:28
Alignment explanation
Indices: 36468391--36468451 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 28
36468381 CACCGGTTTA
** *
36468391 TAAAATTACTGAAATACCCCTTGTAGTG
1 TAAAATTACCAAAATACCCCTTGTAGGG
36468419 TAAAATTACCAAAATA-CCCTTGTAGGG
1 TAAAATTACCAAAATACCCCTTGTAGGG
36468446 TAAAAT
1 TAAAAT
36468452 AATTGTTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 16 0.53
28 14 0.47
ACGTcount: A:0.41, C:0.16, G:0.13, T:0.30
Consensus pattern (28 bp):
TAAAATTACCAAAATACCCCTTGTAGGG
Found at i:36468526 original size:14 final size:14
Alignment explanation
Indices: 36468507--36468542 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
36468497 TTGATAGATT
36468507 TGACTGTGATTGTA
1 TGACTGTGATTGTA
*
36468521 TGACTGTGGTTGTA
1 TGACTGTGATTGTA
36468535 TGACTGTG
1 TGACTGTG
36468543 TTTTAACTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.17, C:0.08, G:0.33, T:0.42
Consensus pattern (14 bp):
TGACTGTGATTGTA
Found at i:36469271 original size:32 final size:32
Alignment explanation
Indices: 36469235--36469303 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
36469225 GTCTATGAGA
*
36469235 TCTGTCA-CTGTATTGGGCTTAGGCCCACTTG-T
1 TCTGTCATCTGT-TTGGGC-TAGGCCCAATTGAT
* *
36469267 TCTGTTATTTGTTTGGGCTAGGCCCAATTGAT
1 TCTGTCATCTGTTTGGGCTAGGCCCAATTGAT
36469299 TCTGT
1 TCTGT
36469304 TTGTAACACC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 11 0.34
32 18 0.56
33 3 0.09
ACGTcount: A:0.13, C:0.20, G:0.25, T:0.42
Consensus pattern (32 bp):
TCTGTCATCTGTTTGGGCTAGGCCCAATTGAT
Found at i:36472207 original size:30 final size:30
Alignment explanation
Indices: 36472173--36472233 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
36472163 TTCCCGAGCC
36472173 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
36472203 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
36472233 T
1 T
36472234 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:36483421 original size:46 final size:46
Alignment explanation
Indices: 36483327--36483421 Score: 163
Period size: 46 Copynumber: 2.1 Consensus size: 46
36483317 CTAAATAATT
* *
36483327 CATTTCAAAATTTCAATAATCACAACATAATCCATCATTAAGCATG
1 CATTTCAAAATTTCAATAATCACAACATAATCCACCATTAAACATG
*
36483373 CATTTCAAAATTTCAATAATCACAACATAATCCACCATTAAACTTG
1 CATTTCAAAATTTCAATAATCACAACATAATCCACCATTAAACATG
36483419 CAT
1 CAT
36483422 ATCGTCCCTT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.43, C:0.23, G:0.03, T:0.31
Consensus pattern (46 bp):
CATTTCAAAATTTCAATAATCACAACATAATCCACCATTAAACATG
Found at i:36483570 original size:30 final size:29
Alignment explanation
Indices: 36483536--36483602 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 29
36483526 GCTACAGGGG
*
36483536 TCACACGTCCATGTGGCCAGGCCTTGTGAC
1 TCACACGT-CATGTGGCCAGGCCTTGTGAA
36483566 TCACACAGTCATGTGGCCAGGCCTTGTGAA
1 TCACAC-GTCATGTGGCCAGGCCTTGTGAA
36483596 TCACACG
1 TCACACG
36483603 GATATGACAC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
29 1 0.03
30 32 0.91
31 2 0.06
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.22
Consensus pattern (29 bp):
TCACACGTCATGTGGCCAGGCCTTGTGAA
Found at i:36483950 original size:10 final size:11
Alignment explanation
Indices: 36483915--36483953 Score: 55
Period size: 10 Copynumber: 3.7 Consensus size: 11
36483905 TTTAACCTAT
*
36483915 TCAAAACATGA
1 TCAAAACATGC
36483926 TC-AAACATGC
1 TCAAAACATGC
36483936 TCAAAACATGC
1 TCAAAACATGC
36483947 -CAAAACA
1 TCAAAACA
36483954 ATCATCCTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.51, C:0.26, G:0.08, T:0.15
Consensus pattern (11 bp):
TCAAAACATGC
Found at i:36489113 original size:40 final size:40
Alignment explanation
Indices: 36489059--36489363 Score: 493
Period size: 40 Copynumber: 7.6 Consensus size: 40
36489049 CATTTGAATG
36489059 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
36489099 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
36489139 ATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
36489179 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
36489219 ATATCCGGGATAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
36489259 ATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
36489299 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
36489339 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
36489364 ATTGAGCTTG
Statistics
Matches: 244, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 244 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:36489386 original size:120 final size:120
Alignment explanation
Indices: 36489059--36489363 Score: 565
Period size: 120 Copynumber: 2.5 Consensus size: 120
36489049 CATTTGAATG
36489059 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCA
36489124 TTTGTGCGAACTGATATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGAT
66 TTTGTGCGAACTGATATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGAT
36489179 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCA
36489244 TTTGTGCGAACTGATATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGAT
66 TTTGTGCGAACTGATATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGAT
* * * * *
36489299 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCA
36489364 ATTGAGCTTG
Statistics
Matches: 180, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 180 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGATAAGACCCGAAGGCA
TTTGTGCGAACTGATATATCCGGGCTAAGACCCGATGGCGTTTGTGCGAATTGAT
Found at i:36496723 original size:239 final size:239
Alignment explanation
Indices: 36496304--36496752 Score: 792
Period size: 239 Copynumber: 1.9 Consensus size: 239
36496294 GCTAAATATG
* *
36496304 AAGCTTGTTAATGATGCATGTGATGATGGATTGATGATTCTTGAATCTTCTTTTTAGCATTTTTG
1 AAGCTTGTTAATGATGCATGTGATGATGGATTGATGATTCTTGAACCTCCTTTTTAGCATTTTTG
* *
36496369 AGTGAGCACATATGTGCATTGGTTGCTAGATGGAGAAGAATCGGCTAGCAAGTTGTGTGCTAAGG
66 AGTGAGCACATATGTGCATTGGTTGCTAAATGGAGAAGAACCGGCTAGCAAGTTGTGTGCTAAGG
* * *
36496434 CCGAATATAATTTTTGTATATTAATGAGTAATGCATGGGTTAAATTGATGGAAAGGGAGAGGATG
131 CCGAATATAACTTTTGCATATTAATGAGCAATGCATGGGTTAAATTGATGGAAAGGGAGAGGATG
36496499 CTTTACTAGTGTATAAGCTATTTAGGTGAGACTATAGAATACTC
196 CTTTACTAGTGTATAAGCTATTTAGGTGAGACTATAGAATACTC
*
36496543 AAGCTTGTTAATGATGCATGTGATGGT-GACTTGATGATTCTTGAACCTCCTTTTTAGCATTTTT
1 AAGCTTGTTAATGATGCATGTGATGATGGA-TTGATGATTCTTGAACCTCCTTTTTAGCATTTTT
36496607 GAGTGAGCACATATGTGCATTGGTTGCTAAATGGAGAAGAACCGGCTAGCAAGTTGTGTGCTAAG
65 GAGTGAGCACATATGTGCATTGGTTGCTAAATGGAGAAGAACCGGCTAGCAAGTTGTGTGCTAAG
* *
36496672 GCCGAATATAACTTTTGCATGTTAATGAGCAATGCATGTGTTAAATTGATGGAAAGGGAGAGGAT
130 GCCGAATATAACTTTTGCATATTAATGAGCAATGCATGGGTTAAATTGATGGAAAGGGAGAGGAT
36496737 GCTTTACTAGTGTATA
195 GCTTTACTAGTGTATA
36496753 TATGTGTGTA
Statistics
Matches: 199, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
238 2 0.01
239 197 0.99
ACGTcount: A:0.29, C:0.11, G:0.26, T:0.34
Consensus pattern (239 bp):
AAGCTTGTTAATGATGCATGTGATGATGGATTGATGATTCTTGAACCTCCTTTTTAGCATTTTTG
AGTGAGCACATATGTGCATTGGTTGCTAAATGGAGAAGAACCGGCTAGCAAGTTGTGTGCTAAGG
CCGAATATAACTTTTGCATATTAATGAGCAATGCATGGGTTAAATTGATGGAAAGGGAGAGGATG
CTTTACTAGTGTATAAGCTATTTAGGTGAGACTATAGAATACTC
Found at i:36497404 original size:39 final size:40
Alignment explanation
Indices: 36497307--36497529 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
36497297 TTGAATGATG
*
36497307 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
36497345 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
36497386 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
36497425 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
36497464 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
36497503 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
36497530 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 91 0.56
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:36497451 original size:78 final size:80
Alignment explanation
Indices: 36497307--36497529 Score: 262
Period size: 79 Copynumber: 2.8 Consensus size: 80
36497297 TTGAATGATG
* * * * *
36497307 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
36497369 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
36497386 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
36497447 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* *
36497464 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
36497529 G
66 G
36497530 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
78 45 0.36
79 56 0.45
80 22 0.18
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:36497551 original size:79 final size:79
Alignment explanation
Indices: 36497359--36497562 Score: 195
Period size: 79 Copynumber: 2.6 Consensus size: 79
36497349 GGACTAAGAT
** * * * *
36497359 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCT-AAGCCTGAAGGCATTTGTGCGAGATACT
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACT
*
36497422 AATTCCGGGCTAAGC
65 AATACCGGGCTAAGC
** * *
36497437 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGA-TACT
*
36497501 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* *
36497517 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
36497563 TACGTGATTT
Statistics
Matches: 107, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
77 1 0.01
78 34 0.32
79 47 0.44
80 25 0.23
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:36500261 original size:20 final size:19
Alignment explanation
Indices: 36500216--36500265 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
36500206 TTTTATAATT
36500216 TTGAATGCAAATGATGCAA
1 TTGAATGCAAATGATGCAA
36500235 -TGAAATGCTATAA-GATGCAA
1 TTG-AATGC-A-AATGATGCAA
36500255 TTGAATGCAAA
1 TTGAATGCAAA
36500266 AGGTATCGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
18 4 0.15
19 6 0.22
20 13 0.48
21 4 0.15
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.26
Consensus pattern (19 bp):
TTGAATGCAAATGATGCAA
Found at i:36503281 original size:22 final size:21
Alignment explanation
Indices: 36503251--36503316 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
36503241 TACAAATTAA
36503251 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
36503273 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
36503294 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
36503313 ATCT
1 ATCT
36503317 AAGATTGGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:36503303 original size:19 final size:19
Alignment explanation
Indices: 36503268--36503329 Score: 97
Period size: 19 Copynumber: 3.2 Consensus size: 19
36503258 AGATTACAAG
36503268 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
36503289 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
36503308 ATCATATCTAAGATTGGAT
1 ATCATATCTAAGATTGCAT
36503327 ATC
1 ATC
36503330 CTTAAAGATT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 31 0.77
20 1 0.03
21 8 0.20
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:36504821 original size:34 final size:34
Alignment explanation
Indices: 36504770--36504872 Score: 95
Period size: 34 Copynumber: 3.1 Consensus size: 34
36504760 GCAGTACAAA
* * * *
36504770 CAGTTTGGGCCTAAGCCC-TTAACAATAGCATTAT
1 CAGTGTGGGCCTTAGCCCATT-ACAATAACAGTAT
*
36504804 CAGTGTGGGCCTTAGCCCATTACAGTAACAGTAT
1 CAGTGTGGGCCTTAGCCCATTACAATAACAGTAT
* * *
36504838 CAGTGTGGGTCGTAGCCCAATT-CAGT-ACAGTAT
1 CAGTGTGGGCCTTAGCCC-ATTACAATAACAGTAT
36504871 CA
1 CA
36504873 AAGATGCAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
33 9 0.15
34 46 0.77
35 5 0.08
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (34 bp):
CAGTGTGGGCCTTAGCCCATTACAATAACAGTAT
Found at i:36508076 original size:15 final size:15
Alignment explanation
Indices: 36508056--36508093 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
36508046 TACAATTTTA
*
36508056 TTTTTAATTTTTGTT
1 TTTTTAATTTTTATT
36508071 TTTTT-ATTTTTATT
1 TTTTTAATTTTTATT
*
36508085 TATTTAATT
1 TTTTTAATT
36508094 CCCTTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTTAATTTTTATT
Found at i:36517177 original size:20 final size:20
Alignment explanation
Indices: 36517148--36517191 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
36517138 GCTGGAGTAG
36517148 AACACGATTTTCATTTCCAA
1 AACACGATTTTCATTTCCAA
*
36517168 AACACTATTTTCATTTCCAA
1 AACACGATTTTCATTTCCAA
36517188 AACA
1 AACA
36517192 ATAACTGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.39, C:0.25, G:0.02, T:0.34
Consensus pattern (20 bp):
AACACGATTTTCATTTCCAA
Found at i:36522578 original size:43 final size:43
Alignment explanation
Indices: 36522503--36522626 Score: 169
Period size: 43 Copynumber: 2.9 Consensus size: 43
36522493 TCTGAACTCA
* * **
36522503 TTCACCGGCATT-TCGCGTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* *
36522545 TTCACCGGCATTATAGCCTGCTAGGCCCAAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* *
36522588 CTCACTGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
36522627 ATATTATTCA
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 12 0.17
43 60 0.83
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.25
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:36525156 original size:36 final size:36
Alignment explanation
Indices: 36525109--36525181 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
36525099 TATAGCGTCT
36525109 AGGCCGAGTTTAGGGGGTTACAAGTTTTCCATGAAA
1 AGGCCGAGTTTAGGGGGTTACAAGTTTTCCATGAAA
*
36525145 AGGCCGAGTTTAGGGTGTTACAAGTTTTCCATGAAA
1 AGGCCGAGTTTAGGGGGTTACAAGTTTTCCATGAAA
36525181 A
1 A
36525182 AGATATGTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (36 bp):
AGGCCGAGTTTAGGGGGTTACAAGTTTTCCATGAAA
Found at i:36525291 original size:41 final size:41
Alignment explanation
Indices: 36525244--36525321 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
36525234 TATGAAAAGT
36525244 AAGGGGTATCACATCTTTTTCTGAATTTATTCTGAATCTGA
1 AAGGGGTATCACATCTTTTTCTGAATTTATTCTGAATCTGA
36525285 AAGGGGTATCACATCTTTTTCTGAATTTATTCTGAAT
1 AAGGGGTATCACATCTTTTTCTGAATTTATTCTGAAT
36525322 TTGAGTCAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (41 bp):
AAGGGGTATCACATCTTTTTCTGAATTTATTCTGAATCTGA
Found at i:36528092 original size:41 final size:40
Alignment explanation
Indices: 36527995--36528151 Score: 122
Period size: 43 Copynumber: 3.8 Consensus size: 40
36527985 AGCTTGTACA
* * * *
36527995 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCATATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG--ATTATATA-CG
* * *
36528037 ATGCCACTATCCCAGACAGGGTCTTACACGAGTTATATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGA-TTATATACG
* * *
36528078 ATGCCAATGTCCCAGACATGGTTTTGCAC-ATTTTATCACTTTG
1 ATGCCAATGTCCCAGACATGGTCTTACACGATTATAT-AC---G
36528121 ATGCCAATGAT-CCAGACATGGTCTTACACGA
1 ATGCCAATG-TCCCAGACATGGTCTTACACGA
36528152 ATTCACACAT
Statistics
Matches: 94, Mismatches: 13, Indels: 14
0.78 0.11 0.12
Matches are distributed among these distances:
39 5 0.05
40 3 0.03
41 27 0.29
42 11 0.12
43 46 0.49
44 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (40 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGATTATATACG
Found at i:36528916 original size:10 final size:10
Alignment explanation
Indices: 36528901--36528926 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
36528891 CAAAAACATA
36528901 AAAATCGAAC
1 AAAATCGAAC
36528911 AAAATCGAAC
1 AAAATCGAAC
36528921 AAAATC
1 AAAATC
36528927 CATACCTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.19, G:0.08, T:0.12
Consensus pattern (10 bp):
AAAATCGAAC
Found at i:36536517 original size:22 final size:22
Alignment explanation
Indices: 36536490--36536532 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
36536480 CTGCGATATT
36536490 TACGGCGTTGAGCCGTCCTGTC
1 TACGGCGTTGAGCCGTCCTGTC
36536512 TACGGCGTTGAGCCGTCCTGT
1 TACGGCGTTGAGCCGTCCTGT
36536533 TGACTTAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.09, C:0.30, G:0.33, T:0.28
Consensus pattern (22 bp):
TACGGCGTTGAGCCGTCCTGTC
Found at i:36538270 original size:6 final size:6
Alignment explanation
Indices: 36538199--36538269 Score: 90
Period size: 6 Copynumber: 11.7 Consensus size: 6
36538189 CAAAAGAATT
* * *
36538199 TTTTCA TTTTCA TTTTCA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
36538247 TTTTGCAA TTTTAA TTTT-A TTTT
1 TTTT--AA TTTTAA TTTTAA TTTT
36538270 TTTGTTCCAT
Statistics
Matches: 62, Mismatches: 1, Indels: 5
0.91 0.01 0.07
Matches are distributed among these distances:
5 5 0.08
6 51 0.82
8 6 0.10
ACGTcount: A:0.25, C:0.06, G:0.01, T:0.68
Consensus pattern (6 bp):
TTTTAA
Found at i:36550571 original size:20 final size:20
Alignment explanation
Indices: 36550546--36550583 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36550536 GACTAAACCG
36550546 AGAACTTTAG-AAATTTTTAC
1 AGAAC-TTAGAAAATTTTTAC
36550566 AGAACTTAGAAAATTTTT
1 AGAACTTAGAAAATTTTT
36550584 CCACTAAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (20 bp):
AGAACTTAGAAAATTTTTAC
Found at i:36561112 original size:42 final size:43
Alignment explanation
Indices: 36561014--36561167 Score: 125
Period size: 43 Copynumber: 3.6 Consensus size: 43
36561004 GTAAACTACA
* * * *
36561014 ATGCCGACGTCCCGAACATGGTCTTACATGTAATTCAATATCG
1 ATGCCGATGTCCCAAACATGGTCTTATATGTAAATCAATATCG
** * *
36561057 ATGCCTCTATCCCAAACAAGGTCTTATATG-AAATCAGATA-CG
1 ATGCCGATGTCCCAAACATGGTCTTATATGTAAATCA-ATATCG
* ** *
36561099 ATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCA-ATCG
1 ATGCCGATGTCCCAAACATGGTCTTATATGTAAATC-AATATCG
* * * *
36561142 AGGCCGATGTCTCAGACACGGTCTTA
1 ATGCCGATGTCCCAAACATGGTCTTA
36561168 CACGATATCT
Statistics
Matches: 88, Mismatches: 19, Indels: 8
0.77 0.17 0.07
Matches are distributed among these distances:
42 31 0.35
43 57 0.65
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCGATGTCCCAAACATGGTCTTATATGTAAATCAATATCG
Found at i:36566584 original size:27 final size:26
Alignment explanation
Indices: 36566510--36566623 Score: 131
Period size: 27 Copynumber: 4.2 Consensus size: 26
36566500 GGAGGAAGCT
*
36566510 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTCTGCCAC-AATATCTG
* *
36566537 TTTCTGGTGGCTAC-GCTACAAATATTTG
1 -TTCTGGTGGCT-CTGCCAC-AATATCTG
36566565 TTCTGGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTCTGCCACAATATCTG
* *
36566591 TATCTGGTGACTCTGTCACAATATCTG
1 T-TCTGGTGGCTCTGCCACAATATCTG
36566618 TTCTGG
1 TTCTGG
36566624 CAGCCATGTT
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
26 14 0.18
27 39 0.51
28 23 0.30
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTG
Found at i:36571266 original size:47 final size:47
Alignment explanation
Indices: 36571242--36572157 Score: 1706
Period size: 47 Copynumber: 19.5 Consensus size: 47
36571232 TATATATTTT
* *
36571242 ATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571289 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
* * * *
36571336 ATAAGGCCGAATGGCCAATGTGGTGAATATGAACACGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571383 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571430 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571477 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571524 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571571 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571618 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571665 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571712 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571759 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571806 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571853 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571900 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571947 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36571994 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
36572041 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
* * * * *
36572088 ATAAGGCCGAATGGCCAATGTGGTGAATATGAACACGCATATATGTG
1 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
* * *
36572135 GTAAAGCCGAATGGCTAATGTGA
1 ATAAGGCCGAATGGCCAATGTGA
36572158 AATATGTATG
Statistics
Matches: 850, Mismatches: 19, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 850 1.00
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.25
Consensus pattern (47 bp):
ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTG
Found at i:36572190 original size:48 final size:48
Alignment explanation
Indices: 36572127--36572703 Score: 840
Period size: 48 Copynumber: 11.8 Consensus size: 48
36572117 TGAACACGCA
36572127 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
36572175 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
36572223 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
36572273 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
36572321 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
36572371 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
36572419 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
36572469 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
36572517 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
36572567 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
36572615 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
36572665 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
36572704 GGCGATGTGC
Statistics
Matches: 478, Mismatches: 31, Indels: 40
0.87 0.06 0.07
Matches are distributed among these distances:
47 5 0.01
48 244 0.51
49 20 0.04
50 204 0.43
51 5 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:36572258 original size:141 final size:139
Alignment explanation
Indices: 36571242--36572552 Score: 1339
Period size: 141 Copynumber: 9.2 Consensus size: 139
36571232 TATATATTTT
* * *
36571242 ATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAA
1 ATAAGGCCGAATGGCCAATGTGA--AATATGAGCATGCATATATGTGATAAAGCCGAATGGCCAA
* * * * * * *
36571307 TGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACAC
64 TGTGATAAATGTGAGCATGCATATGTGTGATAAAGCCGAATGGCCAATGTGATAAATGTGAGCAT
36571372 GCATATGTGTG
129 GCATATGTGTG
* * *
36571383 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAA
1 ATAAGGCCGAATGGCCAATGTGA--AATATGAGCATGCATATATGTGATAAAGCCGAATGGCCAA
* * *
36571448 TGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCAT
64 TGTGATAAATGTGAGCATGCATATGTGTGATAAAGCCGAATGGCCAATGTGATAAATGTGAGCAT
36571513 GCATATGTGTG
129 GCATATGTGTG
* * *
36571524 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAA
1 ATAAGGCCGAATGGCCAATGTGA--AATATGAGCATGCATATATGTGATAAAGCCGAATGGCCAA
* * *
36571589 TGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCAT
64 TGTGATAAATGTGAGCATGCATATGTGTGATAAAGCCGAATGGCCAATGTGATAAATGTGAGCAT
36571654 GCATATGTGTG
129 GCATATGTGTG
* * *
36571665 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAA
1 ATAAGGCCGAATGGCCAATGTGA--AATATGAGCATGCATATATGTGATAAAGCCGAATGGCCAA
* * *
36571730 TGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCAT
64 TGTGATAAATGTGAGCATGCATATGTGTGATAAAGCCGAATGGCCAATGTGATAAATGTGAGCAT
36571795 GCATATGTGTG
129 GCATATGTGTG
* * *
36571806 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAA
1 ATAAGGCCGAATGGCCAATGTGA--AATATGAGCATGCATATATGTGATAAAGCCGAATGGCCAA
* * *
36571871 TGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCAT
64 TGTGATAAATGTGAGCATGCATATGTGTGATAAAGCCGAATGGCCAATGTGATAAATGTGAGCAT
36571936 GCATATGTGTG
129 GCATATGTGTG
* * *
36571947 ATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAA
1 ATAAGGCCGAATGGCCAATGTGA--AATATGAGCATGCATATATGTGATAAAGCCGAATGGCCAA
* * *
36572012 TGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCAT
64 TGTGATAAATGTGAGCATGCATATGTGTGATAAAGCCGAATGGCCAATGTGATAAATGTGAGCAT
36572077 GCATATGTGTG
129 GCATATGTGTG
* * * * *
36572088 ATAAGGCCGAATGGCCAATGTGGTGAATATGAACACGCATATATGTGGTAAAGCCGAATGGCTAA
1 ATAAGGCCGAATGGCCAATGT-G-AAATATGAGCATGCATATATGTGATAAAGCCGAATGGCCAA
* * *
36572153 TGTGA-AATATGTATGAGATATGTATATGTG-G-TAAAGCCGAATGGCTAATGTGA-AATATGTA
64 TGTGATAA-ATG--TGAG-CATGCATATGTGTGATAAAGCCGAATGGCCAATGTGATAA-ATG--
*
36572214 TGAGATATGCATATGTG-G
122 TGAG-CATGCATATGTGTG
* * * * *
36572232 -TAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATG--TATATGTGGTAAAGCCGAATG
1 ATAAGGCCGAATGGCCAATGTG----A-A-ATATGAG-CATGCATATATGTGATAAAGCCGAATG
* * * *
36572294 GCTAATGTGA-AATATGTATGAGATATGCATATGTG-G-TAAAGCTGAATGGTCAATGTGAAATA
59 GCCAATGTGATAA-ATG--TGAG-CATGCATATGTGTGATAAAGCCGAATGGCCAATGTG--ATA
* * *
36572356 TATATATGAGATATGTATATGTG-G
118 -A-ATGTGAG-CATGCATATGTGTG
* * * * * *
36572380 -TAAAGCCGAATGGCTAATGTGAAATATGTATG-A-GATATGCATATGTGGTAAAGCTGAATGGT
1 ATAAGGCCGAATGGCCAATGTGAAATATG-A-GCATG-CAT--ATATGTGATAAAGCCGAATGGC
* * * *
36572442 CAATGTGAAATATATATATGAGATATGTATATGTG-G-TAAAGCCGAATGGCTAATGTGA-AATA
61 CAATGTG--ATA-A-ATGTGAG-CATGCATATGTGTGATAAAGCCGAATGGCCAATGTGATAA-A
*
36572504 TGTATGAGATATGCATATGTG-G
120 TG--TGAG-CATGCATATGTGTG
* * *
36572526 -TAAAGCTGAATGGTCAATGTGAAATAT
1 ATAAGGCCGAATGGCCAATGTGAAATAT
36572553 ATATATGAGA
Statistics
Matches: 1087, Mismatches: 50, Indels: 61
0.91 0.04 0.05
Matches are distributed among these distances:
140 1 0.00
141 763 0.70
142 31 0.03
143 24 0.02
144 22 0.02
145 13 0.01
146 143 0.13
147 6 0.01
148 74 0.07
149 2 0.00
150 8 0.01
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (139 bp):
ATAAGGCCGAATGGCCAATGTGAAATATGAGCATGCATATATGTGATAAAGCCGAATGGCCAATG
TGATAAATGTGAGCATGCATATGTGTGATAAAGCCGAATGGCCAATGTGATAAATGTGAGCATGC
ATATGTGTG
Found at i:36572287 original size:98 final size:98
Alignment explanation
Indices: 36572128--36572717 Score: 1096
Period size: 98 Copynumber: 6.0 Consensus size: 98
36572118 GAACACGCAT
* *
36572128 ATATGTGGTAAAGCCGAATGG-CTAATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCTGAATGGTC-AATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
36572190 CGAATGGCTAATGTGAAATATGTATGAGATATGC
65 CGAATGGCTAATGTGAAATATGTATGAGATATGC
36572224 ATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
36572289 GAATGGCTAATGTGAAATATGTATGAGATATGC
66 GAATGGCTAATGTGAAATATGTATGAGATATGC
36572322 ATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
36572387 GAATGGCTAATGTGAAATATGTATGAGATATGC
66 GAATGGCTAATGTGAAATATGTATGAGATATGC
36572420 ATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
36572485 GAATGGCTAATGTGAAATATGTATGAGATATGC
66 GAATGGCTAATGTGAAATATGTATGAGATATGC
36572518 ATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
36572583 GAATGGCTAATGTGAAATATGTATGAGATATGC
66 GAATGGCTAATGTGAAATATGTATGAGATATGC
36572616 ATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
* * * *
36572681 GAATGGCTAGTGTGAAATATGTAGGCGATGTGC
66 GAATGGCTAATGTGAAATATGTATGAGATATGC
36572714 ATAT
1 ATAT
36572718 ATTGTGGCCG
Statistics
Matches: 485, Mismatches: 6, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
96 26 0.05
97 3 0.01
98 456 0.94
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (98 bp):
ATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCC
GAATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:36572899 original size:37 final size:37
Alignment explanation
Indices: 36572849--36572956 Score: 189
Period size: 37 Copynumber: 2.9 Consensus size: 37
36572839 GGAAATATAT
36572849 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
36572886 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
36572923 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
36572957 CCGTCTGAGC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:36582744 original size:20 final size:20
Alignment explanation
Indices: 36582719--36582756 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
36582709 GCTGACAAAA
36582719 CAGTCACTCAAGTTTCAATT
1 CAGTCACTCAAGTTTCAATT
*
36582739 CAGTCACTCAATTTTCAA
1 CAGTCACTCAAGTTTCAA
36582757 AAAATAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (20 bp):
CAGTCACTCAAGTTTCAATT
Found at i:36582947 original size:47 final size:47
Alignment explanation
Indices: 36582886--36582981 Score: 142
Period size: 47 Copynumber: 2.0 Consensus size: 47
36582876 CTCTCCCTTT
36582886 CCCTCTTCCCCACCATCCCT-C-CCTACTTTGATTCTCTCTCCCTCTCC
1 CCCTCTTCCCCACCATCCCTCCTCCTACTTTGATTCT-T-TCCCTCTCC
*
36582933 CCCTCTTCCGCACCATCCCTCCCTCCTACTTTGATTCTTTCCCTCTCC
1 CCCTCTTCCCCACCATCCCT-CCTCCTACTTTGATTCTTTCCCTCTCC
36582981 C
1 C
36582982 TCATTGTCCC
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
47 19 0.42
48 10 0.22
49 2 0.04
50 14 0.31
ACGTcount: A:0.08, C:0.54, G:0.03, T:0.34
Consensus pattern (47 bp):
CCCTCTTCCCCACCATCCCTCCTCCTACTTTGATTCTTTCCCTCTCC
Found at i:36584220 original size:47 final size:46
Alignment explanation
Indices: 36584167--36584272 Score: 151
Period size: 49 Copynumber: 2.3 Consensus size: 46
36584157 GGGACGGTGG
* *
36584167 GGGAGAGGGAA-AGAATTAGAGTAGGAGGAGGGATGGTGGGGAAGA
1 GGGAGAGGGAAGAGAATCAGAGTAGGAGGAGAGATGGTGGGGAAGA
*
36584212 GGAAGAGAGGGAGAGAGAATCAGAGTAGGGGGAGAGATGGTGGGGAAGA
1 GG--GAGAGGGA-AGAGAATCAGAGTAGGAGGAGAGATGGTGGGGAAGA
36584261 GGGAGAGGGAAG
1 GGGAGAGGGAAG
36584273 GGAGAGGGAT
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
45 2 0.04
46 2 0.04
47 16 0.30
48 1 0.02
49 33 0.61
ACGTcount: A:0.36, C:0.01, G:0.55, T:0.08
Consensus pattern (46 bp):
GGGAGAGGGAAGAGAATCAGAGTAGGAGGAGAGATGGTGGGGAAGA
Found at i:36584541 original size:30 final size:30
Alignment explanation
Indices: 36584511--36584567 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
36584501 TCATAAATAT
*
36584511 TTTTTA-AAAATAACAATTTTTCAAGTATA
1 TTTTTATAAAAGAACAATTTTTCAAGTATA
* *
36584540 TTTTTATAGAAGAACAATTTTTTAAGTA
1 TTTTTATAAAAGAACAATTTTTCAAGTA
36584568 AATAAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 6 0.25
30 18 0.75
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.46
Consensus pattern (30 bp):
TTTTTATAAAAGAACAATTTTTCAAGTATA
Found at i:36593558 original size:26 final size:26
Alignment explanation
Indices: 36593529--36593632 Score: 181
Period size: 26 Copynumber: 4.0 Consensus size: 26
36593519 ATTCCCATCT
*
36593529 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
36593555 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
36593581 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
36593607 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
36593633 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:36596593 original size:19 final size:20
Alignment explanation
Indices: 36596555--36596593 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
36596545 AATTATATCC
*
36596555 ATTTATGAACATATATACAT
1 ATTTATGAACATATAAACAT
*
36596575 ATTTATG-ACATGTAAACAT
1 ATTTATGAACATATAAACAT
36596594 TAAGCATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (20 bp):
ATTTATGAACATATAAACAT
Found at i:36600079 original size:30 final size:30
Alignment explanation
Indices: 36600045--36600104 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
36600035 TTTGGATTTC
*
36600045 TCCTATGGATATGGTTACTCGTAATCAGCA
1 TCCTATGGATATGCTTACTCGTAATCAGCA
36600075 TCCTATGGATATGCTTACTCGTAATCAGCA
1 TCCTATGGATATGCTTACTCGTAATCAGCA
36600105 GGGAAATTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (30 bp):
TCCTATGGATATGCTTACTCGTAATCAGCA
Found at i:36602741 original size:37 final size:37
Alignment explanation
Indices: 36602691--36602769 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
36602681 TTATTACGAA
* *
36602691 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
36602728 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
36602765 GTCTT
1 GTCTT
36602770 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:36602966 original size:47 final size:47
Alignment explanation
Indices: 36602888--36603137 Score: 392
Period size: 47 Copynumber: 5.3 Consensus size: 47
36602878 CCCTTCGGGA
* * * * * *
36602888 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36602935 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36602982 CTTATCACATATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36603029 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36603076 CTTATCACAAATATACACTCTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36603123 CTTATCACATATATA
1 CTTATCACATATATA
36603138 TATACACTTT
Statistics
Matches: 186, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 186 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36607191 original size:64 final size:64
Alignment explanation
Indices: 36607090--36607361 Score: 186
Period size: 75 Copynumber: 3.9 Consensus size: 64
36607080 AAAAAAATTG
** *
36607090 AAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCATAATATGAGTTGATAGAAACTA
1 AAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATAGAAACTA
* *
36607154 AAAATACCTTAGCATGTGA-CTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
1 AAAATACCTCAGCATGTGACCT-GAGGCTCAACTCACCTCTCACAATATGAGTTGA------T--
*
36607218 AACATAAACTA
57 ---AGAAACTA
* * * * *
36607229 AAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGACTTTTTTGAA
1 AAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-----TAG-A
*
36607294 AAATAGGA
60 AACT---A
* *
36607302 ACTGAAGATACCTCAGCATGTGACCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 A---AA-ATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGAT
36607362 TTTTTGAAAA
Statistics
Matches: 171, Mismatches: 16, Indels: 34
0.77 0.07 0.15
Matches are distributed among these distances:
63 2 0.01
64 47 0.27
70 5 0.03
72 1 0.01
73 2 0.01
74 5 0.03
75 56 0.33
76 3 0.02
77 50 0.29
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (64 bp):
AAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATAGAAACTA
Found at i:36607411 original size:76 final size:77
Alignment explanation
Indices: 36607144--36607443 Score: 426
Period size: 75 Copynumber: 3.9 Consensus size: 77
36607134 ATATGAGTTG
* *
36607144 ATAGAAACTAAAAATACCTTAGCATGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 ATAGAAACTAAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
36607209 TTTTTTTGAAAC
66 CTTTTTTGAAAA
* *
36607221 AT--AAACTAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA
1 ATAGAAACTAAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
36607284 CTTTTTTGAAAA
66 CTTTTTTGAAAA
* * * * *
36607296 ATAGGAACTGAAGATACCTCAGCATGTGACCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGA
1 ATAGAAACTAAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
36607361 -TTTTTTGAAAA
66 CTTTTTTGAAAA
* * * * *
36607372 ATAGAAATTGAAAATACCTCGGCGTGTGACCCGAGGCTCAACCCACCTCTCGCAATATGAGTTGA
1 ATAGAAACTAAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
36607437 TTTTTTT
66 CTTTTTT
36607444 TTGAAAAAGC
Statistics
Matches: 201, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
75 69 0.34
76 68 0.34
77 64 0.32
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.29
Consensus pattern (77 bp):
ATAGAAACTAAAAATACCTCAGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
CTTTTTTGAAAA
Found at i:36608477 original size:37 final size:37
Alignment explanation
Indices: 36608436--36608510 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
36608426 ATAATATTTC
36608436 TTTACAGCATCTGAGTTCACTTGGTTAGGTAACTCTT
1 TTTACAGCATCTGAGTTCACTTGGTTAGGTAACTCTT
*
36608473 TTTACAGCATCTGAGTTCACTTGGTTAGGTACCTCTT
1 TTTACAGCATCTGAGTTCACTTGGTTAGGTAACTCTT
36608510 T
1 T
36608511 CCCATCCATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (37 bp):
TTTACAGCATCTGAGTTCACTTGGTTAGGTAACTCTT
Found at i:36618722 original size:17 final size:17
Alignment explanation
Indices: 36618689--36618723 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
36618679 GTTTTTATTT
*
36618689 AAAACTAAACTACAAAA
1 AAAACTAAACCACAAAA
*
36618706 AAAACTAAACCATAAAA
1 AAAACTAAACCACAAAA
36618723 A
1 A
36618724 CTTAGAGCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.71, C:0.17, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAACTAAACCACAAAA
Found at i:36628132 original size:44 final size:42
Alignment explanation
Indices: 36628032--36628506 Score: 323
Period size: 44 Copynumber: 10.8 Consensus size: 42
36628022 GAAACAAGAT
**
36628032 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGA
1 TTGGCATCCCTGTGTTTATAGGGAAC-AATCGAAGATTTCAGA
* * * *
36628075 TCTGACA-CTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCA
1 T-TGGCATC-CCTGTGTTTATAGGGAA-CA-ATCGAAGATTTCAG-A
*
36628121 -TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATTTCAGCA
1 TTGGCATCCCTGTGTTTATAGGGAACAA-TCGAAGATTTCAG-A
* * **
36628164 -TGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGA
1 TTGGCATCCCTGTGTTTATAGGGAACAA-TCGAAGATTTCAGA
* *
36628206 TTTGGCATCCCTGTGTTTATGGGGAACAAATCGAAGATAGT-AGA
1 -TTGGCATCCCTGTGTTTATAGGGAAC-AATCGAAGAT-TTCAGA
* * ** * *
36628250 TCTGACATTCCTGTGCATACAGCGAAGCAGATCGAAGATTTCAGCA
1 T-TGGCATCCCTGTGTTTATAGGGAA-CA-ATCGAAGATTTCAG-A
* ***
36628296 -TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGAAGA
1 TTGGCATCCCTGTGTTTATAGGGAACAA-TCGAAGATTTCAGA
* **
36628338 TTTGGCATCCCTGTGTTTATAGGGAACAAATTGAAGATAACAGA
1 -TTGGCATCCCTGTGTTTATAGGGAAC-AATCGAAGATTTCAGA
* * * * *
36628382 TCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCA
1 T-TGGCATCCCTGTGTTTATAGGGAA-CA-ATCGAAGATTTCAG-A
* **
36628428 -TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGA
1 TTGGCATCCCTGTGTTTATAGGGAACAA-TCGAAGATTTCAGA
** * * *
36628470 TTTGGCATCATTGTGCTTACAAGGAACAAATCGAAGA
1 -TTGGCATCCCTGTGTTTATAGGGAAC-AATCGAAGA
36628507 CATAGCTGAT
Statistics
Matches: 343, Mismatches: 61, Indels: 55
0.75 0.13 0.12
Matches are distributed among these distances:
42 6 0.02
43 81 0.24
44 209 0.61
45 44 0.13
46 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (42 bp):
TTGGCATCCCTGTGTTTATAGGGAACAATCGAAGATTTCAGA
Found at i:36628319 original size:175 final size:175
Alignment explanation
Indices: 36628020--36628420 Score: 590
Period size: 175 Copynumber: 2.3 Consensus size: 175
36628010 ATGTAGATCA
36628020 AAGA-AACAAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACT
1 AAGATAAC-AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACT
* *
36628084 CCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAG
65 CCTGTGCATACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAG
*** *
36628149 TTGAAGATTTCAGCA-TGGCATCCCTATGTTTATAGGGAACAAGTTG
130 TTGAAGATAGAAG-ATTGGCATCCCTATGTTTATAGGGAACAAATTG
* * * *
36628195 AAGATAGCAGATTTGGCATCCCTGTGTTTATGGGGAACAAATCGAAGATAGTAGATCTGACATTC
1 AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTC
36628260 CTGTGCATACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGT
66 CTGTGCATACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGT
*
36628325 TGAAGATAGAAGATTTGGCATCCCTGTGTTTATAGGGAACAAATTG
131 TGAAGATAGAAGA-TTGGCATCCCTATGTTTATAGGGAACAAATTG
* * * * * * *
36628371 AAGATAACAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGAT
1 AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAA-CAAATCGAAGAT
36628421 TTCAGCATGG
Statistics
Matches: 202, Mismatches: 20, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
174 1 0.00
175 130 0.64
176 60 0.30
177 11 0.05
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (175 bp):
AAGATAACAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTC
CTGTGCATACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGT
TGAAGATAGAAGATTGGCATCCCTATGTTTATAGGGAACAAATTG
Found at i:36628321 original size:132 final size:132
Alignment explanation
Indices: 36628033--36628506 Score: 607
Period size: 132 Copynumber: 3.6 Consensus size: 132
36628023 AAACAAGATT
* * * * * *
36628033 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACA-CTCCTGTGCTTACAG
1 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATC-CCTGTGTTTATAG
* * ** * * ** * * *
36628097 TGAAGCAGATCGAAGATTTCAG--CATGGCATCCCTGTGTTTATAGGGAA-CA-AGTTGAAGATT
65 GGAA-CAAATCGAAGATAACAGATC-TGACATTCCTGTGCATACAGCGAAGCAGA-TCGAAGATT
36628158 TCAGCA
127 TCAGCA
* *
36628164 TGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATGGG
1 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
**
36628229 GAACAAATCGAAGATAGTAGATCTGACATTCCTGTGCATACAGCGAAGCAGATCGAAGATTTCAG
66 GAACAAATCGAAGATAACAGATCTGACATTCCTGTGCATACAGCGAAGCAGATCGAAGATTTCAG
36628294 CA
131 CA
*
36628296 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGAAGATTTGGCATCCCTGTGTTTATAGG
1 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
* * *
36628361 GAACAAATTGAAGATAACAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
66 GAACAAATCGAAGATAACAGATCTGACATTCCTGTGCATACAGCGAAGCAGATCGAAGATTTCAG
36628426 CA
131 CA
** * * *
36628428 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCATTGTGCTTACAAG
1 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
36628493 GAACAAATCGAAGA
66 GAACAAATCGAAGA
36628507 CATAGCTGAT
Statistics
Matches: 303, Mismatches: 35, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
130 13 0.04
131 75 0.25
132 214 0.71
133 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (132 bp):
TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGG
GAACAAATCGAAGATAACAGATCTGACATTCCTGTGCATACAGCGAAGCAGATCGAAGATTTCAG
CA
Found at i:36628395 original size:88 final size:88
Alignment explanation
Indices: 36628033--36628506 Score: 367
Period size: 88 Copynumber: 5.4 Consensus size: 88
36628023 AAACAAGATT
* * * *
36628033 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACA-CTCCTGTGCTTACAG
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGAT-TGGCATC-CCTGTGTTTATAG
* * * **
36628097 TGAAGCAGATCGAAGATTTCAG--CA
64 GGAA-CAAATTGAAGATAGCAGATCA
* ** *
36628121 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATTTCAGCA-TGGCATCCCTATGTTTATAGG
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAG-ATTGGCATCCCTGTGTTTATAGG
* *
36628185 GAACAAGTTGAAGATAGCAGAT-T
65 GAACAAATTGAAGATAGCAGATCA
* * * * * ** * *
36628208 TGGCATCCCTGTGTTTATGGGGAACAAATCGAAGATAGTAGATCTGACATTCCTGTGCATACAGC
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGAT-TGGCATCCCTGTGTTTATAGG
* * **
36628273 GAAGCAGATCGAAGATTTCAG--CA
65 GAA-CAAATTGAAGATAGCAGATCA
* *
36628296 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGAAGATTTGGCATCCCTGTGTTTATAGG
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGA-TTGGCATCCCTGTGTTTATAGG
*
36628361 GAACAAATTGAAGATAACAGATC-
65 GAACAAATTGAAGATAGCAGATCA
* * * * * **
36628384 TGACATTCCTGTGCTTACAGTGAAGC-AGATCGAAGATTTCAGCA-TGGCATCCCTGTGTTTATA
1 TGGCATCCCTGTGTTTATAGGGAA-CAAG-TCGAAGATAGCAG-ATTGGCATCCCTGTGTTTATA
* *
36628447 GGGAACAAGTTGAAGATAGCAGAT-T
63 GGGAACAAATTGAAGATAGCAGATCA
** * * * *
36628472 TGGCATCATTGTGCTTACAAGGAACAAATCGAAGA
1 TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGA
36628507 CATAGCTGAT
Statistics
Matches: 304, Mismatches: 66, Indels: 33
0.75 0.16 0.08
Matches are distributed among these distances:
86 13 0.04
87 73 0.24
88 192 0.63
89 25 0.08
90 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (88 bp):
TGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGCAGATTGGCATCCCTGTGTTTATAGGG
AACAAATTGAAGATAGCAGATCA
Found at i:36628825 original size:206 final size:206
Alignment explanation
Indices: 36628468--36629407 Score: 1391
Period size: 206 Copynumber: 4.6 Consensus size: 206
36628458 GAAGATAGCA
* * *
36628468 GATTTGGCATCATTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCA-TGGTT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGGGCT
* * *
36628532 TACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGAGAACAAATCGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGG
** * * *
36628597 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCTTTCATATGTTTATATTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
*
36628662 AAATCCAAGGT
196 AAATCCAAGAT
*
36628673 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTTACGGGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGGGCT
* * * *
36628738 TACGATAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTAAGAGAATAAAGCAAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGG
* **
36628803 CGTCTCCATATTCGATGGAGAGCAGACACATAGCAGATCTGGCCTTCATG-TGTTTATACTGAAG
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCA-GATGTTTATACTGAAG
* *
36628867 CAGATCCAAGGT
195 CAAATCCAAGAT
* *
36628879 GATTCGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGGGCT
*
36628944 TACGATGAAGCAAATTTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGG
*
36629009 CGTCTCCATATTCGACGGAGAGTAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
*
36629074 AGATCCAAGAT
196 AAATCCAAGAT
* *
36629085 GATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGGGCT
* * * *
36629150 TACGATGAAGTAAATCTAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAATTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGG
* * * *
36629215 CGTCTCCATATTCGACGGAGGGCAGACACATAACAGATCTAACCTTCAGATGATTAGACTGAAG-
131 CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
36629279 AAGATCCAAGAT
196 AA-ATCCAAGAT
* * * * * * * ** *
36629291 GGTTTGGTATCCTTGTGTTTACAGGGAGCAAATCGAAGACATAGTTGATTTGGTTTTCGTGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGGGCT
* * *
36629356 TATGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTATCAGAAAACA
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACA
36629408 GATCGAAGAT
Statistics
Matches: 675, Mismatches: 56, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
205 59 0.09
206 616 0.91
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (206 bp):
GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGGGCT
TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGG
CGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
AAATCCAAGAT
Found at i:36629860 original size:22 final size:21
Alignment explanation
Indices: 36629801--36629843 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
36629791 AATCATTAAG
36629801 GATATGCAATCTT--AGATAT
1 GATATGCAATCTTGAAGATAT
36629820 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTTGAAGATAT
36629841 GAT
1 GAT
36629844 CTTGTAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.59
21 9 0.41
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (21 bp):
GATATGCAATCTTGAAGATAT
Found at i:36634498 original size:13 final size:13
Alignment explanation
Indices: 36634480--36634504 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36634470 ATAAAGGGCA
36634480 AAAAAATAAAAAT
1 AAAAAATAAAAAT
36634493 AAAAAATAAAAA
1 AAAAAATAAAAA
36634505 CAAAGACGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:36635957 original size:40 final size:40
Alignment explanation
Indices: 36635872--36635967 Score: 115
Period size: 40 Copynumber: 2.5 Consensus size: 40
36635862 CATCTTTGTT
* * * *
36635872 TAACCCAACACACC-A-TGTGGGGATAAAATCGACCCACC
1 TAACCCTACACACCAAGTATGGGAATAAAATCAACCCACC
*
36635910 TAACCCTACACACCAAGTATGGGAATAAAATCAACCCATC
1 TAACCCTACACACCAAGTATGGGAATAAAATCAACCCACC
* *
36635950 TAGCCCTATACACCAAGT
1 TAACCCTACACACCAAGT
36635968 GGTACTGTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
38 13 0.27
39 1 0.02
40 35 0.71
ACGTcount: A:0.39, C:0.32, G:0.12, T:0.17
Consensus pattern (40 bp):
TAACCCTACACACCAAGTATGGGAATAAAATCAACCCACC
Found at i:36640764 original size:42 final size:42
Alignment explanation
Indices: 36640702--36640782 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
36640692 CGTTTATGAA
*
36640702 AAAAACGCCGCTAATAGTCATGACCTTTAGCGGCGCTTTCCC
1 AAAAACGCCGCTAATAGTCATGAACTTTAGCGGCGCTTTCCC
* *
36640744 AAAAATGCCGCTAA-AGGTCATGAATTTTAGCGGCGCTTT
1 AAAAACGCCGCTAATA-GTCATGAACTTTAGCGGCGCTTT
36640783 TNNNNNNNNN
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
41 1 0.03
42 34 0.97
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (42 bp):
AAAAACGCCGCTAATAGTCATGAACTTTAGCGGCGCTTTCCC
Found at i:36646182 original size:40 final size:40
Alignment explanation
Indices: 36646090--36646307 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
36646080 TGGATGATAA
* *
36646090 CCGGGCTAAGTTCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
36646131 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36646171 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36646211 CCGGGCTAAGTCCTGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36646251 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
36646290 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36646308 TACTTGGCTT
Statistics
Matches: 157, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 100 0.64
41 23 0.15
42 4 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36653072 original size:40 final size:40
Alignment explanation
Indices: 36653017--36653234 Score: 291
Period size: 40 Copynumber: 5.5 Consensus size: 40
36653007 TGGATGATAA
* *
36653017 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAG-TGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCT-ACTA-TAT
36653057 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
*
36653097 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* *
36653137 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * *
36653177 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTA-CTATAT
* *
36653217 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36653235 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 16 0.10
40 145 0.90
41 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
Found at i:36658314 original size:31 final size:31
Alignment explanation
Indices: 36658252--36658323 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
36658242 TTCAGAAATA
*
36658252 TGGGCCCACATGCCCGTGTAGCTTACTCGTG
1 TGGGCCCACATGCCCGTGTAGCTTACCCGTG
* * *
36658283 TGGGCCCACATGTCCGTGTGGAC-TGCCCGTG
1 TGGGCCCACATGCCCGTGTAG-CTTACCCGTG
*
36658314 TGGACCCACA
1 TGGGCCCACA
36658324 CGCCTAACTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 34 0.97
32 1 0.03
ACGTcount: A:0.14, C:0.33, G:0.31, T:0.22
Consensus pattern (31 bp):
TGGGCCCACATGCCCGTGTAGCTTACCCGTG
Found at i:36666006 original size:40 final size:40
Alignment explanation
Indices: 36665911--36666814 Score: 1684
Period size: 40 Copynumber: 22.6 Consensus size: 40
36665901 TGGATGATAA
* * **
36665911 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTATTACAT
36665952 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36665992 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666032 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666072 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666112 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666152 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666192 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666232 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666272 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666312 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666352 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666392 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666432 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666472 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666512 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666552 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666592 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666632 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
36666672 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* *
36666712 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
* * * *
36666752 CCGGGCTAAGTCCCGAAGGTATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
*
36666792 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
36666815 GAGCAAGTAG
Statistics
Matches: 852, Mismatches: 10, Indels: 3
0.98 0.01 0.00
Matches are distributed among these distances:
40 824 0.97
41 24 0.03
42 4 0.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
Found at i:36671629 original size:12 final size:12
Alignment explanation
Indices: 36671612--36671649 Score: 76
Period size: 12 Copynumber: 3.2 Consensus size: 12
36671602 CCTTAAAAAT
36671612 TCGGCCTCATAC
1 TCGGCCTCATAC
36671624 TCGGCCTCATAC
1 TCGGCCTCATAC
36671636 TCGGCCTCATAC
1 TCGGCCTCATAC
36671648 TC
1 TC
36671650 TGATAAGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.16, C:0.42, G:0.16, T:0.26
Consensus pattern (12 bp):
TCGGCCTCATAC
Found at i:36681764 original size:42 final size:43
Alignment explanation
Indices: 36681697--36681792 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 43
36681687 TTCTGGCATA
*
36681697 TAGTGCATCA-TGAAAATCTACTGAAGTAATATATCTGGCACCT
1 TAGTGCATCATTGAAAATCTA-TGAAGCAATATATCTGGCACCT
*
36681740 TAGTGCATCATTGAAAAGT-T-TGAAGCAATATATCTTGCACCT
1 TAGTGCATCATTGAAAA-TCTATGAAGCAATATATCTGGCACCT
* *
36681782 CAATGCATCAT
1 TAGTGCATCAT
36681793 ATCATACTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
42 29 0.62
43 10 0.21
44 7 0.15
45 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (43 bp):
TAGTGCATCATTGAAAATCTATGAAGCAATATATCTGGCACCT
Found at i:36686321 original size:311 final size:311
Alignment explanation
Indices: 36685758--36686364 Score: 1020
Period size: 311 Copynumber: 2.0 Consensus size: 311
36685748 AAACAGGCTA
* *
36685758 TTACAACTCTCCCCCTTAGGAAATTTCATCCTCGAAATTTTTACTTGAGAAGACAATTGAGTATT
1 TTACAACTCTCCCCCTTAGAAAATTTCATCCTCAAAATTTTTACTTGAGAAGACAATTGAGTATT
* * *
36685823 GTGACTTCTTTAATTCCTCAGTTCCCCAGGTAGCTTATTTAATACGGAATATGAAAGATAATGAT
66 GTGACTTCTTCAATTCCTCAGTTCCCCAGGTAACTTATGTAATACGGAATATGAAAGATAATGAT
*
36685888 CTACTGACAATCTCGAATAATGTAAAATTTACCCTCAGTTTCACTAATCAAATCTATCCCAAAGC
131 CTACTGACAATCTCGAATAATGAAAAATTTACCCTCAGTTTCACTAATCAAATCTATCCCAAAGC
* * *
36685953 CTCATAGAGTTTCCCCAAAATCTCGAGGTGAATCCCAGATCTTCTTTGGATATAATAGACAATGA
196 CTCATAGAGTTTCCCCAAAATCTCGAGGTGAATCCCAGATCTTCTTCGAAAATAATAGACAATGA
*
36686018 TACTCTGTTTAATCTGACAATCTCTAATACATATAAATGGAAAACGAGTTG
261 TACTCTATTTAATCTGACAATCTCTAATACATATAAATGGAAAACGAGTTG
*
36686069 TTACAACTCTCCTCCTTAGAAAATTTCATCCTCAAAATTTTTACTTGAGAAGACAATCT-AGTAT
1 TTACAACTCTCCCCCTTAGAAAATTTCATCCTCAAAATTTTTACTTGAGAAGACAAT-TGAGTAT
*
36686133 TGTGACTTCTTCAATTCCTCAGTTCCCCATGTAACTTATGTAATACGGAATA-GAAAAGATAATG
65 TGTGACTTCTTCAATTCCTCAGTTCCCCAGGTAACTTATGTAATACGGAATATG-AAAGATAATG
*
36686197 ATCTATTGACAATCTCGAATAATGAAAAATTTACCCTCAGTTTCACTAATCAAATCTATCCCAAA
129 ATCTACTGACAATCTCGAATAATGAAAAATTTACCCTCAGTTTCACTAATCAAATCTATCCCAAA
* * * *
36686262 GCCTCTTAGAGTTTCCTCAAAATCTCTAGGTGAATCCCAGATCTTGTTCGAAAATAATAGACAAT
194 GCCTCATAGAGTTTCCCCAAAATCTCGAGGTGAATCCCAGATCTTCTTCGAAAATAATAGACAAT
*
36686327 GATACTCTATTTAATTTGACAATCTCTAATACATATAA
259 GATACTCTATTTAATCTGACAATCTCTAATACATATAA
36686365 CTCAGCTACT
Statistics
Matches: 276, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
310 1 0.00
311 274 0.99
312 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (311 bp):
TTACAACTCTCCCCCTTAGAAAATTTCATCCTCAAAATTTTTACTTGAGAAGACAATTGAGTATT
GTGACTTCTTCAATTCCTCAGTTCCCCAGGTAACTTATGTAATACGGAATATGAAAGATAATGAT
CTACTGACAATCTCGAATAATGAAAAATTTACCCTCAGTTTCACTAATCAAATCTATCCCAAAGC
CTCATAGAGTTTCCCCAAAATCTCGAGGTGAATCCCAGATCTTCTTCGAAAATAATAGACAATGA
TACTCTATTTAATCTGACAATCTCTAATACATATAAATGGAAAACGAGTTG
Found at i:36691192 original size:22 final size:22
Alignment explanation
Indices: 36691162--36691214 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
36691152 TCTAATTTTG
*
36691162 ATCTATTCTGCAACCGTATCTGA
1 ATCTGTTCTGCAACCGTATCT-A
* *
36691185 AT-TGTTCTGCATCTGTATCTA
1 ATCTGTTCTGCAACCGTATCTA
36691206 ATCTGTTCT
1 ATCTGTTCT
36691215 TTAACTTACC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 3 0.12
22 21 0.81
23 2 0.08
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.43
Consensus pattern (22 bp):
ATCTGTTCTGCAACCGTATCTA
Found at i:36695115 original size:57 final size:57
Alignment explanation
Indices: 36695037--36695157 Score: 172
Period size: 57 Copynumber: 2.1 Consensus size: 57
36695027 TATAAACAGC
* * *
36695037 AATTTATTCAATAACACTAACTCA-CTCATTTAAACAGTACTTCATCCGTATAACAAT
1 AATTCATTCAATAACAATAACTCATC-CATTTAAACAGTACTTCATCCATATAACAAT
* * *
36695094 AATTCATTCAATAATAATAACTCATCCGTTTAAACAGTACTTCATCCATATAACAGT
1 AATTCATTCAATAACAATAACTCATCCATTTAAACAGTACTTCATCCATATAACAAT
36695151 AATTCAT
1 AATTCAT
36695158 CCGTATAACA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
57 56 0.98
58 1 0.02
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.34
Consensus pattern (57 bp):
AATTCATTCAATAACAATAACTCATCCATTTAAACAGTACTTCATCCATATAACAAT
Found at i:36695140 original size:20 final size:19
Alignment explanation
Indices: 36695069--36695167 Score: 92
Period size: 19 Copynumber: 5.2 Consensus size: 19
36695059 CACTCATTTA
*
36695069 AACAGTACTTCATCCGTAT
1 AACAGTAATTCATCCGTAT
* * *
36695088 AACAATAATTCATTC-AAT
1 AACAGTAATTCATCCGTAT
* * * *
36695106 AATAATAACTCATCCGTTT
1 AACAGTAATTCATCCGTAT
* *
36695125 AAACAGTACTTCATCCATAT
1 -AACAGTAATTCATCCGTAT
36695145 AACAGTAATTCATCCGTAT
1 AACAGTAATTCATCCGTAT
36695164 AACA
1 AACA
36695168 CATAGTTTTT
Statistics
Matches: 61, Mismatches: 17, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
18 14 0.23
19 34 0.56
20 13 0.21
ACGTcount: A:0.40, C:0.22, G:0.06, T:0.31
Consensus pattern (19 bp):
AACAGTAATTCATCCGTAT
Found at i:36695407 original size:24 final size:24
Alignment explanation
Indices: 36695350--36695438 Score: 99
Period size: 24 Copynumber: 3.7 Consensus size: 24
36695340 GTTGAAACAG
* *
36695350 TAAGCTCTGACGAGCTGAAAAC-A
1 TAAGCTCTTACGAGCTGAGAACGA
*
36695373 GTAAGCCCTTACGAGCTGAGAACGA
1 -TAAGCTCTTACGAGCTGAGAACGA
* * *
36695398 TAAGCTCTTATGATCTGAGAATGA
1 TAAGCTCTTACGAGCTGAGAACGA
*
36695422 TAAGCTTTTACGAGCTG
1 TAAGCTCTTACGAGCTG
36695439 TGGTGAGTCC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
24 53 0.98
25 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAGCTCTTACGAGCTGAGAACGA
Found at i:36703043 original size:17 final size:17
Alignment explanation
Indices: 36703021--36703054 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36703011 CAGGCGCATG
*
36703021 ACACGGCCGTGTGGGCC
1 ACACGGCCGTGTAGGCC
*
36703038 ACACGGGCGTGTAGGCC
1 ACACGGCCGTGTAGGCC
36703055 CACATGGATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.32, G:0.41, T:0.12
Consensus pattern (17 bp):
ACACGGCCGTGTAGGCC
Found at i:36712868 original size:27 final size:27
Alignment explanation
Indices: 36712836--36712971 Score: 168
Period size: 27 Copynumber: 5.0 Consensus size: 27
36712826 TAAAACCCCC
*
36712836 GATTTGTAAAATTATCGAAATACCCTC
1 GATTTGTAAAATTATCGAAATACCCTT
* *
36712863 GATTTGTGAAATTACCGAAATACCCTT
1 GATTTGTAAAATTATCGAAATACCCTT
* *
36712890 AACTTGTAAAATTA-CTGAAATACCCTT
1 GATTTGTAAAATTATC-GAAATACCCTT
*
36712917 GCTTTGTAAAATTATCGAAATACCCTT
1 GATTTGTAAAATTATCGAAATACCCTT
* *
36712944 G-TAGTGTAAAATTATCGAAATACTCTT
1 GAT-TTGTAAAATTATCGAAATACCCTT
36712971 G
1 G
36712972 TAGGGTAAAA
Statistics
Matches: 95, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.02
27 92 0.97
28 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (27 bp):
GATTTGTAAAATTATCGAAATACCCTT
Found at i:36731878 original size:18 final size:19
Alignment explanation
Indices: 36731852--36731898 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 19
36731842 AATATGGGTG
* *
36731852 ACCAAACGGCCTG-CCCAC
1 ACCACACGGCCTGTCCCAA
*
36731870 ACCACACGGGCGTGTCCCAA
1 ACCACAC-GGCCTGTCCCAA
36731890 ACCACACGG
1 ACCACACGG
36731899 GCGTGTGACC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 6 0.25
19 7 0.29
20 11 0.46
ACGTcount: A:0.28, C:0.45, G:0.21, T:0.06
Consensus pattern (19 bp):
ACCACACGGCCTGTCCCAA
Found at i:36731893 original size:20 final size:20
Alignment explanation
Indices: 36731865--36731904 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
36731855 AAACGGCCTG
*
36731865 CCCACACCACACGGGCGTGT
1 CCCAAACCACACGGGCGTGT
36731885 CCCAAACCACACGGGCGTGT
1 CCCAAACCACACGGGCGTGT
36731905 GACCCCTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.42, G:0.25, T:0.10
Consensus pattern (20 bp):
CCCAAACCACACGGGCGTGT
Found at i:36733088 original size:6 final size:6
Alignment explanation
Indices: 36733079--36733117 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
36733069 AAAAACAACT
* * *
36733079 AAAAAG AAAATG AAAATG AAAATG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
36733118 TAAACTCACT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (6 bp):
AAAAAG
Found at i:36733099 original size:12 final size:12
Alignment explanation
Indices: 36733079--36733117 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
36733069 AAAAACAACT
36733079 AAAAAGAAAATG
1 AAAAAGAAAATG
*
36733091 AAAATGAAAATG
1 AAAAAGAAAATG
*
36733103 AAAAAGAAAAAG
1 AAAAAGAAAATG
36733115 AAA
1 AAA
36733118 TAAACTCACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:36733293 original size:10 final size:10
Alignment explanation
Indices: 36733278--36733337 Score: 50
Period size: 10 Copynumber: 5.8 Consensus size: 10
36733268 CAGATTCGTA
36733278 AAATAAAAAT
1 AAATAAAAAT
*
36733288 AAATAATACAAA
1 AAATAA-A-AAT
* *
36733300 AAATAATAAC
1 AAATAAAAAT
36733310 AAATAAAAAT
1 AAATAAAAAT
36733320 AAA-ATAAAAT
1 AAATA-AAAAT
*
36733330 AAAGAAAA
1 AAATAAAA
36733338 TGGGTAAAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
9 1 0.02
10 30 0.73
11 2 0.05
12 8 0.20
ACGTcount: A:0.78, C:0.03, G:0.02, T:0.17
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:36733314 original size:7 final size:6
Alignment explanation
Indices: 36733277--36733332 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
36733267 ACAGATTCGT
*
36733277 AAAATA AAAATA AATAATA CAAAA-A ATAATA ACAAATA AAAAT- AAAAT-
1 AAAATA AAAATA AA-AATA -AAAATA AAAATA A-AAATA AAAATA AAAATA
36733325 AAAATA AA
1 AAAATA AA
36733333 GAAAATGGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
5 13 0.30
6 17 0.40
7 11 0.26
8 2 0.05
ACGTcount: A:0.79, C:0.04, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:36733329 original size:16 final size:16
Alignment explanation
Indices: 36733276--36733332 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
36733266 AACAGATTCG
36733276 TAAAATAAAAAT-AAA
1 TAAAATAAAAATAAAA
36733291 TAATACA-AAAAATAATAA
1 TAA-A-ATAAAAATAA-AA
*
36733309 -CAAATAAAAATAAAA
1 TAAAATAAAAATAAAA
36733324 TAAAATAAA
1 TAAAATAAA
36733333 GAAAATGGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
15 6 0.18
16 23 0.68
17 3 0.09
18 2 0.06
ACGTcount: A:0.77, C:0.04, G:0.00, T:0.19
Consensus pattern (16 bp):
TAAAATAAAAATAAAA
Found at i:36742104 original size:40 final size:39
Alignment explanation
Indices: 36742006--36742268 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
36741996 TCCTCGTTCA
* * * *
36742006 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
36742045 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
36742084 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
36742124 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
36742164 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
36742204 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
36742245 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36742269 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:36742228 original size:120 final size:119
Alignment explanation
Indices: 36742006--36742268 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
36741996 TCCTCGTTCA
* * *
36742006 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
36742071 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
36742124 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
36742189 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
36742245 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
36742269 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:36742277 original size:41 final size:41
Alignment explanation
Indices: 36742200--36742277 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36742190 TTTGTATCTC
* * *
36742200 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36742241 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36742278 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36748395 original size:242 final size:242
Alignment explanation
Indices: 36747970--36748454 Score: 952
Period size: 242 Copynumber: 2.0 Consensus size: 242
36747960 TCACAACTCG
36747970 AAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTCTAG
1 AAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTCTAG
36748035 AATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGGTCGACT
66 AATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGGTCGACT
36748100 ACACTGACCTTTTCCCATTACGACTTGGATATCTCTCTGCACAGAGCTTCAATACTGATGCCGTT
131 ACACTGACCTTTTCCCATTACGACTTGGATATCTCTCTGCACAGAGCTTCAATACTGATGCCGTT
*
36748165 TGTTTCTATGGAAACTAGACTCAGAGAGGAATCTATACATATAAGGT
196 TGTTTCTATGGAAACTAGACTCAGAGAGGAATCCATACATATAAGGT
36748212 AAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTCTAG
1 AAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTCTAG
36748277 AATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGGTCGACT
66 AATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGGTCGACT
36748342 ACACTGACCTTTTCCCATTACGACTTGGATATCTCTCTGCACAGAGCTTCAATACTGATGCCGTT
131 ACACTGACCTTTTCCCATTACGACTTGGATATCTCTCTGCACAGAGCTTCAATACTGATGCCGTT
*
36748407 TGTTTCTATGGAAACTAGACTCAGAGAGGAATCCATACATATATGGT
196 TGTTTCTATGGAAACTAGACTCAGAGAGGAATCCATACATATAAGGT
36748454 A
1 A
36748455 TGACCCCTAA
Statistics
Matches: 241, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
242 241 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (242 bp):
AAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATGTCCCCACCTATGTATTTTTTTCTAG
AATTTTTGGTCGGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACAGGGGTCGACT
ACACTGACCTTTTCCCATTACGACTTGGATATCTCTCTGCACAGAGCTTCAATACTGATGCCGTT
TGTTTCTATGGAAACTAGACTCAGAGAGGAATCCATACATATAAGGT
Found at i:36749559 original size:40 final size:40
Alignment explanation
Indices: 36749461--36749883 Score: 627
Period size: 40 Copynumber: 10.6 Consensus size: 40
36749451 TCCTCGTTCA
* * * * *
36749461 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
36749500 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36749540 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36749580 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36749620 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36749660 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36749700 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
36749740 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
36749780 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
36749820 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
36749860 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36749884 CAGCATTCAA
Statistics
Matches: 356, Mismatches: 24, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
39 37 0.10
40 311 0.87
41 8 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:36755042 original size:29 final size:30
Alignment explanation
Indices: 36754947--36755031 Score: 136
Period size: 30 Copynumber: 2.9 Consensus size: 30
36754937 AATAGTCTAT
*
36754947 ATTTTTATAATTTTTAAATGATCAAATCAA
1 ATTTTTATAATTTTTGAATGATCAAATCAA
36754977 ATTTTTATAATTTTTGAATGATCAAATCAA
1 ATTTTTATAATTTTTGAATGATCAAATCAA
* *
36755007 ATTTTTATTATTTTTGGATGA-CAAA
1 ATTTTTATAATTTTTGAATGATCAAA
36755032 GTGCAATTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 4 0.08
30 48 0.92
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.48
Consensus pattern (30 bp):
ATTTTTATAATTTTTGAATGATCAAATCAA
Found at i:36755798 original size:43 final size:43
Alignment explanation
Indices: 36755750--36755831 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
36755740 ACTTAATTAA
* *
36755750 AAATAATAATCCAAGGTCCAATTTGATTCTCCGAATGCCAAAT
1 AAATAATAATCCAAGGTCCAAGTTGATTCTCCAAATGCCAAAT
*
36755793 AAATAATAATCCAAGGTCTAAGTTGATTCTCCAAATGCC
1 AAATAATAATCCAAGGTCCAAGTTGATTCTCCAAATGCC
36755832 GAGTCTGGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (43 bp):
AAATAATAATCCAAGGTCCAAGTTGATTCTCCAAATGCCAAAT
Found at i:36759797 original size:20 final size:20
Alignment explanation
Indices: 36759772--36759811 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
36759762 AATTTCTAGA
*
36759772 ACTCAAATTTCACAATTTAT
1 ACTCAAATTTAACAATTTAT
* *
36759792 ACTCAAGTTTAAGAATTTAT
1 ACTCAAATTTAACAATTTAT
36759812 TAAATTTAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.15, G:0.05, T:0.40
Consensus pattern (20 bp):
ACTCAAATTTAACAATTTAT
Found at i:36771641 original size:28 final size:27
Alignment explanation
Indices: 36771584--36771735 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
36771574 TAAATTGTGC
*
36771584 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
36771611 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
36771639 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
36771666 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
36771694 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
36771721 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36771736 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:36771649 original size:55 final size:55
Alignment explanation
Indices: 36771584--36771735 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
36771574 TAAATTGTGC
*
36771584 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
36771639 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
36771694 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
36771736 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:36774776 original size:15 final size:15
Alignment explanation
Indices: 36774756--36774785 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36774746 AAGCAAGTAA
36774756 AGAAATCCAAGATAG
1 AGAAATCCAAGATAG
*
36774771 AGAAATCCGAGATAG
1 AGAAATCCAAGATAG
36774786 GATACCATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.23, T:0.13
Consensus pattern (15 bp):
AGAAATCCAAGATAG
Found at i:36783253 original size:30 final size:30
Alignment explanation
Indices: 36783219--36783279 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
36783209 TCCTTAACTC
36783219 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * * *
36783249 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
36783279 A
1 A
36783280 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:36787709 original size:40 final size:40
Alignment explanation
Indices: 36787626--36787888 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
36787616 TTGAATGCTG
* * * * * *
36787626 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
36787666 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
36787706 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
36787746 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
36787786 TCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
36787826 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
36787865 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
36787889 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 37 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:36792956 original size:98 final size:98
Alignment explanation
Indices: 36792787--36792981 Score: 372
Period size: 98 Copynumber: 2.0 Consensus size: 98
36792777 CTGAATGAAG
*
36792787 CCCATTGTAGCCGAATGTCAATTCACCCGGGGAGTACGAAAATGTACAACGATTTGAAACGTCAC
1 CCCATTGTAGCCGAATGTCAATTCACCCGGGGAGTACGAAAATGTACAACGATTTGAAACGTCAA
36792852 TTTTGGTGGCATGGTATGAAACAGGACATCTCC
66 TTTTGGTGGCATGGTATGAAACAGGACATCTCC
36792885 CCCATTGTAGCCGAATGTCAATTCACCCGGGGAGTACGAAAATGTACAACGATTTGAAACGTCAA
1 CCCATTGTAGCCGAATGTCAATTCACCCGGGGAGTACGAAAATGTACAACGATTTGAAACGTCAA
*
36792950 TTTTGGTGGCATGGTATGAAACGGGACATCTC
66 TTTTGGTGGCATGGTATGAAACAGGACATCTC
36792982 TGACTTTGTT
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.25
Consensus pattern (98 bp):
CCCATTGTAGCCGAATGTCAATTCACCCGGGGAGTACGAAAATGTACAACGATTTGAAACGTCAA
TTTTGGTGGCATGGTATGAAACAGGACATCTCC
Found at i:36795778 original size:80 final size:79
Alignment explanation
Indices: 36795694--36795865 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
36795684 GGACTAAGAT
*
36795694 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
36795758 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
36795774 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
36795839 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
36795853 CCGAAGGCATTTG
1 CCGAAGGCATTTG
36795866 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:36795845 original size:39 final size:39
Alignment explanation
Indices: 36795641--36795863 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
36795631 TTGAATGCTG
* * * * *
36795641 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
36795681 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
36795720 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
36795761 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
36795801 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
36795840 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
36795864 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:36795883 original size:79 final size:80
Alignment explanation
Indices: 36795721--36795898 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
36795711 AGATACAAAT
* * * *
36795721 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
36795786 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
36795801 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
36795865 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
36795880 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
36795899 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:36800514 original size:39 final size:39
Alignment explanation
Indices: 36800471--36800587 Score: 180
Period size: 39 Copynumber: 3.0 Consensus size: 39
36800461 CCAGACATAT
** * *
36800471 TTCCAGCATGTAGCATGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
36800510 TTCCAGCACATAGCCTGCGGACCCTAAGTCCAGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
36800549 TTCCAGCACATAGCCTGCAGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
36800588 ATCACTGAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:36800516 original size:78 final size:78
Alignment explanation
Indices: 36800423--36800587 Score: 174
Period size: 78 Copynumber: 2.1 Consensus size: 78
36800413 GAATTTAAAC
* * * * **
36800423 CCGG-TATAATACCAGCTCCA-AGCCTACGGGA-CTTTAGCCCAGACATATTTCCAGCATGTAGC
1 CCGGATATAATACCAGC-ACATAGCCTAC-GGACCCTAAGCCCAGACATAATTCCAGCACATAGC
* *
36800485 ATGCGGACCTTAAGT
64 ATGCAGACCCTAAGT
* * * * *
36800500 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCAGATATAATTCCAGCACATAGCCT
1 CCGGATATAATACCAGCACATAGCCTACGGACCCTAAGCCCAGACATAATTCCAGCACATAGCAT
36800565 GCAGACCCTAAGT
66 GCAGACCCTAAGT
36800578 CCGGATATAA
1 CCGGATATAA
36800588 ATCACTGAAT
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
77 9 0.12
78 63 0.88
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (78 bp):
CCGGATATAATACCAGCACATAGCCTACGGACCCTAAGCCCAGACATAATTCCAGCACATAGCAT
GCAGACCCTAAGT
Found at i:36811004 original size:39 final size:40
Alignment explanation
Indices: 36810960--36811205 Score: 324
Period size: 40 Copynumber: 6.2 Consensus size: 40
36810950 CCTTCGGAGT
* *
36810960 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
*
36810999 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
36811039 TTAGCCCGGTTATAGTAAGTCGCACAAATGCCTTTGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
36811079 TTAGCCCTGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
36811118 TTAGCCCGGA-ATTAGTCACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
** *
36811157 TTAGCCCGGA-ATTAGCCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
36811197 TTAGCCCGG
1 TTAGCCCGG
36811206 GTATCAATCC
Statistics
Matches: 190, Mismatches: 13, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 77 0.41
40 112 0.59
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:36817729 original size:79 final size:81
Alignment explanation
Indices: 36817620--36817802 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
36817610 TACTCGTTCA
* *
36817620 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* * *
36817683 ATTTAGTGAC-TCGCACC
65 ATATAGTCACTTAGC-CC
**
36817700 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
36817763 TATAGTCACTTAGCCC
66 TATAGTCACTTAGCCC
*
36817779 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
36817803 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 61 0.67
80 27 0.30
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTCACTTAGCCC
Found at i:36817802 original size:40 final size:40
Alignment explanation
Indices: 36817618--36817802 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
36817608 GCTACTCGTT
* *
36817618 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
36817658 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
36817698 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
36817737 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
36817778 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36817803 CATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 80 0.65
41 11 0.09
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:36841620 original size:42 final size:42
Alignment explanation
Indices: 36841512--36841627 Score: 128
Period size: 42 Copynumber: 2.8 Consensus size: 42
36841502 TAAGATTCCG
* *
36841512 TATAAGACCATATCTA-GGATATGGCATCGATATGTGATTTCG
1 TATAAGACCATATC-AGGGATATGGCGTCGATATGTGATTTCA
* * *
36841554 TATAAGACCTTGTCAGGGACATGGCGTCGATATGAT-ATTTCA
1 TATAAGACCATATCAGGGATATGGCGTCGATATG-TGATTTCA
* * *
36841596 TGTAAGACCATATCCGGGATATGGCGTTGATA
1 TATAAGACCATATCAGGGATATGGCGTCGATA
36841628 CGGTACTAAG
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
41 1 0.02
42 59 0.97
43 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (42 bp):
TATAAGACCATATCAGGGATATGGCGTCGATATGTGATTTCA
Found at i:36844435 original size:33 final size:33
Alignment explanation
Indices: 36844397--36844459 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
36844387 GTAAGCAAAT
36844397 AAAGGTAATATTTTTTTTATAAGCAGGAATAAA
1 AAAGGTAATATTTTTTTTATAAGCAGGAATAAA
* *
36844430 AAAGGTATTATTTTTTTTATGAGCAGGAAT
1 AAAGGTAATATTTTTTTTATAAGCAGGAAT
36844460 GGTATGTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (33 bp):
AAAGGTAATATTTTTTTTATAAGCAGGAATAAA
Found at i:36845865 original size:27 final size:27
Alignment explanation
Indices: 36845835--36845896 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
36845825 ATTTACTAAA
*
36845835 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATGACCATT
* *
36845862 ATACCCCT-AGGTGCAAAGTGACCATT
1 ATACCCCTAAGATGCAAAATGACCATT
36845888 ATACCCCTA
1 ATACCCCTA
36845897 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 20 0.67
27 8 0.27
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.26
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATGACCATT
Found at i:36846071 original size:27 final size:27
Alignment explanation
Indices: 36846000--36846114 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
36845990 TGGAGGAAGC
36846000 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
36846027 GTTTCTAGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCACAAATATCT
* *
36846055 GTTCTGGTGGCTCTGCCA-TAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* * *
36846081 GTATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTATGCCACAAATATCT
36846108 GTTCTGG
1 GTTCTGG
36846115 CAGCCATGCT
Statistics
Matches: 79, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
26 14 0.18
27 39 0.49
28 26 0.33
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Done.