Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 130 of 284
Found at i:43488618 original size:20 final size:20
Alignment explanation
Indices: 43488595--43488652 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
43488585 TTAGGAATAA
*
43488595 TGGTGAATATTTAGATATTT
1 TGGTGAATATTTAGAAATTT
* * *
43488615 TGGTAAATTTTTCGAAATTT
1 TGGTGAATATTTAGAAATTT
*
43488635 T-GTGAAATCTTTAGAAAT
1 TGGTG-AATATTTAGAAAT
43488653 ATTAGTAATA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
19 2 0.07
20 28 0.93
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (20 bp):
TGGTGAATATTTAGAAATTT
Found at i:43488969 original size:21 final size:23
Alignment explanation
Indices: 43488945--43488986 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
43488935 TATATACATG
43488945 GATAGGTTTT-AATG-TAATTAT
1 GATAGGTTTTAAATGTTAATTAT
*
43488966 GATAGTTTTTAAATGTTAATT
1 GATAGGTTTTAAATGTTAATT
43488987 TAGTAATTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 4 0.22
23 5 0.28
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (23 bp):
GATAGGTTTTAAATGTTAATTAT
Found at i:43491478 original size:40 final size:40
Alignment explanation
Indices: 43491419--43491506 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 40
43491409 TACTCTTTAT
* * * **
43491419 ATATTTTGGTAAATCTTTAGAGATATTGGTAAATCCTTAG
1 ATATGTTGGTAAAGCTTTAGAAATATTGGTAAAGACTTAG
* * *
43491459 ATATGTTGGTAAAGGTTTAGAAATTTTGTTAAAGACTTAG
1 ATATGTTGGTAAAGCTTTAGAAATATTGGTAAAGACTTAG
*
43491499 ATGTGTTG
1 ATATGTTG
43491507 ACCAAGTATA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.42
Consensus pattern (40 bp):
ATATGTTGGTAAAGCTTTAGAAATATTGGTAAAGACTTAG
Found at i:43491479 original size:20 final size:20
Alignment explanation
Indices: 43491412--43491471 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
43491402 TATTGGATAC
* *
43491412 TCTTTATATATTTTGGTAAA
1 TCTTTAGATATATTGGTAAA
*
43491432 TCTTTAGAGATATTGGTAAA
1 TCTTTAGATATATTGGTAAA
* *
43491452 TCCTTAGATATGTTGGTAAA
1 TCTTTAGATATATTGGTAAA
43491472 GGTTTAGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.45
Consensus pattern (20 bp):
TCTTTAGATATATTGGTAAA
Found at i:43491755 original size:40 final size:40
Alignment explanation
Indices: 43491668--43491771 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
43491658 TAAAAAAAAA
* **
43491668 TTGTAAAGTCCTTAGAAATATTGGAAAATCTTTGGATATTT
1 TTGTAAA-TCCTTAGAAATATTGGAAAATCCTTAAATATTT
** *
43491709 CGGTAAATCCTTCA-AAATATTGGAAAATCCTTAAATCTTT
1 TTGTAAATCCTT-AGAAATATTGGAAAATCCTTAAATATTT
* *
43491749 TTGTAAATGCTTAGAAATTTTGG
1 TTGTAAATCCTTAGAAATATTGG
43491772 TATGTGTTTA
Statistics
Matches: 51, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
39 1 0.02
40 44 0.86
41 6 0.12
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (40 bp):
TTGTAAATCCTTAGAAATATTGGAAAATCCTTAAATATTT
Found at i:43491976 original size:20 final size:20
Alignment explanation
Indices: 43491953--43492021 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 20
43491943 GAAATATTGT
*
43491953 TAAATTCTTAGATAGTTTAG
1 TAAATTCTTAGATAATTTAG
* * * *
43491973 TAAATCCTTAAATATTTTGG
1 TAAATTCTTAGATAATTTAG
* *
43491993 TAATTTATTAGA-AATATTAG
1 TAAATTCTTAGATAAT-TTAG
43492013 TAAATTCTT
1 TAAATTCTT
43492022 GGAAATTTTT
Statistics
Matches: 36, Mismatches: 12, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
19 2 0.06
20 34 0.94
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.46
Consensus pattern (20 bp):
TAAATTCTTAGATAATTTAG
Found at i:43492004 original size:40 final size:40
Alignment explanation
Indices: 43491933--43492027 Score: 95
Period size: 40 Copynumber: 2.4 Consensus size: 40
43491923 AGACGCTAAT
* * *
43491933 TAAATCCTTAGAAATATTGTTAAATTCTTAGATAGT-TTAG
1 TAAATCCTTAGAAATATTGGTAAATTATTAGA-AATATTAG
* *
43491973 TAAATCCTTA-AATATTTTGGTAATTTATTAGAAATATTAG
1 TAAATCCTTAGAA-ATATTGGTAAATTATTAGAAATATTAG
* *
43492013 TAAATTCTTGGAAAT
1 TAAATCCTTAGAAAT
43492028 TTTTGGAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
39 4 0.09
40 39 0.87
41 2 0.04
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.43
Consensus pattern (40 bp):
TAAATCCTTAGAAATATTGGTAAATTATTAGAAATATTAG
Found at i:43492053 original size:20 final size:21
Alignment explanation
Indices: 43492023--43492063 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
43492013 TAAATTCTTG
43492023 GAAATTTTTGGAAAAGGCTTA
1 GAAATTTTTGGAAAAGGCTTA
43492044 GAAA-TTTTGGAAAAGGCTTA
1 GAAATTTTTGGAAAAGGCTTA
43492064 AAGGTGTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (21 bp):
GAAATTTTTGGAAAAGGCTTA
Found at i:43498518 original size:23 final size:24
Alignment explanation
Indices: 43498465--43498518 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
43498455 TAAAGAAAAT
* *
43498465 TAATTTCACATTCATAAACTAGCA
1 TAATTTCACAATCATAAACTACCA
* *
43498489 TAA-TTCACAATCAT-AATTACCC
1 TAATTTCACAATCATAAACTACCA
43498511 TAATTTCA
1 TAATTTCA
43498519 TCTGTATACG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 8 0.32
23 14 0.56
24 3 0.12
ACGTcount: A:0.41, C:0.22, G:0.02, T:0.35
Consensus pattern (24 bp):
TAATTTCACAATCATAAACTACCA
Found at i:43500152 original size:18 final size:18
Alignment explanation
Indices: 43500129--43500174 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
43500119 CCAGAAATAT
43500129 GGCGTATGATGCCACATA
1 GGCGTATGATGCCACATA
* *
43500147 GGCGTATTATGCCATATA
1 GGCGTATGATGCCACATA
43500165 GGCGTATGAT
1 GGCGTATGAT
43500175 CGCACGTGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (18 bp):
GGCGTATGATGCCACATA
Found at i:43500542 original size:27 final size:27
Alignment explanation
Indices: 43500512--43500612 Score: 130
Period size: 27 Copynumber: 3.7 Consensus size: 27
43500502 CCCCAGATTA
* *
43500512 TAAAATTACCAAAATACCCCCGATTTG
1 TAAAATTACCGAAATACCCTCGATTTG
*
43500539 TAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTCGATTTG
* * **
43500566 TAAAATTACTGAAATACCCTTGAAGTG
1 TAAAATTACCGAAATACCCTCGATTTG
*
43500593 TAAAATTATCGAAATACCCT
1 TAAAATTACCGAAATACCCT
43500613 GTAAGGTAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGATTTG
Found at i:43501101 original size:33 final size:30
Alignment explanation
Indices: 43501028--43501112 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 30
43501018 TGCATTACAC
* *
43501028 TGTACTGATACTGTATTGGGCTTAGGCCCA
1 TGTACTGATACTGTATAGGGCTAAGGCCCA
* *
43501058 --CACTGTTACTGTATAGGGCTAAGGCCCAGA
1 TGTACTGATACTGTATAGGGCTAAGGCCC--A
*
43501088 TTGTACTGATACTGTATAGCGCTAA
1 -TGTACTGATACTGTATAGGGCTAA
43501113 ATGACCGACT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
28 23 0.53
30 1 0.02
33 19 0.44
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (30 bp):
TGTACTGATACTGTATAGGGCTAAGGCCCA
Found at i:43501608 original size:33 final size:33
Alignment explanation
Indices: 43501571--43501664 Score: 152
Period size: 33 Copynumber: 2.8 Consensus size: 33
43501561 CCCACACTGT
*
43501571 TACTGTGTAGGGCTAAGGCCCAGACTATACTCA
1 TACTGTATAGGGCTAAGGCCCAGACTATACTCA
* *
43501604 TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
1 TACTGTATAGGGCTAAGGCCCAGACTATACTCA
*
43501637 TACTGTATAGGGCTAAAGCCCAGACTAT
1 TACTGTATAGGGCTAAGGCCCAGACTAT
43501665 TTTGCATATT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (33 bp):
TACTGTATAGGGCTAAGGCCCAGACTATACTCA
Found at i:43504405 original size:17 final size:18
Alignment explanation
Indices: 43504373--43504406 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
43504363 CGTTGGGCTA
*
43504373 AATGGGCTGTGTGGGCCC
1 AATGGGCTGCGTGGGCCC
43504391 AATGGGCT-CGTGGGCC
1 AATGGGCTGCGTGGGCC
43504407 TCACATTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.12, C:0.24, G:0.44, T:0.21
Consensus pattern (18 bp):
AATGGGCTGCGTGGGCCC
Found at i:43504644 original size:26 final size:27
Alignment explanation
Indices: 43504615--43504688 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
43504605 GGTTGTTAAG
43504615 ACCCTAGATTGTAAAATTACCT-AAAT
1 ACCCTAGATTGTAAAATTACCTAAAAT
*
43504641 ACCCTCAGTTTGTAAAATTA-CTAAAAT
1 ACCCT-AGATTGTAAAATTACCTAAAAT
* * *
43504668 ATCCTTGAAGTGTAAAATTAC
1 ACCCTAG-ATTGTAAAATTAC
43504689 TGAATTACCC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 8 0.21
27 31 0.79
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
ACCCTAGATTGTAAAATTACCTAAAAT
Found at i:43504654 original size:27 final size:25
Alignment explanation
Indices: 43504615--43504698 Score: 78
Period size: 27 Copynumber: 3.2 Consensus size: 25
43504605 GGTTGTTAAG
43504615 ACCCTAGATTGTAAAATTACCTAAAT
1 ACCCTAGATTGTAAAATTA-CTAAAT
*
43504641 ACCCTCAGTTTGTAAAATTACTAAAAT
1 ACCCT-AGATTGTAAAATTACT-AAAT
* * * *
43504668 ATCCTTGAAGTGTAAAATTACTGAATT
1 ACCCTAG-ATTGTAAAATTACT-AAAT
43504695 ACCC
1 ACCC
43504699 CTGTAGGGTA
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
26 8 0.17
27 39 0.83
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (25 bp):
ACCCTAGATTGTAAAATTACTAAAT
Found at i:43504709 original size:27 final size:27
Alignment explanation
Indices: 43504652--43504712 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
43504642 CCCTCAGTTT
* * *
43504652 GTAAAATTACTAAAATATCCTTGAAGT
1 GTAAAATTACTAAAATACCCCTGAAGG
* * *
43504679 GTAAAATTACTGAATTACCCCTGTAGG
1 GTAAAATTACTAAAATACCCCTGAAGG
43504706 GTAAAAT
1 GTAAAAT
43504713 GAATGTTTTG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (27 bp):
GTAAAATTACTAAAATACCCCTGAAGG
Found at i:43505180 original size:28 final size:27
Alignment explanation
Indices: 43505148--43505231 Score: 78
Period size: 33 Copynumber: 2.9 Consensus size: 27
43505138 AGACTATATT
*
43505148 GGGCTTAGGCCCACACTGTTACTGTATA
1 GGGCTAAGGCCCACACTG-TACTGTATA
*
43505176 GGGCTAAAGCCCAGACTGTACTGATACTGTATA
1 GGGCTAAGGCCC--AC---ACTG-TACTGTATA
*
43505209 GGGCTAAGGCCCAGACTGTACTG
1 GGGCTAAGGCCCACACTGTACTG
43505232 ATACTATATA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
27 5 0.11
28 14 0.30
30 2 0.04
31 1 0.02
33 24 0.52
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (27 bp):
GGGCTAAGGCCCACACTGTACTGTATA
Found at i:43505204 original size:33 final size:33
Alignment explanation
Indices: 43505162--43505260 Score: 162
Period size: 33 Copynumber: 3.0 Consensus size: 33
43505152 TTAGGCCCAC
*
43505162 ACTGTTACTGTATAGGGCTAAAGCCCAGACTGT
1 ACTGATACTGTATAGGGCTAAAGCCCAGACTGT
*
43505195 ACTGATACTGTATAGGGCTAAGGCCCAGACTGT
1 ACTGATACTGTATAGGGCTAAAGCCCAGACTGT
* *
43505228 ACTGATACTATATAGGGCTAAAGCCCAAACTGT
1 ACTGATACTGTATAGGGCTAAAGCCCAGACTGT
43505261 TTTGCATATT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 61 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (33 bp):
ACTGATACTGTATAGGGCTAAAGCCCAGACTGT
Found at i:43505227 original size:61 final size:63
Alignment explanation
Indices: 43505129--43505260 Score: 160
Period size: 61 Copynumber: 2.1 Consensus size: 63
43505119 ATTGCATTAC
* * * *
43505129 ACTGTACTGAGACTATATTGGGCTTAGGCCCACACTG-T-TACTGTATAGGGCTAAAGCCCAG
1 ACTGTACTGAGACTATATAGGGCTAAGGCCCACACTGATATACTATATAGGGCTAAAGCCCAA
* * *
43505190 ACTGTACTGATACTGTATAGGGCTAAGGCCCAGACTGTACTGATACTATATAGGGCTAAAGCCCA
1 ACTGTACTGAGACTATATAGGGCTAAGGCCCACACTG-A-T-ATACTATATAGGGCTAAAGCCCA
43505255 A
63 A
43505256 ACTGT
1 ACTGT
43505261 TTTGCATATT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
61 32 0.54
64 1 0.02
66 26 0.44
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (63 bp):
ACTGTACTGAGACTATATAGGGCTAAGGCCCACACTGATATACTATATAGGGCTAAAGCCCAA
Found at i:43510138 original size:43 final size:42
Alignment explanation
Indices: 43510091--43510247 Score: 131
Period size: 42 Copynumber: 3.7 Consensus size: 42
43510081 AACATATACA
*
43510091 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAA-ATCG
* * * * *
43510134 ATGCC-ACTATCCCAGACAAGGTCTTACACGAAATC-AGATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAATCAAAAT-CG
* * * * *
43510176 ATGCCGATGTCCCAGACATGGTCTTATATGTAAAAT-AGAATTCA
1 ATGCCAACGTCCCAGACATGGTCTTACATGT--AATCA-AAATCG
*
43510220 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
43510248 CGAAATCACA
Statistics
Matches: 88, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
41 2 0.02
42 28 0.32
43 28 0.32
44 28 0.32
45 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAAATCG
Found at i:43512176 original size:23 final size:23
Alignment explanation
Indices: 43512134--43512177 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
43512124 GATGTGTAAT
*
43512134 GCTCCTTTTAATTGATAATAACA
1 GCTCCTTTTAATTGAGAATAACA
43512157 GCTCCTTTTAA-TGAAGAATAA
1 GCTCCTTTTAATTG-AGAATAA
43512178 TGTTCCCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (23 bp):
GCTCCTTTTAATTGAGAATAACA
Found at i:43512319 original size:23 final size:21
Alignment explanation
Indices: 43512279--43512337 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 21
43512269 GACACTTGAA
43512279 ATTAAACACATTACAACAGACAT
1 ATTAAACACATTA-AACA-ACAT
43512302 ATTAAACACATTTAAAC-ACAT
1 ATTAAACACA-TTAAACAACAT
43512323 A--AAACACATTAAACA
1 ATTAAACACATTAAACA
43512338 CTTAACTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
18 6 0.18
19 7 0.21
21 5 0.15
23 13 0.38
24 3 0.09
ACGTcount: A:0.56, C:0.20, G:0.02, T:0.22
Consensus pattern (21 bp):
ATTAAACACATTAAACAACAT
Found at i:43512329 original size:9 final size:9
Alignment explanation
Indices: 43512279--43512342 Score: 58
Period size: 9 Copynumber: 6.6 Consensus size: 9
43512269 GACACTTGAA
43512279 ATTAAACAC
1 ATTAAACAC
43512288 ATTACAACAGAC
1 ATTA-AAC--AC
43512300 ATATTAAACAC
1 --ATTAAACAC
43512311 ATTTAAACAC
1 A-TTAAACAC
*
43512321 ATAAAACAC
1 ATTAAACAC
43512330 ATTAAACAC
1 ATTAAACAC
43512339 -TTAA
1 ATTAA
43512343 CTTAAATAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
8 4 0.09
9 20 0.43
10 12 0.26
11 2 0.04
12 2 0.04
13 3 0.06
14 4 0.09
ACGTcount: A:0.55, C:0.20, G:0.02, T:0.23
Consensus pattern (9 bp):
ATTAAACAC
Found at i:43512426 original size:19 final size:19
Alignment explanation
Indices: 43512399--43512491 Score: 77
Period size: 19 Copynumber: 5.1 Consensus size: 19
43512389 TTATTCCAGC
* *
43512399 AACTAAATTAACTATGATG
1 AACTTAATTAACTAAGATG
*
43512418 AACTTAATTAACTAACATG
1 AACTTAATTAACTAAGATG
* * * *
43512437 AA--TAATTTATTCCAG--C
1 AACTTAATTAACT-AAGATG
43512453 AACTTAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
*
43512472 AACTCAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
43512491 A
1 A
43512492 GTAATTTATT
Statistics
Matches: 56, Mismatches: 13, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
16 2 0.04
17 9 0.16
18 8 0.14
19 37 0.66
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (19 bp):
AACTTAATTAACTAAGATG
Found at i:43512449 original size:54 final size:54
Alignment explanation
Indices: 43512389--43512517 Score: 213
Period size: 54 Copynumber: 2.4 Consensus size: 54
43512379 CATCATTAAA
* * *
43512389 TTATTCCAGCAACTAAATTAACTATGATGAACTTAATTAACTAACATGAATAAT
1 TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAACATGAATAAT
* *
43512443 TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAACATGAATAAT
43512497 TTATTCCAGCAACTTAATTAA
1 TTATTCCAGCAACTTAATTAA
43512518 TTGAACTAAG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.33
Consensus pattern (54 bp):
TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAACATGAATAAT
Found at i:43517784 original size:20 final size:22
Alignment explanation
Indices: 43517756--43517802 Score: 71
Period size: 20 Copynumber: 2.2 Consensus size: 22
43517746 CAAGCTACCA
*
43517756 AAAACAATAAAGAA-TGA-AAG
1 AAAATAATAAAGAATTGAGAAG
43517776 AAAATAATAAAGAATTGAGAAG
1 AAAATAATAAAGAATTGAGAAG
43517798 AAAAT
1 AAAAT
43517803 CATCCCTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 13 0.54
21 3 0.12
22 8 0.33
ACGTcount: A:0.68, C:0.02, G:0.15, T:0.15
Consensus pattern (22 bp):
AAAATAATAAAGAATTGAGAAG
Found at i:43518732 original size:51 final size:51
Alignment explanation
Indices: 43518638--43518747 Score: 143
Period size: 51 Copynumber: 2.1 Consensus size: 51
43518628 CTAAAATGGT
*
43518638 GAAAATGGAGAAATGAGAAACATTTGGAAATGATAATTTTTTTCTCAAAAAA
1 GAAAATGGAGAAATGAGAAACATTTGGAAATGA-AATTATTTTCTCAAAAAA
* * *
43518690 GAAAATGGAGAAATG-GAATCATTTGGAAATG-AATGTGATTTTCTCCAAAAT
1 GAAAATGGAGAAATGAGAAACATTTGGAAATGAAAT-T-ATTTTCTCAAAAAA
43518741 GAAAATG
1 GAAAATG
43518748 ACTTGAAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
49 3 0.06
50 1 0.02
51 33 0.63
52 15 0.29
ACGTcount: A:0.45, C:0.06, G:0.20, T:0.28
Consensus pattern (51 bp):
GAAAATGGAGAAATGAGAAACATTTGGAAATGAAATTATTTTCTCAAAAAA
Found at i:43526920 original size:93 final size:93
Alignment explanation
Indices: 43526808--43526979 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
43526798 CGCCCATAAG
* *
43526808 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
43526873 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
43526901 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
43526966 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
43526980 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:43526976 original size:46 final size:46
Alignment explanation
Indices: 43526801--43526976 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
43526791 TGTAACCCGC
* * *
43526801 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
43526847 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
43526897 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
43526940 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
43526977 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:43529039 original size:14 final size:14
Alignment explanation
Indices: 43528992--43529039 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
43528982 GTACGAATGG
43528992 AATGGTAGGAACAA
1 AATGGTAGGAACAA
*
43529006 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
43529020 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
43529034 ATTGGT
1 AATGGT
43529040 CGGTTTAGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.46, C:0.06, G:0.29, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:43532817 original size:40 final size:40
Alignment explanation
Indices: 43532762--43533236 Score: 749
Period size: 40 Copynumber: 11.9 Consensus size: 40
43532752 ATTGAGAGTT
* *
43532762 ATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
43532802 ATATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
43532842 ATTTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
43532882 ATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
43532922 TTATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * *
43532962 TTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
43533002 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
43533042 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
43533082 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGG-G
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GGTG
43533122 ATATATCCGGGCTAAGTCCC-AAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * *
43533161 TTATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * *
43533201 ATATATCTGGGCTAAATCTCGAAG-GCATTCGTGCTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
43533237 AAATTATAAG
Statistics
Matches: 405, Mismatches: 27, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
38 2 0.00
39 45 0.11
40 356 0.88
41 2 0.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
Found at i:43533310 original size:29 final size:28
Alignment explanation
Indices: 43533275--43533399 Score: 110
Period size: 29 Copynumber: 4.4 Consensus size: 28
43533265 CTTCAACCAA
* *
43533275 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
43533304 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
* *
43533332 GCACTATGTGTGTGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * *
43533361 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
43533389 GCACTATGTGT
1 GCACTATGTGT
43533400 ACGAAATCAT
Statistics
Matches: 77, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
28 34 0.44
29 43 0.56
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:43533335 original size:57 final size:57
Alignment explanation
Indices: 43533245--43533399 Score: 220
Period size: 57 Copynumber: 2.7 Consensus size: 57
43533235 TGAAATTATA
* * * * * *
43533245 AGGCACTGTGTGTGCAAGCTCTTCAACCAAGCACTATGTGTGCCAGATCAGTAGTTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAATTG
** **
43533302 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGTGAGATTGGTAATTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAATTG
43533359 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGT
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGT
43533400 ACGAAATCAT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 88 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (57 bp):
AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAATTG
Found at i:43533394 original size:28 final size:28
Alignment explanation
Indices: 43533304--43533399 Score: 131
Period size: 28 Copynumber: 3.4 Consensus size: 28
43533294 AGTAGTTGAG
43533304 GCACTATGTGTGCGAGTTCTTCAATCGA
1 GCACTATGTGTGCGAGTTCTTCAATCGA
* ** *
43533332 GCACTATGTGTGTGAGATTGGT-AATTGA
1 GCACTATGTGTGCGAG-TTCTTCAATCGA
43533360 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTTCAATCGA
43533389 GCACTATGTGT
1 GCACTATGTGT
43533400 ACGAAATCAT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
28 34 0.60
29 23 0.40
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTCAATCGA
Found at i:43536688 original size:27 final size:27
Alignment explanation
Indices: 43536658--43536835 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
43536648 ATATTGAGTC
* * * *
43536658 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
43536685 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
43536712 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
43536740 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
43536767 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
43536794 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
43536821 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43536836 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:43536797 original size:82 final size:81
Alignment explanation
Indices: 43536679--43536834 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
43536669 TGCTATATAA
* *
43536679 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
43536744 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
43536761 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
43536825 CACTTAGTGC
65 CACTTAGTGC
43536835 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:43544288 original size:88 final size:91
Alignment explanation
Indices: 43544118--43544322 Score: 299
Period size: 88 Copynumber: 2.3 Consensus size: 91
43544108 TTGATTTTAG
* *
43544118 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAA
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAA
* * *
43544183 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
* *
43544210 TAAATTCATATAAGAAAATTTATTATCAATAATTTTATGAAA-T-TATATC-TTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAAA
43544272 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
* *
43544298 CAAATTCATATAAGATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
43544323 GTTATAATTA
Statistics
Matches: 104, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
88 58 0.56
89 6 0.06
90 1 0.01
91 23 0.22
92 16 0.15
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAAA
TGTAATAATAATTATTTTAAATTATA
Found at i:43544504 original size:25 final size:26
Alignment explanation
Indices: 43544472--43544526 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
43544462 TTATTAAATT
*
43544472 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
43544497 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
43544522 A-ATAT
1 ATATAT
43544527 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:43544713 original size:44 final size:45
Alignment explanation
Indices: 43544664--43544758 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
43544654 TTACACCTCT
* *
43544664 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
43544708 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
43544753 ATTACA
1 ATTACA
43544759 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:43544758 original size:16 final size:16
Alignment explanation
Indices: 43544739--43544806 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
43544729 GATTTGCTAT
* *
43544739 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
43544755 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
43544771 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
43544787 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
43544803 TACA
1 TACA
43544807 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:43553639 original size:25 final size:25
Alignment explanation
Indices: 43553611--43553671 Score: 104
Period size: 25 Copynumber: 2.4 Consensus size: 25
43553601 TCTTTTATAA
*
43553611 ACTTTAAATTAAGAATTCTATTAGG
1 ACTTTAAATTAAGAATTCTACTAGG
43553636 ACTTTAAATTAAGAATTCTACTAGG
1 ACTTTAAATTAAGAATTCTACTAGG
*
43553661 TCTTTAAATTA
1 ACTTTAAATTA
43553672 GGACTTTCCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (25 bp):
ACTTTAAATTAAGAATTCTACTAGG
Found at i:43558285 original size:25 final size:25
Alignment explanation
Indices: 43558195--43558273 Score: 140
Period size: 25 Copynumber: 3.2 Consensus size: 25
43558185 TTTTTATAAT
* *
43558195 CTTTAAATTAGGAATTCTATTAAGA
1 CTTTAAATTAGGAATTCTACTAGGA
43558220 CTTTAAATTAGGAATTCTACTAGGA
1 CTTTAAATTAGGAATTCTACTAGGA
43558245 CTTTAAATTAGGAATTCTACTAGGA
1 CTTTAAATTAGGAATTCTACTAGGA
43558270 CTTT
1 CTTT
43558274 CCTTTTGTAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.39
Consensus pattern (25 bp):
CTTTAAATTAGGAATTCTACTAGGA
Found at i:43560120 original size:37 final size:37
Alignment explanation
Indices: 43560071--43560143 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
43560061 GATAGAAAGA
43560071 AAAAAAGAGAGAAAAATGGGCATGTTGCTGCCATTTG
1 AAAAAAGAGAGAAAAATGGGCATGTTGCTGCCATTTG
43560108 AAAAAAGAGAGAAAAATGGGCATGTTGCTGCCATTT
1 AAAAAAGAGAGAAAAATGGGCATGTTGCTGCCATTT
43560144 TTTAAATGAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.41, C:0.11, G:0.26, T:0.22
Consensus pattern (37 bp):
AAAAAAGAGAGAAAAATGGGCATGTTGCTGCCATTTG
Found at i:43563572 original size:32 final size:31
Alignment explanation
Indices: 43563535--43563594 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
43563525 ATTATTATTT
43563535 AATATTAATATAATTTTT-TTATATTTTTTGAA
1 AATATTAATAT-ATTTTTATT-TATTTTTTGAA
* *
43563567 AATATTTATGTATTTTTATTTATTTTTT
1 AATATTAATATATTTTTATTTATTTTTT
43563595 AGAATTAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 14 0.56
32 11 0.44
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (31 bp):
AATATTAATATATTTTTATTTATTTTTTGAA
Found at i:43564162 original size:21 final size:21
Alignment explanation
Indices: 43564137--43564178 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
43564127 GCAATACTAA
*
43564137 AATTTCTAATGGGATATTAAT
1 AATTTCTAATGGGAAATTAAT
*
43564158 AATTTCTAATGTGAAATTAAT
1 AATTTCTAATGGGAAATTAAT
43564179 TTTTTTACTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (21 bp):
AATTTCTAATGGGAAATTAAT
Found at i:43564426 original size:18 final size:18
Alignment explanation
Indices: 43564385--43564428 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
43564375 TACGAGTTAA
43564385 AAAATTTAATATCTATTT
1 AAAATTTAATATCTATTT
*
43564403 AGAAATTTCAATCTCT-TTT
1 A-AAATTT-AATATCTATTT
43564422 AAAATTT
1 AAAATTT
43564429 TGGTATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 7 0.30
19 10 0.43
20 6 0.26
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.48
Consensus pattern (18 bp):
AAAATTTAATATCTATTT
Found at i:43564572 original size:19 final size:20
Alignment explanation
Indices: 43564545--43564585 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
43564535 AAAATAAGTT
* *
43564545 ATATTTAAT-TGATATTGAA
1 ATATATAATGTGATATTAAA
43564564 ATATATAATGTGATATTAAA
1 ATATATAATGTGATATTAAA
43564584 AT
1 AT
43564586 TTATTTTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (20 bp):
ATATATAATGTGATATTAAA
Found at i:43568701 original size:123 final size:121
Alignment explanation
Indices: 43568557--43568809 Score: 407
Period size: 123 Copynumber: 2.1 Consensus size: 121
43568547 TGATTTTTTT
* * *
43568557 AATATATTTGTATAAAATTTTTTATATTGTTTCATATAATAAAATAAAAGTTGTTTTTAATATTT
1 AATATTTTTGTACAAAATTTTTTATATTGTTTCATATAATAAAATAAAAGTTGTTTTAAATATTT
*
43568622 TAATTGTAATTTAATTTTTATATTTTTAATAAAATAAAAGTTTTTTTTTGAATAAGGC
66 TAATTGTAATTTAATTTTTATATTTTTAATAAAATAAAA--TTTCTTTTGAATAAGGC
* * *
43568680 AATATTTTTGTACAAACTTTTTTATATTGTTTCATTTAATAAAATAAAATTTGTTTTAAATATTT
1 AATATTTTTGTACAAAATTTTTTATATTGTTTCATATAATAAAATAAAAGTTGTTTTAAATATTT
* *
43568745 TGATTGTAATTTACTTTTTATATTTTTAATAAAATAAAATTTCTTTTGAATAAGGC
66 TAATTGTAATTTAATTTTTATATTTTTAATAAAATAAAATTTCTTTTGAATAAGGC
43568801 AATATTTTT
1 AATATTTTT
43568810 AATAAAATAT
Statistics
Matches: 121, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
121 25 0.21
123 96 0.79
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (121 bp):
AATATTTTTGTACAAAATTTTTTATATTGTTTCATATAATAAAATAAAAGTTGTTTTAAATATTT
TAATTGTAATTTAATTTTTATATTTTTAATAAAATAAAATTTCTTTTGAATAAGGC
Found at i:43571506 original size:15 final size:15
Alignment explanation
Indices: 43571486--43571523 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
43571476 AACTTGGCAT
43571486 TTACTTGTCACTTTA
1 TTACTTGTCACTTTA
43571501 TTACTTGTCACTTTA
1 TTACTTGTCACTTTA
43571516 TTACTTGT
1 TTACTTGT
43571524 TGCGGTTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.08, T:0.55
Consensus pattern (15 bp):
TTACTTGTCACTTTA
Found at i:43576683 original size:35 final size:35
Alignment explanation
Indices: 43576637--43576832 Score: 239
Period size: 35 Copynumber: 5.6 Consensus size: 35
43576627 TACTATCTGT
* *
43576637 TTGGCGTGTTTCGGTTGGATTAGCTCTTATGAGTA
1 TTGGCGTGTTACGGTTGGATTAGCTCTTATGAGCA
* *
43576672 TTGGCGTGTTTCGGTTGGATTAGCTCTCATGAGCA
1 TTGGCGTGTTACGGTTGGATTAGCTCTTATGAGCA
* *
43576707 TTGGCGTGTTACGGTTGAATTAACTCTTATGAGCA
1 TTGGCGTGTTACGGTTGGATTAGCTCTTATGAGCA
* *
43576742 TTGGCGTGTCACGGTTGGACTAGCTCTTATGAGCA
1 TTGGCGTGTTACGGTTGGATTAGCTCTTATGAGCA
* * * * *
43576777 CTGGCATGTTACGGATGGATTAACTCCTATGAGCA
1 TTGGCGTGTTACGGTTGGATTAGCTCTTATGAGCA
* * * *
43576812 TCGACGTGTTATGGATGGATT
1 TTGGCGTGTTACGGTTGGATT
43576833 GATGATCTAC
Statistics
Matches: 139, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 139 1.00
ACGTcount: A:0.19, C:0.16, G:0.30, T:0.36
Consensus pattern (35 bp):
TTGGCGTGTTACGGTTGGATTAGCTCTTATGAGCA
Found at i:43577559 original size:28 final size:28
Alignment explanation
Indices: 43577527--43577583 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
43577517 TTTTGAATAG
* * *
43577527 GTATTTTGGTTGGTATTTGAATTTCTTA
1 GTATTTTGGCTAGTATTTAAATTTCTTA
43577555 GTATTTTGGCTAGTATTTAAATTTCTTA
1 GTATTTTGGCTAGTATTTAAATTTCTTA
43577583 G
1 G
43577584 GGTCCAAGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.21, C:0.05, G:0.19, T:0.54
Consensus pattern (28 bp):
GTATTTTGGCTAGTATTTAAATTTCTTA
Found at i:43580150 original size:27 final size:27
Alignment explanation
Indices: 43580120--43580297 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
43580110 ATATTGAGTC
* * * *
43580120 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
43580147 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
43580174 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
43580202 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
43580229 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
43580256 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
43580283 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
43580298 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:43580259 original size:82 final size:81
Alignment explanation
Indices: 43580141--43580296 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
43580131 TGCTATATAA
* *
43580141 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
43580206 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
43580223 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
43580287 CACTTAGTGC
65 CACTTAGTGC
43580297 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:43585472 original size:27 final size:26
Alignment explanation
Indices: 43585432--43585527 Score: 102
Period size: 27 Copynumber: 3.6 Consensus size: 26
43585422 CCTGAACCCA
43585432 TATGAGACAAAATGAGTATTTTTCCCT
1 TATGAGACAAAATGA-TATTTTTCCCT
* * *
43585459 TGTGAGACAAAATGACTATTTTGCTCT
1 TATGAGACAAAATGA-TATTTTTCCCT
* * *
43585486 CATGTGATAAAATGATGATTTTTCCCT
1 TATGAGACAAAATGAT-ATTTTTCCCT
*
43585513 TATGAGATAAAATGA
1 TATGAGACAAAATGA
43585528 CCAAAATACC
Statistics
Matches: 56, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.02
27 55 0.98
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.36
Consensus pattern (26 bp):
TATGAGACAAAATGATATTTTTCCCT
Found at i:43585550 original size:27 final size:27
Alignment explanation
Indices: 43585520--43585639 Score: 186
Period size: 27 Copynumber: 4.4 Consensus size: 27
43585510 CCTTATGAGA
**
43585520 TAAAATGACCAAAATACCCCTATAAGG
1 TAAAATGACTGAAATACCCCTATAAGG
*
43585547 TAAAATGACTGAAATACTCCTATAAGG
1 TAAAATGACTGAAATACCCCTATAAGG
*
43585574 TAAAATGACTGTAATACCCCTATAAGG
1 TAAAATGACTGAAATACCCCTATAAGG
* *
43585601 TAAAATGACTGTAATACCCCTGTAAGG
1 TAAAATGACTGAAATACCCCTATAAGG
43585628 TAAAATGACTGA
1 TAAAATGACTGA
43585640 TTTTCCCTAC
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.43, C:0.17, G:0.15, T:0.24
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCCTATAAGG
Found at i:43588474 original size:50 final size:49
Alignment explanation
Indices: 43588356--43588531 Score: 194
Period size: 50 Copynumber: 3.5 Consensus size: 49
43588346 CTAGTACGCA
* * **
43588356 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
43588405 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
* *** * *
43588455 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCTAATACACG
43588506 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
43588532 TGCGACCTCA
Statistics
Matches: 109, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 29 0.27
50 41 0.38
51 36 0.33
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:43588531 original size:101 final size:99
Alignment explanation
Indices: 43588356--43588542 Score: 268
Period size: 101 Copynumber: 1.9 Consensus size: 99
43588346 CTAGTACGCA
* * *
43588356 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
43588421 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * *
43588455 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
*
43588519 TTAGTACTACACATGCGACCTCAC
63 TTAGTACTACACACGCGACCTCAC
43588543 AATAGATCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
98 4 0.05
99 30 0.39
101 43 0.56
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:43591745 original size:31 final size:31
Alignment explanation
Indices: 43591703--43591766 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
43591693 CCTTTTCATA
*
43591703 TTTCATTTTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
43591734 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
43591765 TT
1 TT
43591767 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:43592010 original size:24 final size:24
Alignment explanation
Indices: 43591972--43592123 Score: 245
Period size: 24 Copynumber: 6.4 Consensus size: 24
43591962 CTGGAGGCCT
*
43591972 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
43591997 AGCCCTTTTTATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
43592021 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
43592044 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
43592068 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
43592092 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
43592115 AGCCCTTTT
1 AGCCCTTTT
43592124 TCACTTCCTC
Statistics
Matches: 120, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 44 0.37
24 72 0.60
25 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:43592058 original size:71 final size:71
Alignment explanation
Indices: 43591972--43592123 Score: 268
Period size: 71 Copynumber: 2.1 Consensus size: 71
43591962 CTGGAGGCCT
*
43591972 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTG
43592037 GGGCATA
65 GGGCATA
* *
43592044 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
43592109 GGCATA
66 GGCATA
43592115 AGCCCTTTT
1 AGCCCTTTT
43592124 TCACTTCCTC
Statistics
Matches: 77, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
71 73 0.95
72 4 0.05
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (71 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGG
GGCATA
Found at i:43592123 original size:47 final size:48
Alignment explanation
Indices: 43591972--43592123 Score: 245
Period size: 47 Copynumber: 3.2 Consensus size: 48
43591962 CTGGAGGCCT
* *
43591972 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
43592021 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
43592068 AGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
43592115 AGCCCTTTT
1 AGCCCTTTT
43592124 TCACTTCCTC
Statistics
Matches: 98, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
47 71 0.72
48 23 0.23
49 4 0.04
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:43592198 original size:20 final size:20
Alignment explanation
Indices: 43592173--43592239 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
43592163 TTATGATTAC
*
43592173 ATCATGTGCATATTATACAT
1 ATCATGTGCATATCATACAT
43592193 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
43592213 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
43592233 ACCATGT
1 ATCATGT
43592240 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:43592308 original size:25 final size:25
Alignment explanation
Indices: 43592276--43592323 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
43592266 ATACATAAAC
* * *
43592276 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
43592301 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
43592324 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:43593545 original size:27 final size:27
Alignment explanation
Indices: 43593483--43593560 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
43593473 GGGCATATTC
43593483 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
43593510 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
43593537 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
43593561 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:43593749 original size:54 final size:53
Alignment explanation
Indices: 43593578--43593788 Score: 226
Period size: 54 Copynumber: 3.9 Consensus size: 53
43593568 TTTCATCCTA
* * * * *
43593578 CAAGGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCAGTAA-TTTGCAAAC
* * * * * *
43593632 CAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTTGCAAAT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-TTAAGGGTATTTCAGTAA-TTTGCAAAC
* * *
43593688 CAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCAGTAATTT-GCAAAC
*
43593742 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTAGTAATTT
1 CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCAGTAATTT
43593789 TGTAAATCGA
Statistics
Matches: 129, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
53 3 0.02
54 76 0.59
55 16 0.12
56 34 0.26
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (53 bp):
CAAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCAGTAATTTGCAAAC
Found at i:43593760 original size:110 final size:108
Alignment explanation
Indices: 43593581--43593796 Score: 256
Period size: 110 Copynumber: 2.0 Consensus size: 108
43593571 CATCCTACAA
* *** *
43593581 GGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTA
1 GGGTATTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTCTA
*
43593646 TAATTTTTAGAAAGTCAAGGGTATTTCT-GTAACTTTGCAAATCAG
66 TAA-TTTTACAAA-TCAAGGGTATTT-TAGTAACTTTGCAAATCAG
* * * *
43593691 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTT-TG
1 GGGTATTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTCT-
* * * *
43593755 GTAATTTTACAAATTAAGGGTATTTTAGTAATTTTGTAAATC
65 ATAATTTTACAAATCAAGGGTATTTTAGTAACTTTGCAAATC
43593797 GAGAGTAAAA
Statistics
Matches: 90, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
107 1 0.01
108 24 0.27
109 9 0.10
110 56 0.62
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (108 bp):
GGGTATTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTCTA
TAATTTTACAAATCAAGGGTATTTTAGTAACTTTGCAAATCAG
Found at i:43593795 original size:27 final size:27
Alignment explanation
Indices: 43593578--43593789 Score: 169
Period size: 27 Copynumber: 7.8 Consensus size: 27
43593568 TTTCATCCTA
* * * *
43593578 CAAGGGTGTTTTGGTAAATCTACAAA-
1 CAAGGGTATTTTAGTAATTTTACAAAT
* ** *
43593604 CTAAGGGTATTTCAGTAATTTTGTAAAC
1 C-AAGGGTATTTTAGTAATTTTACAAAT
* *
43593632 CAATGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTACAAA-T
* *
43593661 CAAGGGTATTTCT-GTAACTTTGCAAAT
1 CAAGGGTATTT-TAGTAATTTTACAAAT
* *
43593688 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
* ** * *
43593715 TAAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAT
*
43593742 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAT
*
43593769 TAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTAGTAATTTT
43593790 GTAAATCGAG
Statistics
Matches: 149, Mismatches: 30, Indels: 13
0.78 0.16 0.07
Matches are distributed among these distances:
26 2 0.01
27 117 0.79
28 15 0.10
29 15 0.10
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTACAAAT
Found at i:43593811 original size:27 final size:27
Alignment explanation
Indices: 43593781--43593957 Score: 207
Period size: 27 Copynumber: 6.6 Consensus size: 27
43593771 AGGGTATTTT
* *
43593781 AGTAATTTTGTAAATCGAGAGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
43593808 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
43593835 AGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
43593862 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
43593889 -GATAATTATGTAAATC-AGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
*
43593916 AGTAATTATGTAAATCG-GGAGTAAAAC
1 AGTAATTCTGTAAATCGAGG-GTAAAAC
* *
43593943 GGTAATTTTGTAAAT
1 AGTAATTCTGTAAAT
43593958 TGGGGGTACT
Statistics
Matches: 133, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
26 4 0.03
27 128 0.96
28 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.29
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:43593813 original size:54 final size:54
Alignment explanation
Indices: 43593755--43593922 Score: 140
Period size: 54 Copynumber: 3.1 Consensus size: 54
43593745 GGGTATTTTG
* * *** * * *
43593755 GTAATTTTACAAATTAAGGGTATTTTAGTAATTTTGTAAATCGAGAGTAAAACA
1 GTAATTCTACAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGAGTAAAACA
** * *
43593809 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGGGTAAAACG
1 GTAATTCTACAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGAGTAAAACA
** * * * * * *
43593863 GTAATTCTGTAAATCGAGGGTAAAA-CGATAATTATGTAAATCAGGGGTAAAACA
1 GTAATTCTACAAATCAAGGGTAAAATAG-TAATTCTATAAATCAAGAGTAAAACA
43593917 GTAATT
1 GTAATT
43593923 ATGTAAATCG
Statistics
Matches: 95, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
53 1 0.01
54 94 0.99
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (54 bp):
GTAATTCTACAAATCAAGGGTAAAATAGTAATTCTATAAATCAAGAGTAAAACA
Found at i:43593965 original size:81 final size:81
Alignment explanation
Indices: 43593782--43593957 Score: 248
Period size: 81 Copynumber: 2.2 Consensus size: 81
43593772 GGGTATTTTA
* * * *
43593782 GTAATTTTGTAAATCGAGAGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTATATA
43593847 AATCAAGGGTAAAACG
66 AATCAAGGGTAAAACG
* * *
43593863 GTAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGTAAATCAGGGGTAAAACAGTAATTATGT
1 GTAATTTTGTAAATCGAGGGTAAAACAG-TAATTATGTAAATCAAGGGTAAAACAGTAATTATAT
*
43593927 AAATC-GGGAGTAAAACG
65 AAATCAAGG-GTAAAACG
43593944 GTAATTTTGTAAAT
1 GTAATTTTGTAAAT
43593958 TGGGGGTACT
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 3 0.04
81 81 0.96
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.29
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAACAGTAATTATATA
AATCAAGGGTAAAACG
Found at i:43593992 original size:27 final size:27
Alignment explanation
Indices: 43593971--43594060 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
43593961 GGGTACTTTG
*
43593971 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* *
43593998 ATAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * * *
43594025 GTATTTTTACAAA-CTAAGCGTGTTTCG
1 GTAATTTTACAAATCGAAG-GTATTTCA
43594052 GTAATTTTA
1 GTAATTTTA
43594061 GTAAACTAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 3 0.06
27 49 0.94
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:43597070 original size:35 final size:35
Alignment explanation
Indices: 43597020--43597193 Score: 206
Period size: 35 Copynumber: 5.0 Consensus size: 35
43597010 CTCTCTGTTA
* *
43597020 GGCGTGTTTCGGTTGGATTAGCACCTATGAGCATT
1 GGCGTGTTTCGGTTGGATTAGCTCTTATGAGCATT
* * *
43597055 GGTGTGTTTCTGTTGGATTAGCTCTTATAAGCATT
1 GGCGTGTTTCGGTTGGATTAGCTCTTATGAGCATT
* *
43597090 GGCATGTTACGGTTGGATTAGCTCTTATGAGCATT
1 GGCGTGTTTCGGTTGGATTAGCTCTTATGAGCATT
* * * *
43597125 GGCGTGTTACGGTTAGACTAGCTCTTATGAGCACT
1 GGCGTGTTTCGGTTGGATTAGCTCTTATGAGCATT
* * *
43597160 GGCGTGTTAT-AGTTTGATTAGCTCTTTTGAGCAT
1 GGCGTGTT-TCGGTTGGATTAGCTCTTATGAGCAT
43597194 CAACGTGTTA
Statistics
Matches: 118, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
35 118 1.00
ACGTcount: A:0.18, C:0.15, G:0.28, T:0.39
Consensus pattern (35 bp):
GGCGTGTTTCGGTTGGATTAGCTCTTATGAGCATT
Found at i:43599768 original size:74 final size:74
Alignment explanation
Indices: 43599647--43599795 Score: 298
Period size: 74 Copynumber: 2.0 Consensus size: 74
43599637 GAATAGACCA
43599647 AAATGTCATCAATGAACACCACTACGAACCGATCCAAATACGGTCTGAAGATCCGATTAATCAAA
1 AAATGTCATCAATGAACACCACTACGAACCGATCCAAATACGGTCTGAAGATCCGATTAATCAAA
43599712 TCCATAAAT
66 TCCATAAAT
43599721 AAATGTCATCAATGAACACCACTACGAACCGATCCAAATACGGTCTGAAGATCCGATTAATCAAA
1 AAATGTCATCAATGAACACCACTACGAACCGATCCAAATACGGTCTGAAGATCCGATTAATCAAA
43599786 TCCATAAAT
66 TCCATAAAT
43599795 A
1 A
43599796 CTGCAGGGGC
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.42, C:0.24, G:0.12, T:0.21
Consensus pattern (74 bp):
AAATGTCATCAATGAACACCACTACGAACCGATCCAAATACGGTCTGAAGATCCGATTAATCAAA
TCCATAAAT
Found at i:43599795 original size:35 final size:35
Alignment explanation
Indices: 43599682--43599796 Score: 83
Period size: 37 Copynumber: 3.2 Consensus size: 35
43599672 GAACCGATCC
43599682 AAATACGGTCTGAAGATCCGATTAATCAAATCCAT
1 AAATACGGTCTGAAGATCCGATTAATCAAATCCAT
** * * * * *
43599717 AAATAAATGTCATCAATGAACACCACT-A-CGAA-CCGAT
1 AAAT-ACGGTC-TGAA-GATC-CGATTAATCAAATCC-AT
43599754 CCAAATACGGTCTGAAGATCCGATTAATCAAATCCAT
1 --AAATACGGTCTGAAGATCCGATTAATCAAATCCAT
43599791 AAATAC
1 AAATAC
43599797 TGCAGGGGCA
Statistics
Matches: 56, Mismatches: 14, Indels: 20
0.62 0.16 0.22
Matches are distributed among these distances:
35 13 0.23
36 10 0.18
37 16 0.29
38 10 0.18
39 7 0.12
ACGTcount: A:0.43, C:0.23, G:0.12, T:0.23
Consensus pattern (35 bp):
AAATACGGTCTGAAGATCCGATTAATCAAATCCAT
Found at i:43607106 original size:30 final size:30
Alignment explanation
Indices: 43607070--43607130 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
43607060 CTATCACATT
43607070 TCAAAAATGTCGCACATAAGCCCTATTGAC
1 TCAAAAATGTCGCACATAAGCCCTATTGAC
*
43607100 TCAAAAATGTCGCACATAAGTCCTATTGAC
1 TCAAAAATGTCGCACATAAGCCCTATTGAC
43607130 T
1 T
43607131 AAATTCACAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (30 bp):
TCAAAAATGTCGCACATAAGCCCTATTGAC
Found at i:43630273 original size:34 final size:35
Alignment explanation
Indices: 43630211--43630297 Score: 90
Period size: 34 Copynumber: 2.5 Consensus size: 35
43630201 AGGTAAGTAT
*
43630211 ATGT-AAGCTTATATTGAACTTGATTATTCGATTAC
1 ATGTGAAG-TTATATTGAACATGATTATTCGATTAC
* **
43630246 ATGTGAA-TTATATTGAACAT-ATATATTCGGTTTT
1 ATGTGAAGTTATATTGAACATGAT-TATTCGATTAC
*
43630280 ATGTGAAGTTATTTTGAA
1 ATGTGAAGTTATATTGAA
43630298 TGTGCATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
33 2 0.05
34 27 0.61
35 13 0.30
36 2 0.05
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.45
Consensus pattern (35 bp):
ATGTGAAGTTATATTGAACATGATTATTCGATTAC
Found at i:43633012 original size:54 final size:54
Alignment explanation
Indices: 43632926--43633133 Score: 206
Period size: 54 Copynumber: 3.9 Consensus size: 54
43632916 TTGGTAAGAT
* * *
43632926 AAGGATATCATGTAAGACTATGCCAAGGCATGGCATTGATAAGTTCCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCCATAAGGC
* * * * *
43632980 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CCATAAGGC
* * * * *
43633035 AAAGG-TCCCATGTAAGACCATGCCAA-AGCAAGGAATTGGTGAGTT-CATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGA-CATGGCATTGATAAGTTCCATAAGGC
* * * * *
43633088 AAGGGTACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
43633134 GAAAAGGAAA
Statistics
Matches: 127, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
52 4 0.03
53 38 0.30
54 42 0.33
55 39 0.31
56 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCCATAAGGC
Found at i:43633051 original size:55 final size:53
Alignment explanation
Indices: 43632934--43633122 Score: 202
Period size: 55 Copynumber: 3.5 Consensus size: 53
43632924 ATAAGGATAT
* * * * *
43632934 CATGTAAGACTATGCCAAGGCATGGCATTGATAAGTTCCATAAGGC-AAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CATAAGGCAAAGG-TAC
* *
43632988 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-C-ATAAGGCAAAGGTAC
* * * *
43633043 CATGTAAGACCATGCCAA-AGCAAGGAATTGGTGAGTTCATAAGGCAAGGGTAC
1 CATGTAAGACCATGCCAAGA-CATGGCATTGATGAGTTCATAAGGCAAAGGTAC
* *
43633096 CACGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
43633123 ATGGTAAGTT
Statistics
Matches: 113, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
53 34 0.30
54 37 0.33
55 38 0.34
56 4 0.04
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (53 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGCAAAGGTAC
Found at i:43633133 original size:53 final size:54
Alignment explanation
Indices: 43632934--43633132 Score: 188
Period size: 53 Copynumber: 3.7 Consensus size: 54
43632924 ATAAGGATAT
* * * * ** *
43632934 CATGTAAGACTATGCCAAGGCATGGCATTGATAAGTTCCATAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCAATGATAAGTTACATAAGGCAAGGGTAC
* * * * *
43632988 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCAATGATAAGTTAC-ATAAGGCAAGGGTAC
* * *
43633043 CATGTAAGACCATGCCAA-AGCAAGG-AATTGGTGAGTT-CATAAGGCAAGGGTAC
1 CATGTAAGACCATGCCAAGA-CATGGCAA-TGATAAGTTACATAAGGCAAGGGTAC
* * *
43633096 CACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 CATGTAAGACCATGCCAAGACATGGCAATGATAAGTT
43633133 CGAAAAGGAA
Statistics
Matches: 120, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
53 41 0.34
54 40 0.33
55 39 0.32
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCAATGATAAGTTACATAAGGCAAGGGTAC
Found at i:43633148 original size:108 final size:109
Alignment explanation
Indices: 43632934--43633144 Score: 264
Period size: 108 Copynumber: 2.0 Consensus size: 109
43632924 ATAAGGATAT
* * * * * *
43632934 CATGTAAGACTATGCCAAGGCATGGCATTGATAAGTTCCATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAAGCAAGGAATTGATAAGTTCCATAAGGCAAGGAAACCACGTAAGACC
* * * * *
43632999 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCAATGATAAGTTACGAAAAGGAAAAGGTCC
* * **
43633043 CATGTAAGACCATGCCAAAGCAAGGAATTGGTGAGTT-CATAAGGCAAGGGTACCACGTAAGACC
1 CATGTAAGACCATGCCAAAGCAAGGAATTGATAAGTTCCATAAGGCAAGGAAACCACGTAAGACC
*
43633107 ATGTCAAGACATGGCAATGGTAAGTT-CGAAAAGGAAAA
66 ATGTCAAGACATGGCAATGATAAGTTACGAAAAGGAAAA
43633145 AGGTTCCTCA
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
107 9 0.10
108 46 0.53
109 31 0.36
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.20
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAAGCAAGGAATTGATAAGTTCCATAAGGCAAGGAAACCACGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACGAAAAGGAAAAGGTCC
Found at i:43638341 original size:96 final size:96
Alignment explanation
Indices: 43638177--43638463 Score: 567
Period size: 96 Copynumber: 3.0 Consensus size: 96
43638167 TGAATCTGTG
43638177 CCTGTTGTCTGTGAGTTCTTTGATGTGTTTCCTGAAGAACTTCCGGGTTTACCTTCGGTTAGAGA
1 CCTGTTGTCTGTGAGTTCTTTGATGTGTTTCCTGAAGAACTTCCGGGTTTACCTTCGGTTAGAGA
43638242 AGTAGAATTTGGCATTGAATTGGTACTTGGT
66 AGTAGAATTTGGCATTGAATTGGTACTTGGT
43638273 CCTGTTGTCTGTGAGTTCTTTGATGTGTTTCCTGAAGAACTTCCGGGTTTACCTTCGGTTAGAGA
1 CCTGTTGTCTGTGAGTTCTTTGATGTGTTTCCTGAAGAACTTCCGGGTTTACCTTCGGTTAGAGA
43638338 AGTAGAATTTGGCATTGAATTGGTACTTGGT
66 AGTAGAATTTGGCATTGAATTGGTACTTGGT
43638369 CCTGTTGTCTGTGAGTTCTTTGATGTGTTTCCTGAAGAACTTCCGGGTTTACCTTCGGTTAGAGA
1 CCTGTTGTCTGTGAGTTCTTTGATGTGTTTCCTGAAGAACTTCCGGGTTTACCTTCGGTTAGAGA
43638434 AGTAGAATTT-GCATTGAATTGGTACTTGGT
66 AGTAGAATTTGGCATTGAATTGGTACTTGGT
43638464 ACTACTCCGA
Statistics
Matches: 191, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
95 20 0.10
96 171 0.90
ACGTcount: A:0.19, C:0.15, G:0.27, T:0.40
Consensus pattern (96 bp):
CCTGTTGTCTGTGAGTTCTTTGATGTGTTTCCTGAAGAACTTCCGGGTTTACCTTCGGTTAGAGA
AGTAGAATTTGGCATTGAATTGGTACTTGGT
Found at i:43641307 original size:38 final size:37
Alignment explanation
Indices: 43641215--43641321 Score: 142
Period size: 37 Copynumber: 2.8 Consensus size: 37
43641205 GGCATGAAGG
* * *
43641215 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCG-ATATAATACCAGCACAAAGCCTGCGGGATTTAA
43641253 CCCGATATAATACCAGCACAAAGCCTGCGGGATTTAA
1 CCCGATATAATACCAGCACAAAGCCTGCGGGATTTAA
** *
43641290 CCCGGATATTTTACCAGCACGAAGCCTGCGGG
1 CCC-GATATAATACCAGCACAAAGCCTGCGGG
43641322 TCTTTAAGCC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
37 33 0.53
38 29 0.47
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (37 bp):
CCCGATATAATACCAGCACAAAGCCTGCGGGATTTAA
Found at i:43658335 original size:52 final size:52
Alignment explanation
Indices: 43658257--43658361 Score: 192
Period size: 52 Copynumber: 2.0 Consensus size: 52
43658247 ACCATGGGAG
*
43658257 AGAAATGTTAAGGAGACTATAGGGAGTTGGAATATCAAATTGGATTCAATGA
1 AGAAATGTTAAGGAGACTATAGGGAGTTAGAATATCAAATTGGATTCAATGA
*
43658309 AGAAATGTTAAGGAGACTATGGGGAGTTAGAATATCAAATTGGATTCAATGA
1 AGAAATGTTAAGGAGACTATAGGGAGTTAGAATATCAAATTGGATTCAATGA
43658361 A
1 A
43658362 TAGAAGCTCG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.41, C:0.06, G:0.27, T:0.27
Consensus pattern (52 bp):
AGAAATGTTAAGGAGACTATAGGGAGTTAGAATATCAAATTGGATTCAATGA
Found at i:43660412 original size:40 final size:40
Alignment explanation
Indices: 43660348--43660435 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
43660338 TATTCGGATG
*
43660348 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
* * *
43660388 ATATTCGGACTAAGATCCGGAGGCAATTGTGCTAGTTATT
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
*
43660428 ATAACCGG
1 ATATCCGG
43660436 GTTAAGTCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTACT
Found at i:43660452 original size:40 final size:40
Alignment explanation
Indices: 43660408--43660500 Score: 143
Period size: 40 Copynumber: 2.3 Consensus size: 40
43660398 TAAGATCCGG
43660408 AGGCAATT-GTGCTAGTTATTATAACCGGGTTAAGTCCCAA
1 AGGC-ATTCGTGCTAGTTATTATAACCGGGTTAAGTCCCAA
** *
43660448 AGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGA
1 AGGCATTCGTGCTAGTTATTATAACCGGGTTAAGTCCCAA
43660488 AGGCATTCGTGCT
1 AGGCATTCGTGCT
43660501 GGTTGTTACA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.06
40 45 0.94
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (40 bp):
AGGCATTCGTGCTAGTTATTATAACCGGGTTAAGTCCCAA
Found at i:43664284 original size:47 final size:47
Alignment explanation
Indices: 43664230--43664347 Score: 166
Period size: 47 Copynumber: 2.5 Consensus size: 47
43664220 TTGAGTTCCA
*
43664230 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATATAA-TCAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATATAACT-AGGCATCCG
* * * *
43664277 AACTCGTTAACTTGAGTCCGAGTTTGTGAAATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATATAACTAGGCATCCG
*
43664324 AACTCGTTGAGTTGAGTCCAAGTT
1 AACTCGTTGAGTTGAGTCCGAGTT
43664348 AACTTATGGA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 61 0.98
48 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (47 bp):
AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATATAACTAGGCATCCG
Found at i:43669768 original size:38 final size:38
Alignment explanation
Indices: 43669685--43669817 Score: 178
Period size: 38 Copynumber: 3.5 Consensus size: 38
43669675 GAATCCAGTC
* * * *
43669685 ACCAGCACAAAACCTGCAGGACTTTAAGCTCGAATATAAT
1 ACCAGCACGAAGCCTGCAGGA-TTTAA-CCCGGATATAAT
* *
43669725 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCAGGATTTAACCCGGATATAAT
43669763 ACCAGCACGAAGCCTGCAGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCAGGATTTAACCCGGATATAAT
*
43669801 ACCAACACGAAG-CTGCA
1 ACCAGCACGAAGCCTGCA
43669818 ACCTTTAAGC
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
37 5 0.06
38 57 0.67
39 5 0.06
40 18 0.21
ACGTcount: A:0.36, C:0.27, G:0.19, T:0.18
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCAGGATTTAACCCGGATATAAT
Found at i:43669831 original size:38 final size:38
Alignment explanation
Indices: 43669718--43669834 Score: 137
Period size: 38 Copynumber: 3.1 Consensus size: 38
43669708 TTAAGCTCGA
* * ***
43669718 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAACACGAAGCCTGCAACATTTAACCCGG
* **
43669756 ATATAATACCAGCACGAAGCCTGCAGGATTTAACCCGG
1 ATATAATACCAACACGAAGCCTGCAACATTTAACCCGG
*
43669794 ATATAATACCAACACGAAG-CTGCAACCTTTAAGCCCGG
1 ATATAATACCAACACGAAGCCTGCAACATTTAA-CCCGG
43669832 ATA
1 ATA
43669835 CACATCAAAT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
37 10 0.14
38 62 0.86
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (38 bp):
ATATAATACCAACACGAAGCCTGCAACATTTAACCCGG
Found at i:43669832 original size:76 final size:78
Alignment explanation
Indices: 43669685--43669834 Score: 180
Period size: 76 Copynumber: 1.9 Consensus size: 78
43669675 GAATCCAGTC
* * * ***
43669685 ACCAGCACAAAACCTGCAGGACTTTAAGCTCGAATATAATACCAGCACTAAGCCTGCGGGATTTA
1 ACCAGCACAAAACCTGCAGGACTTTAAGCCCGAATATAATACCAACACGAAGCCTGCAACATTTA
43669750 ACCCGGATATAAT
66 ACCCGGATATAAT
* * * *
43669763 ACCAGCACGAAGCCTGCAGGA-TTTAA-CCCGGATATAATACCAACACGAAG-CTGCAACCTTTA
1 ACCAGCACAAAACCTGCAGGACTTTAAGCCCGAATATAATACCAACACGAAGCCTGCAACATTTA
43669825 AGCCCGGATA
66 A-CCCGGATA
43669835 CACATCAAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
75 9 0.15
76 28 0.46
77 5 0.08
78 19 0.31
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (78 bp):
ACCAGCACAAAACCTGCAGGACTTTAAGCCCGAATATAATACCAACACGAAGCCTGCAACATTTA
ACCCGGATATAAT
Found at i:43678819 original size:9 final size:9
Alignment explanation
Indices: 43678807--43678863 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
43678797 TTTGATAAAC
43678807 ATGATATGT
1 ATGATATGT
*
43678816 ATGATATGCAC
1 ATGATATG--T
*
43678827 ATGACATGT
1 ATGATATGT
*
43678836 ATGATATGCAC
1 ATGATATG--T
43678847 ATGATATGT
1 ATGATATGT
43678856 ATGATATG
1 ATGATATG
43678864 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:43678830 original size:20 final size:20
Alignment explanation
Indices: 43678805--43678867 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
43678795 ATTTTGATAA
43678805 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
43678825 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
43678845 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
43678865 ACA
1 ACA
43678868 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:43678948 original size:24 final size:24
Alignment explanation
Indices: 43678921--43679280 Score: 686
Period size: 24 Copynumber: 15.0 Consensus size: 24
43678911 GAGGAAGTGC
43678921 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43678945 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43678969 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43678993 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43679017 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43679041 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43679065 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43679089 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43679113 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43679137 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43679161 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43679185 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43679209 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
43679233 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
43679257 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
43679281 ATGATAAAGC
Statistics
Matches: 333, Mismatches: 1, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
24 322 0.97
25 11 0.03
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:43679524 original size:38 final size:38
Alignment explanation
Indices: 43679473--43679567 Score: 138
Period size: 38 Copynumber: 2.5 Consensus size: 38
43679463 CGTTTACAGT
43679473 AAAGGCTTCGGCCCAGTAATATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGAAATATGA
** *
43679511 AAAGGCTTCGGCCCAGTGTTATGAATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGAAATATGA
43679549 AAAGGGCTAT-GGCCCAGTA
1 AAA-GGCT-TCGGCCCAGTA
43679568 CATGTTTGAG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
38 38 0.75
39 12 0.24
40 1 0.02
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGAAATATGA
Found at i:43687146 original size:9 final size:9
Alignment explanation
Indices: 43687134--43687190 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
43687124 TTTGATAAAC
43687134 ATGATATGT
1 ATGATATGT
*
43687143 ATGATATGCAC
1 ATGATATG--T
*
43687154 ATGACATGT
1 ATGATATGT
*
43687163 ATGATATGCAC
1 ATGATATG--T
43687174 ATGATATGT
1 ATGATATGT
43687183 ATGATATG
1 ATGATATG
43687191 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:43687157 original size:20 final size:20
Alignment explanation
Indices: 43687132--43687194 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
43687122 ATTTTGATAA
43687132 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
43687152 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
43687172 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
43687192 ACA
1 ACA
43687195 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:43687273 original size:24 final size:24
Alignment explanation
Indices: 43687246--43687318 Score: 96
Period size: 23 Copynumber: 3.0 Consensus size: 24
43687236 TGGAGGAAGT
43687246 TTAAAAGGGCTTATGCCCCAGTTA
1 TTAAAAGGGCTTATGCCCCAGTTA
*
43687270 TT-AAAGGGCTTATGCCCTAGTTA
1 TTAAAAGGGCTTATGCCCCAGTTA
*
43687293 TTAAAAGAGGC-TAGGCCTCCAGTTA
1 TTAAAAG-GGCTTATGCC-CCAGTTA
43687318 T
1 T
43687319 ATGATAAAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 22 0.51
24 11 0.26
25 10 0.23
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (24 bp):
TTAAAAGGGCTTATGCCCCAGTTA
Found at i:43687545 original size:30 final size:31
Alignment explanation
Indices: 43687511--43687573 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
43687501 CGTTTACAGT
*
43687511 AAAGGCTTCGGCCCAGTAATATGAA-TATGA
1 AAAGGCTCCGGCCCAGTAATATGAATTATGA
**
43687541 AAAGGCTCCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTCCGGCCCAGTAATATGAATTATGA
43687572 AA
1 AA
43687574 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 22 0.76
31 7 0.24
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTCCGGCCCAGTAATATGAATTATGA
Found at i:43690854 original size:41 final size:41
Alignment explanation
Indices: 43690800--43690882 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
43690790 TGATGTATGA
**
43690800 GAATGATTGCTTGAGGTTGATAAATGTAAGCTATGTGTTAT
1 GAATGATTGCTTGAGGTTGATAAATGTAAGCTACATGTTAT
43690841 GAATGATTGCTTGAGGTTGATAAATGTAAGCTACATGTTAT
1 GAATGATTGCTTGAGGTTGATAAATGTAAGCTACATGTTAT
43690882 G
1 G
43690883 TTTTGATCGG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (41 bp):
GAATGATTGCTTGAGGTTGATAAATGTAAGCTACATGTTAT
Found at i:43693072 original size:43 final size:42
Alignment explanation
Indices: 43692970--43693081 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 42
43692960 TGAGCTTACG
* *
43692970 TGTAAGACCATATCTGAGATATGGCATCGATATGAGACTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTCCA
* * *
43693012 TGTAAGAGCATAGCTGGGCTATTGGCATCGATATGAGA-TCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGACT-CCA
43693055 TGTCAA-ACCATATCTGGGATATGGCAT
1 TGT-AAGACCATATCTGGGATATGGCAT
43693082 TAGTATGGTA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 24 0.41
43 33 0.56
44 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTCCA
Found at i:43693193 original size:20 final size:20
Alignment explanation
Indices: 43693168--43693206 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
43693158 AATGTTTAAG
43693168 TTGTGAAAAACTATGGTATT
1 TTGTGAAAAACTATGGTATT
* *
43693188 TTGTGAAAGATTATGGTAT
1 TTGTGAAAAACTATGGTAT
43693207 GTTGCAAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.23, T:0.41
Consensus pattern (20 bp):
TTGTGAAAAACTATGGTATT
Found at i:43697205 original size:40 final size:39
Alignment explanation
Indices: 43697107--43697369 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
43697097 TCCTCGTTCA
* * * *
43697107 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
43697146 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
43697185 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
43697225 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
43697265 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
43697305 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
43697346 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
43697370 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:43697329 original size:120 final size:119
Alignment explanation
Indices: 43697107--43697369 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
43697097 TCCTCGTTCA
* * *
43697107 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
43697172 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
43697225 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
43697290 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
43697346 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
43697370 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:43697378 original size:41 final size:41
Alignment explanation
Indices: 43697301--43697378 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
43697291 TTTGTATCTC
* * *
43697301 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
43697342 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
43697379 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:43705100 original size:39 final size:40
Alignment explanation
Indices: 43705055--43705226 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
43705045 GCTCCTCGTT
* * *
43705055 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
43705095 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
43705134 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
43705174 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
43705214 CAAATGCCTTCGG
1 CAAATGCCTTCGG
43705227 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:43705155 original size:40 final size:39
Alignment explanation
Indices: 43705057--43705279 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
43705047 TCCTCGTTCA
* * * *
43705057 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
43705096 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
43705135 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
43705175 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
43705215 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
43705256 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
43705280 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:43705239 original size:80 final size:79
Alignment explanation
Indices: 43705055--43705279 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
43705045 GCTCCTCGTT
* * * * *
43705055 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
43705119 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
43705134 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
43705199 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
43705214 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
43705278 GA
63 GA
43705280 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:43705288 original size:41 final size:41
Alignment explanation
Indices: 43705211--43705288 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
43705201 TTTGTATCTC
* * *
43705211 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
43705252 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
43705289 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:43710927 original size:43 final size:44
Alignment explanation
Indices: 43710818--43710987 Score: 107
Period size: 43 Copynumber: 3.9 Consensus size: 44
43710808 ATATCGTAAA
* ** * * *
43710818 ATGCCAACGTCCCAGATGTGGTCTTACATGAAATC-AAA-TGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACA-CAAATCAAAATTATAG
* * * * *
43710861 ATGCCACTATCCCATATAGGGTCTTACACAAATCAAAATTA-AG
1 ATGCCAATGTCCCAGACATGGTCTTACACAAATCAAAATTATAG
* * * * *
43710904 ATGCCAATGTCTCGGACATGGTCTTACTCAAAATC-ACA-TATCG
1 ATGCCAATGTCCCAGACATGGTCTTACAC-AAATCAAAATTATAG
* *
43710947 ATGCCAATGTCCCAGACGTGGTCTTAACACATATCGAAAAT
1 ATGCCAATGTCCCAGACATGGTCTT-ACACAAATC-AAAAT
43710988 CCTATGTCAT
Statistics
Matches: 94, Mismatches: 25, Indels: 13
0.71 0.19 0.10
Matches are distributed among these distances:
42 7 0.07
43 76 0.81
44 9 0.10
45 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACAAATCAAAATTATAG
Found at i:43720173 original size:18 final size:18
Alignment explanation
Indices: 43720128--43720174 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
43720118 TTAAAGATTT
43720128 TTTAT-TTTTTATTTTTA
1 TTTATCTTTTTATTTTTA
43720145 TTTCCA-C-TTTTATTTTTA
1 TTT--ATCTTTTTATTTTTA
43720163 TTTATCTTTTTA
1 TTTATCTTTTTA
43720175 AGTACTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 9
0.74 0.00 0.26
Matches are distributed among these distances:
16 1 0.04
17 4 0.16
18 19 0.76
19 1 0.04
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATCTTTTTATTTTTA
Found at i:43727456 original size:43 final size:42
Alignment explanation
Indices: 43727402--43727569 Score: 164
Period size: 43 Copynumber: 3.9 Consensus size: 42
43727392 ATATCATACA
* *
43727402 ATGCCAATGTCCTAGACGTGGTCTTACATGAAATCACATGTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGAAATCACAT-TTG
* *
43727445 ATGCCACTGTCCCAGACAG-GGTCTTACACG-AATCACAATTATG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGAAATCAC-ATT-TG
* * *
43727488 ATGCCAATGTCCTAGACATGGTCTTAC-TCGAAATCACATATTA
1 ATGCCAATGTCCCAGACGTGGTCTTACAT-GAAATCACAT-TTG
* *
43727531 ATGCCAACGTCCCAGACGAGGTCTTACATGAGAA-CACAT
1 ATGCCAATGTCCCAGACGTGGTCTTACATGA-AATCACAT
43727570 ATCAGAAATC
Statistics
Matches: 103, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 7 0.07
43 85 0.83
44 11 0.11
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGAAATCACATTTG
Found at i:43739479 original size:79 final size:80
Alignment explanation
Indices: 43739278--43739495 Score: 205
Period size: 79 Copynumber: 2.8 Consensus size: 80
43739268 AAATCACGTA
* * ** * * *
43739278 CCTTCGGAATTTAA-CCGGATATAGCT-ACT-CCTTCAAATGCCTTCGGGACATAGCCCGG-TTA
1 CCTTCGGAACTTAACCCGGATATAG-TAACTAGCACCAAA-GCCTTCAGGACTTAGCCCGGAAT-
43739339 TAGTAACTCGCACAAATG
63 TAGTAACTCGCACAAATG
* * *
43739357 CCTTCGGAACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCAGG-CTTAGCCCGGAATTAG
1 CCTTCGGAACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCAGGACTTAGCCCGGAATTAG
*
43739421 TATCTCGCACAAATG
66 TAACTCGCACAAATG
* ** * * *
43739436 CCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGAACTTAACCCGGATATAGTAAC-TAGCACCAAAGCCTTCAGGACTTAGCCCGGA
43739496 CATCATTCGA
Statistics
Matches: 114, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
79 74 0.65
80 36 0.32
81 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGAACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCAGGACTTAGCCCGGAATTAG
TAACTCGCACAAATG
Found at i:43739495 original size:40 final size:40
Alignment explanation
Indices: 43739311--43739495 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
43739301 GCTACTCCTT
* *
43739311 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
43739351 CAAATGCCTTCGGAACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
43739391 CCAATGCCTTCAGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
43739430 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
43739471 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43739496 CATCATTCGA
Statistics
Matches: 121, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 76 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:43742477 original size:40 final size:40
Alignment explanation
Indices: 43742433--43742531 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
43742423 CATGATTACT
* * *
43742433 CTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCACCAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTAGCA-CAAAGC
* * *
43742473 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCACAAAGC
43742513 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
43742532 CATCATTCGA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
39 3 0.06
40 39 0.80
41 7 0.14
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTTAGCACAAAGC
Found at i:43742904 original size:29 final size:29
Alignment explanation
Indices: 43742837--43742915 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
43742827 CTTAATAATC
*
43742837 AACCACGCACACTTAGTGCCATGTACTTTA
1 AACC-CGCACACTTAGTGCCATGCACTTTA
**
43742867 AACTAGCACACTTAGTGCCATGCA-TTTCA
1 AACCCGCACACTTAGTGCCATGCACTTT-A
* *
43742896 AGCCCGCACACTTAATGCCA
1 AACCCGCACACTTAGTGCCA
43742916 ATCTTACAAC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
28 3 0.07
29 35 0.85
30 3 0.07
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCACTTTA
Found at i:43742958 original size:43 final size:43
Alignment explanation
Indices: 43742897--43742999 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
43742887 TGCATTTCAA
* *
43742897 GCCCGCACACTTAATGCCAATCTTACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
43742940 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
43742983 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
43743000 TGAAAACCAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:43759953 original size:180 final size:180
Alignment explanation
Indices: 43759670--43760025 Score: 480
Period size: 180 Copynumber: 2.0 Consensus size: 180
43759660 GAGCTACAAA
* * * * * * * *
43759670 ACTCCAAATTAATATCCAATAATTTTCCCAGAAACTAGACTCATATATACTCTTACCATAAAATT
1 ACTCCAAATTAAGAACCAATAATTCTCCAAGAAAATAGACTAACATATACTATTACCATAAAATT
*
43759735 TTCATAATTTTTGGTTTAGCCAATTAGTACAATTTATTCATTAAAGACACCACTATTTCACTGTC
66 TTCATAATTTTTGGTTTAGCAAATTAGTACAATTTATTCATTAAAGACACCACTATTTCACTGTC
* * *
43759800 CAATAGTTCTGAACTCTCTTTACTAAAAATTATTTATCTCATGGTACGGG
131 CAACAGTTCCGAACTCTCTTCACTAAAAATTATTTATCTCATGGTACGGG
* * * *
43759850 ACTCCAAATTAAGAACTACTAATTCTCCAAGAAAATAGACTAACATATATTATTAGCATAAAATT
1 ACTCCAAATTAAGAACCAATAATTCTCCAAGAAAATAGACTAACATATACTATTACCATAAAATT
* * * *
43759915 TT-ATTAATTTTTGGTTTAGCAAATTAGTACAGTTTATTCATTAAAGATACCCCTGTTTCACTGT
66 TTCA-TAATTTTTGGTTTAGCAAATTAGTACAATTTATTCATTAAAGACACCACTATTTCACTGT
* * * *
43759979 TCGACAGTTCCGATCTTTCTTCACTAAAAATTATTTATCTCATGGTA
130 CCAACAGTTCCGAACTCTCTTCACTAAAAATTATTTATCTCATGGTA
43760026 TAGATCTCAG
Statistics
Matches: 151, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
179 1 0.01
180 150 0.99
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.38
Consensus pattern (180 bp):
ACTCCAAATTAAGAACCAATAATTCTCCAAGAAAATAGACTAACATATACTATTACCATAAAATT
TTCATAATTTTTGGTTTAGCAAATTAGTACAATTTATTCATTAAAGACACCACTATTTCACTGTC
CAACAGTTCCGAACTCTCTTCACTAAAAATTATTTATCTCATGGTACGGG
Found at i:43760670 original size:50 final size:50
Alignment explanation
Indices: 43760584--43760877 Score: 277
Period size: 50 Copynumber: 5.8 Consensus size: 50
43760574 ACCGAAGCTC
* * *
43760584 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * *
43760634 TCTGATACACGTAGTAGCTTGCACTTAGTACCACACATGTGACTTATCCA
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* ** *
43760684 TCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * ** * * *
43760736 -CGGGTATGCATAGTAGCCTGCACTTTGTACTACACGTGCGACCTATCAA
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * *
43760785 TCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTA-AAA
1 TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * *
43760834 CTGTCTTAAACACATAGTAGCCTACACATAGTACTACACATGTG
1 ---TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTG
43760878 TTCTCACAAT
Statistics
Matches: 194, Mismatches: 44, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
49 5 0.03
50 119 0.61
51 35 0.18
52 35 0.18
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:43760804 original size:101 final size:101
Alignment explanation
Indices: 43760645--43760826 Score: 274
Period size: 101 Copynumber: 1.8 Consensus size: 101
43760635 CTGATACACG
* * * * *
43760645 TAGTAGCTTGCACTTAGTACCACACATGTGACTTATCCATCTGATACACATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACCACACATGCGACCTATCAATCCGATACACATAGTAGCCTGCACTT
43760710 AGTACTACACACGTGATCGAAGTTAACGGGTATGCA
66 AGTACTACACACGTGATCGAAGTTAACGGGTATGCA
* * * * *
43760746 TAGTAGCCTGCACTTTGTACTACACGTGCGACCTATCAATCCGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACCACACATGCGACCTATCAATCCGATACACATAGTAGCCTGCACTT
43760811 AGTACTACACACGTGA
66 AGTACTACACACGTGA
43760827 CCTAAAACTG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 71 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACCACACATGCGACCTATCAATCCGATACACATAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTAACGGGTATGCA
Found at i:43764251 original size:32 final size:32
Alignment explanation
Indices: 43764210--43764271 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
43764200 AAATTTGACA
43764210 TAAGAAAATTTATTTTTATTGTATTTTTATGG
1 TAAGAAAATTTATTTTTATTGTATTTTTATGG
43764242 TAAGAAAATTTATTTTTATTGTATTTTTAT
1 TAAGAAAATTTATTTTTATTGTATTTTTAT
43764272 AGTCTACAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (32 bp):
TAAGAAAATTTATTTTTATTGTATTTTTATGG
Done.