Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: At_chr10 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 95480121 ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31 Warning! 2980117 characters in sequence are not A, C, G, or T File 112 of 284 Found at i:36850848 original size:27 final size:25 Alignment explanation
Indices: 36850796--36850848 Score: 61 Period size: 27 Copynumber: 2.0 Consensus size: 25 36850786 AAACTCTTCT ** 36850796 AAAAGAAACTCAAGAGAAATTCTTG 1 AAAAGAAACTCAAGAGAAATAATTG * 36850821 AAAAGAAAACTCAAAGAGAAGTAATTG 1 AAAAG-AAACTC-AAGAGAAATAATTG 36850848 A 1 A 36850849 TTGCTTTGGG Statistics Matches: 23, Mismatches: 3, Indels: 2 0.82 0.11 0.07 Matches are distributed among these distances: 25 5 0.22 26 6 0.26 27 12 0.52 ACGTcount: A:0.57, C:0.09, G:0.17, T:0.17 Consensus pattern (25 bp): AAAAGAAACTCAAGAGAAATAATTG Found at i:36857135 original size:210 final size:210 Alignment explanation
Indices: 36856773--36857192 Score: 831 Period size: 210 Copynumber: 2.0 Consensus size: 210 36856763 CGCATCATGC 36856773 GCGGTCAGCCAATCCAAACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGC 1 GCGGTCAGCCAATCCAAACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGC 36856838 CGGAAAACAAAAACCTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAAC 66 CGGAAAACAAAAACCTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAAC * 36856903 GACCCAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTTAACAGGTAGAGTCTTACTGGAT 131 GACACAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTTAACAGGTAGAGTCTTACTGGAT 36856968 GCTAAGGTTTCACAT 196 GCTAAGGTTTCACAT 36856983 GCGGTCAGCCAATCCAAACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGC 1 GCGGTCAGCCAATCCAAACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGC 36857048 CGGAAAACAAAAACCTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAAC 66 CGGAAAACAAAAACCTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAAC 36857113 GACACAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTTAACAGGTAGAGTCTTACTGGAT 131 GACACAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTTAACAGGTAGAGTCTTACTGGAT 36857178 GCTAAGGTTTCACAT 196 GCTAAGGTTTCACAT 36857193 ACATATGAAT Statistics Matches: 209, Mismatches: 1, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 210 209 1.00 ACGTcount: A:0.36, C:0.25, G:0.19, T:0.20 Consensus pattern (210 bp): GCGGTCAGCCAATCCAAACCAAGAATAACATCAAATTCATCAAACGGCAAAAGCATCAAGTCCGC CGGAAAACAAAAACCTCGAATTACTAGGGGACATCTCTTACACACTTTGTCGACAAGCACGTAAC GACACAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTTAACAGGTAGAGTCTTACTGGAT GCTAAGGTTTCACAT Found at i:36860283 original size:29 final size:29 Alignment explanation
Indices: 36860220--36860287 Score: 93 Period size: 29 Copynumber: 2.3 Consensus size: 29 36860210 TAATCAACCG 36860220 CGCACACTTAGTGCCATGCACTTTAAACT 1 CGCACACTTAGTGCCATGCACTTTAAACT * ** 36860249 CACACACTTAGTGCCATGCA-TTTCAAGTT 1 CGCACACTTAGTGCCATGCACTTT-AAACT 36860278 CGCACACTTA 1 CGCACACTTA 36860288 CCTTTTCCAC Statistics Matches: 34, Mismatches: 4, Indels: 2 0.85 0.10 0.05 Matches are distributed among these distances: 28 3 0.09 29 31 0.91 ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28 Consensus pattern (29 bp): CGCACACTTAGTGCCATGCACTTTAAACT Found at i:36860399 original size:174 final size:174 Alignment explanation
Indices: 36860109--36860436 Score: 611 Period size: 174 Copynumber: 1.9 Consensus size: 174 36860099 AACTCAAGGT * * * 36860109 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA 1 ACTTACCTTTTCCACTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA 36860174 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC 66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC 36860239 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC 131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC 36860283 ACTTACCTTTTCCACTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA 1 ACTTACCTTTTCCACTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA * 36860348 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT 66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC * 36860413 ACTTTAAACTCGCACACTTAGTGC 131 ACTTTAAACTCACACACTTAGTGC 36860437 TGTACAATTT Statistics Matches: 149, Mismatches: 5, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 174 149 1.00 ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30 Consensus pattern (174 bp): ACTTACCTTTTCCACTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC Found at i:36860428 original size:29 final size:29 Alignment explanation
Indices: 36860394--36860467 Score: 100 Period size: 29 Copynumber: 2.6 Consensus size: 29 36860384 TAATCAACCG 36860394 CGCACACTTAGTGCCATGTAC-TTTAAAC 1 CGCACACTTAGTGCCATGTACATTTAAAC 36860422 TCGCACACTTAGTG-C-TGTACAATTTAAAC 1 -CGCACACTTAGTGCCATGTAC-ATTTAAAC 36860451 CTGCACACTTAGTGCCA 1 C-GCACACTTAGTGCCA 36860468 ATCTCATGAC Statistics Matches: 40, Mismatches: 0, Indels: 8 0.83 0.00 0.17 Matches are distributed among these distances: 27 5 0.12 28 2 0.05 29 32 0.80 30 1 0.03 ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28 Consensus pattern (29 bp): CGCACACTTAGTGCCATGTACATTTAAAC Found at i:36863401 original size:57 final size:57 Alignment explanation
Indices: 36863304--36863418 Score: 212 Period size: 57 Copynumber: 2.0 Consensus size: 57 36863294 AAAATGCGAA 36863304 AGTCGATCGTAAAGTTTGTTCAAGTCGTGGATTTGACTTAGGGCTGTAGATGTTCGG 1 AGTCGATCGTAAAGTTTGTTCAAGTCGTGGATTTGACTTAGGGCTGTAGATGTTCGG * * 36863361 AGTCTATCTTAAAGTTTGTTCAAGTCGTGGATTTGACTTAGGGCTGTAGATGTTCGG 1 AGTCGATCGTAAAGTTTGTTCAAGTCGTGGATTTGACTTAGGGCTGTAGATGTTCGG 36863418 A 1 A 36863419 AAGAAACTTG Statistics Matches: 56, Mismatches: 2, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 57 56 1.00 ACGTcount: A:0.22, C:0.12, G:0.30, T:0.37 Consensus pattern (57 bp): AGTCGATCGTAAAGTTTGTTCAAGTCGTGGATTTGACTTAGGGCTGTAGATGTTCGG Found at i:36877341 original size:27 final size:27 Alignment explanation
Indices: 36877311--36877486 Score: 154 Period size: 27 Copynumber: 6.9 Consensus size: 27 36877301 ATTACCAAAG * 36877311 TACCCTCGATTTATAGAATTACTGTTT 1 TACCCTCGATTTATAAAATTACTGTTT * * 36877338 TACCCTTGATTTATAAAATTACTATTT 1 TACCCTCGATTTATAAAATTACTGTTT * **** 36877365 TACCCTCGATTTACAAAATTACTAAAA 1 TACCCTCGATTTATAAAATTACTGTTT * 36877392 TA-CC-C------T-AAATTACCGTTT 1 TACCCTCGATTTATAAAATTACTGTTT * 36877410 TACCCTCGATTTATAGAATTACTGTTT 1 TACCCTCGATTTATAAAATTACTGTTT * * * * 36877437 TAGCCTTGATTTACAGAATTACTGTTT 1 TACCCTCGATTTATAAAATTACTGTTT * 36877464 TACCCTCGATTTACAAAATTACT 1 TACCCTCGATTTATAAAATTACT 36877487 AAAATACCCT Statistics Matches: 118, Mismatches: 22, Indels: 18 0.75 0.14 0.11 Matches are distributed among these distances: 18 9 0.08 19 2 0.02 20 1 0.01 25 1 0.01 26 3 0.03 27 102 0.86 ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41 Consensus pattern (27 bp): TACCCTCGATTTATAAAATTACTGTTT Found at i:36877396 original size:54 final size:54 Alignment explanation
Indices: 36877266--36877514 Score: 156 Period size: 54 Copynumber: 4.8 Consensus size: 54 36877256 AATACTTTAG * ** * * *** 36877266 TTTACCAAATTACTGAAATACCCTCAAATTGTAAAATTACCAAAGTACCCTCGA 1 TTTACAAAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGA * * *** * 36877320 TTTATAGAATTACTGTTTTACCCTTGATTTATAAAATTACTATTTTACCCTCGA 1 TTTACAAAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGA * * 36877374 TTTACAAAATTACTAAAATACCC--------T-AAATTACCGTTTTACCCTCGA 1 TTTACAAAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGA * * *** * * * ** 36877419 TTTATAGAATTACTGTTTTAGCCTTGATTTACAGAATTACTGTTTTACCCTCGA 1 TTTACAAAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGA * * * * * 36877473 TTTACAAAATTACTAAAATACCCTCGGTTTACAGAATTACCA 1 TTTACAAAATTACTGAAATACCCTTGATTTATAAAATTACCA 36877515 AAATACCCTC Statistics Matches: 143, Mismatches: 43, Indels: 18 0.70 0.21 0.09 Matches are distributed among these distances: 45 35 0.24 46 1 0.01 54 107 0.75 ACGTcount: A:0.35, C:0.20, G:0.08, T:0.37 Consensus pattern (54 bp): TTTACAAAATTACTGAAATACCCTTGATTTATAAAATTACCATTTTACCCTCGA Found at i:36877470 original size:99 final size:99 Alignment explanation
Indices: 36877311--36877496 Score: 336 Period size: 99 Copynumber: 1.9 Consensus size: 99 36877301 ATTACCAAAG * 36877311 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTATAAAATTACTATTTTACCCTCGATT 1 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTATTTTACCCTCGATT 36877376 TACAAAATTACTAAAATACCCTAAATTACCGTTT 66 TACAAAATTACTAAAATACCCTAAATTACCGTTT * * * 36877410 TACCCTCGATTTATAGAATTACTGTTTTAGCCTTGATTTACAGAATTACTGTTTTACCCTCGATT 1 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTATTTTACCCTCGATT 36877475 TACAAAATTACTAAAATACCCT 66 TACAAAATTACTAAAATACCCT 36877497 CGGTTTACAG Statistics Matches: 83, Mismatches: 4, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 99 83 1.00 ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40 Consensus pattern (99 bp): TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTATTTTACCCTCGATT TACAAAATTACTAAAATACCCTAAATTACCGTTT Found at i:36877494 original size:27 final size:27 Alignment explanation
Indices: 36877464--36877738 Score: 236 Period size: 27 Copynumber: 10.2 Consensus size: 27 36877454 ATTACTGTTT ** * 36877464 TACCCTCGATTTACAAAATTACTAAAA 1 TACCCTCGATTTGTAAAATTACCAAAA * ** * 36877491 TACCCTCGGTTTACAGAATTACCAAAA 1 TACCCTCGATTTGTAAAATTACCAAAA *** 36877518 TACCCTCGACCAGTAAAATTACCAAAA 1 TACCCTCGATTTGTAAAATTACCAAAA * * * 36877545 TACCCTAG-TTTGTAAAATTGCTAAAA 1 TACCCTCGATTTGTAAAATTACCAAAA * * * 36877571 TACCCTTGGTTTGTAAAATTA-TAGAAA 1 TACCCTCGATTTGTAAAATTACCA-AAA * 36877598 TACCCTCAATTTGTAAAATTACCAAAA 1 TACCCTCGATTTGTAAAATTACCAAAA * 36877625 TACCC-CTAGTTTGTAAAATTACCAAAA 1 TACCCTCGA-TTTGTAAAATTACCAAAA * * * * 36877652 TACAACT-GGTTTGTGAAATTACCGAAA 1 TAC-CCTCGATTTGTAAAATTACCAAAA * 36877679 TACCCTCAATTTGTAAAATTACCAAAA 1 TACCCTCGATTTGTAAAATTACCAAAA ** * * 36877706 TACCC-CTGATTTACAAAGTTACAAAAA 1 TACCCTC-GATTTGTAAAATTACCAAAA 36877733 TACCCT 1 TACCCT 36877739 TGACTTTCTA Statistics Matches: 201, Mismatches: 38, Indels: 17 0.79 0.15 0.07 Matches are distributed among these distances: 26 27 0.13 27 172 0.86 28 2 0.01 ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29 Consensus pattern (27 bp): TACCCTCGATTTGTAAAATTACCAAAA Found at i:36877782 original size:27 final size:27 Alignment explanation
Indices: 36877749--36877800 Score: 79 Period size: 27 Copynumber: 1.9 Consensus size: 27 36877739 TGACTTTCTA 36877749 AAAATTA-TGGAAATACCATTGGTTTAC 1 AAAATTACT-GAAATACCATTGGTTTAC * 36877776 AAAATTACTGAAATACCCTTGGTTT 1 AAAATTACTGAAATACCATTGGTTT 36877801 GTAGATTTAC Statistics Matches: 23, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 27 22 0.96 28 1 0.04 ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35 Consensus pattern (27 bp): AAAATTACTGAAATACCATTGGTTTAC Found at i:36877945 original size:27 final size:27 Alignment explanation
Indices: 36877854--36877945 Score: 116 Period size: 27 Copynumber: 3.4 Consensus size: 27 36877844 ACCCCTATTA * 36877854 GGTAAAAAGACCGTAAAGCCCCTGTAG 1 GGTAAAATGACCGTAAAGCCCCTGTAG * 36877881 GGTAAAGA-GACTGTAAAGCCCCTGTAG 1 GGTAAA-ATGACCGTAAAGCCCCTGTAG * * 36877908 GGTAAAGTGACCGTAATA-CCCCTGTAT 1 GGTAAAATGACCGTAA-AGCCCCTGTAG 36877935 GGTAAAATGAC 1 GGTAAAATGAC 36877946 GAATATGCCC Statistics Matches: 57, Mismatches: 5, Indels: 6 0.84 0.07 0.09 Matches are distributed among these distances: 27 55 0.96 28 2 0.04 ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20 Consensus pattern (27 bp): GGTAAAATGACCGTAAAGCCCCTGTAG Found at i:36878700 original size:16 final size:16 Alignment explanation
Indices: 36878679--36878709 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 36878669 CAAATATGGG 36878679 CATGACATTCTGCATA 1 CATGACATTCTGCATA * 36878695 CATGACATTTTGCAT 1 CATGACATTCTGCAT 36878710 TGGGTTCGGA Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 16 14 1.00 ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35 Consensus pattern (16 bp): CATGACATTCTGCATA Found at i:36878772 original size:26 final size:26 Alignment explanation
Indices: 36878743--36878866 Score: 178 Period size: 26 Copynumber: 4.8 Consensus size: 26 36878733 GAGGAAGTGC 36878743 AAAAGGGCTTATGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTACCG * * ** 36878769 AAAAGGGCTTAGGCCCTAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTACCG 36878795 AAAAGGGCTTATGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTACCG ** 36878821 AAAAGGGCTTATGCCCCAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTACCG * 36878847 AAAAGGG-TTTTGCCCCAGTT 1 AAAAGGGCTTATGCCCCAGTT 36878867 ATTAAAAGAG Statistics Matches: 87, Mismatches: 11, Indels: 1 0.88 0.11 0.01 Matches are distributed among these distances: 25 12 0.14 26 75 0.86 ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27 Consensus pattern (26 bp): AAAAGGGCTTATGCCCCAGTTTACCG Found at i:36878821 original size:52 final size:52 Alignment explanation
Indices: 36878743--36878866 Score: 214 Period size: 52 Copynumber: 2.4 Consensus size: 52 36878733 GAGGAAGTGC * 36878743 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTAGGCCCTAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTAGGCCCCAGTTTATTG * 36878795 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTAGGCCCCAGTTTATTG * 36878847 AAAAGGG-TTTTGCCCCAGTT 1 AAAAGGGCTTATGCCCCAGTT 36878867 ATTAAAAGAG Statistics Matches: 69, Mismatches: 3, Indels: 1 0.95 0.04 0.01 Matches are distributed among these distances: 51 12 0.17 52 57 0.83 ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27 Consensus pattern (52 bp): AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTAGGCCCCAGTTTATTG Found at i:36879120 original size:31 final size:31 Alignment explanation
Indices: 36879085--36879148 Score: 110 Period size: 31 Copynumber: 2.1 Consensus size: 31 36879075 CGTTTATAGT * 36879085 AAAGGCTTTGGCCCAATGATATGATTTATGA 1 AAAGGCTTCGGCCCAATGATATGATTTATGA * 36879116 AAAGGCTTCGGCCCAGTGATATGATTTATGA 1 AAAGGCTTCGGCCCAATGATATGATTTATGA 36879147 AA 1 AA 36879149 TGGTTTCAGC Statistics Matches: 31, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 31 31 1.00 ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30 Consensus pattern (31 bp): AAAGGCTTCGGCCCAATGATATGATTTATGA Found at i:36879161 original size:31 final size:31 Alignment explanation
Indices: 36879085--36879163 Score: 104 Period size: 31 Copynumber: 2.5 Consensus size: 31 36879075 CGTTTATAGT ** * 36879085 AAAGGCTTTGGCCCAATGATATGATTTATGA 1 AAAGGCTTCAGCCCAGTGATATGATTTATGA * 36879116 AAAGGCTTCGGCCCAGTGATATGATTTATGA 1 AAAGGCTTCAGCCCAGTGATATGATTTATGA * * 36879147 AATGGTTTCAGCCCAGT 1 AAAGGCTTCAGCCCAGT 36879164 AACCGTTAAA Statistics Matches: 43, Mismatches: 5, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 31 43 1.00 ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30 Consensus pattern (31 bp): AAAGGCTTCAGCCCAGTGATATGATTTATGA Found at i:36881456 original size:27 final size:27 Alignment explanation
Indices: 36881398--36881684 Score: 186 Period size: 27 Copynumber: 10.7 Consensus size: 27 36881388 TTAGTTTACC ** * * * 36881398 AAATTACTGAAATACCCTCAAATTGTA 1 AAATTACCAAAATACCCTCGATTTATA * 36881425 AAATTACCAAAGTACCCTCGATTTATA 1 AAATTACCAAAATACCCTCGATTTATA * ***** * 36881452 GAATTACTGTTTTACCCTTGATTTATA 1 AAATTACCAAAATACCCTCGATTTATA * *** * 36881479 AAATTACTATTTTACCCTCGATTTACA 1 AAATTACCAAAATACCCTCGATTTATA * * * 36881506 AAATTACTAAAATACCCTCGGTTTACA 1 AAATTACCAAAATACCCTCGATTTATA * * * 36881533 GAATTACCAAAATACCTTCGA-TCAGTA 1 AAATTACCAAAATACCCTCGATTTA-TA * * 36881560 AAATTACCAAAATACCCTAG-TTTGTA 1 AAATTACCAAAATACCCTCGATTTATA * * * * * 36881586 AAATTGCTAAAATACCCTTGGTTTGTA 1 AAATTACCAAAATACCCTCGATTTATA * ** * 36881613 AAATTACAAAAATACCCTTAATTTGTA 1 AAATTACCAAAATACCCTCGATTTATA * 36881640 AAATTACCAAAATACCC-CTGATTTACA 1 AAATTACCAAAATACCCTC-GATTTATA * 36881667 AAGTTA-CAGAAATACCCT 1 AAATTACCA-AAATACCCT 36881685 TGACTTTCTA Statistics Matches: 209, Mismatches: 45, Indels: 11 0.79 0.17 0.04 Matches are distributed among these distances: 26 23 0.11 27 186 0.89 ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32 Consensus pattern (27 bp): AAATTACCAAAATACCCTCGATTTATA Found at i:36881522 original size:54 final size:54 Alignment explanation
Indices: 36881392--36881767 Score: 247 Period size: 54 Copynumber: 6.9 Consensus size: 54 36881382 AATACTTTAG * * ** * * 36881392 TTTACCAAATTACTGAAATACCCTCAAATTGTAAAATTACCAAAGTACCCTCGA 1 TTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCGA * * **** * * *** 36881446 TTTATAGAATTACTGTTTTACCCTTGATTTATAAAATTACTATTTTACCCTCGA 1 TTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCGA * * ** * * 36881500 TTTACAAAATTACTAAAATACCCTCGGTTTACAGAATTACCAAAATACCTTCGA 1 TTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCGA * * * * * * * * 36881554 -TCAGTAAAATTACCAAAATACCCTAG-TTTGTAAAATTGCTAAAATACCCTTGG 1 TTTA-CAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCGA ** * * 36881607 TTTGTAAAATTACAAAAATACCCTTAATTTGTAAAATTACCAAAATACCC-CTGA 1 TTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTC-GA * * *** * * * 36881661 TTTACAAAGTTAC-AGAAATACCCTTGACTTTCTAAAAATTATGGAAATACCATTGG 1 TTTACAAAATTACTA-AAATACCCTTGA-TTTGT-AAAATTACCAAAATACCCTCGA * * * * * 36881717 TTTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAACACCCT 1 TTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCT 36881768 TGTAGGATGA Statistics Matches: 241, Mismatches: 72, Indels: 18 0.73 0.22 0.05 Matches are distributed among these distances: 53 41 0.17 54 154 0.64 55 8 0.03 56 38 0.16 ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33 Consensus pattern (54 bp): TTTACAAAATTACTAAAATACCCTTGATTTGTAAAATTACCAAAATACCCTCGA Found at i:36881609 original size:80 final size:80 Alignment explanation
Indices: 36881505--36881656 Score: 207 Period size: 80 Copynumber: 1.9 Consensus size: 80 36881495 CTCGATTTAC * * * 36881505 AAAATTACTAAAATACCCTCGGTTTACAGAATTACCAAAATA-CCTTCGATCAGTAAAATTACCA 1 AAAATTACTAAAATACCCTCGGTTTACAAAATTACAAAAATACCCTT-AATCAGTAAAATTACCA 36881569 AAATACCCTAGTTTGT 65 AAATACCCTAGTTTGT * * ** ** 36881585 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACAAAAATACCCTTAATTTGTAAAATTACCAA 1 AAAATTACTAAAATACCCTCGGTTTACAAAATTACAAAAATACCCTTAATCAGTAAAATTACCAA 36881650 AATACCC 66 AATACCC 36881657 CTGATTTACA Statistics Matches: 62, Mismatches: 9, Indels: 2 0.85 0.12 0.03 Matches are distributed among these distances: 80 58 0.94 81 4 0.06 ACGTcount: A:0.43, C:0.20, G:0.08, T:0.30 Consensus pattern (80 bp): AAAATTACTAAAATACCCTCGGTTTACAAAATTACAAAAATACCCTTAATCAGTAAAATTACCAA AATACCCTAGTTTGT Found at i:36881734 original size:27 final size:27 Alignment explanation
Indices: 36881464--36881746 Score: 171 Period size: 27 Copynumber: 10.4 Consensus size: 27 36881454 ATTACTGTTT * * *** 36881464 TACCCTTGATTTATAAAATTACTATTT 1 TACCCTTGGTTTACAAAATTACTAAAA * * 36881491 TACCCTCGATTTACAAAATTACTAAAA 1 TACCCTTGGTTTACAAAATTACTAAAA * * * 36881518 TACCCTCGGTTTACAGAATTACCAAAA 1 TACCCTTGGTTTACAAAATTACTAAAA * * * * * 36881545 TA-CCTTCGATCAGTAAAATTACCAAAA 1 TACCCTTGGTTTA-CAAAATTACTAAAA * ** * 36881572 TACCC-TAGTTTGTAAAATTGCTAAAA 1 TACCCTTGGTTTACAAAATTACTAAAA ** * 36881598 TACCCTTGGTTTGTAAAATTACAAAAA 1 TACCCTTGGTTTACAAAATTACTAAAA ** ** * 36881625 TACCCTTAATTTGTAAAATTACCAAAA 1 TACCCTTGGTTTACAAAATTACTAAAA * * * 36881652 TACCCCTGATTTACAAAGTTAC-AGAAA 1 TACCCTTGGTTTACAAAATTACTA-AAA * * 36881679 TACCCTTGACTTT-CTAAAAATTA-TGGAAA 1 TACCCTTG-GTTTAC--AAAATTACT-AAAA * * 36881708 TACCATTGGTTTACAAAATTACTGAAA 1 TACCCTTGGTTTACAAAATTACTAAAA 36881735 TACCCTTGGTTT 1 TACCCTTGGTTT 36881747 GTAGATTTAC Statistics Matches: 207, Mismatches: 38, Indels: 22 0.78 0.14 0.08 Matches are distributed among these distances: 26 24 0.12 27 157 0.76 28 9 0.04 29 17 0.08 ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33 Consensus pattern (27 bp): TACCCTTGGTTTACAAAATTACTAAAA Found at i:36881823 original size:27 final size:27 Alignment explanation
Indices: 36881791--36881887 Score: 97 Period size: 27 Copynumber: 3.6 Consensus size: 27 36881781 GACTAAAATA * 36881791 CCCCTATTAGGTAAAAAGACCGTAAAG 1 CCCCTATAAGGTAAAAAGACCGTAAAG * * 36881818 CCCCTATAAGGTAAAGAGATCGTAAAG 1 CCCCTATAAGGTAAAAAGACCGTAAAG * * ** 36881845 CCCCTGTAGGGTAAAGTGACCGTAATA- 1 CCCCTATAAGGTAAAAAGACCGTAA-AG * * 36881872 CCCCTGTATGGTAAAA 1 CCCCTATAAGGTAAAA 36881888 TGATGAATAT Statistics Matches: 60, Mismatches: 9, Indels: 2 0.85 0.13 0.03 Matches are distributed among these distances: 27 59 0.98 28 1 0.02 ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21 Consensus pattern (27 bp): CCCCTATAAGGTAAAAAGACCGTAAAG Found at i:36882719 original size:26 final size:26 Alignment explanation
Indices: 36882690--36882877 Score: 258 Period size: 26 Copynumber: 7.3 Consensus size: 26 36882680 GAGGAAGTGC 36882690 AAAAGGGCTTATGCCCCAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTATTG * ** 36882716 AAAAGGGCTTATGCCCCAATTTAACG 1 AAAAGGGCTTATGCCCCAGTTTATTG 36882742 AAAAGGGCTTATGCCCCAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTATTG * ** 36882768 AAAAGGGCTTATACCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTATTG 36882794 AAAAGGGCTTATGCCCCAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTATTG ** 36882820 AAAAGGGCTT-TGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTATTG * 36882845 AAAAGGG-TTTTGCCCCAG-TTATT- 1 AAAAGGGCTTATGCCCCAGTTTATTG 36882868 AAAAGAGGCT 1 AAAAG-GGCT 36882878 AGGCCTCCAG Statistics Matches: 143, Mismatches: 16, Indels: 7 0.86 0.10 0.04 Matches are distributed among these distances: 23 5 0.03 24 7 0.05 25 29 0.20 26 102 0.71 ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27 Consensus pattern (26 bp): AAAAGGGCTTATGCCCCAGTTTATTG Found at i:36882768 original size:52 final size:52 Alignment explanation
Indices: 36882690--36882877 Score: 303 Period size: 52 Copynumber: 3.7 Consensus size: 52 36882680 GAGGAAGTGC * * 36882690 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAATTTAACG 1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG * 36882742 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATACCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG 36882794 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG * 36882845 AAAAGGG-TTTTGCCCCAG-TTATT-AAAAGAGGCT 1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT 36882878 AGGCCTCCAG Statistics Matches: 130, Mismatches: 5, Indels: 5 0.93 0.04 0.04 Matches are distributed among these distances: 48 5 0.04 49 9 0.07 50 10 0.08 51 21 0.16 52 85 0.65 ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27 Consensus pattern (52 bp): AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG Found at i:36883119 original size:30 final size:31 Alignment explanation
Indices: 36883083--36883152 Score: 106 Period size: 30 Copynumber: 2.3 Consensus size: 31 36883073 CGTTTACAAT * 36883083 AAAGGCTTCAGCCCAATGATATGA-TTATGA 1 AAAGGCTTCAGCCCAATGATATGATTTATAA * * 36883113 AAAGGCTTCGGCCCAGTGATATGATTTATAA 1 AAAGGCTTCAGCCCAATGATATGATTTATAA 36883144 AAAGGCTTC 1 AAAGGCTTC 36883153 TTCCCAGTAA Statistics Matches: 36, Mismatches: 3, Indels: 1 0.90 0.08 0.03 Matches are distributed among these distances: 30 22 0.61 31 14 0.39 ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27 Consensus pattern (31 bp): AAAGGCTTCAGCCCAATGATATGATTTATAA Found at i:36892275 original size:40 final size:39 Alignment explanation
Indices: 36892191--36892375 Score: 194 Period size: 40 Copynumber: 4.6 Consensus size: 39 36892181 TTGAATGATG * * * * 36892191 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA 1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA * * * 36892231 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT 1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA * 36892271 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA * * 36892310 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA 1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA * * 36892351 -CTGGGCTATGTCCCGAAGGCATTTG 1 TCCGGGCTAAGT-CCGAAGGCATTTG 36892376 AACTAGTAGC Statistics Matches: 123, Mismatches: 18, Indels: 8 0.83 0.12 0.05 Matches are distributed among these distances: 39 35 0.28 40 78 0.63 41 10 0.08 ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25 Consensus pattern (39 bp): TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA Found at i:36892327 original size:79 final size:81 Alignment explanation
Indices: 36892191--36892375 Score: 218 Period size: 79 Copynumber: 2.3 Consensus size: 81 36892181 TTGAATGATG * * 36892191 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT 36892255 TGTGCGAGATACTA-A 66 TGTGCGAGATACTATA * * * ** 36892270 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA 1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA * 36892332 ATTGTGCGAGTTACTATA 64 ATTGTGCGAGATACTATA * * * 36892350 ACTGGGCTATGTCCCGAAGGCATTTG 1 TCCGGGCTAAGTCCCGAAGGCATTTG 36892376 AACTAGTAGC Statistics Matches: 90, Mismatches: 11, Indels: 8 0.83 0.10 0.07 Matches are distributed among these distances: 78 1 0.01 79 56 0.62 80 33 0.37 ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25 Consensus pattern (81 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT TGTGCGAGATACTATA Found at i:36892397 original size:79 final size:79 Alignment explanation
Indices: 36892244--36892408 Score: 183 Period size: 79 Copynumber: 2.1 Consensus size: 79 36892234 GGACTAAGAT * * ** 36892244 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA 1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA * 36892309 ATCCGGGTTAAGTC 66 ATCCGGGTTAAATC * * * * 36892323 CCGAAGGCAATTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCATTTGAACTAG-TAGC 1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C * * 36892386 TATATCC-GGTTAAATT 63 TAAATCCGGGTTAAATC 36892402 CCGAAGG 1 CCGAAGG 36892409 TACGTGATTT Statistics Matches: 72, Mismatches: 11, Indels: 6 0.81 0.12 0.07 Matches are distributed among these distances: 78 2 0.03 79 46 0.64 80 24 0.33 ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26 Consensus pattern (79 bp): CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA ATCCGGGTTAAATC Found at i:36901295 original size:28 final size:29 Alignment explanation
Indices: 36901263--36901377 Score: 112 Period size: 29 Copynumber: 4.0 Consensus size: 29 36901253 TACCTGTATG * * 36901263 TGGCCCATTAAGCCC-AATCATATTCATA 1 TGGCCCATTAGGCCCAAATCACATTCATA * * * 36901291 TGGCCCATGAGGCCCAAATTACCTGT-ATA 1 TGGCCCATTAGGCCCAAATCACAT-TCATA * 36901320 TGGCCCAATT-GGCCCAAATCACATTTATA 1 TGGCCC-ATTAGGCCCAAATCACATTCATA * * 36901349 TGGCCCGTTAGGCCC-AGTCACATTCATA 1 TGGCCCATTAGGCCCAAATCACATTCATA 36901377 T 1 T 36901378 TCATGCTCAC Statistics Matches: 71, Mismatches: 11, Indels: 10 0.77 0.12 0.11 Matches are distributed among these distances: 28 28 0.39 29 40 0.56 30 3 0.04 ACGTcount: A:0.28, C:0.29, G:0.17, T:0.27 Consensus pattern (29 bp): TGGCCCATTAGGCCCAAATCACATTCATA Found at i:36905874 original size:18 final size:19 Alignment explanation
Indices: 36905851--36905890 Score: 57 Period size: 18 Copynumber: 2.2 Consensus size: 19 36905841 GCCTCTCGAT 36905851 GGTGGCTG-ACCACC-CCTC 1 GGTGGCTGTA-CACCACCTC 36905869 GGTGGCTGTACACCACCTC 1 GGTGGCTGTACACCACCTC 36905888 GGT 1 GGT 36905891 CCACAACTGG Statistics Matches: 20, Mismatches: 0, Indels: 3 0.87 0.00 0.13 Matches are distributed among these distances: 18 12 0.60 19 8 0.40 ACGTcount: A:0.12, C:0.38, G:0.30, T:0.20 Consensus pattern (19 bp): GGTGGCTGTACACCACCTC Found at i:36908526 original size:29 final size:28 Alignment explanation
Indices: 36908469--36908554 Score: 109 Period size: 28 Copynumber: 3.0 Consensus size: 28 36908459 TTCCTGTATG * * * 36908469 TGGCCCATTAAGTCCAATCATATTCATA 1 TGGCCCATTAGGCCCAATCACATTCATA * 36908497 TGGCCCATTAGGCCCAAATCACATTTATA 1 TGGCCCATTAGGCCC-AATCACATTCATA * * 36908526 TGGCCCGTTAGGCCCAGTCACATTCATA 1 TGGCCCATTAGGCCCAATCACATTCATA 36908554 T 1 T 36908555 TCATGCTCAC Statistics Matches: 50, Mismatches: 7, Indels: 2 0.85 0.12 0.03 Matches are distributed among these distances: 28 25 0.50 29 25 0.50 ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29 Consensus pattern (28 bp): TGGCCCATTAGGCCCAATCACATTCATA Found at i:36912510 original size:50 final size:49 Alignment explanation
Indices: 36912384--36912559 Score: 226 Period size: 50 Copynumber: 3.5 Consensus size: 49 36912374 TGAGGTCGCA * * * 36912384 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAA-TT-GGTCACG * * ** 36912435 TGTGTAGTACTAAGTGCAGGTTACTACGTGTATCTGATGGTTAGGTCACG 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAATT-GGTCACG * * * * 36912485 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTGGTCGCA 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAATTGGTCACG 36912534 TGTGTAGTACTAAGTGCAGGCTACTA 1 TGTGTAGTACTAAGTGCAGGCTACTA 36912560 TGCGTACCAG Statistics Matches: 109, Mismatches: 16, Indels: 2 0.86 0.13 0.02 Matches are distributed among these distances: 49 31 0.28 50 44 0.40 51 34 0.31 ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31 Consensus pattern (49 bp): TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCTGATAATTGGTCACG Found at i:36912567 original size:49 final size:50 Alignment explanation
Indices: 36912376--36912572 Score: 225 Period size: 50 Copynumber: 3.9 Consensus size: 50 36912366 ATCTATTGTG * * 36912376 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT 1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCTGATAA-TT * * * * * * ** 36912427 CGATCACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTATCTGATGGTT 1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCTGATAATT * ** * 36912477 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT 1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCTGATAATT * * * 36912527 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA 1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCTGATA 36912573 GCTTTGGCTA Statistics Matches: 122, Mismatches: 24, Indels: 2 0.82 0.16 0.01 Matches are distributed among these distances: 49 40 0.33 50 44 0.36 51 38 0.31 ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29 Consensus pattern (50 bp): AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCTGATAATT Found at i:36924089 original size:13 final size:13 Alignment explanation
Indices: 36924071--36924096 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 36924061 ATATTATAAT 36924071 TATTTTATGTTAA 1 TATTTTATGTTAA 36924084 TATTTTATGTTAA 1 TATTTTATGTTAA 36924097 AAATAAAATA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62 Consensus pattern (13 bp): TATTTTATGTTAA Found at i:36924593 original size:94 final size:94 Alignment explanation
Indices: 36924457--36924644 Score: 367 Period size: 94 Copynumber: 2.0 Consensus size: 94 36924447 AATGAATAAT 36924457 AATAAATCATCTAGTGAATTGGTGTAATTGCCGAATTTGAACTAGGAAGTTATTGAGAAATGTTT 1 AATAAATCATCTAGTGAATTGGTGTAATTGCCGAATTTGAACTAGGAAGTTATTGAGAAATGTTT * 36924522 GTACTTTAAGTGATAGAATAGAGTGAATG 66 GTACTTTAAGTGATAAAATAGAGTGAATG 36924551 AATAAATCATCTAGTGAATTGGTGTAATTGCCGAATTTGAACTAGGAAGTTATTGAGAAATGTTT 1 AATAAATCATCTAGTGAATTGGTGTAATTGCCGAATTTGAACTAGGAAGTTATTGAGAAATGTTT 36924616 GTACTTTAAGTGATAAAATAGAGTGAATG 66 GTACTTTAAGTGATAAAATAGAGTGAATG 36924645 CTTGGAATGT Statistics Matches: 93, Mismatches: 1, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 94 93 1.00 ACGTcount: A:0.37, C:0.06, G:0.23, T:0.34 Consensus pattern (94 bp): AATAAATCATCTAGTGAATTGGTGTAATTGCCGAATTTGAACTAGGAAGTTATTGAGAAATGTTT GTACTTTAAGTGATAAAATAGAGTGAATG Found at i:36925657 original size:40 final size:40 Alignment explanation
Indices: 36925548--36925724 Score: 261 Period size: 40 Copynumber: 4.5 Consensus size: 40 36925538 CGGATGATAA * 36925548 CCGGACTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT * 36925588 CCGGGCTAA-TCCCAAAGGCATTTGTGCTAGTGACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT * * * 36925627 CCAGGCTAAGTCCCGAAGGCATCTGTGCTAGTTACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT * 36925667 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATAT * 36925707 CC-GGCTAAATCCCGAAGG 1 CCGGGCTAAGTCCCGAAGG 36925725 TACTTGGGTT Statistics Matches: 124, Mismatches: 11, Indels: 5 0.89 0.08 0.04 Matches are distributed among these distances: 39 52 0.42 40 71 0.57 41 1 0.01 ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26 Consensus pattern (40 bp): CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT Found at i:36925713 original size:79 final size:78 Alignment explanation
Indices: 36925548--36925724 Score: 266 Period size: 79 Copynumber: 2.2 Consensus size: 78 36925538 CGGATGATAA * 36925548 CCGGACTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAATCCCAAAGGCATTTGT 1 CCGG-CTAAGTCCCGAAGGCATCTGTGCTAGTGACTATATCCGGGCTAATCCCAAAGGCATTTGT * 36925613 GCTAGTGACTATAT 65 GCGAGTGACTATAT * * 36925627 CCAGGCTAAGTCCCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG 1 CC-GGCTAAGTCCCGAAGGCATCTGTGCTAGTGACTATATCCGGGCTAA-TCCCAAAGGCATTTG 36925692 TGCGAGTTG-CTATAT 64 TGCGAG-TGACTATAT * 36925707 CCGGCTAAATCCCGAAGG 1 CCGGCTAAGTCCCGAAGG 36925725 TACTTGGGTT Statistics Matches: 90, Mismatches: 5, Indels: 6 0.89 0.05 0.06 Matches are distributed among these distances: 79 59 0.66 80 29 0.32 81 2 0.02 ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26 Consensus pattern (78 bp): CCGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACTATATCCGGGCTAATCCCAAAGGCATTTGTG CGAGTGACTATAT Found at i:36929777 original size:25 final size:25 Alignment explanation
Indices: 36929743--36929790 Score: 96 Period size: 25 Copynumber: 1.9 Consensus size: 25 36929733 CGGGTATTCG 36929743 AGTTTGAATGGACAGGAAAATGTTA 1 AGTTTGAATGGACAGGAAAATGTTA 36929768 AGTTTGAATGGACAGGAAAATGT 1 AGTTTGAATGGACAGGAAAATGT 36929791 CAGAAAAGTT Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 25 23 1.00 ACGTcount: A:0.40, C:0.04, G:0.29, T:0.27 Consensus pattern (25 bp): AGTTTGAATGGACAGGAAAATGTTA Found at i:36940928 original size:40 final size:40 Alignment explanation
Indices: 36940815--36941069 Score: 337 Period size: 40 Copynumber: 6.5 Consensus size: 40 36940805 TGGATGATAA * * * 36940815 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT 36940855 CCGGGC-AAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * * 36940893 CCGGGCTAAGTCCCGAAGGTATTGGTGCGAGTTACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * 36940933 CCGGGCTAAGTCCCGAAGGCATTTGTGGGAAG-TACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT 36940973 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT * 36941014 -CGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT ** 36941052 CC-GGCTAAACCCCGAAGG 1 CCGGGCTAAGTCCCGAAGG 36941070 TACTTGGTTG Statistics Matches: 195, Mismatches: 12, Indels: 18 0.87 0.05 0.08 Matches are distributed among these distances: 37 1 0.01 38 37 0.19 39 36 0.18 40 117 0.60 41 4 0.02 ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24 Consensus pattern (40 bp): CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT Found at i:36944557 original size:40 final size:40 Alignment explanation
Indices: 36944490--36944661 Score: 215 Period size: 40 Copynumber: 4.3 Consensus size: 40 36944480 ACCCAAGTAT * * 36944490 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC 1 CTTCGGG-TCTTAGCCCGGATATAGCAACTAGCACAAATGC * * 36944529 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGG 1 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC * * 36944569 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC 1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTAGCACAAATGC * * * 36944609 CTTCGGGACATAGCCCGGATATAGCAACTAGCACGAATGC 1 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC * 36944649 CTTCGGATCTTAG 1 CTTCGGGTCTTAG 36944662 TCTGGTTATC Statistics Matches: 115, Mismatches: 14, Indels: 7 0.85 0.10 0.05 Matches are distributed among these distances: 38 1 0.01 39 13 0.11 40 99 0.86 41 2 0.02 ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24 Consensus pattern (40 bp): CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC Found at i:36947771 original size:40 final size:40 Alignment explanation
Indices: 36947716--36947921 Score: 317 Period size: 40 Copynumber: 5.2 Consensus size: 40 36947706 GGACTAAGAT * 36947716 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAGGTC 1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC * 36947756 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC 1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC * 36947796 CCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTC 1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC * * * 36947836 CCGAAGGCATCTGTGCTAGTTACTATATCCGAGCTAAGTC 1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC * * 36947876 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC 1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC 36947915 CCGAAGG 1 CCGAAGG 36947922 TACTTGGGTT Statistics Matches: 152, Mismatches: 13, Indels: 3 0.90 0.08 0.02 Matches are distributed among these distances: 39 14 0.09 40 137 0.90 41 1 0.01 ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27 Consensus pattern (40 bp): CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC Found at i:36955148 original size:40 final size:40 Alignment explanation
Indices: 36955075--36955150 Score: 109 Period size: 40 Copynumber: 1.9 Consensus size: 40 36955065 GCATTTCTGT * * 36955075 TACTGTTACTGAAATGGGCTAAGGCTCACACTGATATTGA 1 TACTGATACTGAAATGGGCTAAGGCCCACACTGATATTGA * 36955115 TACTGATACTGTAATGGGCTAAGGCCCTA-ACTGATA 1 TACTGATACTGAAATGGGCTAAGGCCC-ACACTGATA 36955151 CTGGACTGTC Statistics Matches: 32, Mismatches: 3, Indels: 2 0.86 0.08 0.05 Matches are distributed among these distances: 40 31 0.97 41 1 0.03 ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29 Consensus pattern (40 bp): TACTGATACTGAAATGGGCTAAGGCCCACACTGATATTGA Found at i:36957062 original size:78 final size:78 Alignment explanation
Indices: 36956933--36957119 Score: 374 Period size: 78 Copynumber: 2.4 Consensus size: 78 36956923 TTTGCAGAAC 36956933 AAATCAGATCAAACAACAGAAACAGATTAAGGGGTGAGTTTGGAAAACTCAGTGTGTAAAATAAC 1 AAATCAGATCAAACAACAGAAACAGATTAAGGGGTGAGTTTGGAAAACTCAGTGTGTAAAATAAC 36956998 CCAACTATAGTCT 66 CCAACTATAGTCT 36957011 AAATCAGATCAAACAACAGAAACAGATTAAGGGGTGAGTTTGGAAAACTCAGTGTGTAAAATAAC 1 AAATCAGATCAAACAACAGAAACAGATTAAGGGGTGAGTTTGGAAAACTCAGTGTGTAAAATAAC 36957076 CCAACTATAGTCT 66 CCAACTATAGTCT 36957089 AAATCAGATCAAACAACAGAAACAGATTAAG 1 AAATCAGATCAAACAACAGAAACAGATTAAG 36957120 TTGGGCCTTA Statistics Matches: 109, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 78 109 1.00 ACGTcount: A:0.46, C:0.16, G:0.18, T:0.20 Consensus pattern (78 bp): AAATCAGATCAAACAACAGAAACAGATTAAGGGGTGAGTTTGGAAAACTCAGTGTGTAAAATAAC CCAACTATAGTCT Found at i:36957352 original size:27 final size:27 Alignment explanation
Indices: 36957312--36957426 Score: 144 Period size: 27 Copynumber: 4.3 Consensus size: 27 36957302 AGCATGGCTG * * 36957312 CTAGAACAGATA-TTGTGACAAAGTCA 1 CTAGAACAGATATTTGTGGCAAAGCCA 36957338 CTAGATACAGATA-TTGTGGCAAAGCCA 1 CTAGA-ACAGATATTTGTGGCAAAGCCA * * 36957365 CCAGAACAGATATTTGTGGCATAGCCA 1 CTAGAACAGATATTTGTGGCAAAGCCA * * 36957392 CCAGAAACAGATATTTGTGGCATAGCCA 1 CTAG-AACAGATATTTGTGGCAAAGCCA 36957420 CTAGAAC 1 CTAGAAC 36957427 GCTTCCTCCA Statistics Matches: 81, Mismatches: 5, Indels: 5 0.89 0.05 0.05 Matches are distributed among these distances: 26 12 0.15 27 43 0.53 28 26 0.32 ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22 Consensus pattern (27 bp): CTAGAACAGATATTTGTGGCAAAGCCA Found at i:36965842 original size:39 final size:40 Alignment explanation
Indices: 36965797--36965928 Score: 176 Period size: 40 Copynumber: 3.3 Consensus size: 40 36965787 GCTCCTCGTT * * * 36965797 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA 1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA ** 36965837 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA 1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA * * * 36965876 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA 1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA * 36965916 CAAAGGCCTTCGG 1 CAAATGCCTTCGG 36965929 ATCTTAGTCC Statistics Matches: 80, Mismatches: 11, Indels: 2 0.86 0.12 0.02 Matches are distributed among these distances: 39 34 0.43 40 46 0.57 ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23 Consensus pattern (40 bp): CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA Found at i:36967690 original size:27 final size:27 Alignment explanation
Indices: 36967652--36967706 Score: 110 Period size: 27 Copynumber: 2.0 Consensus size: 27 36967642 CCCAAAATTT 36967652 TTACAAATTCATCAAAGGGTAATAACA 1 TTACAAATTCATCAAAGGGTAATAACA 36967679 TTACAAATTCATCAAAGGGTAATAACA 1 TTACAAATTCATCAAAGGGTAATAACA 36967706 T 1 T 36967707 CAAATCAGTC Statistics Matches: 28, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 27 28 1.00 ACGTcount: A:0.47, C:0.15, G:0.11, T:0.27 Consensus pattern (27 bp): TTACAAATTCATCAAAGGGTAATAACA Found at i:36970968 original size:43 final size:45 Alignment explanation
Indices: 36970848--36971003 Score: 128 Period size: 43 Copynumber: 3.6 Consensus size: 45 36970838 AGCTCGTACA ** * 36970848 ATGCCAACATCCCAGACGTGGTCTTACAT-GT-AATCAAATATCG 1 ATGCCAATGTCCCAGACATGGTCTTACATCGTAAATCAAATATCG * * * * * 36970891 ATGCCACTGTCCGAGATAGGGTCTTACA-C-AAAATCAAATA-CG 1 ATGCCAATGTCCCAGACATGGTCTTACATCGTAAATCAAATATCG * * * * 36970933 ATGCCAATGTCCCAGACATAGTCTTA-ATCGTAAATCTAA-GTCA 1 ATGCCAATGTCCCAGACATGGTCTTACATCGTAAATCAAATATCG * * * 36970976 ATGCCTATATCCCAGATATGGTCTTACA 1 ATGCCAATGTCCCAGACATGGTCTTACA 36971004 CGAATACACA Statistics Matches: 86, Mismatches: 21, Indels: 11 0.73 0.18 0.09 Matches are distributed among these distances: 41 1 0.01 42 24 0.28 43 60 0.70 44 1 0.01 ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26 Consensus pattern (45 bp): ATGCCAATGTCCCAGACATGGTCTTACATCGTAAATCAAATATCG Found at i:36973720 original size:22 final size:21 Alignment explanation
Indices: 36973684--36973724 Score: 64 Period size: 22 Copynumber: 1.9 Consensus size: 21 36973674 GAGCCGAAGC * 36973684 TTTCCTGAAGTTTCCTAGCAA 1 TTTCCTGAAGCTTCCTAGCAA 36973705 TTTCCTTGAAGCTTCCTAGC 1 TTTCC-TGAAGCTTCCTAGC 36973725 TAGCTGAAAT Statistics Matches: 18, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 21 5 0.28 22 13 0.72 ACGTcount: A:0.20, C:0.27, G:0.15, T:0.39 Consensus pattern (21 bp): TTTCCTGAAGCTTCCTAGCAA Found at i:36980824 original size:10 final size:10 Alignment explanation
Indices: 36980811--36980843 Score: 57 Period size: 10 Copynumber: 3.3 Consensus size: 10 36980801 AAATTAAGTA 36980811 GGAGCTGAAT 1 GGAGCTGAAT 36980821 GGAGCTGAAT 1 GGAGCTGAAT * 36980831 GGAGCTGGAT 1 GGAGCTGAAT 36980841 GGA 1 GGA 36980844 CTAGGCTAGG Statistics Matches: 22, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 10 22 1.00 ACGTcount: A:0.27, C:0.09, G:0.45, T:0.18 Consensus pattern (10 bp): GGAGCTGAAT Found at i:36985840 original size:10 final size:10 Alignment explanation
Indices: 36985827--36985859 Score: 57 Period size: 10 Copynumber: 3.3 Consensus size: 10 36985817 AAATTAAGTA 36985827 GGAGCTGAAT 1 GGAGCTGAAT 36985837 GGAGCTGAAT 1 GGAGCTGAAT * 36985847 GGAGCTGGAT 1 GGAGCTGAAT 36985857 GGA 1 GGA 36985860 CTAGGCTAGG Statistics Matches: 22, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 10 22 1.00 ACGTcount: A:0.27, C:0.09, G:0.45, T:0.18 Consensus pattern (10 bp): GGAGCTGAAT Found at i:36990029 original size:21 final size:20 Alignment explanation
Indices: 36990005--36990059 Score: 53 Period size: 17 Copynumber: 2.9 Consensus size: 20 36989995 TGATAATGAG * 36990005 AAAAAATGAGCGAAAAATAAA 1 AAAAAATGAGAGAAAAA-AAA * * 36990026 AAAAATTGAGAG---AAGAA 1 AAAAAATGAGAGAAAAAAAA 36990043 AAAAAATGAGAGAAAAA 1 AAAAAATGAGAGAAAAA 36990060 GAAATTGAAA Statistics Matches: 27, Mismatches: 4, Indels: 7 0.71 0.11 0.18 Matches are distributed among these distances: 17 13 0.48 18 2 0.07 20 2 0.07 21 10 0.37 ACGTcount: A:0.71, C:0.02, G:0.18, T:0.09 Consensus pattern (20 bp): AAAAAATGAGAGAAAAAAAA Found at i:36990044 original size:17 final size:16 Alignment explanation
Indices: 36990023--36990067 Score: 63 Period size: 17 Copynumber: 2.8 Consensus size: 16 36990013 AGCGAAAAAT 36990023 AAAAAAAATTGAGAGA 1 AAAAAAAATTGAGAGA * 36990039 AGAAAAAAAATGAGAGA 1 A-AAAAAAATTGAGAGA * 36990056 AAAAGAAATTGA 1 AAAAAAAATTGA 36990068 AAAAAAAGAG Statistics Matches: 25, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 16 10 0.40 17 15 0.60 ACGTcount: A:0.69, C:0.00, G:0.20, T:0.11 Consensus pattern (16 bp): AAAAAAAATTGAGAGA Found at i:36992373 original size:9 final size:10 Alignment explanation
Indices: 36992361--36992413 Score: 58 Period size: 11 Copynumber: 5.4 Consensus size: 10 36992351 TATGATGTAC 36992361 ATGA-ATGAT 1 ATGATATGAT 36992370 ATGATATGCAT 1 ATGATATG-AT 36992381 ATGATATG-T 1 ATGATATGAT * 36992390 ATGATATGCAC 1 ATGATATG-AT 36992401 ATGATATG-T 1 ATGATATGAT 36992410 ATGA 1 ATGA 36992414 AATGCACATG Statistics Matches: 38, Mismatches: 2, Indels: 8 0.79 0.04 0.17 Matches are distributed among these distances: 9 17 0.45 10 3 0.08 11 18 0.47 ACGTcount: A:0.38, C:0.06, G:0.21, T:0.36 Consensus pattern (10 bp): ATGATATGAT Found at i:36992384 original size:11 final size:11 Alignment explanation
Indices: 36992368--36992425 Score: 61 Period size: 11 Copynumber: 5.6 Consensus size: 11 36992358 TACATGAATG 36992368 ATATGATATGC 1 ATATGATATGC 36992379 ATATGATATG- 1 ATATGATATGC 36992389 -TATGATATGC 1 ATATGATATGC * 36992399 ACATGATATG- 1 ATATGATATGC * 36992409 -TATGAAATGC 1 ATATGATATGC * 36992419 ACATGAT 1 ATATGAT 36992426 GTAATCATAA Statistics Matches: 38, Mismatches: 5, Indels: 8 0.75 0.10 0.16 Matches are distributed among these distances: 9 16 0.42 11 22 0.58 ACGTcount: A:0.38, C:0.09, G:0.19, T:0.34 Consensus pattern (11 bp): ATATGATATGC Found at i:36992392 original size:20 final size:20 Alignment explanation
Indices: 36992359--36992425 Score: 100 Period size: 20 Copynumber: 3.4 Consensus size: 20 36992349 GATATGATGT 36992359 ACATGA-ATGATATGATATGC 1 ACATGATATG-TATGATATGC * 36992379 ATATGATATGTATGATATGC 1 ACATGATATGTATGATATGC * 36992399 ACATGATATGTATGAAATGC 1 ACATGATATGTATGATATGC 36992419 ACATGAT 1 ACATGAT 36992426 GTAATCATAA Statistics Matches: 43, Mismatches: 3, Indels: 2 0.90 0.06 0.04 Matches are distributed among these distances: 20 40 0.93 21 3 0.07 ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33 Consensus pattern (20 bp): ACATGATATGTATGATATGC Found at i:36992522 original size:26 final size:26 Alignment explanation
Indices: 36992475--36992558 Score: 113 Period size: 26 Copynumber: 3.3 Consensus size: 26 36992465 GAGGAAGTGC 36992475 AAAAGGGCTTA-GCCCCAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTATTG ** 36992500 AAAAGGGCTTATGCCCCAGTTTACCG 1 AAAAGGGCTTATGCCCCAGTTTATTG 36992526 AAAAGGGCTT-TGCCCCAG-TTATT- 1 AAAAGGGCTTATGCCCCAGTTTATTG 36992549 AAAAGAGGCT 1 AAAAG-GGCT 36992559 AGGCCTCCAA Statistics Matches: 53, Mismatches: 4, Indels: 5 0.85 0.06 0.08 Matches are distributed among these distances: 23 5 0.09 24 7 0.13 25 19 0.36 26 22 0.42 ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25 Consensus pattern (26 bp): AAAAGGGCTTATGCCCCAGTTTATTG Found at i:36992804 original size:31 final size:31 Alignment explanation
Indices: 36992769--36992832 Score: 101 Period size: 31 Copynumber: 2.1 Consensus size: 31 36992759 CCGTTAAACG * 36992769 AAAGGCTTCGGCCCAGTAATATGAAATATGA 1 AAAGGCTTCAGCCCAGTAATATGAAATATGA ** 36992800 AAAGGCTTCAGCCCAGTGTTATGAAATATGA 1 AAAGGCTTCAGCCCAGTAATATGAAATATGA 36992831 AA 1 AA 36992833 TATGAAAAGG Statistics Matches: 30, Mismatches: 3, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 31 30 1.00 ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23 Consensus pattern (31 bp): AAAGGCTTCAGCCCAGTAATATGAAATATGA Found at i:37000370 original size:85 final size:85 Alignment explanation
Indices: 37000227--37000392 Score: 305 Period size: 85 Copynumber: 2.0 Consensus size: 85 37000217 GGTGGCCGAG 37000227 TATGGGTAAAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGC 1 TATGGGTAAAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGC * 37000292 AGCAAGGTATAGGGTCAAGA 66 AGCAAGGCATAGGGTCAAGA * 37000312 TATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGC 1 TATGGGTAAAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGC * 37000377 AGCAAGGCGTAGGGTC 66 AGCAAGGCATAGGGTC 37000393 GACTTGGATT Statistics Matches: 78, Mismatches: 3, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 85 78 1.00 ACGTcount: A:0.20, C:0.10, G:0.28, T:0.42 Consensus pattern (85 bp): TATGGGTAAAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGC AGCAAGGCATAGGGTCAAGA Found at i:37000962 original size:711 final size:711 Alignment explanation
Indices: 36999600--37001018 Score: 2741 Period size: 711 Copynumber: 2.0 Consensus size: 711 36999590 AGGTGGCCGA 36999600 ATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAG 1 ATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAG 36999665 CAGCAAGGCGTAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCAAT 66 CAGCAAGGCGTAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCAAT 36999730 TTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATATTA 131 TTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATATTA 36999795 GATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAATC 196 GATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAATC * * 36999860 GTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTTCATATCTT 261 GTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGCTT * 36999925 AGAATGAGCAAGCGAATGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTGGA 326 AGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTGGA 36999990 AAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCCCA 391 AAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCCCA * * 37000055 ATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTGGAAGAGTTGCATGTGAA 456 ATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTGAA * 37000120 CACGGTTAGTACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTAGG 521 CACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTAGG 37000185 GCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCCGAGTATGGGTAAAGGCCTTATTGGGC 586 GCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCCGAGTATGGGTAAAGGCCTTATTGGGC * 37000250 TTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGCAGCAAGGTATAGGGTCAAG 651 TTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGCAGCAAGGCATAGGGTCAAG 37000311 ATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAG 1 ATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAG 37000376 CAGCAAGGCGTAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCAAT 66 CAGCAAGGCGTAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCAAT 37000441 TTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATATTA 131 TTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATATTA 37000506 GATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAATC 196 GATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAATC 37000571 GTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGCTT 261 GTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGCTT 37000636 AGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTGGA 326 AGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTGGA 37000701 AAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCCCA 391 AAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCCCA * 37000766 ATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTTAA 456 ATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTGAA 37000831 CACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTAGG 521 CACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTAGG * 37000896 GCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCC-AGATATGGGTAGAGGCCTTATTGGG 586 GCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCCGAG-TATGGGTAAAGGCCTTATTGGG 37000960 CTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGCAGCAAGGCATAGGGTC 650 CTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGCAGCAAGGCATAGGGTC 37001019 GACTTGGATT Statistics Matches: 698, Mismatches: 9, Indels: 2 0.98 0.01 0.00 Matches are distributed among these distances: 710 2 0.00 711 696 1.00 ACGTcount: A:0.24, C:0.13, G:0.30, T:0.32 Consensus pattern (711 bp): ATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAG CAGCAAGGCGTAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCAAT TTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATATTA GATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAATC GTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGCTT AGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTGGA AAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCCCA ATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTGAA CACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTAGG GCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCCGAGTATGGGTAAAGGCCTTATTGGGC TTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGGAGCAGCAAGGCATAGGGTCAAG Found at i:37001500 original size:626 final size:626 Alignment explanation
Indices: 37000309--37001538 Score: 2408 Period size: 626 Copynumber: 2.0 Consensus size: 626 37000299 TATAGGGTCA 37000309 AGATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGG 1 AGATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGG * 37000374 AGCAGCAAGGCGTAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCA 66 AGCAGCAAGGCATAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCA 37000439 ATTTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATAT 131 ATTTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATAT 37000504 TAGATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAA 196 TAGATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAA 37000569 TCGTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGC 261 TCGTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGC 37000634 TTAGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTG 326 TTAGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTG 37000699 GAAAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCC 391 GAAAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCC 37000764 CAATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTT 456 CAATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTT 37000829 AACACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTA 521 AACACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTA 37000894 GGGCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCC 586 GGGCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCC 37000935 AGATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGG 1 AGATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGG * 37001000 AGCAGCAAGGCATAGGGTCGACTTGGATTAGTTTGGATCATCGGAGTGGCTAGAGCTAGTCATCA 66 AGCAGCAAGGCATAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCA 37001065 ATTTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATAT 131 ATTTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATAT * 37001130 TAGATGGTTCTCGATTTGGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAA 196 TAGATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAA * 37001195 TCGTGTAGGAGATCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTATTT-CATAG 261 TCGTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCT-TTTCCATAG 37001259 CTTAGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTT 325 CTTAGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTT 37001324 GGAAAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGC 390 GGAAAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGC 37001389 CCAATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGT 455 CCAATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGT 37001454 TAACACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGT 520 TAACACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGT 37001519 AGGGCCCATTAGGGGTTTTT 585 AGGGCCCATTAGGGGTTTTT 37001539 GGCCCAATAA Statistics Matches: 599, Mismatches: 4, Indels: 2 0.99 0.01 0.00 Matches are distributed among these distances: 626 596 0.99 627 3 0.01 ACGTcount: A:0.25, C:0.14, G:0.30, T:0.31 Consensus pattern (626 bp): AGATATGGGTAGAGGCCTTATTGGGCTTTTCTTTTAATCTTTTTTATTGTTTTGTTTAGTGGAGG AGCAGCAAGGCATAGGGTCGACTTGGATTAGTTTGGATCATCAGAGTGGCTAGAGCTAGTCATCA ATTTCGGCAAAGGTAAGGTTCTTAAGGCCATTATGGTGGGTGGCCGAATGTGTAAGTGTTGATAT TAGATGGTTCTCGATTTAGTTCAATTATTGTGAGCTGATCTATTAACGGTTGATTATAGGAGAAA TCGTGTAGGAGAGCTCGTCGAGGAATATCGCAAAAACAGGTGTGTAACGAACCCTTTTCCATAGC TTAGAATGAGCAAGCGAACGCTCATTGGTTAGTTCGATTCGCCGGGTTGATGATCGGGAACGTTG GAAAAGGTAAGGGCATGATTTTGGCATTCACGGTAAGTTGGGCCTCGAGGGGCCAAAATCGGGCC CAATGGGCTTCCAGGCCCATTTGGGTAGAAATGATAGAAAATGGAATTTAGAAAAGTTGCATGTT AACACGGTTAATACTGTTGTCAAGTTTGAGTTAAGTGGGCTTAGTGGGCTAAGTCGGCATTTGTA GGGCCCATTAGGGGTTTTTCTTTTAGTTTAGAGAGGTGGCC Found at i:37001776 original size:20 final size:20 Alignment explanation
Indices: 37001743--37001817 Score: 102 Period size: 20 Copynumber: 3.9 Consensus size: 20 37001733 ATACGTGGGA 37001743 TATGATAT--ACATGA-ATG 1 TATGATATGCACATGATATG 37001760 ATATGATATGCACATGATATG 1 -TATGATATGCACATGATATG * 37001781 TATAATATGCACATGATATG 1 TATGATATGCACATGATATG * 37001801 TATGAAATGCACATGAT 1 TATGATATGCACATGAT 37001818 GTAATCATAA Statistics Matches: 51, Mismatches: 3, Indels: 4 0.88 0.05 0.07 Matches are distributed among these distances: 18 8 0.16 20 40 0.78 21 3 0.06 ACGTcount: A:0.40, C:0.09, G:0.17, T:0.33 Consensus pattern (20 bp): TATGATATGCACATGATATG Found at i:37001912 original size:26 final size:26 Alignment explanation
Indices: 37001867--37002028 Score: 206 Period size: 26 Copynumber: 6.3 Consensus size: 26 37001857 GAGGAAGTGC * 37001867 AAAAGGGC-TATGCCCAAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTATTG * 37001892 AAAAGGGCTTATGCCCCAGTTTATCG 1 AAAAGGGCTTATGCCCCAGTTTATTG 37001918 AAAAGGGCTTATGCCCCAGTTTATTG 1 AAAAGGGCTTATGCCCCAGTTTATTG * * * * 37001944 AAAAGAGCTTATGCCCTATTTTACTG 1 AAAAGGGCTTATGCCCCAGTTTATTG * * * 37001970 AAAAGGACTTATGCCCTAGTTTACTG 1 AAAAGGGCTTATGCCCCAGTTTATTG 37001996 AAAAGGGCTT-TGCCCCAG-TTATT- 1 AAAAGGGCTTATGCCCCAGTTTATTG 37002019 AAAAGAGGCT 1 AAAAG-GGCT 37002029 AGGCCTCCAG Statistics Matches: 122, Mismatches: 13, Indels: 5 0.87 0.09 0.04 Matches are distributed among these distances: 23 5 0.04 24 8 0.07 25 15 0.12 26 94 0.77 ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29 Consensus pattern (26 bp): AAAAGGGCTTATGCCCCAGTTTATTG Found at i:37004346 original size:34 final size:36 Alignment explanation
Indices: 37004289--37004359 Score: 92 Period size: 36 Copynumber: 2.0 Consensus size: 36 37004279 TAATTTTACA * * 37004289 TTTTTAATTATGTCTTGATCATTAAGTG-TTTGCATT 1 TTTTTAATTATGACATGA-CATTAAGTGTTTTGCATT * 37004325 TTTTTAATTATGACATG-CATTATGTGTTTTGCATT 1 TTTTTAATTATGACATGACATTAAGTGTTTTGCATT 37004360 AAATAAAGTC Statistics Matches: 31, Mismatches: 3, Indels: 3 0.84 0.08 0.08 Matches are distributed among these distances: 34 8 0.26 35 8 0.26 36 15 0.48 ACGTcount: A:0.23, C:0.08, G:0.14, T:0.55 Consensus pattern (36 bp): TTTTTAATTATGACATGACATTAAGTGTTTTGCATT Found at i:37004423 original size:50 final size:52 Alignment explanation
Indices: 37004357--37004479 Score: 151 Period size: 50 Copynumber: 2.4 Consensus size: 52 37004347 TGTGTTTTGC * * * * * 37004357 ATTAAATAAAGTCATGCATTATATAACTCTCATGTTA-TTCAAGTTTGCATC 1 ATTAAATTAAGACATGCATTATACAACTCTCATGTTAGTTAAAGTTTGCATA * * * 37004408 A-TAAATTATGACATGCTTTATGCAACTCTCATGTTAGTTAAAGTTTGCATA 1 ATTAAATTAAGACATGCATTATACAACTCTCATGTTAGTTAAAGTTTGCATA * 37004459 ATTAAATTAAGTCATGCATTA 1 ATTAAATTAAGACATGCATTA 37004480 AGTAACTTAT Statistics Matches: 59, Mismatches: 11, Indels: 3 0.81 0.15 0.04 Matches are distributed among these distances: 50 29 0.49 51 14 0.24 52 16 0.27 ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39 Consensus pattern (52 bp): ATTAAATTAAGACATGCATTATACAACTCTCATGTTAGTTAAAGTTTGCATA Found at i:37005770 original size:27 final size:26 Alignment explanation
Indices: 37005740--37005810 Score: 115 Period size: 27 Copynumber: 2.7 Consensus size: 26 37005730 GCAAAACAGT 37005740 AGGGCAAAATAGTCATTTTACCACATA 1 AGGGCAAAA-AGTCATTTTACCACATA * 37005767 AGGGCAAAACAATCATTTTACCACATA 1 AGGGCAAAA-AGTCATTTTACCACATA 37005794 AGGGCAAAAAGTCATTT 1 AGGGCAAAAAGTCATTT 37005811 ATCAATTTGG Statistics Matches: 41, Mismatches: 3, Indels: 1 0.91 0.07 0.02 Matches are distributed among these distances: 26 7 0.17 27 34 0.83 ACGTcount: A:0.42, C:0.18, G:0.15, T:0.24 Consensus pattern (26 bp): AGGGCAAAAAGTCATTTTACCACATA Found at i:37006060 original size:17 final size:18 Alignment explanation
Indices: 37006038--37006072 Score: 63 Period size: 17 Copynumber: 2.0 Consensus size: 18 37006028 GATTTACCCA 37006038 TGTGGGGCCCACA-AGCC 1 TGTGGGGCCCACACAGCC 37006055 TGTGGGGCCCACACAGCC 1 TGTGGGGCCCACACAGCC 37006073 CAGTATGGCC Statistics Matches: 17, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 17 13 0.76 18 4 0.24 ACGTcount: A:0.17, C:0.37, G:0.34, T:0.11 Consensus pattern (18 bp): TGTGGGGCCCACACAGCC Found at i:37008682 original size:67 final size:65 Alignment explanation
Indices: 37008491--37008738 Score: 206 Period size: 67 Copynumber: 3.8 Consensus size: 65 37008481 CATAATTTTG * * * * 37008491 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGCTAGT--T-TATCTCAT 1 GCTCTCTTGTACACATGGTGTACAC-TAGTACCACACATGCGACCTAGCTAATCATATATCTCAT 37008553 A 65 A * * * * 37008554 GCTCTCTTGT-CTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCT-A-CATATATC 1 GCTCTCTTGTAC-ACATGGTG---TACA-CTAGTACCACACATGCGACCTAGCTAATCATATATC * 37008616 CCATA 61 TCATA * 37008621 GCTCTCTTGT-CTACATGGTGTACACATAGTATCAC-CATGCGACCTAGCTACATCATAATATCT 1 GCTCTCTTGTAC-ACATGGTGTACAC-TAGTACCACACATGCGACCTAGCTA-ATCAT-ATATCT * 37008684 CGTA 62 CATA * * * * 37008688 GCTCTCTTGTACACATGATGTGCACTCAGCACCACACATGTGACCTAGCTA 1 GCTCTCTTGTACACATGGTGTACACT-AGTACCACACATGCGACCTAGCTA 37008739 CATACCATCT Statistics Matches: 150, Mismatches: 19, Indels: 27 0.77 0.10 0.14 Matches are distributed among these distances: 62 1 0.01 63 33 0.22 64 9 0.06 65 1 0.01 66 27 0.18 67 64 0.43 68 15 0.10 ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29 Consensus pattern (65 bp): GCTCTCTTGTACACATGGTGTACACTAGTACCACACATGCGACCTAGCTAATCATATATCTCATA Found at i:37012532 original size:21 final size:20 Alignment explanation
Indices: 37012494--37012532 Score: 51 Period size: 21 Copynumber: 1.9 Consensus size: 20 37012484 ACAATCTTGT * 37012494 ATAACTATCATCAGACATTC 1 ATAACTATCATCAAACATTC * 37012514 ATAATCTATCATTAAACAT 1 ATAA-CTATCATCAAACAT 37012533 AAAAAATACT Statistics Matches: 16, Mismatches: 2, Indels: 1 0.84 0.11 0.05 Matches are distributed among these distances: 20 4 0.25 21 12 0.75 ACGTcount: A:0.44, C:0.21, G:0.03, T:0.33 Consensus pattern (20 bp): ATAACTATCATCAAACATTC Found at i:37018792 original size:19 final size:18 Alignment explanation
Indices: 37018763--37018800 Score: 67 Period size: 19 Copynumber: 2.1 Consensus size: 18 37018753 AGGGAATTTT 37018763 TATTTTATTTAATTAATA 1 TATTTTATTTAATTAATA 37018781 TATTTATATTTAATTAATA 1 TATTT-TATTTAATTAATA 37018800 T 1 T 37018801 TAATATTAAT Statistics Matches: 19, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 18 5 0.26 19 14 0.74 ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61 Consensus pattern (18 bp): TATTTTATTTAATTAATA Found at i:37018996 original size:67 final size:67 Alignment explanation
Indices: 37018923--37019066 Score: 252 Period size: 67 Copynumber: 2.1 Consensus size: 67 37018913 AATTTTGAGG * * 37018923 GTTAATTTTTAAAAATTATGACTAAATTGATATATTATGTAAAAATTTAGGGTTAATATGTTATT 1 GTTAATTTTTAAAAATGATGACTAAATTGATATAATATGTAAAAATTTAGGGTTAATATGTTATT 37018988 AT 66 AT * 37018990 GTTAATTTTTAAAAATGATGACTAAATTGATATAATATGTAAAAATTTAGGGTTAATTTGTTATT 1 GTTAATTTTTAAAAATGATGACTAAATTGATATAATATGTAAAAATTTAGGGTTAATATGTTATT 37019055 AT 66 AT * 37019057 GCTAATTTTT 1 GTTAATTTTT 37019067 TAACTACCAT Statistics Matches: 73, Mismatches: 4, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 67 73 1.00 ACGTcount: A:0.39, C:0.02, G:0.12, T:0.47 Consensus pattern (67 bp): GTTAATTTTTAAAAATGATGACTAAATTGATATAATATGTAAAAATTTAGGGTTAATATGTTATT AT Found at i:37019413 original size:24 final size:25 Alignment explanation
Indices: 37019364--37019413 Score: 68 Period size: 24 Copynumber: 2.0 Consensus size: 25 37019354 CTTTCATAAT 37019364 ATTACTAAATTTACATGTAAAAATA 1 ATTACTAAATTTACATGTAAAAATA * 37019389 ATTA-TAATATTTA-ATTTAAAAATA 1 ATTACTAA-ATTTACATGTAAAAATA 37019413 A 1 A 37019414 CTAAAAATTA Statistics Matches: 23, Mismatches: 1, Indels: 3 0.85 0.04 0.11 Matches are distributed among these distances: 24 14 0.61 25 9 0.39 ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40 Consensus pattern (25 bp): ATTACTAAATTTACATGTAAAAATA Found at i:37023318 original size:43 final size:44 Alignment explanation
Indices: 37023234--37023386 Score: 129 Period size: 43 Copynumber: 3.6 Consensus size: 44 37023224 TCTGAGACAT * * * * * 37023234 CGTGTAAGACCGTGTCTGGGACA-CAGGCCTTGAT-TAAGATTTA 1 CGTGTAAGACCATGTCTGGGACATCAGACATCGATAT-TGATTTA * 37023277 CGTATAAGACCATGTCTGGGACATCA-ACATCG-TATCTGATTT- 1 CGTGTAAGACCATGTCTGGGACATCAGACATCGATAT-TGATTTA * * * * * 37023319 TGTGTAAGACCCTGTCTGGGACA-GAGGCATCGATATTGAATTA 1 CGTGTAAGACCATGTCTGGGACATCAGACATCGATATTGATTTA * * 37023362 CATGTAAGACCACGTCTGGGACATC 1 CGTGTAAGACCATGTCTGGGACATC 37023387 GGCATTGTAC Statistics Matches: 86, Mismatches: 18, Indels: 11 0.75 0.16 0.10 Matches are distributed among these distances: 41 1 0.01 42 31 0.36 43 52 0.60 44 2 0.02 ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27 Consensus pattern (44 bp): CGTGTAAGACCATGTCTGGGACATCAGACATCGATATTGATTTA Found at i:37023350 original size:42 final size:43 Alignment explanation
Indices: 37023281--37023386 Score: 103 Period size: 42 Copynumber: 2.5 Consensus size: 43 37023271 GATTTACGTA * *** 37023281 TAAGACCATGTCTGGGACATCAACATCG-TATCTG-ATTTTGTG 1 TAAGACCCTGTCTGGGACATCAACATCGATAT-TGAATTACATG * * 37023323 TAAGACCCTGTCTGGGACA-GAGGCATCGATATTGAATTACATG 1 TAAGACCCTGTCTGGGACATCA-ACATCGATATTGAATTACATG 37023366 TAAGACCAC-GTCTGGGACATC 1 TAAGACC-CTGTCTGGGACATC 37023387 GGCATTGTAC Statistics Matches: 52, Mismatches: 7, Indels: 8 0.78 0.10 0.12 Matches are distributed among these distances: 41 1 0.02 42 25 0.48 43 25 0.48 44 1 0.02 ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27 Consensus pattern (43 bp): TAAGACCCTGTCTGGGACATCAACATCGATATTGAATTACATG Found at i:37030543 original size:34 final size:34 Alignment explanation
Indices: 37030471--37030565 Score: 109 Period size: 34 Copynumber: 2.7 Consensus size: 34 37030461 GTTAGTTCCG * * * 37030471 GTTTGGGCCTTAGCCCCTTTTTCAGTAAAAGTATCA 1 GTTTGGGCCTTAG--CCTATTTCAGTAAAAGAAGCA * * 37030507 GTTTGGGCCTGAGCCTATTTCAGTAACAGAAGCA 1 GTTTGGGCCTTAGCCTATTTCAGTAAAAGAAGCA * * 37030541 GTTTGGGCCTTATCCAATTTCAGTA 1 GTTTGGGCCTTAGCCTATTTCAGTA 37030566 CAGTATGCAA Statistics Matches: 51, Mismatches: 8, Indels: 2 0.84 0.13 0.03 Matches are distributed among these distances: 34 39 0.76 36 12 0.24 ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34 Consensus pattern (34 bp): GTTTGGGCCTTAGCCTATTTCAGTAAAAGAAGCA Found at i:37041956 original size:47 final size:47 Alignment explanation
Indices: 37041885--37042023 Score: 217 Period size: 47 Copynumber: 3.0 Consensus size: 47 37041875 GAATTTAAAA * * * * 37041885 CTTGTTAAA-TTACTCTTAATATTTCCAGATAAGTTACTTAGTTATG 1 CTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTAAG 37041931 CTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTAAG 1 CTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTAAG * * 37041978 CTTGTTAAATTTGCCCTTATTATTTCTGGATAAGTTACTTAGTTAA 1 CTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTAA 37042024 AGAAAATTTT Statistics Matches: 86, Mismatches: 6, Indels: 1 0.92 0.06 0.01 Matches are distributed among these distances: 46 9 0.10 47 77 0.90 ACGTcount: A:0.28, C:0.14, G:0.13, T:0.45 Consensus pattern (47 bp): CTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTTAAG Found at i:37042867 original size:45 final size:45 Alignment explanation
Indices: 37042803--37043001 Score: 242 Period size: 45 Copynumber: 4.5 Consensus size: 45 37042793 CGCACAGTAT * * 37042803 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTCGGTGAGATAC 1 TATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAGATAC * * 37042848 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAC 1 TATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAGATAC ** * * * * 37042893 TATTCAAGCCTTTGAGCCTAGAAAGCTATAAAGCCGATGAGATGC 1 TATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAGATAC * * * 37042938 TATTTGGGCCTTTGAGCCTAGCAAGCTATAATACCGGTGAAATGA- 1 TATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAGAT-AC * 37042983 TA-TCGGG-CTTCGAGCCTAG 1 TATTCGGGCCTTTGAGCCTAG 37043002 TAGGCGAAAT Statistics Matches: 132, Mismatches: 21, Indels: 4 0.84 0.13 0.03 Matches are distributed among these distances: 43 11 0.08 44 4 0.03 45 117 0.89 ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27 Consensus pattern (45 bp): TATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAGATAC Found at i:37054255 original size:40 final size:40 Alignment explanation
Indices: 37054210--37055161 Score: 380 Period size: 40 Copynumber: 23.8 Consensus size: 40 37054200 ATAACCACAA * * * 37054210 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC 1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC * 37054250 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC 1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC * * * * 37054290 GAACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054330 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054370 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054410 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054450 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054490 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054530 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054570 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054610 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054650 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054690 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054730 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054770 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054810 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054850 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054890 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054930 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37054970 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37055010 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37055050 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * * * * * * 37055090 GCATAAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTA 1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC * ** * 37055130 GCATAAATGCCTTCGGAACTTAGCCCTGATAT 1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT 37055162 CATTCAAATG Statistics Matches: 896, Mismatches: 15, Indels: 3 0.98 0.02 0.00 Matches are distributed among these distances: 39 1 0.00 40 891 0.99 41 4 0.00 ACGTcount: A:0.32, C:0.28, G:0.18, T:0.23 Consensus pattern (40 bp): GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC Found at i:37054317 original size:80 final size:80 Alignment explanation
Indices: 37054254--37055160 Score: 1699 Period size: 80 Copynumber: 11.3 Consensus size: 80 37054244 CAACTCGCAC * * * * * * * * 37054254 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGAACAAATGCCTTCGGGTCTTAGCCCGG 1 AAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTACCCCGG 37054318 ATAAAATCACTAGCAT 65 ATAAAATCACTAGCAT 37054334 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37054399 TAAAATCACTAGCAT 66 TAAAATCACTAGCAT 37054414 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37054479 TAAAATCACTAGCAT 66 TAAAATCACTAGCAT 37054494 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37054559 TAAAATCACTAGCAT 66 TAAAATCACTAGCAT 37054574 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37054639 TAAAATCACTAGCAT 66 TAAAATCACTAGCAT 37054654 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37054719 TAAAATCACTAGCAT 66 TAAAATCACTAGCAT 37054734 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37054799 TAAAATCACTAGCAT 66 TAAAATCACTAGCAT 37054814 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37054879 TAAAATCACTAGCAT 66 TAAAATCACTAGCAT 37054894 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37054959 TAAAATCACTAGCAT 66 TAAAATCACTAGCAT 37054974 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37055039 TAAAATCACTAGCAT 66 TAAAATCACTAGCAT 37055054 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37055119 TAAAATCACTAGCAT 66 TAAAATCACTAGCAT * * * 37055134 AAATGCCTTCGGAACTTAGCCCTGATA 1 AAATGCCTTCGGGACTTACCCCGGATA 37055161 TCATTCAAAT Statistics Matches: 815, Mismatches: 11, Indels: 2 0.98 0.01 0.00 Matches are distributed among these distances: 80 811 1.00 81 4 0.00 ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23 Consensus pattern (80 bp): AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA TAAAATCACTAGCAT Found at i:37054418 original size:120 final size:120 Alignment explanation
Indices: 37054254--37055160 Score: 1699 Period size: 120 Copynumber: 7.6 Consensus size: 120 37054244 CAACTCGCAC * * * * * * * * 37054254 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGAACAAATGCCTTCGGGTCTTAGCCCGG 1 AAATGCCTTCGGGACTTACCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTACCCCGG 37054318 ATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT 65 ATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT 37054374 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37054439 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT 66 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT 37054494 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37054559 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT 66 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT 37054614 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37054679 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT 66 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT 37054734 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37054799 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT 66 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT 37054854 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37054919 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT 66 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT 37054974 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37055039 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT 66 TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT * * * 37055094 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGAACTTAGCCCTGA 1 AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA 37055159 TA 66 TA 37055161 TCATTCAAAT Statistics Matches: 775, Mismatches: 11, Indels: 2 0.98 0.01 0.00 Matches are distributed among these distances: 120 771 0.99 121 4 0.01 ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23 Consensus pattern (120 bp): AAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGA TAAAATCACTAGCATAAATGCCTTCGGGACTTACCCCGGATAAAATCACTAGCAT Found at i:37065554 original size:29 final size:29 Alignment explanation
Indices: 37065504--37065645 Score: 124 Period size: 29 Copynumber: 4.9 Consensus size: 29 37065494 TTTCTTCAAC * * * * * 37065504 GATGGTTGAAACCATTCTTTTTAACATTT 1 GATGGTCGAAACCATCCCTTTTCATATTT 37065533 GATGGTCGAAACCATCCCTTTTCATATTT 1 GATGGTCGAAACCATCCCTTTTCATATTT * * * * 37065562 GATAG-CCAAAGCTATCCCTTTTCATATTC 1 GATGGTCGAAA-CCATCCCTTTTCATATTT ** * * 37065591 GATGGTCGTCACCATCCTTTTTCATAGTT 1 GATGGTCGAAACCATCCCTTTTCATATTT ** * 37065620 GATGGTCGTCACTATCCCTTTTCATA 1 GATGGTCGAAACCATCCCTTTTCATA 37065646 ATCGGTAGCC Statistics Matches: 92, Mismatches: 19, Indels: 4 0.80 0.17 0.03 Matches are distributed among these distances: 28 4 0.04 29 86 0.93 30 2 0.02 ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39 Consensus pattern (29 bp): GATGGTCGAAACCATCCCTTTTCATATTT Found at i:37066476 original size:63 final size:63 Alignment explanation
Indices: 37066377--37066503 Score: 245 Period size: 63 Copynumber: 2.0 Consensus size: 63 37066367 TTGGAGCTTC 37066377 TCCCTTTCTTTATCCATGGTGACATTCAGTTTAAAGAAGAATGAAGAAAAACAAATCATAATT 1 TCCCTTTCTTTATCCATGGTGACATTCAGTTTAAAGAAGAATGAAGAAAAACAAATCATAATT * 37066440 TCCCTTTCTTTATCCATGGTGACATTCAGTTTAAAGAAGAATGAAGAAAAACAAATCGTAATT 1 TCCCTTTCTTTATCCATGGTGACATTCAGTTTAAAGAAGAATGAAGAAAAACAAATCATAATT 37066503 T 1 T 37066504 TCATCTTTAA Statistics Matches: 63, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 63 63 1.00 ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32 Consensus pattern (63 bp): TCCCTTTCTTTATCCATGGTGACATTCAGTTTAAAGAAGAATGAAGAAAAACAAATCATAATT Found at i:37069946 original size:25 final size:25 Alignment explanation
Indices: 37069918--37069987 Score: 113 Period size: 25 Copynumber: 2.8 Consensus size: 25 37069908 CTCTTTTAAT * 37069918 AACTGGGGCAAAGCCCTTTTTGATA 1 AACTGGGGCAAAGCCCTTTTCGATA * * 37069943 AACTGGGGCAAAACCCTTTTCGGTA 1 AACTGGGGCAAAGCCCTTTTCGATA 37069968 AACTGGGGCAAAGCCCTTTT 1 AACTGGGGCAAAGCCCTTTT 37069988 AGCACTTCCT Statistics Matches: 41, Mismatches: 4, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 25 41 1.00 ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26 Consensus pattern (25 bp): AACTGGGGCAAAGCCCTTTTCGATA Found at i:37070224 original size:27 final size:27 Alignment explanation
Indices: 37070194--37070406 Score: 226 Period size: 27 Copynumber: 7.9 Consensus size: 27 37070184 GGCAAAATGG * * * 37070194 TAATTTTACCCCACAAGGGTATCTCGA 1 TAATTCTACCCTACAAGGGTATTTCGA ** 37070221 TAATTCTACCCTACAAGGGTATTTTAA 1 TAATTCTACCCTACAAGGGTATTTCGA * 37070248 TATTTCTACCCTACAAGGGTATTTCGA 1 TAATTCTACCCTACAAGGGTATTTCGA 37070275 TAATTCTACCCTAC-AGGGTTATTTC-A 1 TAATTCTACCCTACAAGGG-TATTTCGA 37070301 GTAATTCTACCCTAC-AGGGTTATTTC-A 1 -TAATTCTACCCTACAAGGG-TATTTCGA * 37070328 GTAATTCTACCCTAC-AGGGATATTTCGG 1 -TAATTCTACCCTACAAGGG-TATTTCGA * * 37070356 TAATTCTACCCTA-TAGAGGTATTTCGG 1 TAATTCTACCCTACAAG-GGTATTTCGA 37070383 TAATTC-ACCCTAC-AGGGTTATTTC 1 TAATTCTACCCTACAAGGG-TATTTC 37070407 AGTAATTTTG Statistics Matches: 168, Mismatches: 11, Indels: 15 0.87 0.06 0.08 Matches are distributed among these distances: 25 2 0.01 26 19 0.11 27 145 0.86 28 2 0.01 ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36 Consensus pattern (27 bp): TAATTCTACCCTACAAGGGTATTTCGA Found at i:37070306 original size:81 final size:81 Alignment explanation
Indices: 37070221--37070413 Score: 268 Period size: 81 Copynumber: 2.4 Consensus size: 81 37070211 GGTATCTCGA * * 37070221 TAATTCTACCCTACAAGGG-TATTTTAATATTTCTACCCTACAAGGG-TATTTCGATAATTCTAC 1 TAATTCTACCCTAC-AGGGTTATTTCAATAATTCTACCCTAC-AGGGATATTTCGATAATTCTAC 37070284 CCTACAG-GGTTATTTCAG 64 CCTACAGAGG-TATTTCAG * * 37070302 TAATTCTACCCTACAGGGTTATTTCAGTAATTCTACCCTACAGGGATATTTCGGTAATTCTACCC 1 TAATTCTACCCTACAGGGTTATTTCAATAATTCTACCCTACAGGGATATTTCGATAATTCTACCC * * 37070367 TATAGAGGTATTTCGG 66 TACAGAGGTATTTCAG * 37070383 TAATTC-ACCCTACAGGGTTATTTCAGTAATT 1 TAATTCTACCCTACAGGGTTATTTCAATAATT 37070414 TTGTAAATTG Statistics Matches: 103, Mismatches: 6, Indels: 7 0.89 0.05 0.06 Matches are distributed among these distances: 80 33 0.32 81 68 0.66 82 2 0.02 ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37 Consensus pattern (81 bp): TAATTCTACCCTACAGGGTTATTTCAATAATTCTACCCTACAGGGATATTTCGATAATTCTACCC TACAGAGGTATTTCAG Found at i:37070446 original size:27 final size:27 Alignment explanation
Indices: 37070408--37070545 Score: 213 Period size: 27 Copynumber: 5.1 Consensus size: 27 37070398 GGTTATTTCA * * * 37070408 GTAATTTTGTAAATTGAAGGTAAAATG 1 GTAATTCTGTAAATCGAGGGTAAAATG 37070435 GTAATTCTGTAAATCGAGGGTAAAATG 1 GTAATTCTGTAAATCGAGGGTAAAATG * * 37070462 GTAATTCTATAAATCGAGAGTAAAATG 1 GTAATTCTGTAAATCGAGGGTAAAATG * 37070489 GTAATTCTGTAAATCGAGGGTAAAATA 1 GTAATTCTGTAAATCGAGGGTAAAATG * 37070516 GTAATTCTATAAATCGAGGGTAAAATG 1 GTAATTCTGTAAATCGAGGGTAAAATG 37070543 GTA 1 GTA 37070546 CTATAAATCG Statistics Matches: 101, Mismatches: 10, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 27 101 1.00 ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31 Consensus pattern (27 bp): GTAATTCTGTAAATCGAGGGTAAAATG Found at i:37070511 original size:81 final size:78 Alignment explanation
Indices: 37070408--37070561 Score: 236 Period size: 81 Copynumber: 1.9 Consensus size: 78 37070398 GGTTATTTCA * * * * 37070408 GTAATTTTGTAAATTGAAGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA 1 GTAATTCTGTAAATCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGT-A--CTATA 37070473 AATCGAGAGTAAAATG 63 AATCGAGAGTAAAATG * 37070489 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTACTATAAAT 1 GTAATTCTGTAAATCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTACTATAAAT 37070554 CGAGAGTA 66 CGAGAGTA 37070562 TTTTGTTAAT Statistics Matches: 68, Mismatches: 5, Indels: 3 0.89 0.07 0.04 Matches are distributed among these distances: 78 16 0.24 80 1 0.01 81 51 0.75 ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31 Consensus pattern (78 bp): GTAATTCTGTAAATCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTACTATAAAT CGAGAGTAAAATG Found at i:37070589 original size:27 final size:27 Alignment explanation
Indices: 37070559--37070726 Score: 185 Period size: 27 Copynumber: 6.2 Consensus size: 27 37070549 TAAATCGAGA * * * 37070559 GTATTTTGTTAATTTCACAAATCAGGG 1 GTATTTTGGTAATTTTACAAACCAGGG * * * 37070586 GTATTTTGGTAAGTTTACAAGCCAGTG 1 GTATTTTGGTAATTTTACAAACCAGGG 37070613 GTATTTTGGTAATTTTACAAACCAGGG 1 GTATTTTGGTAATTTTACAAACCAGGG * * 37070640 GTATTTTAGTAATTTTACAAACAAGGG 1 GTATTTTGGTAATTTTACAAACCAGGG ** * * 37070667 GTATTTTGGTAATTTTACTGATC-GAAG 1 GTATTTTGGTAATTTTACAAACCAG-GG ** * 37070694 GTATTTTGGTAATTTTGTAAACCAAGG 1 GTATTTTGGTAATTTTACAAACCAGGG 37070721 GTATTT 1 GTATTT 37070727 CAATAATTTT Statistics Matches: 115, Mismatches: 24, Indels: 4 0.80 0.17 0.03 Matches are distributed among these distances: 26 1 0.01 27 114 0.99 ACGTcount: A:0.29, C:0.09, G:0.21, T:0.40 Consensus pattern (27 bp): GTATTTTGGTAATTTTACAAACCAGGG Found at i:37070667 original size:81 final size:81 Alignment explanation
Indices: 37070559--37070736 Score: 209 Period size: 81 Copynumber: 2.2 Consensus size: 81 37070549 TAAATCGAGA * * 37070559 GTATTTT-GTTAATTTCACAAATCAGGGGTATTTTGGTAAGTTTAC-AAGCCAGTGGTATTTTGG 1 GTATTTTAG-TAATTTTACAAATCAGGGGTATTTTGGTAAGTTTACTAAGCCA-AGGTATTTTGG * 37070622 TAATTTTACAAACCAGGG 64 TAATTTTACAAACCAAGG * * * * 37070640 GTATTTTAGTAATTTTACAAA-CAAGGGGTATTTTGGTAATTTTACTGATCGAAGGTATTTTGGT 1 GTATTTTAGTAATTTTACAAATC-AGGGGTATTTTGGTAAGTTTACTAAGCCAAGGTATTTTGGT ** 37070704 AATTTTGTAAACCAAGG 65 AATTTTACAAACCAAGG * * 37070721 GTATTTCAATAATTTT 1 GTATTTTAGTAATTTT 37070737 GTAAACTAAA Statistics Matches: 83, Mismatches: 11, Indels: 6 0.83 0.11 0.06 Matches are distributed among these distances: 80 1 0.01 81 78 0.94 82 4 0.05 ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41 Consensus pattern (81 bp): GTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAAGTTTACTAAGCCAAGGTATTTTGGTA ATTTTACAAACCAAGG Found at i:37077131 original size:114 final size:118 Alignment explanation
Indices: 37076928--37077152 Score: 300 Period size: 114 Copynumber: 1.9 Consensus size: 118 37076918 GCCAGTCACT * * * * * 37076928 AGCACTAAGCCTGCGGGACTTTAAGCTCAGATATAATACCAGCACTAGGCCTGCGGGATTTAACC 1 AGCACGAAGCCTGCGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCGAGATTTAACC 37076993 CGGATATAATTCCAGCACGAAGCCTGC-GGGATTTAA-CCCGGATATAATTCC 66 CGGATATAATTCCAGCACGAAGCCTGCTGGGATTTAAGCCCGGATATAATTCC * * 37077044 AGCACGAAGCCTGCGGGA-TTTAA-CCC-GAATATATTACTAGCACGAAGCCTGCGAGATTTAAC 1 AGCACGAAGCCTGCGGGACTTTAAGCCCAG-ATATAATACCAGCACGAAGCCTGCGAGATTTAAC * ** 37077106 CCGGATATAATTCCAGCA-TATAGCCTGCTGGTCTTTAAGCCCGGATA 65 CCGGATATAATTCCAGCACGA-AGCCTGCTGGGATTTAAGCCCGGATA 37077153 CACATCAAAT Statistics Matches: 95, Mismatches: 10, Indels: 8 0.84 0.09 0.07 Matches are distributed among these distances: 113 2 0.02 114 56 0.59 115 12 0.13 116 25 0.26 ACGTcount: A:0.29, C:0.25, G:0.22, T:0.23 Consensus pattern (118 bp): AGCACGAAGCCTGCGGGACTTTAAGCCCAGATATAATACCAGCACGAAGCCTGCGAGATTTAACC CGGATATAATTCCAGCACGAAGCCTGCTGGGATTTAAGCCCGGATATAATTCC Found at i:37077133 original size:38 final size:38 Alignment explanation
Indices: 37076928--37077123 Score: 277 Period size: 38 Copynumber: 5.1 Consensus size: 38 37076918 GCCAGTCACT * * * * 37076928 AGCACTAAGCCTGCGGGACTTTAAGCTCAGATATAATACC 1 AGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAATTCC * * 37076968 AGCACTAGGCCTGCGGGATTTAACCCGGATATAATTCC 1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCC 37077006 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCC 1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCC * * 37077044 AGCACGAAGCCTGCGGGATTTAACCCGAATAT-ATTACT 1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATT-CC * 37077082 AGCACGAAGCCTGCGAGATTTAACCCGGATATAATTCC 1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCC 37077120 AGCA 1 AGCA 37077124 TATAGCCTGC Statistics Matches: 143, Mismatches: 11, Indels: 6 0.89 0.07 0.04 Matches are distributed among these distances: 37 3 0.02 38 115 0.80 39 8 0.06 40 17 0.12 ACGTcount: A:0.31, C:0.26, G:0.22, T:0.22 Consensus pattern (38 bp): AGCACGAAGCCTGCGGGATTTAACCCGGATATAATTCC Found at i:37081296 original size:80 final size:79 Alignment explanation
Indices: 37081212--37081383 Score: 220 Period size: 79 Copynumber: 2.2 Consensus size: 79 37081202 GGACTAAGAT * 37081212 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT 1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT * * 37081276 AAATCCGGGTTAAGTC 64 AAAACCGGGCTAAGTC * * * * * * * 37081292 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA 1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA * 37081357 AACCGGGCTATGTC 66 AACCGGGCTAAGTC 37081371 CCGAAGGCATTTG 1 CCGAAGGCATTTG 37081384 AACGAGGAAC Statistics Matches: 79, Mismatches: 12, Indels: 3 0.84 0.13 0.03 Matches are distributed among these distances: 79 38 0.48 80 38 0.48 81 3 0.04 ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26 Consensus pattern (79 bp): CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA AACCGGGCTAAGTC Found at i:37081363 original size:39 final size:39 Alignment explanation
Indices: 37081212--37081416 Score: 211 Period size: 40 Copynumber: 5.2 Consensus size: 39 37081202 GGACTAAGAT * 37081212 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC 1 CCGAAGGCA-TTGTGCGAGATACTAAA-TCCGGGTTAAGTC * 37081252 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC 1 CCGAAGG-CATTGTGCGAGATACTAAATCCGGGTTAAGTC * * * 37081292 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC 1 CCGAAGGCATT-GTGCGAGATACTAAATCCGGGTTAAGTC * * * * * 37081332 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC 1 CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC * * 37081371 CCGAAGGCATT-TGAACGAGGA-ACTATATCC-GGTTAAATC 1 CCGAAGGCATTGTG--CGA-GATACTAAATCCGGGTTAAGTC 37081410 CCGAAGG 1 CCGAAGG 37081417 TACGTGATTT Statistics Matches: 142, Mismatches: 17, Indels: 13 0.83 0.10 0.08 Matches are distributed among these distances: 38 2 0.01 39 51 0.36 40 84 0.59 41 5 0.04 ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24 Consensus pattern (39 bp): CCGAAGGCATTGTGCGAGATACTAAATCCGGGTTAAGTC Found at i:37081401 original size:79 final size:80 Alignment explanation
Indices: 37081239--37081416 Score: 198 Period size: 79 Copynumber: 2.2 Consensus size: 80 37081229 AGATACAAAT * * * * 37081239 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC 1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC ** ** * 37081304 GTGCGAGTTATTAAA 66 GAACGAGGAACTAAA * * * * * 37081319 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT 1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC * 37081383 GAACGAGGAACTATA 66 GAACGAGGAACTAAA * 37081398 TCC-GGTTAAATCCCGAAGG 1 TCCGGGTTAAGTCCCGAAGG 37081417 TACGTGATTT Statistics Matches: 81, Mismatches: 17, Indels: 2 0.81 0.17 0.02 Matches are distributed among these distances: 78 14 0.17 79 49 0.60 80 18 0.22 ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25 Consensus pattern (80 bp): TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC GAACGAGGAACTAAA Found at i:37089240 original size:80 final size:79 Alignment explanation
Indices: 37089156--37089327 Score: 220 Period size: 79 Copynumber: 2.2 Consensus size: 79 37089146 GGACTAAGAT * 37089156 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT 1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT * * 37089220 AAATCCGGGTTAAGTC 64 AAAACCGGGCTAAGTC * * * * * * * 37089236 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA 1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA * 37089301 AACCGGGCTATGTC 66 AACCGGGCTAAGTC 37089315 CCGAAGGCATTTG 1 CCGAAGGCATTTG 37089328 AACGAGGAGC Statistics Matches: 79, Mismatches: 12, Indels: 3 0.84 0.13 0.03 Matches are distributed among these distances: 79 38 0.48 80 38 0.48 81 3 0.04 ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26 Consensus pattern (79 bp): CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA AACCGGGCTAAGTC Found at i:37089307 original size:39 final size:39 Alignment explanation
Indices: 37089103--37089325 Score: 209 Period size: 40 Copynumber: 5.6 Consensus size: 39 37089093 TTGAATGCTG * * * * * 37089103 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA 1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA ** 37089143 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA 1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA * * 37089182 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA 1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA * * 37089223 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA 1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA * * * 37089263 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA 1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA * * * 37089302 ACCGGGCTATGTCCCGAAGGCATT 1 TCCGGGTTAAGTCCCGAAGGCATT 37089326 TGAACGAGGA Statistics Matches: 157, Mismatches: 18, Indels: 17 0.82 0.09 0.09 Matches are distributed among these distances: 39 40 0.25 40 103 0.66 41 13 0.08 42 1 0.01 ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26 Consensus pattern (39 bp): TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA Found at i:37089345 original size:79 final size:80 Alignment explanation
Indices: 37089183--37089360 Score: 191 Period size: 79 Copynumber: 2.2 Consensus size: 80 37089173 AGATACAAAT * * * * 37089183 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC 1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC ** * * 37089248 GTGCGAGTTATTAAA 66 GAACGAGTGACTAAA * * * * * 37089263 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT 1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC * 37089327 GAACGAG-GAGCTATA 66 GAACGAGTGA-CTAAA * 37089342 TCC-GGTTAAATCCCGAAGG 1 TCCGGGTTAAGTCCCGAAGG 37089361 TACGTGATTT Statistics Matches: 81, Mismatches: 16, Indels: 4 0.80 0.16 0.04 Matches are distributed among these distances: 78 15 0.19 79 48 0.59 80 18 0.22 ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25 Consensus pattern (80 bp): TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC GAACGAGTGACTAAA Found at i:37091016 original size:40 final size:40 Alignment explanation
Indices: 37090871--37091016 Score: 188 Period size: 40 Copynumber: 3.6 Consensus size: 40 37090861 GCTCCTCGTT * * 37090871 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA * * 37090911 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA * * * * 37090951 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA 1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA 37090992 CAAA-GCCTTCGGGACTTAGCCCGGA 1 CAAATGCCTTCGGGACTTAGCCCGGA 37091017 CATCATTCAA Statistics Matches: 92, Mismatches: 11, Indels: 6 0.84 0.10 0.06 Matches are distributed among these distances: 39 3 0.03 40 78 0.85 41 11 0.12 ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24 Consensus pattern (40 bp): CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA Found at i:37103227 original size:19 final size:19 Alignment explanation
Indices: 37103205--37103261 Score: 51 Period size: 26 Copynumber: 2.6 Consensus size: 19 37103195 TGCTAGGATG 37103205 ATTTATTTGATTAAATAAT 1 ATTTATTTGATTAAATAAT 37103224 ATTTATGATTTATTTGATTAAATAAT 1 A-TT-T-A--T--TTGATTAAATAAT 37103250 ATTTATTTGATT 1 ATTTATTTGATT 37103262 CATGCTTATA Statistics Matches: 31, Mismatches: 0, Indels: 14 0.69 0.00 0.31 Matches are distributed among these distances: 19 7 0.23 20 2 0.06 21 2 0.06 22 1 0.03 23 1 0.03 24 2 0.06 25 2 0.06 26 14 0.45 ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56 Consensus pattern (19 bp): ATTTATTTGATTAAATAAT Found at i:37103231 original size:26 final size:26 Alignment explanation
Indices: 37103202--37103255 Score: 108 Period size: 26 Copynumber: 2.1 Consensus size: 26 37103192 TTATGCTAGG 37103202 ATGATTTATTTGATTAAATAATATTT 1 ATGATTTATTTGATTAAATAATATTT 37103228 ATGATTTATTTGATTAAATAATATTT 1 ATGATTTATTTGATTAAATAATATTT 37103254 AT 1 AT 37103256 TTGATTCATG Statistics Matches: 28, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 26 28 1.00 ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54 Consensus pattern (26 bp): ATGATTTATTTGATTAAATAATATTT Found at i:37104931 original size:11 final size:12 Alignment explanation
Indices: 37104904--37104962 Score: 50 Period size: 11 Copynumber: 5.0 Consensus size: 12 37104894 TAGACTTACA 37104904 ATACATTTAATC 1 ATACATTTAATC * 37104916 ATACATTTCA-C 1 ATACATTTAATC * 37104927 ATACATTCAATC 1 ATACATTTAATC ** 37104939 ATTACAAATAATC 1 A-TACATTTAATC * 37104952 AT-CATTCAATC 1 ATACATTTAATC 37104963 TCAATCAATT Statistics Matches: 36, Mismatches: 9, Indels: 5 0.72 0.18 0.10 Matches are distributed among these distances: 11 15 0.42 12 12 0.33 13 9 0.25 ACGTcount: A:0.42, C:0.22, G:0.00, T:0.36 Consensus pattern (12 bp): ATACATTTAATC Found at i:37106305 original size:23 final size:23 Alignment explanation
Indices: 37106264--37106307 Score: 63 Period size: 23 Copynumber: 1.9 Consensus size: 23 37106254 AACCCCTAAT * 37106264 ATGCATAATTGTTTGATTTATGA 1 ATGCATAATTGATTGATTTATGA 37106287 ATGCATAA-TGATTGCATTTAT 1 ATGCATAATTGATTG-ATTTAT 37106308 TATTAGCATG Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 22 5 0.26 23 14 0.74 ACGTcount: A:0.32, C:0.07, G:0.16, T:0.45 Consensus pattern (23 bp): ATGCATAATTGATTGATTTATGA Found at i:37132888 original size:44 final size:41 Alignment explanation
Indices: 37132834--37132987 Score: 159 Period size: 43 Copynumber: 3.6 Consensus size: 41 37132824 CCAATATGTT 37132834 ATTTCGTGTAAGACCACGTCTGGGACATTAGCATCA-ATTTGAG 1 ATTTCGTGTAAGACCACGTCTGGGACATT-GCATCATATTT--G * * * 37132877 ATTTACGTGTAAGAGCATGTCTGGGACATCGGCATCATATTTG 1 ATTT-CGTGTAAGACCACGTCTGGGACAT-TGCATCATATTTG * 37132920 ATTTTGTGTAAGACC-CTGTCTGGGACAGTTGCATCGATATTTG 1 ATTTCGTGTAAGACCAC-GTCTGGGACA-TTGCATC-ATATTTG * * * 37132963 ATTACATGTAAGACCACGTTTGGGA 1 ATTTCGTGTAAGACCACGTCTGGGA 37132988 TGTTGGCATT Statistics Matches: 93, Mismatches: 11, Indels: 14 0.79 0.09 0.12 Matches are distributed among these distances: 42 24 0.26 43 36 0.39 44 29 0.31 45 4 0.04 ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32 Consensus pattern (41 bp): ATTTCGTGTAAGACCACGTCTGGGACATTGCATCATATTTG Found at i:37134390 original size:21 final size:21 Alignment explanation
Indices: 37134366--37134406 Score: 82 Period size: 21 Copynumber: 2.0 Consensus size: 21 37134356 CTAAGAAAGG 37134366 GAATTTGAAATAATGTTTGAT 1 GAATTTGAAATAATGTTTGAT 37134387 GAATTTGAAATAATGTTTGA 1 GAATTTGAAATAATGTTTGA 37134407 CTATGAGTGG Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 21 20 1.00 ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41 Consensus pattern (21 bp): GAATTTGAAATAATGTTTGAT Found at i:37140554 original size:21 final size:21 Alignment explanation
Indices: 37140530--37140588 Score: 66 Period size: 21 Copynumber: 2.8 Consensus size: 21 37140520 ACAACATCGA ** * 37140530 GGTTTTGTGACATGATGCAAT 1 GGTTTTGTGACATGACACAAC 37140551 GGTTTTGT-ATCATGACACAAC 1 GGTTTTGTGA-CATGACACAAC * 37140572 GGTTTTGTGTCATGACA 1 GGTTTTGTGACATGACA 37140589 TCGAGATAGT Statistics Matches: 32, Mismatches: 4, Indels: 4 0.80 0.10 0.10 Matches are distributed among these distances: 20 1 0.03 21 31 0.97 ACGTcount: A:0.24, C:0.14, G:0.25, T:0.37 Consensus pattern (21 bp): GGTTTTGTGACATGACACAAC Found at i:37146471 original size:29 final size:29 Alignment explanation
Indices: 37146405--37146500 Score: 149 Period size: 29 Copynumber: 3.3 Consensus size: 29 37146395 AAGTCTACAT * * * 37146405 ACATGCATATGGCCCACTAGGCAC-AATC 1 ACATTCATATGGCCCATTAGGCCCAAATC * 37146433 TCATTCATATGGCCCATTAGGCCCAAATC 1 ACATTCATATGGCCCATTAGGCCCAAATC 37146462 ACATTCATATGGCCCATTAGGCCCAAATC 1 ACATTCATATGGCCCATTAGGCCCAAATC 37146491 ACATTCATAT 1 ACATTCATAT 37146501 TCATGCTTTC Statistics Matches: 62, Mismatches: 5, Indels: 1 0.91 0.07 0.01 Matches are distributed among these distances: 28 20 0.32 29 42 0.68 ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25 Consensus pattern (29 bp): ACATTCATATGGCCCATTAGGCCCAAATC Found at i:37149863 original size:8 final size:8 Alignment explanation
Indices: 37149846--37149890 Score: 63 Period size: 8 Copynumber: 5.6 Consensus size: 8 37149836 ATGAATCAGC 37149846 AAAAGCCA 1 AAAAGCCA * 37149854 AAATGCCA 1 AAAAGCCA 37149862 AAAAGCCA 1 AAAAGCCA * 37149870 AAAAGCTA 1 AAAAGCCA * 37149878 AAATGCCA 1 AAAAGCCA 37149886 AAAAG 1 AAAAG 37149891 TCGAAAGTTG Statistics Matches: 31, Mismatches: 6, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 8 31 1.00 ACGTcount: A:0.60, C:0.20, G:0.13, T:0.07 Consensus pattern (8 bp): AAAAGCCA Found at i:37150035 original size:9 final size:9 Alignment explanation
Indices: 37149999--37150037 Score: 51 Period size: 9 Copynumber: 4.2 Consensus size: 9 37149989 GTTGAGAATT 37149999 GGCCAAATG 1 GGCCAAATG 37150008 GGCCGAAATG 1 GGCC-AAATG * 37150018 GGCTAAATG 1 GGCCAAATG * 37150027 GGCCTAATG 1 GGCCAAATG 37150036 GG 1 GG 37150038 TTGTTGGGCC Statistics Matches: 26, Mismatches: 3, Indels: 2 0.84 0.10 0.06 Matches are distributed among these distances: 9 18 0.69 10 8 0.31 ACGTcount: A:0.28, C:0.18, G:0.38, T:0.15 Consensus pattern (9 bp): GGCCAAATG Found at i:37150145 original size:29 final size:29 Alignment explanation
Indices: 37150113--37150225 Score: 138 Period size: 29 Copynumber: 3.9 Consensus size: 29 37150103 GCATGAATAT ** 37150113 AATATGATTTGGGCCTAATGGGCCATAAG 1 AATATGAACTGGGCCTAATGGGCCATAAG 37150142 AATATGAACTGGGCCTAATGGGCCATAAG 1 AATATGAACTGGGCCTAATGGGCCATAAG * * ** 37150171 AATATGAACTCGGCCAAATGGGCCATTTG 1 AATATGAACTGGGCCTAATGGGCCATAAG * * * 37150200 AATAAG-ATTGGGCCTAGTGGGCCATA 1 AATATGAACTGGGCCTAATGGGCCATA 37150226 TGCATGTATG Statistics Matches: 72, Mismatches: 12, Indels: 1 0.85 0.14 0.01 Matches are distributed among these distances: 28 15 0.21 29 57 0.79 ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24 Consensus pattern (29 bp): AATATGAACTGGGCCTAATGGGCCATAAG Found at i:37167375 original size:68 final size:67 Alignment explanation
Indices: 37167303--37167452 Score: 171 Period size: 67 Copynumber: 2.2 Consensus size: 67 37167293 CATCATGTGT * * * * 37167303 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC 1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC 37167365 ATGTAG 62 ATGTAG ** * * 37167371 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT 1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT 37167436 AG 66 AG 37167438 ACAAGAGAGCTACGA 1 ACAAGAGAGCTACGA 37167453 GATAAACTGG Statistics Matches: 70, Mismatches: 9, Indels: 7 0.81 0.10 0.08 Matches are distributed among these distances: 64 20 0.29 65 7 0.10 66 4 0.06 67 26 0.37 68 13 0.19 ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21 Consensus pattern (67 bp): ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT AG Found at i:37167408 original size:64 final size:64 Alignment explanation
Indices: 37167327--37167510 Score: 194 Period size: 67 Copynumber: 2.8 Consensus size: 64 37167317 AGACATTATG * * 37167327 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT 1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA * * * * * * 37167391 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT 1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT 37167456 AA 63 AA * * * * 37167458 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC 1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC 37167511 CGAACTATAT Statistics Matches: 98, Mismatches: 17, Indels: 11 0.78 0.13 0.09 Matches are distributed among these distances: 62 1 0.01 63 19 0.19 64 21 0.21 65 8 0.08 66 16 0.16 67 31 0.32 68 2 0.02 ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23 Consensus pattern (64 bp): ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA Found at i:37171319 original size:30 final size:30 Alignment explanation
Indices: 37171234--37171321 Score: 90 Period size: 30 Copynumber: 2.9 Consensus size: 30 37171224 TAAGCTAAAA * * 37171234 TGAGCTAAGCTTTAGC-CCTTAAGCTAAAGT 1 TGAGCTAAGATTTAGCTCC-TAAGCTGAAGT * 37171264 TGAGCTGAGATTATA-CTCCTAAGCTGAAGT 1 TGAGCTAAGATT-TAGCTCCTAAGCTGAAGT * * * 37171294 TGAGCTAAGGTTTAGCTCGTGAGCTGAA 1 TGAGCTAAGATTTAGCTCCTAAGCTGAA 37171322 TATAAGCTAG Statistics Matches: 48, Mismatches: 7, Indels: 6 0.79 0.11 0.10 Matches are distributed among these distances: 29 2 0.04 30 42 0.88 31 4 0.08 ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30 Consensus pattern (30 bp): TGAGCTAAGATTTAGCTCCTAAGCTGAAGT Found at i:37175926 original size:13 final size:13 Alignment explanation
Indices: 37175908--37175932 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 37175898 TAACCTACAA 37175908 AATTAAATAACAT 1 AATTAAATAACAT 37175921 AATTAAATAACA 1 AATTAAATAACA 37175933 CACAACTATT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28 Consensus pattern (13 bp): AATTAAATAACAT Found at i:37176186 original size:10 final size:10 Alignment explanation
Indices: 37176153--37176208 Score: 51 Period size: 10 Copynumber: 5.5 Consensus size: 10 37176143 AAAAAGGAAT * 37176153 GAGCTGAAAC 1 GAGCTCAAAC 37176163 GAGCT-AAATTC 1 GAGCTCAAA--C 37176174 GAGCTCAAAC 1 GAGCTCAAAC * 37176184 GAGCTAAAAC 1 GAGCTCAAAC * * 37176194 AAGCTCAAAT 1 GAGCTCAAAC 37176204 GAGCT 1 GAGCT 37176209 GATGGGAACT Statistics Matches: 38, Mismatches: 5, Indels: 6 0.78 0.10 0.12 Matches are distributed among these distances: 9 3 0.08 10 26 0.68 11 6 0.16 12 3 0.08 ACGTcount: A:0.41, C:0.21, G:0.21, T:0.16 Consensus pattern (10 bp): GAGCTCAAAC Found at i:37176200 original size:20 final size:21 Alignment explanation
Indices: 37176154--37176208 Score: 67 Period size: 21 Copynumber: 2.7 Consensus size: 21 37176144 AAAAGGAATG * * * 37176154 AGCTGAAACGAGCTAAATTCG 1 AGCTCAAACGAGCTAAATACA 37176175 AGCTCAAACGAGCTAAA-ACA 1 AGCTCAAACGAGCTAAATACA * 37176195 AGCTCAAATGAGCT 1 AGCTCAAACGAGCT 37176209 GATGGGAACT Statistics Matches: 30, Mismatches: 4, Indels: 1 0.86 0.11 0.03 Matches are distributed among these distances: 20 14 0.47 21 16 0.53 ACGTcount: A:0.42, C:0.22, G:0.20, T:0.16 Consensus pattern (21 bp): AGCTCAAACGAGCTAAATACA Found at i:37177572 original size:14 final size:14 Alignment explanation
Indices: 37177564--37177603 Score: 55 Period size: 14 Copynumber: 2.9 Consensus size: 14 37177554 CGAACGGAAT 37177564 GGTAGGAACAAAAG 1 GGTAGGAACAAAAG 37177578 GGTAGGAAC-AAAG 1 GGTAGGAACAAAAG * 37177591 GGATATGAACAAA 1 GG-TAGGAACAAA 37177604 TTGGTCGATT Statistics Matches: 23, Mismatches: 1, Indels: 3 0.85 0.04 0.11 Matches are distributed among these distances: 13 6 0.26 14 15 0.65 15 2 0.09 ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10 Consensus pattern (14 bp): GGTAGGAACAAAAG Found at i:37179726 original size:5 final size:5 Alignment explanation
Indices: 37179716--37179772 Score: 55 Period size: 5 Copynumber: 11.0 Consensus size: 5 37179706 CTCTTGCCTC * 37179716 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT 1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT 37179763 TCTTT TCTTT 1 TCTTT TCTTT 37179773 GTTTTCTCTT Statistics Matches: 44, Mismatches: 2, Indels: 12 0.76 0.03 0.21 Matches are distributed among these distances: 4 4 0.09 5 29 0.66 6 6 0.14 7 5 0.11 ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77 Consensus pattern (5 bp): TCTTT Found at i:37179756 original size:15 final size:14 Alignment explanation
Indices: 37179716--37179772 Score: 60 Period size: 16 Copynumber: 3.7 Consensus size: 14 37179706 CTCTTGCCTC * 37179716 TCTTTTCTTTTTATT 1 TCTTTTCTTTTT-CT 37179731 TCATTTTCTTTTTCT 1 TC-TTTTCTTTTTCT 37179746 TCTTTTGCTTTTTCTTT 1 TCTTTT-CTTTTTC--T 37179763 TCTTTTCTTT 1 TCTTTTCTTT 37179773 GTTTTCTCTT Statistics Matches: 37, Mismatches: 1, Indels: 7 0.82 0.02 0.16 Matches are distributed among these distances: 14 4 0.11 15 12 0.32 16 14 0.38 17 7 0.19 ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77 Consensus pattern (14 bp): TCTTTTCTTTTTCT Found at i:37179773 original size:21 final size:21 Alignment explanation
Indices: 37179716--37179783 Score: 61 Period size: 21 Copynumber: 3.2 Consensus size: 21 37179706 CTCTTGCCTC * * 37179716 TCTTTTCTTTT-TATTTCATTT 1 TCTTTTCTTTTCT-TTGCTTTT * 37179737 TCTTTT-TCTTCTTTTGCTTTT 1 TCTTTTCTTTTC-TTTGCTTTT 37179758 TCTTTTCTTTTCTTTG-TTTT 1 TCTTTTCTTTTCTTTGCTTTT 37179778 CTCTTT 1 -TCTTT 37179784 ACAAGAATGT Statistics Matches: 39, Mismatches: 4, Indels: 8 0.76 0.08 0.16 Matches are distributed among these distances: 20 7 0.18 21 27 0.69 22 5 0.13 ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76 Consensus pattern (21 bp): TCTTTTCTTTTCTTTGCTTTT Found at i:37180731 original size:11 final size:11 Alignment explanation
Indices: 37180717--37180748 Score: 64 Period size: 11 Copynumber: 2.9 Consensus size: 11 37180707 TTTTCAAAAT 37180717 TTTTTTTTGAA 1 TTTTTTTTGAA 37180728 TTTTTTTTGAA 1 TTTTTTTTGAA 37180739 TTTTTTTTGA 1 TTTTTTTTGA 37180749 CTTGTATAAC Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 21 1.00 ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75 Consensus pattern (11 bp): TTTTTTTTGAA Found at i:37182454 original size:30 final size:30 Alignment explanation
Indices: 37182420--37182516 Score: 90 Period size: 30 Copynumber: 3.2 Consensus size: 30 37182410 TAAACTAAAA 37182420 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT 1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT * * * * * * 37182450 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT 1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT * * 37182480 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG- 1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT 37182510 TGAGCTA 1 TGAGCTA 37182517 GGAGTGAGCT Statistics Matches: 50, Mismatches: 14, Indels: 6 0.71 0.20 0.09 Matches are distributed among these distances: 29 2 0.04 30 42 0.84 31 6 0.12 ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28 Consensus pattern (30 bp): TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT Done.