Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 112 of 284
Found at i:36850848 original size:27 final size:25
Alignment explanation
Indices: 36850796--36850848 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 25
36850786 AAACTCTTCT
**
36850796 AAAAGAAACTCAAGAGAAATTCTTG
1 AAAAGAAACTCAAGAGAAATAATTG
*
36850821 AAAAGAAAACTCAAAGAGAAGTAATTG
1 AAAAG-AAACTC-AAGAGAAATAATTG
36850848 A
1 A
36850849 TTGCTTTGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 6 0.26
27 12 0.52
ACGTcount: A:0.57, C:0.09, G:0.17, T:0.17
Consensus pattern (25 bp):
AAAAGAAACTCAAGAGAAATAATTG
Found at i:36857135 original size:210 final size:210
Alignment explanation
Indices: 36856773--36857192 Score: 831
Period size: 210 Copynumber: 2.0 Consensus size: 210
36856763 CGCATCATGC
36856773 GCGGTCAGCCAATCCAAACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGC
1 GCGGTCAGCCAATCCAAACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGC
36856838 CGGAAAACAAAAACCTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAAC
66 CGGAAAACAAAAACCTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAAC
*
36856903 GACCCAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTTAACAGGTAGAGTCTTACTGGAT
131 GACACAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTTAACAGGTAGAGTCTTACTGGAT
36856968 GCTAAGGTTTCACAT
196 GCTAAGGTTTCACAT
36856983 GCGGTCAGCCAATCCAAACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGC
1 GCGGTCAGCCAATCCAAACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGC
36857048 CGGAAAACAAAAACCTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAAC
66 CGGAAAACAAAAACCTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAAC
36857113 GACACAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTTAACAGGTAGAGTCTTACTGGAT
131 GACACAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTTAACAGGTAGAGTCTTACTGGAT
36857178 GCTAAGGTTTCACAT
196 GCTAAGGTTTCACAT
36857193 ACATATGAAT
Statistics
Matches: 209, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
210 209 1.00
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.20
Consensus pattern (210 bp):
GCGGTCAGCCAATCCAAACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGC
CGGAAAACAAAAACCTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAAC
GACACAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTTAACAGGTAGAGTCTTACTGGAT
GCTAAGGTTTCACAT
Found at i:36860283 original size:29 final size:29
Alignment explanation
Indices: 36860220--36860287 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
36860210 TAATCAACCG
36860220 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
36860249 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
36860278 CGCACACTTA
1 CGCACACTTA
36860288 CCTTTTCCAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:36860399 original size:174 final size:174
Alignment explanation
Indices: 36860109--36860436 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
36860099 AACTCAAGGT
* * *
36860109 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCACTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
36860174 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
36860239 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
36860283 ACTTACCTTTTCCACTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCACTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
36860348 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
*
36860413 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
36860437 TGTACAATTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCACTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:36860428 original size:29 final size:29
Alignment explanation
Indices: 36860394--36860467 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
36860384 TAATCAACCG
36860394 CGCACACTTAGTGCCATGTAC-TTTAAAC
1 CGCACACTTAGTGCCATGTACATTTAAAC
36860422 TCGCACACTTAGTG-C-TGTACAATTTAAAC
1 -CGCACACTTAGTGCCATGTAC-ATTTAAAC
36860451 CTGCACACTTAGTGCCA
1 C-GCACACTTAGTGCCA
36860468 ATCTCATGAC
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
27 5 0.12
28 2 0.05
29 32 0.80
30 1 0.03
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGTACATTTAAAC
Found at i:36863401 original size:57 final size:57
Alignment explanation
Indices: 36863304--36863418 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
36863294 AAAATGCGAA
36863304 AGTCGATCGTAAAGTTTGTTCAAGTCGTGGATTTGACTTAGGGCTGTAGATGTTCGG
1 AGTCGATCGTAAAGTTTGTTCAAGTCGTGGATTTGACTTAGGGCTGTAGATGTTCGG
* *
36863361 AGTCTATCTTAAAGTTTGTTCAAGTCGTGGATTTGACTTAGGGCTGTAGATGTTCGG
1 AGTCGATCGTAAAGTTTGTTCAAGTCGTGGATTTGACTTAGGGCTGTAGATGTTCGG
36863418 A
1 A
36863419 AAGAAACTTG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.22, C:0.12, G:0.30, T:0.37
Consensus pattern (57 bp):
AGTCGATCGTAAAGTTTGTTCAAGTCGTGGATTTGACTTAGGGCTGTAGATGTTCGG
Found at i:36877341 original size:27 final size:27
Alignment explanation
Indices: 36877311--36877486 Score: 154
Period size: 27 Copynumber: 6.9 Consensus size: 27
36877301 ATTACCAAAG
*
36877311 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
* *
36877338 TACCCTTGATTTATAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACTGTTT
* ****
36877365 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTGTTT
*
36877392 TA-CC-C------T-AAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
*
36877410 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
* * * *
36877437 TAGCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTGTTT
*
36877464 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTATAAAATTACT
36877487 AAAATACCCT
Statistics
Matches: 118, Mismatches: 22, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
18 9 0.08
19 2 0.02
20 1 0.01
25 1 0.01
26 3 0.03
27 102 0.86
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTGTTT
Found at i:36877396 original size:54 final size:54
Alignment explanation
Indices: 36877266--36877514 Score: 156
Period size: 54 Copynumber: 4.8 Consensus size: 54
36877256 AATACTTTAG
* ** * * ***
36877266 TTTACCAAATTACTGAAATACCCTCAAATTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGA
* * *** *
36877320 TTTATAGAATTACTGTTTTACCCTTGATTTATAAAATTACTATTTTACCCTCGA
1 TTTACAAAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGA
* *
36877374 TTTACAAAATTACTAAAATACCC--------T-AAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGA
* * *** * * * **
36877419 TTTATAGAATTACTGTTTTAGCCTTGATTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGA
* * * * *
36877473 TTTACAAAATTACTAAAATACCCTCGGTTTACAGAATTACCA
1 TTTACAAAATTACTGAAATACCCTTGATTTATAAAATTACCA
36877515 AAATACCCTC
Statistics
Matches: 143, Mismatches: 43, Indels: 18
0.70 0.21 0.09
Matches are distributed among these distances:
45 35 0.24
46 1 0.01
54 107 0.75
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37
Consensus pattern (54 bp):
TTTACAAAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGA
Found at i:36877470 original size:99 final size:99
Alignment explanation
Indices: 36877311--36877496 Score: 336
Period size: 99 Copynumber: 1.9 Consensus size: 99
36877301 ATTACCAAAG
*
36877311 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTATAAAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTATTTTACCCTCGATT
36877376 TACAAAATTACTAAAATACCCTAAATTACCGTTT
66 TACAAAATTACTAAAATACCCTAAATTACCGTTT
* * *
36877410 TACCCTCGATTTATAGAATTACTGTTTTAGCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTATTTTACCCTCGATT
36877475 TACAAAATTACTAAAATACCCT
66 TACAAAATTACTAAAATACCCT
36877497 CGGTTTACAG
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 83 1.00
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (99 bp):
TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTATTTTACCCTCGATT
TACAAAATTACTAAAATACCCTAAATTACCGTTT
Found at i:36877494 original size:27 final size:27
Alignment explanation
Indices: 36877464--36877738 Score: 236
Period size: 27 Copynumber: 10.2 Consensus size: 27
36877454 ATTACTGTTT
** *
36877464 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* ** *
36877491 TACCCTCGGTTTACAGAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
***
36877518 TACCCTCGACCAGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * *
36877545 TACCCTAG-TTTGTAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * *
36877571 TACCCTTGGTTTGTAAAATTA-TAGAAA
1 TACCCTCGATTTGTAAAATTACCA-AAA
*
36877598 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
36877625 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * * *
36877652 TACAACT-GGTTTGTGAAATTACCGAAA
1 TAC-CCTCGATTTGTAAAATTACCAAAA
*
36877679 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
** * *
36877706 TACCC-CTGATTTACAAAGTTACAAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
36877733 TACCCT
1 TACCCT
36877739 TGACTTTCTA
Statistics
Matches: 201, Mismatches: 38, Indels: 17
0.79 0.15 0.07
Matches are distributed among these distances:
26 27 0.13
27 172 0.86
28 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:36877782 original size:27 final size:27
Alignment explanation
Indices: 36877749--36877800 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
36877739 TGACTTTCTA
36877749 AAAATTA-TGGAAATACCATTGGTTTAC
1 AAAATTACT-GAAATACCATTGGTTTAC
*
36877776 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCATTGGTTT
36877801 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTACTGAAATACCATTGGTTTAC
Found at i:36877945 original size:27 final size:27
Alignment explanation
Indices: 36877854--36877945 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
36877844 ACCCCTATTA
*
36877854 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
36877881 GGTAAAGA-GACTGTAAAGCCCCTGTAG
1 GGTAAA-ATGACCGTAAAGCCCCTGTAG
* *
36877908 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
36877935 GGTAAAATGAC
1 GGTAAAATGAC
36877946 GAATATGCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
27 55 0.96
28 2 0.04
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:36878700 original size:16 final size:16
Alignment explanation
Indices: 36878679--36878709 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36878669 CAAATATGGG
36878679 CATGACATTCTGCATA
1 CATGACATTCTGCATA
*
36878695 CATGACATTTTGCAT
1 CATGACATTCTGCAT
36878710 TGGGTTCGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (16 bp):
CATGACATTCTGCATA
Found at i:36878772 original size:26 final size:26
Alignment explanation
Indices: 36878743--36878866 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
36878733 GAGGAAGTGC
36878743 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* * **
36878769 AAAAGGGCTTAGGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
36878795 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
36878821 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
36878847 AAAAGGG-TTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
36878867 ATTAAAAGAG
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 12 0.14
26 75 0.86
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:36878821 original size:52 final size:52
Alignment explanation
Indices: 36878743--36878866 Score: 214
Period size: 52 Copynumber: 2.4 Consensus size: 52
36878733 GAGGAAGTGC
*
36878743 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTAGGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTAGGCCCCAGTTTATTG
*
36878795 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTAGGCCCCAGTTTATTG
*
36878847 AAAAGGG-TTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
36878867 ATTAAAAGAG
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 12 0.17
52 57 0.83
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTAGGCCCCAGTTTATTG
Found at i:36879120 original size:31 final size:31
Alignment explanation
Indices: 36879085--36879148 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
36879075 CGTTTATAGT
*
36879085 AAAGGCTTTGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
*
36879116 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
36879147 AA
1 AA
36879149 TGGTTTCAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:36879161 original size:31 final size:31
Alignment explanation
Indices: 36879085--36879163 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
36879075 CGTTTATAGT
** *
36879085 AAAGGCTTTGGCCCAATGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
36879116 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
* *
36879147 AATGGTTTCAGCCCAGT
1 AAAGGCTTCAGCCCAGT
36879164 AACCGTTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:36881456 original size:27 final size:27
Alignment explanation
Indices: 36881398--36881684 Score: 186
Period size: 27 Copynumber: 10.7 Consensus size: 27
36881388 TTAGTTTACC
** * * *
36881398 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
36881425 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ***** *
36881452 GAATTACTGTTTTACCCTTGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* *** *
36881479 AAATTACTATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
36881506 AAATTACTAAAATACCCTCGGTTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
36881533 GAATTACCAAAATACCTTCGA-TCAGTA
1 AAATTACCAAAATACCCTCGATTTA-TA
* *
36881560 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * * * *
36881586 AAATTGCTAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* ** *
36881613 AAATTACAAAAATACCCTTAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
36881640 AAATTACCAAAATACCC-CTGATTTACA
1 AAATTACCAAAATACCCTC-GATTTATA
*
36881667 AAGTTA-CAGAAATACCCT
1 AAATTACCA-AAATACCCT
36881685 TGACTTTCTA
Statistics
Matches: 209, Mismatches: 45, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
26 23 0.11
27 186 0.89
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:36881522 original size:54 final size:54
Alignment explanation
Indices: 36881392--36881767 Score: 247
Period size: 54 Copynumber: 6.9 Consensus size: 54
36881382 AATACTTTAG
* * ** * *
36881392 TTTACCAAATTACTGAAATACCCTCAAATTGTAAAATTACCAAAGTACCCTCGA
1 TTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCGA
* * **** * * ***
36881446 TTTATAGAATTACTGTTTTACCCTTGATTTATAAAATTACTATTTTACCCTCGA
1 TTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCGA
* * ** * *
36881500 TTTACAAAATTACTAAAATACCCTCGGTTTACAGAATTACCAAAATACCTTCGA
1 TTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCGA
* * * * * * * *
36881554 -TCAGTAAAATTACCAAAATACCCTAG-TTTGTAAAATTGCTAAAATACCCTTGG
1 TTTA-CAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCGA
** * *
36881607 TTTGTAAAATTACAAAAATACCCTTAATTTGTAAAATTACCAAAATACCC-CTGA
1 TTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTC-GA
* * *** * * *
36881661 TTTACAAAGTTAC-AGAAATACCCTTGACTTTCTAAAAATTATGGAAATACCATTGG
1 TTTACAAAATTACTA-AAATACCCTTGA-TTTGT-AAAATTACCAAAATACCCTCGA
* * * * *
36881717 TTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAACACCCT
1 TTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCT
36881768 TGTAGGATGA
Statistics
Matches: 241, Mismatches: 72, Indels: 18
0.73 0.22 0.05
Matches are distributed among these distances:
53 41 0.17
54 154 0.64
55 8 0.03
56 38 0.16
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (54 bp):
TTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCGA
Found at i:36881609 original size:80 final size:80
Alignment explanation
Indices: 36881505--36881656 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 80
36881495 CTCGATTTAC
* * *
36881505 AAAATTACTAAAATACCCTCGGTTTACAGAATTACCAAAATA-CCTTCGATCAGTAAAATTACCA
1 AAAATTACTAAAATACCCTCGGTTTACAAAATTACAAAAATACCCTT-AATCAGTAAAATTACCA
36881569 AAATACCCTAGTTTGT
65 AAATACCCTAGTTTGT
* * ** **
36881585 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACAAAAATACCCTTAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACCCTCGGTTTACAAAATTACAAAAATACCCTTAATCAGTAAAATTACCAA
36881650 AATACCC
66 AATACCC
36881657 CTGATTTACA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
80 58 0.94
81 4 0.06
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTCGGTTTACAAAATTACAAAAATACCCTTAATCAGTAAAATTACCAA
AATACCCTAGTTTGT
Found at i:36881734 original size:27 final size:27
Alignment explanation
Indices: 36881464--36881746 Score: 171
Period size: 27 Copynumber: 10.4 Consensus size: 27
36881454 ATTACTGTTT
* * ***
36881464 TACCCTTGATTTATAAAATTACTATTT
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
36881491 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * *
36881518 TACCCTCGGTTTACAGAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * * * *
36881545 TA-CCTTCGATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTA-CAAAATTACTAAAA
* ** *
36881572 TACCC-TAGTTTGTAAAATTGCTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
** *
36881598 TACCCTTGGTTTGTAAAATTACAAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
** ** *
36881625 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * *
36881652 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGGTTTACAAAATTACTA-AAA
* *
36881679 TACCCTTGACTTT-CTAAAAATTA-TGGAAA
1 TACCCTTG-GTTTAC--AAAATTACT-AAAA
* *
36881708 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
36881735 TACCCTTGGTTT
1 TACCCTTGGTTT
36881747 GTAGATTTAC
Statistics
Matches: 207, Mismatches: 38, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
26 24 0.12
27 157 0.76
28 9 0.04
29 17 0.08
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:36881823 original size:27 final size:27
Alignment explanation
Indices: 36881791--36881887 Score: 97
Period size: 27 Copynumber: 3.6 Consensus size: 27
36881781 GACTAAAATA
*
36881791 CCCCTATTAGGTAAAAAGACCGTAAAG
1 CCCCTATAAGGTAAAAAGACCGTAAAG
* *
36881818 CCCCTATAAGGTAAAGAGATCGTAAAG
1 CCCCTATAAGGTAAAAAGACCGTAAAG
* * **
36881845 CCCCTGTAGGGTAAAGTGACCGTAATA-
1 CCCCTATAAGGTAAAAAGACCGTAA-AG
* *
36881872 CCCCTGTATGGTAAAA
1 CCCCTATAAGGTAAAA
36881888 TGATGAATAT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (27 bp):
CCCCTATAAGGTAAAAAGACCGTAAAG
Found at i:36882719 original size:26 final size:26
Alignment explanation
Indices: 36882690--36882877 Score: 258
Period size: 26 Copynumber: 7.3 Consensus size: 26
36882680 GAGGAAGTGC
36882690 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
36882716 AAAAGGGCTTATGCCCCAATTTAACG
1 AAAAGGGCTTATGCCCCAGTTTATTG
36882742 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
36882768 AAAAGGGCTTATACCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
36882794 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
36882820 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
36882845 AAAAGGG-TTTTGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
36882868 AAAAGAGGCT
1 AAAAG-GGCT
36882878 AGGCCTCCAG
Statistics
Matches: 143, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
23 5 0.03
24 7 0.05
25 29 0.20
26 102 0.71
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:36882768 original size:52 final size:52
Alignment explanation
Indices: 36882690--36882877 Score: 303
Period size: 52 Copynumber: 3.7 Consensus size: 52
36882680 GAGGAAGTGC
* *
36882690 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAATTTAACG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
36882742 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATACCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
36882794 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
36882845 AAAAGGG-TTTTGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
36882878 AGGCCTCCAG
Statistics
Matches: 130, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
48 5 0.04
49 9 0.07
50 10 0.08
51 21 0.16
52 85 0.65
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:36883119 original size:30 final size:31
Alignment explanation
Indices: 36883083--36883152 Score: 106
Period size: 30 Copynumber: 2.3 Consensus size: 31
36883073 CGTTTACAAT
*
36883083 AAAGGCTTCAGCCCAATGATATGA-TTATGA
1 AAAGGCTTCAGCCCAATGATATGATTTATAA
* *
36883113 AAAGGCTTCGGCCCAGTGATATGATTTATAA
1 AAAGGCTTCAGCCCAATGATATGATTTATAA
36883144 AAAGGCTTC
1 AAAGGCTTC
36883153 TTCCCAGTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 22 0.61
31 14 0.39
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAATGATATGATTTATAA
Found at i:36892275 original size:40 final size:39
Alignment explanation
Indices: 36892191--36892375 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
36892181 TTGAATGATG
* * * *
36892191 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
36892231 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
36892271 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
36892310 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
36892351 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
36892376 AACTAGTAGC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:36892327 original size:79 final size:81
Alignment explanation
Indices: 36892191--36892375 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
36892181 TTGAATGATG
* *
36892191 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
36892255 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36892270 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36892332 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* * *
36892350 ACTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36892376 AACTAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:36892397 original size:79 final size:79
Alignment explanation
Indices: 36892244--36892408 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
36892234 GGACTAAGAT
* * **
36892244 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
36892309 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
36892323 CCGAAGGCAATTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCATTTGAACTAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
36892386 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
36892402 CCGAAGG
1 CCGAAGG
36892409 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:36901295 original size:28 final size:29
Alignment explanation
Indices: 36901263--36901377 Score: 112
Period size: 29 Copynumber: 4.0 Consensus size: 29
36901253 TACCTGTATG
* *
36901263 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * *
36901291 TGGCCCATGAGGCCCAAATTACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
36901320 TGGCCCAATT-GGCCCAAATCACATTTATA
1 TGGCCC-ATTAGGCCCAAATCACATTCATA
* *
36901349 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
36901377 T
1 T
36901378 TCATGCTCAC
Statistics
Matches: 71, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
28 28 0.39
29 40 0.56
30 3 0.04
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:36905874 original size:18 final size:19
Alignment explanation
Indices: 36905851--36905890 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
36905841 GCCTCTCGAT
36905851 GGTGGCTG-ACCACC-CCTC
1 GGTGGCTGTA-CACCACCTC
36905869 GGTGGCTGTACACCACCTC
1 GGTGGCTGTACACCACCTC
36905888 GGT
1 GGT
36905891 CCACAACTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.12, C:0.38, G:0.30, T:0.20
Consensus pattern (19 bp):
GGTGGCTGTACACCACCTC
Found at i:36908526 original size:29 final size:28
Alignment explanation
Indices: 36908469--36908554 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
36908459 TTCCTGTATG
* * *
36908469 TGGCCCATTAAGTCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
36908497 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* *
36908526 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
36908554 T
1 T
36908555 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 25 0.50
29 25 0.50
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:36912510 original size:50 final size:49
Alignment explanation
Indices: 36912384--36912559 Score: 226
Period size: 50 Copynumber: 3.5 Consensus size: 49
36912374 TGAGGTCGCA
* * *
36912384 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAA-TT-GGTCACG
* * **
36912435 TGTGTAGTACTAAGTGCAGGTTACTACGTGTATCTGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAATT-GGTCACG
* * * *
36912485 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAATTGGTCACG
36912534 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
36912560 TGCGTACCAG
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
49 31 0.28
50 44 0.40
51 34 0.31
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAATTGGTCACG
Found at i:36912567 original size:49 final size:50
Alignment explanation
Indices: 36912376--36912572 Score: 225
Period size: 50 Copynumber: 3.9 Consensus size: 50
36912366 ATCTATTGTG
* *
36912376 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCTGATAA-TT
* * * * * * **
36912427 CGATCACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTATCTGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCTGATAATT
* ** *
36912477 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCTGATAATT
* * *
36912527 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCTGATA
36912573 GCTTTGGCTA
Statistics
Matches: 122, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
49 40 0.33
50 44 0.36
51 38 0.31
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCTGATAATT
Found at i:36924089 original size:13 final size:13
Alignment explanation
Indices: 36924071--36924096 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36924061 ATATTATAAT
36924071 TATTTTATGTTAA
1 TATTTTATGTTAA
36924084 TATTTTATGTTAA
1 TATTTTATGTTAA
36924097 AAATAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:36924593 original size:94 final size:94
Alignment explanation
Indices: 36924457--36924644 Score: 367
Period size: 94 Copynumber: 2.0 Consensus size: 94
36924447 AATGAATAAT
36924457 AATAAATCATCTAGTGAATTGGTGTAATTGCCGAATTTGAACTAGGAAGTTATTGAGAAATGTTT
1 AATAAATCATCTAGTGAATTGGTGTAATTGCCGAATTTGAACTAGGAAGTTATTGAGAAATGTTT
*
36924522 GTACTTTAAGTGATAGAATAGAGTGAATG
66 GTACTTTAAGTGATAAAATAGAGTGAATG
36924551 AATAAATCATCTAGTGAATTGGTGTAATTGCCGAATTTGAACTAGGAAGTTATTGAGAAATGTTT
1 AATAAATCATCTAGTGAATTGGTGTAATTGCCGAATTTGAACTAGGAAGTTATTGAGAAATGTTT
36924616 GTACTTTAAGTGATAAAATAGAGTGAATG
66 GTACTTTAAGTGATAAAATAGAGTGAATG
36924645 CTTGGAATGT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 93 1.00
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.34
Consensus pattern (94 bp):
AATAAATCATCTAGTGAATTGGTGTAATTGCCGAATTTGAACTAGGAAGTTATTGAGAAATGTTT
GTACTTTAAGTGATAAAATAGAGTGAATG
Found at i:36925657 original size:40 final size:40
Alignment explanation
Indices: 36925548--36925724 Score: 261
Period size: 40 Copynumber: 4.5 Consensus size: 40
36925538 CGGATGATAA
*
36925548 CCGGACTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
*
36925588 CCGGGCTAA-TCCCAAAGGCATTTGTGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
* * *
36925627 CCAGGCTAAGTCCCGAAGGCATCTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
*
36925667 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATAT
*
36925707 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36925725 TACTTGGGTT
Statistics
Matches: 124, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
39 52 0.42
40 71 0.57
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT
Found at i:36925713 original size:79 final size:78
Alignment explanation
Indices: 36925548--36925724 Score: 266
Period size: 79 Copynumber: 2.2 Consensus size: 78
36925538 CGGATGATAA
*
36925548 CCGGACTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAATCCCAAAGGCATTTGT
1 CCGG-CTAAGTCCCGAAGGCATCTGTGCTAGTGACTATATCCGGGCTAATCCCAAAGGCATTTGT
*
36925613 GCTAGTGACTATAT
65 GCGAGTGACTATAT
* *
36925627 CCAGGCTAAGTCCCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CC-GGCTAAGTCCCGAAGGCATCTGTGCTAGTGACTATATCCGGGCTAA-TCCCAAAGGCATTTG
36925692 TGCGAGTTG-CTATAT
64 TGCGAG-TGACTATAT
*
36925707 CCGGCTAAATCCCGAAGG
1 CCGGCTAAGTCCCGAAGG
36925725 TACTTGGGTT
Statistics
Matches: 90, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
79 59 0.66
80 29 0.32
81 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (78 bp):
CCGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACTATATCCGGGCTAATCCCAAAGGCATTTGTG
CGAGTGACTATAT
Found at i:36929777 original size:25 final size:25
Alignment explanation
Indices: 36929743--36929790 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
36929733 CGGGTATTCG
36929743 AGTTTGAATGGACAGGAAAATGTTA
1 AGTTTGAATGGACAGGAAAATGTTA
36929768 AGTTTGAATGGACAGGAAAATGT
1 AGTTTGAATGGACAGGAAAATGT
36929791 CAGAAAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.29, T:0.27
Consensus pattern (25 bp):
AGTTTGAATGGACAGGAAAATGTTA
Found at i:36940928 original size:40 final size:40
Alignment explanation
Indices: 36940815--36941069 Score: 337
Period size: 40 Copynumber: 6.5 Consensus size: 40
36940805 TGGATGATAA
* * *
36940815 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
36940855 CCGGGC-AAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36940893 CCGGGCTAAGTCCCGAAGGTATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36940933 CCGGGCTAAGTCCCGAAGGCATTTGTGGGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
36940973 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
*
36941014 -CGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
36941052 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36941070 TACTTGGTTG
Statistics
Matches: 195, Mismatches: 12, Indels: 18
0.87 0.05 0.08
Matches are distributed among these distances:
37 1 0.01
38 37 0.19
39 36 0.18
40 117 0.60
41 4 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36944557 original size:40 final size:40
Alignment explanation
Indices: 36944490--36944661 Score: 215
Period size: 40 Copynumber: 4.3 Consensus size: 40
36944480 ACCCAAGTAT
* *
36944490 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTAGCACAAATGC
* *
36944529 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGG
1 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
* *
36944569 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTAGCACAAATGC
* * *
36944609 CTTCGGGACATAGCCCGGATATAGCAACTAGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
*
36944649 CTTCGGATCTTAG
1 CTTCGGGTCTTAG
36944662 TCTGGTTATC
Statistics
Matches: 115, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 99 0.86
41 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:36947771 original size:40 final size:40
Alignment explanation
Indices: 36947716--36947921 Score: 317
Period size: 40 Copynumber: 5.2 Consensus size: 40
36947706 GGACTAAGAT
*
36947716 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAGGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
36947756 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
36947796 CCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
36947836 CCGAAGGCATCTGTGCTAGTTACTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
36947876 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
36947915 CCGAAGG
1 CCGAAGG
36947922 TACTTGGGTT
Statistics
Matches: 152, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.09
40 137 0.90
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:36955148 original size:40 final size:40
Alignment explanation
Indices: 36955075--36955150 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
36955065 GCATTTCTGT
* *
36955075 TACTGTTACTGAAATGGGCTAAGGCTCACACTGATATTGA
1 TACTGATACTGAAATGGGCTAAGGCCCACACTGATATTGA
*
36955115 TACTGATACTGTAATGGGCTAAGGCCCTA-ACTGATA
1 TACTGATACTGAAATGGGCTAAGGCCC-ACACTGATA
36955151 CTGGACTGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
40 31 0.97
41 1 0.03
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (40 bp):
TACTGATACTGAAATGGGCTAAGGCCCACACTGATATTGA
Found at i:36957062 original size:78 final size:78
Alignment explanation
Indices: 36956933--36957119 Score: 374
Period size: 78 Copynumber: 2.4 Consensus size: 78
36956923 TTTGCAGAAC
36956933 AAATCAGATCAAACAACAGAAACAGATTAAGGGGTGAGTTTGGAAAACTCAGTGTGTAAAATAAC
1 AAATCAGATCAAACAACAGAAACAGATTAAGGGGTGAGTTTGGAAAACTCAGTGTGTAAAATAAC
36956998 CCAACTATAGTCT
66 CCAACTATAGTCT
36957011 AAATCAGATCAAACAACAGAAACAGATTAAGGGGTGAGTTTGGAAAACTCAGTGTGTAAAATAAC
1 AAATCAGATCAAACAACAGAAACAGATTAAGGGGTGAGTTTGGAAAACTCAGTGTGTAAAATAAC
36957076 CCAACTATAGTCT
66 CCAACTATAGTCT
36957089 AAATCAGATCAAACAACAGAAACAGATTAAG
1 AAATCAGATCAAACAACAGAAACAGATTAAG
36957120 TTGGGCCTTA
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 109 1.00
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20
Consensus pattern (78 bp):
AAATCAGATCAAACAACAGAAACAGATTAAGGGGTGAGTTTGGAAAACTCAGTGTGTAAAATAAC
CCAACTATAGTCT
Found at i:36957352 original size:27 final size:27
Alignment explanation
Indices: 36957312--36957426 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
36957302 AGCATGGCTG
* *
36957312 CTAGAACAGATA-TTGTGACAAAGTCA
1 CTAGAACAGATATTTGTGGCAAAGCCA
36957338 CTAGATACAGATA-TTGTGGCAAAGCCA
1 CTAGA-ACAGATATTTGTGGCAAAGCCA
* *
36957365 CCAGAACAGATATTTGTGGCATAGCCA
1 CTAGAACAGATATTTGTGGCAAAGCCA
* *
36957392 CCAGAAACAGATATTTGTGGCATAGCCA
1 CTAG-AACAGATATTTGTGGCAAAGCCA
36957420 CTAGAAC
1 CTAGAAC
36957427 GCTTCCTCCA
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
26 12 0.15
27 43 0.53
28 26 0.32
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (27 bp):
CTAGAACAGATATTTGTGGCAAAGCCA
Found at i:36965842 original size:39 final size:40
Alignment explanation
Indices: 36965797--36965928 Score: 176
Period size: 40 Copynumber: 3.3 Consensus size: 40
36965787 GCTCCTCGTT
* * *
36965797 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
36965837 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
36965876 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
36965916 CAAAGGCCTTCGG
1 CAAATGCCTTCGG
36965929 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 34 0.43
40 46 0.57
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:36967690 original size:27 final size:27
Alignment explanation
Indices: 36967652--36967706 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
36967642 CCCAAAATTT
36967652 TTACAAATTCATCAAAGGGTAATAACA
1 TTACAAATTCATCAAAGGGTAATAACA
36967679 TTACAAATTCATCAAAGGGTAATAACA
1 TTACAAATTCATCAAAGGGTAATAACA
36967706 T
1 T
36967707 CAAATCAGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.27
Consensus pattern (27 bp):
TTACAAATTCATCAAAGGGTAATAACA
Found at i:36970968 original size:43 final size:45
Alignment explanation
Indices: 36970848--36971003 Score: 128
Period size: 43 Copynumber: 3.6 Consensus size: 45
36970838 AGCTCGTACA
** *
36970848 ATGCCAACATCCCAGACGTGGTCTTACAT-GT-AATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATCGTAAATCAAATATCG
* * * * *
36970891 ATGCCACTGTCCGAGATAGGGTCTTACA-C-AAAATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATCGTAAATCAAATATCG
* * * *
36970933 ATGCCAATGTCCCAGACATAGTCTTA-ATCGTAAATCTAA-GTCA
1 ATGCCAATGTCCCAGACATGGTCTTACATCGTAAATCAAATATCG
* * *
36970976 ATGCCTATATCCCAGATATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
36971004 CGAATACACA
Statistics
Matches: 86, Mismatches: 21, Indels: 11
0.73 0.18 0.09
Matches are distributed among these distances:
41 1 0.01
42 24 0.28
43 60 0.70
44 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (45 bp):
ATGCCAATGTCCCAGACATGGTCTTACATCGTAAATCAAATATCG
Found at i:36973720 original size:22 final size:21
Alignment explanation
Indices: 36973684--36973724 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
36973674 GAGCCGAAGC
*
36973684 TTTCCTGAAGTTTCCTAGCAA
1 TTTCCTGAAGCTTCCTAGCAA
36973705 TTTCCTTGAAGCTTCCTAGC
1 TTTCC-TGAAGCTTCCTAGC
36973725 TAGCTGAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.39
Consensus pattern (21 bp):
TTTCCTGAAGCTTCCTAGCAA
Found at i:36980824 original size:10 final size:10
Alignment explanation
Indices: 36980811--36980843 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
36980801 AAATTAAGTA
36980811 GGAGCTGAAT
1 GGAGCTGAAT
36980821 GGAGCTGAAT
1 GGAGCTGAAT
*
36980831 GGAGCTGGAT
1 GGAGCTGAAT
36980841 GGA
1 GGA
36980844 CTAGGCTAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.45, T:0.18
Consensus pattern (10 bp):
GGAGCTGAAT
Found at i:36985840 original size:10 final size:10
Alignment explanation
Indices: 36985827--36985859 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
36985817 AAATTAAGTA
36985827 GGAGCTGAAT
1 GGAGCTGAAT
36985837 GGAGCTGAAT
1 GGAGCTGAAT
*
36985847 GGAGCTGGAT
1 GGAGCTGAAT
36985857 GGA
1 GGA
36985860 CTAGGCTAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.45, T:0.18
Consensus pattern (10 bp):
GGAGCTGAAT
Found at i:36990029 original size:21 final size:20
Alignment explanation
Indices: 36990005--36990059 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 20
36989995 TGATAATGAG
*
36990005 AAAAAATGAGCGAAAAATAAA
1 AAAAAATGAGAGAAAAA-AAA
* *
36990026 AAAAATTGAGAG---AAGAA
1 AAAAAATGAGAGAAAAAAAA
36990043 AAAAAATGAGAGAAAAA
1 AAAAAATGAGAGAAAAA
36990060 GAAATTGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 7
0.71 0.11 0.18
Matches are distributed among these distances:
17 13 0.48
18 2 0.07
20 2 0.07
21 10 0.37
ACGTcount: A:0.71, C:0.02, G:0.18, T:0.09
Consensus pattern (20 bp):
AAAAAATGAGAGAAAAAAAA
Found at i:36990044 original size:17 final size:16
Alignment explanation
Indices: 36990023--36990067 Score: 63
Period size: 17 Copynumber: 2.8 Consensus size: 16
36990013 AGCGAAAAAT
36990023 AAAAAAAATTGAGAGA
1 AAAAAAAATTGAGAGA
*
36990039 AGAAAAAAAATGAGAGA
1 A-AAAAAAATTGAGAGA
*
36990056 AAAAGAAATTGA
1 AAAAAAAATTGA
36990068 AAAAAAAGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 10 0.40
17 15 0.60
ACGTcount: A:0.69, C:0.00, G:0.20, T:0.11
Consensus pattern (16 bp):
AAAAAAAATTGAGAGA
Found at i:36992373 original size:9 final size:10
Alignment explanation
Indices: 36992361--36992413 Score: 58
Period size: 11 Copynumber: 5.4 Consensus size: 10
36992351 TATGATGTAC
36992361 ATGA-ATGAT
1 ATGATATGAT
36992370 ATGATATGCAT
1 ATGATATG-AT
36992381 ATGATATG-T
1 ATGATATGAT
*
36992390 ATGATATGCAC
1 ATGATATG-AT
36992401 ATGATATG-T
1 ATGATATGAT
36992410 ATGA
1 ATGA
36992414 AATGCACATG
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
9 17 0.45
10 3 0.08
11 18 0.47
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.36
Consensus pattern (10 bp):
ATGATATGAT
Found at i:36992384 original size:11 final size:11
Alignment explanation
Indices: 36992368--36992425 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
36992358 TACATGAATG
36992368 ATATGATATGC
1 ATATGATATGC
36992379 ATATGATATG-
1 ATATGATATGC
36992389 -TATGATATGC
1 ATATGATATGC
*
36992399 ACATGATATG-
1 ATATGATATGC
*
36992409 -TATGAAATGC
1 ATATGATATGC
*
36992419 ACATGAT
1 ATATGAT
36992426 GTAATCATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
9 16 0.42
11 22 0.58
ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34
Consensus pattern (11 bp):
ATATGATATGC
Found at i:36992392 original size:20 final size:20
Alignment explanation
Indices: 36992359--36992425 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
36992349 GATATGATGT
36992359 ACATGA-ATGATATGATATGC
1 ACATGATATG-TATGATATGC
*
36992379 ATATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
36992399 ACATGATATGTATGAAATGC
1 ACATGATATGTATGATATGC
36992419 ACATGAT
1 ACATGAT
36992426 GTAATCATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 40 0.93
21 3 0.07
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:36992522 original size:26 final size:26
Alignment explanation
Indices: 36992475--36992558 Score: 113
Period size: 26 Copynumber: 3.3 Consensus size: 26
36992465 GAGGAAGTGC
36992475 AAAAGGGCTTA-GCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
36992500 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
36992526 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
36992549 AAAAGAGGCT
1 AAAAG-GGCT
36992559 AGGCCTCCAA
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
23 5 0.09
24 7 0.13
25 19 0.36
26 22 0.42
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:36992804 original size:31 final size:31
Alignment explanation
Indices: 36992769--36992832 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36992759 CCGTTAAACG
*
36992769 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
**
36992800 AAAGGCTTCAGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
36992831 AA
1 AA
36992833 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:37000370 original size:85 final size:85
Alignment explanation
Indices: 37000227--37000392 Score: 305
Period size: 85 Copynumber: 2.0 Consensus size: 85
37000217 GGTGGCCGAG
37000227 TATGGGTAAAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGC
1 TATGGGTAAAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGC
*
37000292 AGCAAGGTATAGGGTCAAGA
66 AGCAAGGCATAGGGTCAAGA
*
37000312 TATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGC
1 TATGGGTAAAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGC
*
37000377 AGCAAGGCGTAGGGTC
66 AGCAAGGCATAGGGTC
37000393 GACTTGGATT
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 78 1.00
ACGTcount: A:0.20, C:0.10, G:0.28, T:0.42
Consensus pattern (85 bp):
TATGGGTAAAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGC
AGCAAGGCATAGGGTCAAGA
Found at i:37000962 original size:711 final size:711
Alignment explanation
Indices: 36999600--37001018 Score: 2741
Period size: 711 Copynumber: 2.0 Consensus size: 711
36999590 AGGTGGCCGA
36999600 ATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAG
1 ATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAG
36999665 CAGCAAGGCGTAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCAAT
66 CAGCAAGGCGTAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCAAT
36999730 TTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATATTA
131 TTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATATTA
36999795 GATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAATC
196 GATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAATC
* *
36999860 GTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTTCATATCTT
261 GTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGCTT
*
36999925 AGAATGAGCAAGCGAATGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTGGA
326 AGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTGGA
36999990 AAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCCCA
391 AAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCCCA
* *
37000055 ATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTGGAAGAGTTGCATGTGAA
456 ATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTGAA
*
37000120 CACGGTTAGTACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTAGG
521 CACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTAGG
37000185 GCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCCGAGTATGGGTAAAGGCCTTATTGGGC
586 GCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCCGAGTATGGGTAAAGGCCTTATTGGGC
*
37000250 TTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGCAGCAAGGTATAGGGTCAAG
651 TTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGCAGCAAGGCATAGGGTCAAG
37000311 ATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAG
1 ATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAG
37000376 CAGCAAGGCGTAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCAAT
66 CAGCAAGGCGTAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCAAT
37000441 TTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATATTA
131 TTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATATTA
37000506 GATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAATC
196 GATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAATC
37000571 GTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGCTT
261 GTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGCTT
37000636 AGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTGGA
326 AGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTGGA
37000701 AAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCCCA
391 AAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCCCA
*
37000766 ATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTTAA
456 ATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTGAA
37000831 CACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTAGG
521 CACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTAGG
*
37000896 GCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCC-AGATATGGGTAGAGGCCTTATTGGG
586 GCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCCGAG-TATGGGTAAAGGCCTTATTGGG
37000960 CTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGCAGCAAGGCATAGGGTC
650 CTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGCAGCAAGGCATAGGGTC
37001019 GACTTGGATT
Statistics
Matches: 698, Mismatches: 9, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
710 2 0.00
711 696 1.00
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.32
Consensus pattern (711 bp):
ATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAG
CAGCAAGGCGTAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCAAT
TTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATATTA
GATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAATC
GTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGCTT
AGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTGGA
AAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCCCA
ATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTGAA
CACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTAGG
GCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCCGAGTATGGGTAAAGGCCTTATTGGGC
TTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGCAGCAAGGCATAGGGTCAAG
Found at i:37001500 original size:626 final size:626
Alignment explanation
Indices: 37000309--37001538 Score: 2408
Period size: 626 Copynumber: 2.0 Consensus size: 626
37000299 TATAGGGTCA
37000309 AGATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGG
1 AGATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGG
*
37000374 AGCAGCAAGGCGTAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCA
66 AGCAGCAAGGCATAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCA
37000439 ATTTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATAT
131 ATTTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATAT
37000504 TAGATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAA
196 TAGATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAA
37000569 TCGTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGC
261 TCGTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGC
37000634 TTAGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTG
326 TTAGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTG
37000699 GAAAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCC
391 GAAAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCC
37000764 CAATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTT
456 CAATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTT
37000829 AACACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTA
521 AACACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTA
37000894 GGGCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCC
586 GGGCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCC
37000935 AGATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGG
1 AGATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGG
*
37001000 AGCAGCAAGGCATAGGGTCGACTTGGATTAGTTTGGATCATCGGAGTGGCTAGAGCTAGTCATCA
66 AGCAGCAAGGCATAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCA
37001065 ATTTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATAT
131 ATTTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATAT
*
37001130 TAGATGGTTCTCGATTTGGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAA
196 TAGATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAA
*
37001195 TCGTGTAGGAGATCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTATTT-CATAG
261 TCGTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCT-TTTCCATAG
37001259 CTTAGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTT
325 CTTAGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTT
37001324 GGAAAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGC
390 GGAAAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGC
37001389 CCAATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGT
455 CCAATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGT
37001454 TAACACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGT
520 TAACACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGT
37001519 AGGGCCCATTAGGGGTTTTT
585 AGGGCCCATTAGGGGTTTTT
37001539 GGCCCAATAA
Statistics
Matches: 599, Mismatches: 4, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
626 596 0.99
627 3 0.01
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.31
Consensus pattern (626 bp):
AGATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGG
AGCAGCAAGGCATAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCA
ATTTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATAT
TAGATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAA
TCGTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGC
TTAGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTG
GAAAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCC
CAATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTT
AACACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTA
GGGCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCC
Found at i:37001776 original size:20 final size:20
Alignment explanation
Indices: 37001743--37001817 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
37001733 ATACGTGGGA
37001743 TATGATAT--ACATGA-ATG
1 TATGATATGCACATGATATG
37001760 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
*
37001781 TATAATATGCACATGATATG
1 TATGATATGCACATGATATG
*
37001801 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
37001818 GTAATCATAA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 8 0.16
20 40 0.78
21 3 0.06
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.33
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:37001912 original size:26 final size:26
Alignment explanation
Indices: 37001867--37002028 Score: 206
Period size: 26 Copynumber: 6.3 Consensus size: 26
37001857 GAGGAAGTGC
*
37001867 AAAAGGGC-TATGCCCAAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
37001892 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
37001918 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * * *
37001944 AAAAGAGCTTATGCCCTATTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * *
37001970 AAAAGGACTTATGCCCTAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
37001996 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
37002019 AAAAGAGGCT
1 AAAAG-GGCT
37002029 AGGCCTCCAG
Statistics
Matches: 122, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.04
24 8 0.07
25 15 0.12
26 94 0.77
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:37004346 original size:34 final size:36
Alignment explanation
Indices: 37004289--37004359 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
37004279 TAATTTTACA
* *
37004289 TTTTTAATTATGTCTTGATCATTAAGTG-TTTGCATT
1 TTTTTAATTATGACATGA-CATTAAGTGTTTTGCATT
*
37004325 TTTTTAATTATGACATG-CATTATGTGTTTTGCATT
1 TTTTTAATTATGACATGACATTAAGTGTTTTGCATT
37004360 AAATAAAGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
34 8 0.26
35 8 0.26
36 15 0.48
ACGTcount: A:0.23, C:0.08, G:0.14, T:0.55
Consensus pattern (36 bp):
TTTTTAATTATGACATGACATTAAGTGTTTTGCATT
Found at i:37004423 original size:50 final size:52
Alignment explanation
Indices: 37004357--37004479 Score: 151
Period size: 50 Copynumber: 2.4 Consensus size: 52
37004347 TGTGTTTTGC
* * * * *
37004357 ATTAAATAAAGTCATGCATTATATAACTCTCATGTTA-TTCAAGTTTGCATC
1 ATTAAATTAAGACATGCATTATACAACTCTCATGTTAGTTAAAGTTTGCATA
* * *
37004408 A-TAAATTATGACATGCTTTATGCAACTCTCATGTTAGTTAAAGTTTGCATA
1 ATTAAATTAAGACATGCATTATACAACTCTCATGTTAGTTAAAGTTTGCATA
*
37004459 ATTAAATTAAGTCATGCATTA
1 ATTAAATTAAGACATGCATTA
37004480 AGTAACTTAT
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
50 29 0.49
51 14 0.24
52 16 0.27
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (52 bp):
ATTAAATTAAGACATGCATTATACAACTCTCATGTTAGTTAAAGTTTGCATA
Found at i:37005770 original size:27 final size:26
Alignment explanation
Indices: 37005740--37005810 Score: 115
Period size: 27 Copynumber: 2.7 Consensus size: 26
37005730 GCAAAACAGT
37005740 AGGGCAAAATAGTCATTTTACCACATA
1 AGGGCAAAA-AGTCATTTTACCACATA
*
37005767 AGGGCAAAACAATCATTTTACCACATA
1 AGGGCAAAA-AGTCATTTTACCACATA
37005794 AGGGCAAAAAGTCATTT
1 AGGGCAAAAAGTCATTT
37005811 ATCAATTTGG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 7 0.17
27 34 0.83
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.24
Consensus pattern (26 bp):
AGGGCAAAAAGTCATTTTACCACATA
Found at i:37006060 original size:17 final size:18
Alignment explanation
Indices: 37006038--37006072 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
37006028 GATTTACCCA
37006038 TGTGGGGCCCACA-AGCC
1 TGTGGGGCCCACACAGCC
37006055 TGTGGGGCCCACACAGCC
1 TGTGGGGCCCACACAGCC
37006073 CAGTATGGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.17, C:0.37, G:0.34, T:0.11
Consensus pattern (18 bp):
TGTGGGGCCCACACAGCC
Found at i:37008682 original size:67 final size:65
Alignment explanation
Indices: 37008491--37008738 Score: 206
Period size: 67 Copynumber: 3.8 Consensus size: 65
37008481 CATAATTTTG
* * * *
37008491 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGCTAGT--T-TATCTCAT
1 GCTCTCTTGTACACATGGTGTACAC-TAGTACCACACATGCGACCTAGCTAATCATATATCTCAT
37008553 A
65 A
* * * *
37008554 GCTCTCTTGT-CTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCT-A-CATATATC
1 GCTCTCTTGTAC-ACATGGTG---TACA-CTAGTACCACACATGCGACCTAGCTAATCATATATC
*
37008616 CCATA
61 TCATA
*
37008621 GCTCTCTTGT-CTACATGGTGTACACATAGTATCAC-CATGCGACCTAGCTACATCATAATATCT
1 GCTCTCTTGTAC-ACATGGTGTACAC-TAGTACCACACATGCGACCTAGCTA-ATCAT-ATATCT
*
37008684 CGTA
62 CATA
* * * *
37008688 GCTCTCTTGTACACATGATGTGCACTCAGCACCACACATGTGACCTAGCTA
1 GCTCTCTTGTACACATGGTGTACACT-AGTACCACACATGCGACCTAGCTA
37008739 CATACCATCT
Statistics
Matches: 150, Mismatches: 19, Indels: 27
0.77 0.10 0.14
Matches are distributed among these distances:
62 1 0.01
63 33 0.22
64 9 0.06
65 1 0.01
66 27 0.18
67 64 0.43
68 15 0.10
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACTAGTACCACACATGCGACCTAGCTAATCATATATCTCATA
Found at i:37012532 original size:21 final size:20
Alignment explanation
Indices: 37012494--37012532 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
37012484 ACAATCTTGT
*
37012494 ATAACTATCATCAGACATTC
1 ATAACTATCATCAAACATTC
*
37012514 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
37012533 AAAAAATACT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:37018792 original size:19 final size:18
Alignment explanation
Indices: 37018763--37018800 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 18
37018753 AGGGAATTTT
37018763 TATTTTATTTAATTAATA
1 TATTTTATTTAATTAATA
37018781 TATTTATATTTAATTAATA
1 TATTT-TATTTAATTAATA
37018800 T
1 T
37018801 TAATATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTTTATTTAATTAATA
Found at i:37018996 original size:67 final size:67
Alignment explanation
Indices: 37018923--37019066 Score: 252
Period size: 67 Copynumber: 2.1 Consensus size: 67
37018913 AATTTTGAGG
* *
37018923 GTTAATTTTTAAAAATTATGACTAAATTGATATATTATGTAAAAATTTAGGGTTAATATGTTATT
1 GTTAATTTTTAAAAATGATGACTAAATTGATATAATATGTAAAAATTTAGGGTTAATATGTTATT
37018988 AT
66 AT
*
37018990 GTTAATTTTTAAAAATGATGACTAAATTGATATAATATGTAAAAATTTAGGGTTAATTTGTTATT
1 GTTAATTTTTAAAAATGATGACTAAATTGATATAATATGTAAAAATTTAGGGTTAATATGTTATT
37019055 AT
66 AT
*
37019057 GCTAATTTTT
1 GTTAATTTTT
37019067 TAACTACCAT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 73 1.00
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.47
Consensus pattern (67 bp):
GTTAATTTTTAAAAATGATGACTAAATTGATATAATATGTAAAAATTTAGGGTTAATATGTTATT
AT
Found at i:37019413 original size:24 final size:25
Alignment explanation
Indices: 37019364--37019413 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
37019354 CTTTCATAAT
37019364 ATTACTAAATTTACATGTAAAAATA
1 ATTACTAAATTTACATGTAAAAATA
*
37019389 ATTA-TAATATTTA-ATTTAAAAATA
1 ATTACTAA-ATTTACATGTAAAAATA
37019413 A
1 A
37019414 CTAAAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (25 bp):
ATTACTAAATTTACATGTAAAAATA
Found at i:37023318 original size:43 final size:44
Alignment explanation
Indices: 37023234--37023386 Score: 129
Period size: 43 Copynumber: 3.6 Consensus size: 44
37023224 TCTGAGACAT
* * * * *
37023234 CGTGTAAGACCGTGTCTGGGACA-CAGGCCTTGAT-TAAGATTTA
1 CGTGTAAGACCATGTCTGGGACATCAGACATCGATAT-TGATTTA
*
37023277 CGTATAAGACCATGTCTGGGACATCA-ACATCG-TATCTGATTT-
1 CGTGTAAGACCATGTCTGGGACATCAGACATCGATAT-TGATTTA
* * * * *
37023319 TGTGTAAGACCCTGTCTGGGACA-GAGGCATCGATATTGAATTA
1 CGTGTAAGACCATGTCTGGGACATCAGACATCGATATTGATTTA
* *
37023362 CATGTAAGACCACGTCTGGGACATC
1 CGTGTAAGACCATGTCTGGGACATC
37023387 GGCATTGTAC
Statistics
Matches: 86, Mismatches: 18, Indels: 11
0.75 0.16 0.10
Matches are distributed among these distances:
41 1 0.01
42 31 0.36
43 52 0.60
44 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGACATCAGACATCGATATTGATTTA
Found at i:37023350 original size:42 final size:43
Alignment explanation
Indices: 37023281--37023386 Score: 103
Period size: 42 Copynumber: 2.5 Consensus size: 43
37023271 GATTTACGTA
* ***
37023281 TAAGACCATGTCTGGGACATCAACATCG-TATCTG-ATTTTGTG
1 TAAGACCCTGTCTGGGACATCAACATCGATAT-TGAATTACATG
* *
37023323 TAAGACCCTGTCTGGGACA-GAGGCATCGATATTGAATTACATG
1 TAAGACCCTGTCTGGGACATCA-ACATCGATATTGAATTACATG
37023366 TAAGACCAC-GTCTGGGACATC
1 TAAGACC-CTGTCTGGGACATC
37023387 GGCATTGTAC
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.02
42 25 0.48
43 25 0.48
44 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (43 bp):
TAAGACCCTGTCTGGGACATCAACATCGATATTGAATTACATG
Found at i:37030543 original size:34 final size:34
Alignment explanation
Indices: 37030471--37030565 Score: 109
Period size: 34 Copynumber: 2.7 Consensus size: 34
37030461 GTTAGTTCCG
* * *
37030471 GTTTGGGCCTTAGCCCCTTTTTCAGTAAAAGTATCA
1 GTTTGGGCCTTAG--CCTATTTCAGTAAAAGAAGCA
* *
37030507 GTTTGGGCCTGAGCCTATTTCAGTAACAGAAGCA
1 GTTTGGGCCTTAGCCTATTTCAGTAAAAGAAGCA
* *
37030541 GTTTGGGCCTTATCCAATTTCAGTA
1 GTTTGGGCCTTAGCCTATTTCAGTA
37030566 CAGTATGCAA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
34 39 0.76
36 12 0.24
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (34 bp):
GTTTGGGCCTTAGCCTATTTCAGTAAAAGAAGCA
Found at i:37041956 original size:47 final size:47
Alignment explanation
Indices: 37041885--37042023 Score: 217
Period size: 47 Copynumber: 3.0 Consensus size: 47
37041875 GAATTTAAAA
* * * *
37041885 CTTGTTAAA-TTACTCTTAATATTTCCAGATAAGTTACTTAGTTATG
1 CTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTAAG
37041931 CTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTAAG
1 CTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTAAG
* *
37041978 CTTGTTAAATTTGCCCTTATTATTTCTGGATAAGTTACTTAGTTAA
1 CTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTAA
37042024 AGAAAATTTT
Statistics
Matches: 86, Mismatches: 6, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
46 9 0.10
47 77 0.90
ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45
Consensus pattern (47 bp):
CTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTAAG
Found at i:37042867 original size:45 final size:45
Alignment explanation
Indices: 37042803--37043001 Score: 242
Period size: 45 Copynumber: 4.5 Consensus size: 45
37042793 CGCACAGTAT
* *
37042803 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAGATAC
* *
37042848 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAGATAC
** * * * *
37042893 TATTCAAGCCTTTGAGCCTAGAAAGCTATAAAGCCGATGAGATGC
1 TATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAGATAC
* * *
37042938 TATTTGGGCCTTTGAGCCTAGCAAGCTATAATACCGGTGAAATGA-
1 TATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAGAT-AC
*
37042983 TA-TCGGG-CTTCGAGCCTAG
1 TATTCGGGCCTTTGAGCCTAG
37043002 TAGGCGAAAT
Statistics
Matches: 132, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
43 11 0.08
44 4 0.03
45 117 0.89
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAGATAC
Found at i:37054255 original size:40 final size:40
Alignment explanation
Indices: 37054210--37055161 Score: 380
Period size: 40 Copynumber: 23.8 Consensus size: 40
37054200 ATAACCACAA
* * *
37054210 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
37054250 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * *
37054290 GAACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054330 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054370 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054410 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054450 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054490 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054530 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054570 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054610 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054650 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054690 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054730 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054770 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054810 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054850 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054890 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054930 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37054970 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37055010 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37055050 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * * *
37055090 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* ** *
37055130 GCATAAATGCCTTCGGAACTTAGCCCTGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
37055162 CATTCAAATG
Statistics
Matches: 896, Mismatches: 15, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
39 1 0.00
40 891 0.99
41 4 0.00
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:37054317 original size:80 final size:80
Alignment explanation
Indices: 37054254--37055160 Score: 1699
Period size: 80 Copynumber: 11.3 Consensus size: 80
37054244 CAACTCGCAC
* * * * * * * *
37054254 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGAACAAATGCCTTCGGGTCTTAGCCCGG
1 AAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTACCCCGG
37054318 ATAAAATCACTAGCAT
65 ATAAAATCACTAGCAT
37054334 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37054399 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
37054414 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37054479 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
37054494 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37054559 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
37054574 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37054639 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
37054654 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37054719 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
37054734 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37054799 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
37054814 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37054879 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
37054894 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37054959 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
37054974 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37055039 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
37055054 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37055119 TAAAATCACTAGCAT
66 TAAAATCACTAGCAT
* * *
37055134 AAATGCCTTCGGAACTTAGCCCTGATA
1 AAATGCCTTCGGGACTTACCCCGGATA
37055161 TCATTCAAAT
Statistics
Matches: 815, Mismatches: 11, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
80 811 1.00
81 4 0.00
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (80 bp):
AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
TAAAATCACTAGCAT
Found at i:37054418 original size:120 final size:120
Alignment explanation
Indices: 37054254--37055160 Score: 1699
Period size: 120 Copynumber: 7.6 Consensus size: 120
37054244 CAACTCGCAC
* * * * * * * *
37054254 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGAACAAATGCCTTCGGGTCTTAGCCCGG
1 AAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTACCCCGG
37054318 ATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
65 ATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
37054374 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37054439 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
66 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
37054494 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37054559 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
66 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
37054614 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37054679 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
66 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
37054734 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37054799 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
66 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
37054854 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37054919 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
66 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
37054974 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37055039 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
66 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
* * *
37055094 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGAACTTAGCCCTGA
1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
37055159 TA
66 TA
37055161 TCATTCAAAT
Statistics
Matches: 775, Mismatches: 11, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
120 771 0.99
121 4 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (120 bp):
AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA
TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT
Found at i:37065554 original size:29 final size:29
Alignment explanation
Indices: 37065504--37065645 Score: 124
Period size: 29 Copynumber: 4.9 Consensus size: 29
37065494 TTTCTTCAAC
* * * * *
37065504 GATGGTTGAAACCATTCTTTTTAACATTT
1 GATGGTCGAAACCATCCCTTTTCATATTT
37065533 GATGGTCGAAACCATCCCTTTTCATATTT
1 GATGGTCGAAACCATCCCTTTTCATATTT
* * * *
37065562 GATAG-CCAAAGCTATCCCTTTTCATATTC
1 GATGGTCGAAA-CCATCCCTTTTCATATTT
** * *
37065591 GATGGTCGTCACCATCCTTTTTCATAGTT
1 GATGGTCGAAACCATCCCTTTTCATATTT
** *
37065620 GATGGTCGTCACTATCCCTTTTCATA
1 GATGGTCGAAACCATCCCTTTTCATA
37065646 ATCGGTAGCC
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
28 4 0.04
29 86 0.93
30 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (29 bp):
GATGGTCGAAACCATCCCTTTTCATATTT
Found at i:37066476 original size:63 final size:63
Alignment explanation
Indices: 37066377--37066503 Score: 245
Period size: 63 Copynumber: 2.0 Consensus size: 63
37066367 TTGGAGCTTC
37066377 TCCCTTTCTTTATCCATGGTGACATTCAGTTTAAAGAAGAATGAAGAAAAACAAATCATAATT
1 TCCCTTTCTTTATCCATGGTGACATTCAGTTTAAAGAAGAATGAAGAAAAACAAATCATAATT
*
37066440 TCCCTTTCTTTATCCATGGTGACATTCAGTTTAAAGAAGAATGAAGAAAAACAAATCGTAATT
1 TCCCTTTCTTTATCCATGGTGACATTCAGTTTAAAGAAGAATGAAGAAAAACAAATCATAATT
37066503 T
1 T
37066504 TCATCTTTAA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (63 bp):
TCCCTTTCTTTATCCATGGTGACATTCAGTTTAAAGAAGAATGAAGAAAAACAAATCATAATT
Found at i:37069946 original size:25 final size:25
Alignment explanation
Indices: 37069918--37069987 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
37069908 CTCTTTTAAT
*
37069918 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
37069943 AACTGGGGCAAAACCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
37069968 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
37069988 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:37070224 original size:27 final size:27
Alignment explanation
Indices: 37070194--37070406 Score: 226
Period size: 27 Copynumber: 7.9 Consensus size: 27
37070184 GGCAAAATGG
* * *
37070194 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
**
37070221 TAATTCTACCCTACAAGGGTATTTTAA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
37070248 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
37070275 TAATTCTACCCTAC-AGGGTTATTTC-A
1 TAATTCTACCCTACAAGGG-TATTTCGA
37070301 GTAATTCTACCCTAC-AGGGTTATTTC-A
1 -TAATTCTACCCTACAAGGG-TATTTCGA
*
37070328 GTAATTCTACCCTAC-AGGGATATTTCGG
1 -TAATTCTACCCTACAAGGG-TATTTCGA
* *
37070356 TAATTCTACCCTA-TAGAGGTATTTCGG
1 TAATTCTACCCTACAAG-GGTATTTCGA
37070383 TAATTC-ACCCTAC-AGGGTTATTTC
1 TAATTCTACCCTACAAGGG-TATTTC
37070407 AGTAATTTTG
Statistics
Matches: 168, Mismatches: 11, Indels: 15
0.87 0.06 0.08
Matches are distributed among these distances:
25 2 0.01
26 19 0.11
27 145 0.86
28 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:37070306 original size:81 final size:81
Alignment explanation
Indices: 37070221--37070413 Score: 268
Period size: 81 Copynumber: 2.4 Consensus size: 81
37070211 GGTATCTCGA
* *
37070221 TAATTCTACCCTACAAGGG-TATTTTAATATTTCTACCCTACAAGGG-TATTTCGATAATTCTAC
1 TAATTCTACCCTAC-AGGGTTATTTCAATAATTCTACCCTAC-AGGGATATTTCGATAATTCTAC
37070284 CCTACAG-GGTTATTTCAG
64 CCTACAGAGG-TATTTCAG
* *
37070302 TAATTCTACCCTACAGGGTTATTTCAGTAATTCTACCCTACAGGGATATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAGGGTTATTTCAATAATTCTACCCTACAGGGATATTTCGATAATTCTACCC
* *
37070367 TATAGAGGTATTTCGG
66 TACAGAGGTATTTCAG
*
37070383 TAATTC-ACCCTACAGGGTTATTTCAGTAATT
1 TAATTCTACCCTACAGGGTTATTTCAATAATT
37070414 TTGTAAATTG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
80 33 0.32
81 68 0.66
82 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGTTATTTCAATAATTCTACCCTACAGGGATATTTCGATAATTCTACCC
TACAGAGGTATTTCAG
Found at i:37070446 original size:27 final size:27
Alignment explanation
Indices: 37070408--37070545 Score: 213
Period size: 27 Copynumber: 5.1 Consensus size: 27
37070398 GGTTATTTCA
* * *
37070408 GTAATTTTGTAAATTGAAGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
37070435 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
37070462 GTAATTCTATAAATCGAGAGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
37070489 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
37070516 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
37070543 GTA
1 GTA
37070546 CTATAAATCG
Statistics
Matches: 101, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:37070511 original size:81 final size:78
Alignment explanation
Indices: 37070408--37070561 Score: 236
Period size: 81 Copynumber: 1.9 Consensus size: 78
37070398 GGTTATTTCA
* * * *
37070408 GTAATTTTGTAAATTGAAGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTCTGTAAATCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGT-A--CTATA
37070473 AATCGAGAGTAAAATG
63 AATCGAGAGTAAAATG
*
37070489 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTACTATAAAT
1 GTAATTCTGTAAATCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTACTATAAAT
37070554 CGAGAGTA
66 CGAGAGTA
37070562 TTTTGTTAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
78 16 0.24
80 1 0.01
81 51 0.75
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (78 bp):
GTAATTCTGTAAATCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTACTATAAAT
CGAGAGTAAAATG
Found at i:37070589 original size:27 final size:27
Alignment explanation
Indices: 37070559--37070726 Score: 185
Period size: 27 Copynumber: 6.2 Consensus size: 27
37070549 TAAATCGAGA
* * *
37070559 GTATTTTGTTAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* * *
37070586 GTATTTTGGTAAGTTTACAAGCCAGTG
1 GTATTTTGGTAATTTTACAAACCAGGG
37070613 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
37070640 GTATTTTAGTAATTTTACAAACAAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
** * *
37070667 GTATTTTGGTAATTTTACTGATC-GAAG
1 GTATTTTGGTAATTTTACAAACCAG-GG
** *
37070694 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTACAAACCAGGG
37070721 GTATTT
1 GTATTT
37070727 CAATAATTTT
Statistics
Matches: 115, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 114 0.99
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:37070667 original size:81 final size:81
Alignment explanation
Indices: 37070559--37070736 Score: 209
Period size: 81 Copynumber: 2.2 Consensus size: 81
37070549 TAAATCGAGA
* *
37070559 GTATTTT-GTTAATTTCACAAATCAGGGGTATTTTGGTAAGTTTAC-AAGCCAGTGGTATTTTGG
1 GTATTTTAG-TAATTTTACAAATCAGGGGTATTTTGGTAAGTTTACTAAGCCA-AGGTATTTTGG
*
37070622 TAATTTTACAAACCAGGG
64 TAATTTTACAAACCAAGG
* * * *
37070640 GTATTTTAGTAATTTTACAAA-CAAGGGGTATTTTGGTAATTTTACTGATCGAAGGTATTTTGGT
1 GTATTTTAGTAATTTTACAAATC-AGGGGTATTTTGGTAAGTTTACTAAGCCAAGGTATTTTGGT
**
37070704 AATTTTGTAAACCAAGG
65 AATTTTACAAACCAAGG
* *
37070721 GTATTTCAATAATTTT
1 GTATTTTAGTAATTTT
37070737 GTAAACTAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
80 1 0.01
81 78 0.94
82 4 0.05
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
GTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAAGTTTACTAAGCCAAGGTATTTTGGTA
ATTTTACAAACCAAGG
Found at i:37077131 original size:114 final size:118
Alignment explanation
Indices: 37076928--37077152 Score: 300
Period size: 114 Copynumber: 1.9 Consensus size: 118
37076918 GCCAGTCACT
* * * * *
37076928 AGCACTAAGCCTGCGGGACTTTAAGCTCAGATATAATACCAGCACTAGGCCTGCGGGATTTAACC
1 AGCACGAAGCCTGCGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCGAGATTTAACC
37076993 CGGATATAATTCCAGCACGAAGCCTGC-GGGATTTAA-CCCGGATATAATTCC
66 CGGATATAATTCCAGCACGAAGCCTGCTGGGATTTAAGCCCGGATATAATTCC
* *
37077044 AGCACGAAGCCTGCGGGA-TTTAA-CCC-GAATATATTACTAGCACGAAGCCTGCGAGATTTAAC
1 AGCACGAAGCCTGCGGGACTTTAAGCCCAG-ATATAATACCAGCACGAAGCCTGCGAGATTTAAC
* **
37077106 CCGGATATAATTCCAGCA-TATAGCCTGCTGGTCTTTAAGCCCGGATA
65 CCGGATATAATTCCAGCACGA-AGCCTGCTGGGATTTAAGCCCGGATA
37077153 CACATCAAAT
Statistics
Matches: 95, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
113 2 0.02
114 56 0.59
115 12 0.13
116 25 0.26
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.23
Consensus pattern (118 bp):
AGCACGAAGCCTGCGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCGAGATTTAACC
CGGATATAATTCCAGCACGAAGCCTGCTGGGATTTAAGCCCGGATATAATTCC
Found at i:37077133 original size:38 final size:38
Alignment explanation
Indices: 37076928--37077123 Score: 277
Period size: 38 Copynumber: 5.1 Consensus size: 38
37076918 GCCAGTCACT
* * * *
37076928 AGCACTAAGCCTGCGGGACTTTAAGCTCAGATATAATACC
1 AGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAATTCC
* *
37076968 AGCACTAGGCCTGCGGGATTTAACCCGGATATAATTCC
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCC
37077006 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCC
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCC
* *
37077044 AGCACGAAGCCTGCGGGATTTAACCCGAATAT-ATTACT
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATT-CC
*
37077082 AGCACGAAGCCTGCGAGATTTAACCCGGATATAATTCC
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCC
37077120 AGCA
1 AGCA
37077124 TATAGCCTGC
Statistics
Matches: 143, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
37 3 0.02
38 115 0.80
39 8 0.06
40 17 0.12
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCC
Found at i:37081296 original size:80 final size:79
Alignment explanation
Indices: 37081212--37081383 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
37081202 GGACTAAGAT
*
37081212 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
37081276 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
37081292 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
37081357 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
37081371 CCGAAGGCATTTG
1 CCGAAGGCATTTG
37081384 AACGAGGAAC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:37081363 original size:39 final size:39
Alignment explanation
Indices: 37081212--37081416 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
37081202 GGACTAAGAT
*
37081212 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCA-TTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
37081252 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGATACTAAATCCGGGTTAAGTC
* * *
37081292 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
37081332 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC
* *
37081371 CCGAAGGCATT-TGAACGAGGA-ACTATATCC-GGTTAAATC
1 CCGAAGGCATTGTG--CGA-GATACTAAATCCGGGTTAAGTC
37081410 CCGAAGG
1 CCGAAGG
37081417 TACGTGATTT
Statistics
Matches: 142, Mismatches: 17, Indels: 13
0.83 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 51 0.36
40 84 0.59
41 5 0.04
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:37081401 original size:79 final size:80
Alignment explanation
Indices: 37081239--37081416 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 80
37081229 AGATACAAAT
* * * *
37081239 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ** *
37081304 GTGCGAGTTATTAAA
66 GAACGAGGAACTAAA
* * * * *
37081319 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
37081383 GAACGAGGAACTATA
66 GAACGAGGAACTAAA
*
37081398 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37081417 TACGTGATTT
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.17
79 49 0.60
80 18 0.22
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGAACTAAA
Found at i:37089240 original size:80 final size:79
Alignment explanation
Indices: 37089156--37089327 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
37089146 GGACTAAGAT
*
37089156 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
37089220 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
37089236 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
37089301 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
37089315 CCGAAGGCATTTG
1 CCGAAGGCATTTG
37089328 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:37089307 original size:39 final size:39
Alignment explanation
Indices: 37089103--37089325 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
37089093 TTGAATGCTG
* * * * *
37089103 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
37089143 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
37089182 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
37089223 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
37089263 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
37089302 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37089326 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:37089345 original size:79 final size:80
Alignment explanation
Indices: 37089183--37089360 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
37089173 AGATACAAAT
* * * *
37089183 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
37089248 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
37089263 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
37089327 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
37089342 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37089361 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:37091016 original size:40 final size:40
Alignment explanation
Indices: 37090871--37091016 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 40
37090861 GCTCCTCGTT
* *
37090871 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
37090911 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
37090951 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
37090992 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37091017 CATCATTCAA
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:37103227 original size:19 final size:19
Alignment explanation
Indices: 37103205--37103261 Score: 51
Period size: 26 Copynumber: 2.6 Consensus size: 19
37103195 TGCTAGGATG
37103205 ATTTATTTGATTAAATAAT
1 ATTTATTTGATTAAATAAT
37103224 ATTTATGATTTATTTGATTAAATAAT
1 A-TT-T-A--T--TTGATTAAATAAT
37103250 ATTTATTTGATT
1 ATTTATTTGATT
37103262 CATGCTTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 14
0.69 0.00 0.31
Matches are distributed among these distances:
19 7 0.23
20 2 0.06
21 2 0.06
22 1 0.03
23 1 0.03
24 2 0.06
25 2 0.06
26 14 0.45
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (19 bp):
ATTTATTTGATTAAATAAT
Found at i:37103231 original size:26 final size:26
Alignment explanation
Indices: 37103202--37103255 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
37103192 TTATGCTAGG
37103202 ATGATTTATTTGATTAAATAATATTT
1 ATGATTTATTTGATTAAATAATATTT
37103228 ATGATTTATTTGATTAAATAATATTT
1 ATGATTTATTTGATTAAATAATATTT
37103254 AT
1 AT
37103256 TTGATTCATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (26 bp):
ATGATTTATTTGATTAAATAATATTT
Found at i:37104931 original size:11 final size:12
Alignment explanation
Indices: 37104904--37104962 Score: 50
Period size: 11 Copynumber: 5.0 Consensus size: 12
37104894 TAGACTTACA
37104904 ATACATTTAATC
1 ATACATTTAATC
*
37104916 ATACATTTCA-C
1 ATACATTTAATC
*
37104927 ATACATTCAATC
1 ATACATTTAATC
**
37104939 ATTACAAATAATC
1 A-TACATTTAATC
*
37104952 AT-CATTCAATC
1 ATACATTTAATC
37104963 TCAATCAATT
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
11 15 0.42
12 12 0.33
13 9 0.25
ACGTcount: A:0.42, C:0.22, G:0.00, T:0.36
Consensus pattern (12 bp):
ATACATTTAATC
Found at i:37106305 original size:23 final size:23
Alignment explanation
Indices: 37106264--37106307 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
37106254 AACCCCTAAT
*
37106264 ATGCATAATTGTTTGATTTATGA
1 ATGCATAATTGATTGATTTATGA
37106287 ATGCATAA-TGATTGCATTTAT
1 ATGCATAATTGATTG-ATTTAT
37106308 TATTAGCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.45
Consensus pattern (23 bp):
ATGCATAATTGATTGATTTATGA
Found at i:37132888 original size:44 final size:41
Alignment explanation
Indices: 37132834--37132987 Score: 159
Period size: 43 Copynumber: 3.6 Consensus size: 41
37132824 CCAATATGTT
37132834 ATTTCGTGTAAGACCACGTCTGGGACATTAGCATCA-ATTTGAG
1 ATTTCGTGTAAGACCACGTCTGGGACATT-GCATCATATTT--G
* * *
37132877 ATTTACGTGTAAGAGCATGTCTGGGACATCGGCATCATATTTG
1 ATTT-CGTGTAAGACCACGTCTGGGACAT-TGCATCATATTTG
*
37132920 ATTTTGTGTAAGACC-CTGTCTGGGACAGTTGCATCGATATTTG
1 ATTTCGTGTAAGACCAC-GTCTGGGACA-TTGCATC-ATATTTG
* * *
37132963 ATTACATGTAAGACCACGTTTGGGA
1 ATTTCGTGTAAGACCACGTCTGGGA
37132988 TGTTGGCATT
Statistics
Matches: 93, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
42 24 0.26
43 36 0.39
44 29 0.31
45 4 0.04
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (41 bp):
ATTTCGTGTAAGACCACGTCTGGGACATTGCATCATATTTG
Found at i:37134390 original size:21 final size:21
Alignment explanation
Indices: 37134366--37134406 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
37134356 CTAAGAAAGG
37134366 GAATTTGAAATAATGTTTGAT
1 GAATTTGAAATAATGTTTGAT
37134387 GAATTTGAAATAATGTTTGA
1 GAATTTGAAATAATGTTTGA
37134407 CTATGAGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (21 bp):
GAATTTGAAATAATGTTTGAT
Found at i:37140554 original size:21 final size:21
Alignment explanation
Indices: 37140530--37140588 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
37140520 ACAACATCGA
** *
37140530 GGTTTTGTGACATGATGCAAT
1 GGTTTTGTGACATGACACAAC
37140551 GGTTTTGT-ATCATGACACAAC
1 GGTTTTGTGA-CATGACACAAC
*
37140572 GGTTTTGTGTCATGACA
1 GGTTTTGTGACATGACA
37140589 TCGAGATAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.03
21 31 0.97
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37
Consensus pattern (21 bp):
GGTTTTGTGACATGACACAAC
Found at i:37146471 original size:29 final size:29
Alignment explanation
Indices: 37146405--37146500 Score: 149
Period size: 29 Copynumber: 3.3 Consensus size: 29
37146395 AAGTCTACAT
* * *
37146405 ACATGCATATGGCCCACTAGGCAC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
37146433 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
37146462 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
37146491 ACATTCATAT
1 ACATTCATAT
37146501 TCATGCTTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
28 20 0.32
29 42 0.68
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:37149863 original size:8 final size:8
Alignment explanation
Indices: 37149846--37149890 Score: 63
Period size: 8 Copynumber: 5.6 Consensus size: 8
37149836 ATGAATCAGC
37149846 AAAAGCCA
1 AAAAGCCA
*
37149854 AAATGCCA
1 AAAAGCCA
37149862 AAAAGCCA
1 AAAAGCCA
*
37149870 AAAAGCTA
1 AAAAGCCA
*
37149878 AAATGCCA
1 AAAAGCCA
37149886 AAAAG
1 AAAAG
37149891 TCGAAAGTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.60, C:0.20, G:0.13, T:0.07
Consensus pattern (8 bp):
AAAAGCCA
Found at i:37150035 original size:9 final size:9
Alignment explanation
Indices: 37149999--37150037 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
37149989 GTTGAGAATT
37149999 GGCCAAATG
1 GGCCAAATG
37150008 GGCCGAAATG
1 GGCC-AAATG
*
37150018 GGCTAAATG
1 GGCCAAATG
*
37150027 GGCCTAATG
1 GGCCAAATG
37150036 GG
1 GG
37150038 TTGTTGGGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.28, C:0.18, G:0.38, T:0.15
Consensus pattern (9 bp):
GGCCAAATG
Found at i:37150145 original size:29 final size:29
Alignment explanation
Indices: 37150113--37150225 Score: 138
Period size: 29 Copynumber: 3.9 Consensus size: 29
37150103 GCATGAATAT
**
37150113 AATATGATTTGGGCCTAATGGGCCATAAG
1 AATATGAACTGGGCCTAATGGGCCATAAG
37150142 AATATGAACTGGGCCTAATGGGCCATAAG
1 AATATGAACTGGGCCTAATGGGCCATAAG
* * **
37150171 AATATGAACTCGGCCAAATGGGCCATTTG
1 AATATGAACTGGGCCTAATGGGCCATAAG
* * *
37150200 AATAAG-ATTGGGCCTAGTGGGCCATA
1 AATATGAACTGGGCCTAATGGGCCATA
37150226 TGCATGTATG
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 15 0.21
29 57 0.79
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (29 bp):
AATATGAACTGGGCCTAATGGGCCATAAG
Found at i:37167375 original size:68 final size:67
Alignment explanation
Indices: 37167303--37167452 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
37167293 CATCATGTGT
* * * *
37167303 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
37167365 ATGTAG
62 ATGTAG
** * *
37167371 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
37167436 AG
66 AG
37167438 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
37167453 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:37167408 original size:64 final size:64
Alignment explanation
Indices: 37167327--37167510 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
37167317 AGACATTATG
* *
37167327 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
37167391 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
37167456 AA
63 AA
* * * *
37167458 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
37167511 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:37171319 original size:30 final size:30
Alignment explanation
Indices: 37171234--37171321 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 30
37171224 TAAGCTAAAA
* *
37171234 TGAGCTAAGCTTTAGC-CCTTAAGCTAAAGT
1 TGAGCTAAGATTTAGCTCC-TAAGCTGAAGT
*
37171264 TGAGCTGAGATTATA-CTCCTAAGCTGAAGT
1 TGAGCTAAGATT-TAGCTCCTAAGCTGAAGT
* * *
37171294 TGAGCTAAGGTTTAGCTCGTGAGCTGAA
1 TGAGCTAAGATTTAGCTCCTAAGCTGAA
37171322 TATAAGCTAG
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
29 2 0.04
30 42 0.88
31 4 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCCTAAGCTGAAGT
Found at i:37175926 original size:13 final size:13
Alignment explanation
Indices: 37175908--37175932 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37175898 TAACCTACAA
37175908 AATTAAATAACAT
1 AATTAAATAACAT
37175921 AATTAAATAACA
1 AATTAAATAACA
37175933 CACAACTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AATTAAATAACAT
Found at i:37176186 original size:10 final size:10
Alignment explanation
Indices: 37176153--37176208 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
37176143 AAAAAGGAAT
*
37176153 GAGCTGAAAC
1 GAGCTCAAAC
37176163 GAGCT-AAATTC
1 GAGCTCAAA--C
37176174 GAGCTCAAAC
1 GAGCTCAAAC
*
37176184 GAGCTAAAAC
1 GAGCTCAAAC
* *
37176194 AAGCTCAAAT
1 GAGCTCAAAC
37176204 GAGCT
1 GAGCT
37176209 GATGGGAACT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
9 3 0.08
10 26 0.68
11 6 0.16
12 3 0.08
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.16
Consensus pattern (10 bp):
GAGCTCAAAC
Found at i:37176200 original size:20 final size:21
Alignment explanation
Indices: 37176154--37176208 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
37176144 AAAAGGAATG
* * *
37176154 AGCTGAAACGAGCTAAATTCG
1 AGCTCAAACGAGCTAAATACA
37176175 AGCTCAAACGAGCTAAA-ACA
1 AGCTCAAACGAGCTAAATACA
*
37176195 AGCTCAAATGAGCT
1 AGCTCAAACGAGCT
37176209 GATGGGAACT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.42, C:0.22, G:0.20, T:0.16
Consensus pattern (21 bp):
AGCTCAAACGAGCTAAATACA
Found at i:37177572 original size:14 final size:14
Alignment explanation
Indices: 37177564--37177603 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
37177554 CGAACGGAAT
37177564 GGTAGGAACAAAAG
1 GGTAGGAACAAAAG
37177578 GGTAGGAAC-AAAG
1 GGTAGGAACAAAAG
*
37177591 GGATATGAACAAA
1 GG-TAGGAACAAA
37177604 TTGGTCGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 6 0.26
14 15 0.65
15 2 0.09
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:37179726 original size:5 final size:5
Alignment explanation
Indices: 37179716--37179772 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
37179706 CTCTTGCCTC
*
37179716 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
37179763 TCTTT TCTTT
1 TCTTT TCTTT
37179773 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:37179756 original size:15 final size:14
Alignment explanation
Indices: 37179716--37179772 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
37179706 CTCTTGCCTC
*
37179716 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
37179731 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
37179746 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
37179763 TCTTTTCTTT
1 TCTTTTCTTT
37179773 GTTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:37179773 original size:21 final size:21
Alignment explanation
Indices: 37179716--37179783 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
37179706 CTCTTGCCTC
* *
37179716 TCTTTTCTTTT-TATTTCATTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
37179737 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
37179758 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
37179778 CTCTTT
1 -TCTTT
37179784 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.18
21 27 0.69
22 5 0.13
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:37180731 original size:11 final size:11
Alignment explanation
Indices: 37180717--37180748 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
37180707 TTTTCAAAAT
37180717 TTTTTTTTGAA
1 TTTTTTTTGAA
37180728 TTTTTTTTGAA
1 TTTTTTTTGAA
37180739 TTTTTTTTGA
1 TTTTTTTTGA
37180749 CTTGTATAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:37182454 original size:30 final size:30
Alignment explanation
Indices: 37182420--37182516 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
37182410 TAAACTAAAA
37182420 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
37182450 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
37182480 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
37182510 TGAGCTA
1 TGAGCTA
37182517 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Done.