Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 139 of 284
Found at i:46586801 original size:32 final size:32
Alignment explanation
Indices: 46586757--46586850 Score: 84
Period size: 32 Copynumber: 2.8 Consensus size: 32
46586747 TCAAGCCCAT
*
46586757 TGGGCCTAAGCCC-ATTCAGATAACAGTGATAC
1 TGGGCC-AAGCCCTATTCAGATAACAGTGAAAC
* * *
46586789 TGGGCCAGAGCCCTTTTCAGATTACA-TTAAAC
1 TGGGCCA-AGCCCTATTCAGATAACAGTGAAAC
*
46586821 TGGGCCTTAGCCCCTTATTCAGATAACAGT
1 TGGGCC-AAG-CCC-TATTCAGATAACAGT
46586851 ATAGCCCATA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
31 1 0.02
32 23 0.47
33 13 0.27
34 11 0.22
35 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (32 bp):
TGGGCCAAGCCCTATTCAGATAACAGTGAAAC
Found at i:46594553 original size:40 final size:40
Alignment explanation
Indices: 46594491--46594695 Score: 290
Period size: 40 Copynumber: 5.2 Consensus size: 40
46594481 AAACCAAGTA
* * *
46594491 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
46594530 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
46594570 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
46594610 CCTTCGGGACTTAGCCCGGATATAGTAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
46594650 CCTTCGGGACTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
46594690 CCTTCG
1 CCTTCG
46594696 TTATCATCCG
Statistics
Matches: 151, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.09
40 137 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:46597786 original size:39 final size:39
Alignment explanation
Indices: 46597730--46597906 Score: 255
Period size: 39 Copynumber: 4.5 Consensus size: 39
46597720 ACAAAGCATG
46597730 CGGGACTTTAAGCCCGGATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTT
*
46597771 CGGGACTTAGCCCGGATATAATGCCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
* * ** *
46597810 AGGGACTTAGCCCGGATAGAGCACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
* **
46597849 CAGGACTTAGCCTTGATATAATACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
46597888 CGGGACTTAGCCCGGATAT
1 CGGGACTTAGCCCGGATAT
46597907 TTTTCCAGGA
Statistics
Matches: 118, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
39 110 0.93
40 2 0.02
41 6 0.05
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCACGAATGCCTT
Found at i:46597943 original size:39 final size:39
Alignment explanation
Indices: 46597899--46597991 Score: 107
Period size: 39 Copynumber: 2.4 Consensus size: 39
46597889 GGGACTTAGC
* * *
46597899 CCGGATATTTTTCCAGGACT-TAGCCTACGGACTTTAAGT
1 CCGGATATTTTTCCAGCA-TAAAGCCTACGGACTTCAAGT
* * * *
46597938 TCGGATATATTTCTAGCATAAAGCCTTCGGACTTCAAGT
1 CCGGATATTTTTCCAGCATAAAGCCTACGGACTTCAAGT
46597977 CCGGATATTTTTCCA
1 CCGGATATTTTTCCA
46597992 ATACCATGCA
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.02
39 42 0.98
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATAAAGCCTACGGACTTCAAGT
Found at i:46601934 original size:32 final size:31
Alignment explanation
Indices: 46601898--46601972 Score: 78
Period size: 32 Copynumber: 2.4 Consensus size: 31
46601888 TCAAGCCCAT
*
46601898 TGGGCCTAAGCCAATTCAGATAACAGTGATAC
1 TGGGCCTAAGCCAATTCAGATAACA-TGAAAC
* ** * *
46601930 TGGGCCAAAGCCCTTTCAGATTACATTAAAC
1 TGGGCCTAAGCCAATTCAGATAACATGAAAC
*
46601961 TGGGCCTTAGCC
1 TGGGCCTAAGCC
46601973 CCTTATTCAA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
31 14 0.40
32 21 0.60
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.24
Consensus pattern (31 bp):
TGGGCCTAAGCCAATTCAGATAACATGAAAC
Found at i:46607665 original size:18 final size:20
Alignment explanation
Indices: 46607629--46607666 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
46607619 AGTATACAAT
46607629 ATCGATACTTATCATAAAGG
1 ATCGATACTTATCATAAAGG
46607649 ATCGATACTT-T-ATAAAGG
1 ATCGATACTTATCATAAAGG
46607667 TATCAATACG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 1 0.06
20 10 0.56
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (20 bp):
ATCGATACTTATCATAAAGG
Found at i:46610923 original size:35 final size:34
Alignment explanation
Indices: 46610881--46610983 Score: 127
Period size: 35 Copynumber: 3.0 Consensus size: 34
46610871 ATAGGTAAGT
46610881 ACATGTGAGCTTATATTGAACTTGTATATTCAGC
1 ACATGTGAGCTTATATTGAACTTGTATATTCAGC
* * **
46610915 AGCATGTGAGGTTATATTGAACTTG-AGTATTTGATT
1 A-CATGTGAGCTTATATTGAACTTGTA-TA-TTCAGC
*
46610951 ACATGTAAGCTTATATTGAACTTGTATATTCAG
1 ACATGTGAGCTTATATTGAACTTGTATATTCAG
46610984 TTATATGTGA
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
34 5 0.09
35 47 0.82
36 5 0.09
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (34 bp):
ACATGTGAGCTTATATTGAACTTGTATATTCAGC
Found at i:46617696 original size:47 final size:47
Alignment explanation
Indices: 46617642--46617851 Score: 339
Period size: 47 Copynumber: 4.4 Consensus size: 47
46617632 TTAGGATTTT
* *
46617642 ATGTGATGAATGTGAATGTGCATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
46617689 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCG
*
46617736 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTG-AA-TGTGTATATATGTGATAAGGCCTAATGGCCG
*
46617785 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCG
46617832 ATGTGATGAATGTGAATGTG
1 ATGTGATGAATGTGAATGTG
46617852 ACAGCCCTAA
Statistics
Matches: 149, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
47 104 0.70
48 4 0.03
49 41 0.28
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:46617773 original size:96 final size:95
Alignment explanation
Indices: 46617642--46617847 Score: 351
Period size: 96 Copynumber: 2.2 Consensus size: 95
46617632 TTAGGATTTT
*
46617642 ATGTGATGAATGTG-AATGTGCATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAAATGTACATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
46617706 GTGTATATATGTGATAAGGCCGAATGGCCA
66 GTGTATATATGTGATAAGGCCGAATGGCCA
* *
46617736 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAA-TGTACATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
46617801 AGTGTATATATGTGATAAGGCCTAATGGCCG
65 AGTGTATATATGTGATAAGGCCGAATGGCCA
46617832 ATGTGATGAATGTGAA
1 ATGTGATGAATGTGAA
46617848 TGTGACAGCC
Statistics
Matches: 105, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
94 14 0.13
95 2 0.02
96 89 0.85
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (95 bp):
ATGTGATGAATGTGAAATGTACATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:46619893 original size:40 final size:40
Alignment explanation
Indices: 46619656--46619879 Score: 296
Period size: 40 Copynumber: 5.6 Consensus size: 40
46619646 CGAATGATGT
* * * *
46619656 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
46619696 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
46619736 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
46619774 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
46619815 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
46619855 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
46619880 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
39 35 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:46619901 original size:119 final size:119
Alignment explanation
Indices: 46619655--46619912 Score: 310
Period size: 119 Copynumber: 2.2 Consensus size: 119
46619645 TCGAATGATG
* *
46619655 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* **
46619720 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * *
46619774 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* * *
46619837 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
46619894 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
46619913 TACGTGATTT
Statistics
Matches: 120, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.03
119 86 0.72
120 31 0.26
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:46621352 original size:49 final size:47
Alignment explanation
Indices: 46621271--46621486 Score: 288
Period size: 49 Copynumber: 4.5 Consensus size: 47
46621261 GGGTGTTACA
46621271 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
* * *
46621318 GTGAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
* * *
46621367 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAAT-G-GCCAATGTGATGAAT
* * * * *
46621416 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
46621463 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
46621487 TCCCGAAGGG
Statistics
Matches: 149, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
47 62 0.42
48 2 0.01
49 85 0.57
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
Found at i:46621383 original size:96 final size:96
Alignment explanation
Indices: 46621271--46621486 Score: 292
Period size: 96 Copynumber: 2.2 Consensus size: 96
46621261 GGGTGTTACA
*
46621271 GTGAAAGTGTATATATGTGATAAGGCCGAAT-G-GCCAATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATAGCCCCAATGTGATGAATGTGAAAGTG--TATAT
* * * *
46621334 ATGTGATAAGACCTAATGGCCGATGTGATGAAT
64 ATGTGACAAGACCGAATGGCCAACGTGATGAAT
* *
46621367 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCCCGATGTGATGAATGTGAAAGTGTATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATAGCCCCAATGTGATGAATGTGAAAGTGTATATAT
* * * *
46621432 GTGACAGGGCCGAGTGGCCAACGTGATGGAT
66 GTGACAAGACCGAATGGCCAACGTGATGAAT
*
46621463 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
46621487 TCCCGAAGGG
Statistics
Matches: 106, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
96 83 0.78
97 1 0.01
98 22 0.21
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (96 bp):
GTGAAAGTGTATATATGTGATAAGGCCGAATAGCCCCAATGTGATGAATGTGAAAGTGTATATAT
GTGACAAGACCGAATGGCCAACGTGATGAAT
Found at i:46627762 original size:72 final size:72
Alignment explanation
Indices: 46627640--46627776 Score: 177
Period size: 72 Copynumber: 1.9 Consensus size: 72
46627630 GCAACGACAG
* * * * * *
46627640 GTGAGACGGCAATGGCGGTGTGCGGAGACAATGTTGGTGCTTCGATAATCTTCTTGTAGCGACAA
1 GTGAGACGGCAATGGCGCTGTACGGAGACAACGTTGGTGCTTCGACAATCTTCTTGCAGCAACAA
46627705 CAATAGC
66 CAATAGC
** *
46627712 GTGAGACGGCAATGGTTCTGTACGGCA-ACAACGTTGGTGCTTCGGCAATCTTCTTGCAGCAACA
1 GTGAGACGGCAATGGCGCTGTACGG-AGACAACGTTGGTGCTTCGACAATCTTCTTGCAGCAACA
46627776 A
65 A
46627777 TAGGTGACTT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
72 54 0.98
73 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (72 bp):
GTGAGACGGCAATGGCGCTGTACGGAGACAACGTTGGTGCTTCGACAATCTTCTTGCAGCAACAA
CAATAGC
Found at i:46632023 original size:44 final size:43
Alignment explanation
Indices: 46631958--46632044 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 43
46631948 GTAGTTTGTT
*
46631958 CTGCAGGAATTCACTGCACTCCTTTGTCAAGGCAACAGTCTCA
1 CTGCAGGAATGCACTGCACTCCTTTGTCAAGGCAACAGTCTCA
*
46632001 NCTGCAGGAATGCACTGGACTCCTTTGTCAAGGCAACAGTCTCA
1 -CTGCAGGAATGCACTGCACTCCTTTGTCAAGGCAACAGTCTCA
46632045 TACTCACTCA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (43 bp):
CTGCAGGAATGCACTGCACTCCTTTGTCAAGGCAACAGTCTCA
Found at i:46634569 original size:15 final size:15
Alignment explanation
Indices: 46634549--46634581 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
46634539 ACAGGAATGT
46634549 GTTAGGTTTGAAATA
1 GTTAGGTTTGAAATA
*
46634564 GTTAGGTTTTAAATA
1 GTTAGGTTTGAAATA
46634579 GTT
1 GTT
46634582 TAATCACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (15 bp):
GTTAGGTTTGAAATA
Found at i:46653141 original size:28 final size:28
Alignment explanation
Indices: 46653099--46653155 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
46653089 ATCTTCGATG
* * *
46653099 TCTCGCACACTAAGTGTCATACTCAATA
1 TCTCACACACCAAGTATCATACTCAATA
* *
46653127 TCTCACACACCAAGTATCATTCTTAATA
1 TCTCACACACCAAGTATCATACTCAATA
46653155 T
1 T
46653156 TTTGCACGCT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.32
Consensus pattern (28 bp):
TCTCACACACCAAGTATCATACTCAATA
Found at i:46655410 original size:42 final size:42
Alignment explanation
Indices: 46655324--46655659 Score: 198
Period size: 42 Copynumber: 7.7 Consensus size: 42
46655314 TCGTTTACTT
*
46655324 GATGCCATAGT-CC-AACTATGGTCTTACA-AAAATTCTCACT-TC
1 GATGCCATA-TCCCAAAC-ATGGTCTTACACGAAA-TCTCA-TATC
* * * * *
46655366 GATGCCATGTCCCAGACATGGTCTTATATGAAATCACATATC
1 GATGCCATATCCCAAACATGGTCTTACACGAAATCTCATATC
* ** *
46655408 GATGCCGTATCCCAAACACAGTCTTACACGAAATCTCATATA
1 GATGCCATATCCCAAACATGGTCTTACACGAAATCTCATATC
* * * *
46655450 AAAGCCATATCCCAAATATGGTCTTACACGAAATCTCATACC
1 GATGCCATATCCCAAACATGGTCTTACACGAAATCTCATATC
* * * * *
46655492 AAAGCCATATCCCAGATATGGTCTTACACGTAATCTCATATC
1 GATGCCATATCCCAAACATGGTCTTACACGAAATCTCATATC
* * *
46655534 GATGGTGATGCCATATCCCAAATATGGTCTTACAC-AAGTTCCCATATC
1 ------GATGCCATATCCCAAACATGGTCTTACACGAA-ATCTCATATC
* * * * * *
46655582 GATGTTGATTCTATATCCCAGATATGGTCTTACA-TAGGATCTCATATT
1 GA---TG---CCATATCCCAAACATGGTCTTACACGA-AATCTCATATC
* *
46655630 GATGCCATGTCCCAGACATGGTCTTACACG
1 GATGCCATATCCCAAACATGGTCTTACACG
46655660 TATCACAATG
Statistics
Matches: 233, Mismatches: 41, Indels: 39
0.74 0.13 0.12
Matches are distributed among these distances:
41 2 0.01
42 155 0.67
43 5 0.02
45 4 0.02
47 1 0.00
48 66 0.28
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (42 bp):
GATGCCATATCCCAAACATGGTCTTACACGAAATCTCATATC
Found at i:46655551 original size:48 final size:46
Alignment explanation
Indices: 46655453--46655661 Score: 172
Period size: 48 Copynumber: 4.6 Consensus size: 46
46655443 TCATATAAAA
* * * *
46655453 GCCATATCCCAAATATGGTCTTACACGAAATCTCATA-CCA---AA
1 GCCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATTGAT
46655495 GCCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATGGTGAT
1 GCCATATCCCAGATATGGTCTTACACGTAATCTCATATCGAT--TGAT
* *
46655543 GCCATATCCCAAATATGGTCTTACAC--AAGTTCCCATATCGATGTTGAT
1 GCCATATCCCAGATATGGTCTTACACGTAA--TCTCATATCGA--TTGAT
* *
46655591 TCTATATCCCAGATATGGTCTTACA--TAGGATCTC--AT--ATTGAT
1 GCCATATCCCAGATATGGTCTTACACGTA--ATCTCATATCGATTGAT
* *
46655633 GCCATGTCCCAGACATGGTCTTACACGTA
1 GCCATATCCCAGATATGGTCTTACACGTA
46655662 TCACAATGCC
Statistics
Matches: 138, Mismatches: 14, Indels: 28
0.77 0.08 0.16
Matches are distributed among these distances:
42 61 0.44
43 2 0.01
44 3 0.02
46 4 0.03
48 66 0.48
50 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (46 bp):
GCCATATCCCAGATATGGTCTTACACGTAATCTCATATCGATTGAT
Found at i:46655724 original size:73 final size:72
Alignment explanation
Indices: 46655630--46655885 Score: 320
Period size: 73 Copynumber: 3.5 Consensus size: 72
46655620 ATCTCATATT
46655630 GATGCCAT-GTCCCAGAC-ATGGTCTTACACGTATCACAATGCCATAGCCCAGCTATGGTCTCAC
1 GATGCCATAG-CCCAG-CTATGGTCTTACACGTATCACAATGCCATAGCCCAGCTATGGTCTCAC
46655693 GTGTCATCAC
64 -TGTCATCAC
* * * *
46655703 GATGCCATAGCCCAGCTATGGTCTTACACATATCACAATGCCATAACACAGCTATGGTCTTACAT
1 GATGCCATAGCCCAGCTATGGTCTTACACGTATCACAATGCCATAGCCCAGCTATGGTCTCAC-T
46655768 GTCATCAC
65 GTCATCAC
** * * *
46655776 GATGCCATAGCCCAATTATGGTCTTGCACGTATCAAAATGCCATAGCCCAGCTATGGCCTTACAC
1 GATGCCATAGCCCAGCTATGGTCTTACACGTATCACAATGCCATAGCCCAGCTATGGTC-T-CAC
** *
46655841 ACT-ATTAC
64 TGTCATCAC
*
46655849 GATGCCATAGCCCAGCTATGGTCTTACACGTACCACA
1 GATGCCATAGCCCAGCTATGGTCTTACACGTATCACA
46655886 TGTATTGCCA
Statistics
Matches: 157, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
72 1 0.01
73 151 0.96
74 3 0.02
75 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (72 bp):
GATGCCATAGCCCAGCTATGGTCTTACACGTATCACAATGCCATAGCCCAGCTATGGTCTCACTG
TCATCAC
Found at i:46655875 original size:37 final size:36
Alignment explanation
Indices: 46655630--46655880 Score: 290
Period size: 37 Copynumber: 6.9 Consensus size: 36
46655620 ATCTCATATT
46655630 GATGCCAT-GTCCCAGAC-ATGGTCTTACACGTATCAC
1 GATGCCATAG-CCCAG-CTATGGTCTTACACGTATCAC
* * **
46655666 AATGCCATAGCCCAGCTATGGTCTCACGTGTCATCAC
1 GATGCCATAGCCCAGCTATGGTCTTACACGT-ATCAC
*
46655703 GATGCCATAGCCCAGCTATGGTCTTACACATATCAC
1 GATGCCATAGCCCAGCTATGGTCTTACACGTATCAC
* * * *
46655739 AATGCCATAACACAGCTATGGTCTTACATGTCATCAC
1 GATGCCATAGCCCAGCTATGGTCTTACACGT-ATCAC
** * *
46655776 GATGCCATAGCCCAATTATGGTCTTGCACGTATCAA
1 GATGCCATAGCCCAGCTATGGTCTTACACGTATCAC
* * * *
46655812 AATGCCATAGCCCAGCTATGGCCTTACACACTATTAC
1 GATGCCATAGCCCAGCTATGGTCTTACAC-GTATCAC
46655849 GATGCCATAGCCCAGCTATGGTCTTACACGTA
1 GATGCCATAGCCCAGCTATGGTCTTACACGTA
46655881 CCACATGTAT
Statistics
Matches: 177, Mismatches: 33, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
35 1 0.01
36 84 0.47
37 92 0.52
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (36 bp):
GATGCCATAGCCCAGCTATGGTCTTACACGTATCAC
Found at i:46659655 original size:24 final size:24
Alignment explanation
Indices: 46659628--46659728 Score: 184
Period size: 24 Copynumber: 4.2 Consensus size: 24
46659618 AAGGCTGTCA
*
46659628 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
46659652 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
46659676 GGAGAGGATGTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
46659700 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
46659724 GGAGA
1 GGAGA
46659729 ACGGTGTTGG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 74 1.00
ACGTcount: A:0.35, C:0.04, G:0.43, T:0.19
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:46662395 original size:40 final size:40
Alignment explanation
Indices: 46662351--46662570 Score: 311
Period size: 40 Copynumber: 5.5 Consensus size: 40
46662341 CGGGTTAGGC
* *
46662351 CCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGTTAAGT
1 CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGT
* *
46662391 CCCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAG-
1 CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGT
* * *
46662430 CCCGAAGGCATTGGTGTGAGTTACTAAATCCGGGTTAAGT
1 CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGT
*
46662470 CCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGT
1 CCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGT
*
46662510 CCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGT
1 CCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGT
*
46662550 CCCGAAGGCATTTGAGCGAGT
1 CCCGAAGGCATTTGTGCGAGT
46662571 AGCTATATCC
Statistics
Matches: 164, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 34 0.21
40 128 0.78
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGT
Found at i:46662482 original size:79 final size:80
Alignment explanation
Indices: 46662351--46662570 Score: 320
Period size: 79 Copynumber: 2.8 Consensus size: 80
46662341 CGGGTTAGGC
*
46662351 CCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
**
46662416 A-ATTTCGGGCTAAG-
66 ATA-ACCGGGCTAAGT
* *
46662430 CCCGAAGGCATTGGTGTGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
46662495 ATAACCGGGCTATGT
66 ATAACCGGGCTAAGT
* * *
46662510 CCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGT
46662571 AGCTATATCC
Statistics
Matches: 127, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
79 71 0.56
80 54 0.43
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
ATAACCGGGCTAAGT
Found at i:46662532 original size:119 final size:120
Alignment explanation
Indices: 46662338--46662561 Score: 337
Period size: 119 Copynumber: 1.9 Consensus size: 120
46662328 TTCAAATGAT
* *
46662338 ATCCGGGTTAGGCCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGCTAAGTCCCGAAGGCATT
**
46662403 TGTGCGAGTTACTA-ATTTCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAA
66 TGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCATTGGTGTGAGTTACTAA
* * *
46662457 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCAT
1 ATCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGAGCTAAGTCCCGAAGGCAT
*
46662521 TTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
65 TTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATT
46662562 TGAGCGAGTA
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
119 79 0.84
120 15 0.16
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
ATCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGCTAAGTCCCGAAGGCATT
TGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTGGTGTGAGTTACTAA
Found at i:46662585 original size:119 final size:119
Alignment explanation
Indices: 46662336--46662586 Score: 330
Period size: 119 Copynumber: 2.1 Consensus size: 119
46662326 TGTTCAAATG
* *
46662336 ATATCCGGGTTAGGCCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGTTAAGTCCCGAAGGCA
1 ATATCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGCTAAGTCCCGAAGGCA
** * *
46662401 TTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACT
66 TTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAGCGAGTTACT
* * * *
46662455 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGC
1 ATATCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGAGCTAAGTCCCGAAGGC
* *
46662519 ATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
65 ATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAGCGAGTTA-CT
46662575 ATATCC-GGTTAA
1 ATATCCGGGTTAA
46662587 ATTTCGAAGG
Statistics
Matches: 115, Mismatches: 13, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
118 2 0.02
119 87 0.76
120 26 0.23
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (119 bp):
ATATCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAGCGAGTTACT
Found at i:46665914 original size:39 final size:39
Alignment explanation
Indices: 46665828--46666119 Score: 539
Period size: 39 Copynumber: 7.5 Consensus size: 39
46665818 TTATAGTAAT
* * * *
46665828 TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC
1 TCGCACAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATC
46665868 TCGCACAAATGCCTTCGGGCTTAGCCCGAAATTAGTATC
1 TCGCACAAATGCCTTCGGGCTTAGCCCGAAATTAGTATC
46665907 TCGCACAAATGCCTTCGGGCTTAGCCCGAAATTAGTATC
1 TCGCACAAATGCCTTCGGGCTTAGCCCGAAATTAGTATC
46665946 TCGCACAAATGCCTTCGGGCTTAGCCCGAAATTAGTATC
1 TCGCACAAATGCCTTCGGGCTTAGCCCGAAATTAGTATC
46665985 TCGCACAAATGCCTTCGGGCTTAGCCCGAAATTAGTATC
1 TCGCACAAATGCCTTCGGGCTTAGCCCGAAATTAGTATC
46666024 TCGCACAAATGCCTTCGGGCTTAGCCCGAAATTAGTATC
1 TCGCACAAATGCCTTCGGGCTTAGCCCGAAATTAGTATC
46666063 TCGCACAAATGCCTTCGGGCTTAGCCCGAAATTAGTATC
1 TCGCACAAATGCCTTCGGGCTTAGCCCGAAATTAGTATC
46666102 TCGCACAAATGCCTTCGG
1 TCGCACAAATGCCTTCGG
46666120 ATCTTAGTCC
Statistics
Matches: 248, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
39 229 0.92
40 19 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
TCGCACAAATGCCTTCGGGCTTAGCCCGAAATTAGTATC
Found at i:46673459 original size:40 final size:40
Alignment explanation
Indices: 46673415--46673676 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
46673405 GCTCCTCGTT
* *
46673415 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
46673455 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
46673495 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
46673534 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
46673573 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
46673612 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
46673653 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46673677 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:46675475 original size:54 final size:53
Alignment explanation
Indices: 46675391--46675501 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 53
46675381 AGGAAGCGTC
*
46675391 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACAT-TATCTATT
* * * *
46675445 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATTATCTATT
46675498 CTGG
1 CTGG
46675502 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
53 11 0.21
54 41 0.79
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATTATCTATT
Found at i:46675498 original size:26 final size:26
Alignment explanation
Indices: 46675391--46675501 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
46675381 AGGAAGCGTC
*
46675391 CTGGTGGCTA-TGCCACAATTATCTGAT
1 CTGGTGGC-ACTGCCAC-ATTATCTGTT
*
46675418 CTGGTGGCACTGCCACATATATCTATT
1 CTGGTGGCACTGCCACAT-TATCTGTT
*
46675445 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCACTGCCAC-ATTATCTGTT
* *
46675472 CTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCACTGCCACATTATCTGTT
46675498 CTGG
1 CTGG
46675502 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.23
27 55 0.74
28 2 0.03
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (26 bp):
CTGGTGGCACTGCCACATTATCTGTT
Found at i:46677942 original size:16 final size:16
Alignment explanation
Indices: 46677921--46677953 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
46677911 TATGGACTTG
46677921 CCTTTAGTTGAATTTT
1 CCTTTAGTTGAATTTT
*
46677937 CCTTTAGTTTAATTTT
1 CCTTTAGTTGAATTTT
46677953 C
1 C
46677954 TTATAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.15, G:0.09, T:0.58
Consensus pattern (16 bp):
CCTTTAGTTGAATTTT
Found at i:46680642 original size:12 final size:12
Alignment explanation
Indices: 46680625--46680650 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46680615 AAAATTAATC
46680625 AAAATTAATTAT
1 AAAATTAATTAT
46680637 AAAATTAATTAT
1 AAAATTAATTAT
46680649 AA
1 AA
46680651 TTCAACATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AAAATTAATTAT
Found at i:46683738 original size:17 final size:18
Alignment explanation
Indices: 46683711--46683746 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
46683701 AATCAAATAT
46683711 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
46683729 ATGC-TATTAATTTATTA
1 ATGCATATTAAATTATTA
46683746 A
1 A
46683747 AACATTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.47
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:46683941 original size:30 final size:29
Alignment explanation
Indices: 46683907--46683964 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
46683897 TTTCTGAAAA
* *
46683907 TATTTACAAAAAGAGGCACCTAATTTTTAT
1 TATTTACAAAAAGA-GCAACTAAATTTTAT
*
46683937 TATTTACTAAAAGAGCAACTAAATTTTA
1 TATTTACAAAAAGAGCAACTAAATTTTA
46683965 AAATTAATTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (29 bp):
TATTTACAAAAAGAGCAACTAAATTTTAT
Found at i:46687575 original size:28 final size:28
Alignment explanation
Indices: 46687544--46687598 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
46687534 ATCACAAAGT
* *
46687544 CAGCAGGAAAGATAAATTTGTCTACACG
1 CAGCAGGAAAGATAAAATTGCCTACACG
46687572 CAGCAGGAAAGATAAAATTGCCTACAC
1 CAGCAGGAAAGATAAAATTGCCTACAC
46687599 ATACCAATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (28 bp):
CAGCAGGAAAGATAAAATTGCCTACACG
Found at i:46690676 original size:22 final size:22
Alignment explanation
Indices: 46690632--46690676 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
46690622 GTGATGTCTT
*
46690632 TGTTTGCAGGTTTACATGGATA
1 TGTTTGCAGGTTTACATGCATA
* * *
46690654 TGTTTGCATGTTTATATTCATA
1 TGTTTGCAGGTTTACATGCATA
46690676 T
1 T
46690677 CTCTGCTACT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.22, C:0.09, G:0.20, T:0.49
Consensus pattern (22 bp):
TGTTTGCAGGTTTACATGCATA
Found at i:46695142 original size:47 final size:47
Alignment explanation
Indices: 46695024--46695430 Score: 716
Period size: 47 Copynumber: 8.7 Consensus size: 47
46695014 GGATGGTTGA
* * *
46695024 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAG
46695072 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
46695117 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
46695164 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
46695211 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
46695258 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
46695305 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
46695352 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
46695399 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
46695431 ACTTATGGGC
Statistics
Matches: 351, Mismatches: 3, Indels: 11
0.96 0.01 0.03
Matches are distributed among these distances:
42 2 0.01
43 5 0.01
45 3 0.01
46 29 0.08
47 311 0.89
48 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46702987 original size:93 final size:93
Alignment explanation
Indices: 46702828--46702998 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
46702818 GGATGGCTGA
* * * *
46702828 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATAGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCCTTAAGTTGAGTCCGAGTTCACTTATAGATGCGAACGTCCGAACTCGTTGAGT
46702893 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
46702921 GCATCCGAACTCCTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCCTTAAGTTGAGTCCGAGTTCACTTATAGATGCGAACGTC-CGAACTCGTTGAG
46702985 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
46702999 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCCTTAAGTTGAGTCCGAGTTCACTTATAGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46703005 original size:46 final size:47
Alignment explanation
Indices: 46702831--46703006 Score: 193
Period size: 46 Copynumber: 3.8 Consensus size: 47
46702821 TGGCTGAGCA
* * *
46702831 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATAGATGCGAATG-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
46702877 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
* *
46702923 ATCCGAACTCCTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
46702971 T-CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46703007 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.56
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:46706730 original size:29 final size:29
Alignment explanation
Indices: 46706668--46706824 Score: 212
Period size: 29 Copynumber: 5.5 Consensus size: 29
46706658 ATAGTAAGTC
*
46706668 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
46706696 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
46706725 CTCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
46706754 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
46706782 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
46706811 CGCACACTTAGTGC
1 CGCACACTTAGTGC
46706825 CAATCTCATG
Statistics
Matches: 115, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
28 39 0.34
29 74 0.64
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:46706777 original size:57 final size:58
Alignment explanation
Indices: 46706669--46706824 Score: 212
Period size: 57 Copynumber: 2.7 Consensus size: 58
46706659 TAGTAAGTCC
*
46706669 GCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCT
1 GCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT-T
*
46706727 -CACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACTT
1 GCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTT
* * * *
46706783 GCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 GCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
46706825 CAATCTCATG
Statistics
Matches: 89, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
56 1 0.01
57 57 0.64
58 31 0.35
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
GCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTT
Found at i:46707289 original size:12 final size:12
Alignment explanation
Indices: 46707272--46707297 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46707262 TGGGCATACT
46707272 TATGTATATATA
1 TATGTATATATA
46707284 TATGTATATATA
1 TATGTATATATA
46707296 TA
1 TA
46707298 CTTCCGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:46709918 original size:40 final size:39
Alignment explanation
Indices: 46709824--46709995 Score: 150
Period size: 40 Copynumber: 4.3 Consensus size: 39
46709814 TACTCGAATG
*
46709824 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCT-AGTGACT
* * * * *
46709865 ACATCTGGACTAAGATCCGAAGGAATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACT
* *
46709905 ATATCCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTC-CGAAGGCATTTGTGCTAGTGACT
* * * * * **
46709945 ATATCCAGGTTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACT
46709984 ATATCC-GGCTAA
1 ATATCCGGGCTAA
46709996 ACCCCGAAGA
Statistics
Matches: 105, Mismatches: 23, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
38 5 0.05
39 17 0.16
40 55 0.52
41 27 0.26
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
Found at i:46715970 original size:30 final size:30
Alignment explanation
Indices: 46715936--46715994 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
46715926 CCATGGTTCA
46715936 AATCTTTGCTATGTCATGGGGATGATATTC
1 AATCTTTGCTATGTCATGGGGATGATATTC
*
46715966 AATCTTTGCTATGTTATGGGGATGATATT
1 AATCTTTGCTATGTCATGGGGATGATATT
46715995 AGGCCTAGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.42
Consensus pattern (30 bp):
AATCTTTGCTATGTCATGGGGATGATATTC
Found at i:46717100 original size:40 final size:40
Alignment explanation
Indices: 46717006--46717150 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
46716996 TACTCGAATG
*
46717006 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
*
46717047 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
46717087 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
46717127 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
46717151 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.67
41 29 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:46718580 original size:17 final size:16
Alignment explanation
Indices: 46718558--46718590 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
46718548 AGCCAGTGTA
46718558 GGGAACTCGAGATTTG
1 GGGAACTCGAGATTTG
46718574 NGGGAACTCGAGATTTG
1 -GGGAACTCGAGATTTG
46718591 TTAAACCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.12, G:0.36, T:0.24
Consensus pattern (16 bp):
GGGAACTCGAGATTTG
Found at i:46723618 original size:46 final size:46
Alignment explanation
Indices: 46723562--46723737 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
46723552 TGGTTGAGCA
*
46723562 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
46723608 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
**
46723653 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
46723701 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46723738 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 6 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:46723718 original size:93 final size:93
Alignment explanation
Indices: 46723559--46723730 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
46723549 GGATGGTTGA
* ** *
46723559 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAACTCGTTGAGT
46723624 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
46723652 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAACTCGTTGAGT
46723717 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
46723731 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46726432 original size:23 final size:23
Alignment explanation
Indices: 46726405--46727265 Score: 551
Period size: 23 Copynumber: 37.7 Consensus size: 23
46726395 TGGTGAATGC
*
46726405 AAATTGAAGTGTTTAAATGTTGT
1 AAATTGAAGTGTTTAAATGCTGT
* **
46726428 TAATTG-AGATG-TTAAAGTGCTAC
1 AAATTGAAG-TGTTTAAA-TGCTGT
*
46726451 AAATTGAAGTGTTTAAATGCTTT
1 AAATTGAAGTGTTTAAATGCTGT
* * *
46726474 AAATTAAAGTGCTTAAATGTTGT
1 AAATTGAAGTGTTTAAATGCTGT
* * * * *
46726497 AAATTAAAGTGTTGAAGTACTGC
1 AAATTGAAGTGTTTAAATGCTGT
** *
46726520 AAATTGAAGTGTTTAGTTGCTGG
1 AAATTGAAGTGTTTAAATGCTGT
*
46726543 AAATTG-AGATGTTT-TATCGCTGT
1 AAATTGAAG-TGTTTAAAT-GCTGT
* * *
46726566 -AATTGAGGTGTATAAATGTTGT
1 AAATTGAAGTGTTTAAATGCTGT
*
46726588 TAATTG-AGATG-TTAAAGTG-TAGT
1 AAATTGAAG-TGTTTAAA-TGCT-GT
* *
46726611 AAATTGAATTGTTTAAATGTTGT
1 AAATTGAAGTGTTTAAATGCTGT
* *
46726634 AAATTGAAGTGCTTAAATGTTGT
1 AAATTGAAGTGTTTAAATGCTGT
* *
46726657 AAATTGAAGTGTTTAAGTGCTGC
1 AAATTGAAGTGTTTAAATGCTGT
** *
46726680 AAATTGAAGTGTTTAGTTGCTGG
1 AAATTGAAGTGTTTAAATGCTGT
*
46726703 AAATTG-AGATGTTT-TATCGCTGT
1 AAATTGAAG-TGTTTAAAT-GCTGT
* * *
46726726 -AATTGAGGTGTATAAATGTTGT
1 AAATTGAAGTGTTTAAATGCTGT
* * *
46726748 TAATTG-AGATG-TTAAAGTGCAGC
1 AAATTGAAG-TGTTTAAA-TGCTGT
* * *
46726771 AAATTGAAGAG-TTAAAGTGTTGC
1 AAATTGAAGTGTTTAAA-TGCTGT
*
46726794 AAATTGAAATG-TTAAAGTGCTAG-
1 AAATTGAAGTGTTTAAA-TGCT-GT
*
46726817 AAATTGAAGTGTTTAAATGCTAT
1 AAATTGAAGTGTTTAAATGCTGT
* *
46726840 AAATTGAAGTGCTTAAATGTTGT
1 AAATTGAAGTGTTTAAATGCTGT
* ** *
46726863 AAATTGAAGTGTTTAAGTATTGC
1 AAATTGAAGTGTTTAAATGCTGT
** * *
46726886 AAATTGAAGTGTTTAGTTCCTGG
1 AAATTGAAGTGTTTAAATGCTGT
* *
46726909 AAATTG-AGATGTTT-TATCACTGT
1 AAATTGAAG-TGTTTAAAT-GCTGT
* * *
46726932 -AATTGAGGTGTATAAATGTTGT
1 AAATTGAAGTGTTTAAATGCTGT
* **
46726954 TAATTGATA-TG-TTAAAGTGCTAC
1 AAATTGA-AGTGTTTAAA-TGCTGT
*
46726977 AAATTGAAGTGTTTAAATGGTGT
1 AAATTGAAGTGTTTAAATGCTGT
*
46727000 AAATTGAAGTG-TTAAAGTGCTGC
1 AAATTGAAGTGTTTAAA-TGCTGT
* *
46727023 AAATTGAAGTGTTTGAATGTTGT
1 AAATTGAAGTGTTTAAATGCTGT
*
46727046 AAATTGAAGTGTTTAAATGTTGT
1 AAATTGAAGTGTTTAAATGCTGT
* * *
46727069 AAATTGAAGTGTTTAAGTACTGC
1 AAATTGAAGTGTTTAAATGCTGT
** * *
46727092 AAATTGAAGTGTTTAGTTACTGG
1 AAATTGAAGTGTTTAAATGCTGT
*
46727115 AAATTG-AGATGTTT-TATCGCTGT
1 AAATTGAAG-TGTTTAAAT-GCTGT
* * *
46727138 -AATTGAGGAGTATAAATG-TGGT
1 AAATTGAAGTGTTTAAATGCT-GT
* *
46727160 TAATTG-AGATG-TTAAAGTGCTGC
1 AAATTGAAG-TGTTTAAA-TGCTGT
46727183 AAATTGAAGTGTTTAAATGCTGT
1 AAATTGAAGTGTTTAAATGCTGT
*
46727206 AAATTG--GTG-TTAAAGTGCTGC
1 AAATTGAAGTGTTTAAA-TGCTGT
*
46727227 AAATTGAAGTGTTTAAATGGTGT
1 AAATTGAAGTGTTTAAATGCTGT
*
46727250 AAATTGAAGTTTTTAA
1 AAATTGAAGTGTTTAA
46727266 GTACTACAAA
Statistics
Matches: 661, Mismatches: 125, Indels: 104
0.74 0.14 0.12
Matches are distributed among these distances:
20 5 0.01
21 15 0.02
22 94 0.14
23 503 0.76
24 44 0.07
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (23 bp):
AAATTGAAGTGTTTAAATGCTGT
Found at i:46726682 original size:160 final size:160
Alignment explanation
Indices: 46726406--46726850 Score: 666
Period size: 160 Copynumber: 2.8 Consensus size: 160
46726396 GGTGAATGCA
* *
46726406 AATTGAAGTGTTTAAATGTTGTTAATTGAGATGTTAAAGTGCTA-CAAATTGAAGTGTTTAAATG
1 AATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTG-TAGCAAATTGAAGTGTTTAAATG
* * * *
46726470 CTT-TAAATTAAAGTGCTTAAATGTTGTAAATTAAAGTGTTGAAGTACTGCAAATTGAAGTGTTT
65 -TTGTAAATTGAAGTGCTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTT
46726534 AGTTGCTGGAAATTGAGATGTTTTATCGCTGT
129 AGTTGCTGGAAATTGAGATGTTTTATCGCTGT
* *
46726566 AATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGTAGTAAATTGAATTGTTTAAATGT
1 AATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGTAGCAAATTGAAGTGTTTAAATGT
46726631 TGTAAATTGAAGTGCTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAG
66 TGTAAATTGAAGTGCTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAG
46726696 TTGCTGGAAATTGAGATGTTTTATCGCTGT
131 TTGCTGGAAATTGAGATGTTTTATCGCTGT
* *
46726726 AATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGCAGCAAATTGAAGAG-TTAAAGTG
1 AATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGTAGCAAATTGAAGTGTTTAAA-TG
* * * * **
46726790 TTGCAAATTGAAATG-TTAAAGTGCTAG-AAATTGAAGTGTTTAAATGCTATAAATTGAAGTG
65 TTGTAAATTGAAGTGCTTAAA-TG-TTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTG
46726851 CTTAAATGTT
Statistics
Matches: 262, Mismatches: 18, Indels: 10
0.90 0.06 0.03
Matches are distributed among these distances:
159 14 0.05
160 246 0.94
161 2 0.01
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.38
Consensus pattern (160 bp):
AATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGTAGCAAATTGAAGTGTTTAAATGT
TGTAAATTGAAGTGCTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAG
TTGCTGGAAATTGAGATGTTTTATCGCTGT
Found at i:46726808 original size:206 final size:206
Alignment explanation
Indices: 46726566--46727259 Score: 1067
Period size: 206 Copynumber: 3.4 Consensus size: 206
46726556 TTATCGCTGT
* * * * * * *
46726566 AATTGAGGTGTATAAATGTTGTTAATTGAGATGTTAAAGTG-TAGTAAATTGAATTGTTTAAATG
1 AATTGAAGTGTTTAAATGCTGTAAATTGAAATGTTAAAGTGCT-GCAAATTGAAGTGTTTAAATG
*
46726630 TTGTAAATTGAAGTGCTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTA
65 TTGTAAATTGAAGTGCTTAAATGTTGTAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTA
*
46726695 GTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGT
130 GTTACTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGT
46726760 TAAAGTGCAGCA
195 TAAAGTGCAGCA
* * *
46726772 AATTGAAGAG-TTAAAGTGTTGCAAATTGAAATGTTAAAGTGCTAG-AAATTGAAGTGTTTAAAT
1 AATTGAAGTGTTTAAA-TGCTGTAAATTGAAATGTTAAAGTGCT-GCAAATTGAAGTGTTTAAAT
* * *
46726835 GCTATAAATTGAAGTGCTTAAATGTTGTAAATTGAAGTGTTTAAGTATTGCAAATTGAAGTGTTT
64 GTTGTAAATTGAAGTGCTTAAATGTTGTAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTT
* * *
46726900 AGTTCCTGGAAATTGAGATGTTTTATCACTGTAATTGAGGTGTATAAATGTTGTTAATTGATATG
129 AGTTACTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATG
46726965 TTAAAGTGCTA-CA
194 TTAAAGTGC-AGCA
* * *
46726978 AATTGAAGTGTTTAAATGGTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTGAATGT
1 AATTGAAGTGTTTAAATGCTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGT
*
46727043 TGTAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
66 TGTAAATTGAAGTGCTTAAATGTTGTAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
* *
46727108 TTACTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGAGTATAAATGTGGTTAATTGAGATGTT
131 TTACTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTT
*
46727173 AAAGTGCTGCA
196 AAAGTGCAGCA
* *
46727184 AATTGAAGTGTTTAAATGCTGTAAATTG--GTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGG
1 AATTGAAGTGTTTAAATGCTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGT
46727247 TGTAAATTGAAGT
66 TGTAAATTGAAGT
46727260 TTTTAAGTAC
Statistics
Matches: 450, Mismatches: 32, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
204 46 0.10
205 5 0.01
206 390 0.87
207 9 0.02
ACGTcount: A:0.33, C:0.04, G:0.24, T:0.38
Consensus pattern (206 bp):
AATTGAAGTGTTTAAATGCTGTAAATTGAAATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGT
TGTAAATTGAAGTGCTTAAATGTTGTAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
TTACTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGAGATGTT
AAAGTGCAGCA
Found at i:46728081 original size:43 final size:41
Alignment explanation
Indices: 46727976--46728229 Score: 276
Period size: 43 Copynumber: 6.0 Consensus size: 41
46727966 TCTAGTGGCG
*
46727976 GTTTTGGGAAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGC
1 GTTTTGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGC
* * * *
46728017 GTTTTTGGGAAAGCGTCGCTAAAAGTCAGGTTTTTTAGCGGC
1 G-TTTTGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGC
46728059 GTTTGTGGAGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGC
1 GTTT-TGG-GAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGC
* * *
46728102 GTTTTTAGGAAAAGTGCCAG-TAAAGGTCATGTTCTTTAGCGGTA
1 G-TTTT-GGGAAAGCGCC-GCTAAAGGTCATGTTCTTTAGCGG-C
* * * *
46728146 TTTTTGAGAAAAGTGCCGCTAAAGGTCATGTTCTTTAGCAGC
1 GTTTTG-GGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGC
* * *
46728188 GTTTGTGGGAAAAGCGCTGCTAAAAGTCATGTTCTATAGCGG
1 GTTT-TGGG-AAAGCGCCGCTAAAGGTCATGTTCTTTAGCGG
46728230 TATTTTTTCA
Statistics
Matches: 180, Mismatches: 22, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
41 4 0.02
42 45 0.25
43 125 0.69
44 6 0.03
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (41 bp):
GTTTTGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGC
Found at i:46728199 original size:86 final size:85
Alignment explanation
Indices: 46727977--46728236 Score: 339
Period size: 86 Copynumber: 3.0 Consensus size: 85
46727967 CTAGTGGCGG
46727977 TTTTGG-GAAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGG-AAAGCGTCGCTAAA
1 TTTTGGAGAAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGCG-CGCTAAA
* * **
46728040 AGTCAGGTTTTTTAGCGGCGT
65 AGTCATGTTCTTTAGCGGTAT
* * * *
46728061 TTGTGGAGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTAGGAAAAGTGC-CAGTAA
1 TTTTGGAGAAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCGC--TAA
*
46728125 AGGTCATGTTCTTTAGCGGTAT
64 AAGTCATGTTCTTTAGCGGTAT
* *
46728147 TTTT-GAGAAAAGTGCCGCTAAAGGTCATGTTCTTTAGCAGCGTTTGTGGGAAAAGCGCTGCTAA
1 TTTTGGAG-AAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGC-GCTAA
*
46728211 AAGTCATGTTCTATAGCGGTAT
64 AAGTCATGTTCTTTAGCGGTAT
46728233 TTTT
1 TTTT
46728237 TCACAAATGC
Statistics
Matches: 152, Mismatches: 17, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
84 6 0.04
85 45 0.30
86 100 0.66
88 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (85 bp):
TTTTGGAGAAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGCGCGCTAAAA
GTCATGTTCTTTAGCGGTAT
Found at i:46728217 original size:129 final size:128
Alignment explanation
Indices: 46727984--46728229 Score: 343
Period size: 129 Copynumber: 1.9 Consensus size: 128
46727974 CGGTTTTGGG
* * *
46727984 AAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAGCGTCGCTAAAAGTCAGGTT
1 AAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGCATTTTTGGAAAAGCGCCGCTAAAAGTCAGGTT
* * * *
46728049 TTTTAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTAGGA
66 CTTTAGCAGCGTTTGTGGAGAAAGCGCCGCTAAAAGTCATGTTCTATAGCGGCGTTTTTAGGA
* * * *
46728112 AAAGTGCCAG-TAAAGGTCATGTTCTTTAGCGGTATTTTTGAGAAAAGTGCCGCTAAAGGTCATG
1 AAAGTGCC-GCTAAAGGTCATGTTCTTTAGCGGCATTTTTG-GAAAAGCGCCGCTAAAAGTCAGG
*
46728176 TTCTTTAGCAGCGTTTGTGG-GAAAAGCGCTGCTAAAAGTCATGTTCTATAGCGG
64 TTCTTTAGCAGCGTTTGTGGAG-AAAGCGCCGCTAAAAGTCATGTTCTATAGCGG
46728230 TATTTTTTCA
Statistics
Matches: 103, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
128 37 0.36
129 66 0.64
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (128 bp):
AAAGTGCCGCTAAAGGTCATGTTCTTTAGCGGCATTTTTGGAAAAGCGCCGCTAAAAGTCAGGTT
CTTTAGCAGCGTTTGTGGAGAAAGCGCCGCTAAAAGTCATGTTCTATAGCGGCGTTTTTAGGA
Found at i:46737836 original size:30 final size:30
Alignment explanation
Indices: 46737779--46737837 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
46737769 CCCTTTTGAA
* * *
46737779 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAAAGACACCAAATTTTT
46737809 AATATTTACAAAAAAAG-CAACCAAATTTT
1 AATATTTACAAAAAAAGAC-ACCAAATTTT
46737838 GAAAATAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAAAGACACCAAATTTTT
Found at i:46742921 original size:43 final size:41
Alignment explanation
Indices: 46742782--46742925 Score: 123
Period size: 43 Copynumber: 3.4 Consensus size: 41
46742772 TGCCAATGTC
*
46742782 CCAGACGTGGTCTTACATGTAATCACATATCAATGCCACTAT
1 CCAGACGTGGTCTTACATGTAATCACATATCGATGCCAC-AT
* * ** **
46742824 CCCGAACAG-GGTCTTACATG-AATCAAATA-CGATGTTGATGT
1 CCAG-AC-GTGGTCTTACATGTAATCACATATCGATG-CCACAT
* *
46742865 CCCAAACATGGTCTTACATGTAATCACATATCGATGCCAACAT
1 -CCAGACGTGGTCTTACATGTAATCACATATCGATGCC-ACAT
46742908 CCTAGACGTGGTCTTACA
1 CC-AGACGTGGTCTTACA
46742926 CGAGAACACA
Statistics
Matches: 76, Mismatches: 17, Indels: 17
0.69 0.15 0.15
Matches are distributed among these distances:
41 18 0.24
42 24 0.32
43 33 0.43
44 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (41 bp):
CCAGACGTGGTCTTACATGTAATCACATATCGATGCCACAT
Found at i:46743264 original size:15 final size:16
Alignment explanation
Indices: 46743240--46743283 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
46743230 TTTCTTGATC
* *
46743240 TAAACATATTCAAA-T
1 TAAACTTATTCAAACA
46743255 TAAACTTATTCAAACA
1 TAAACTTATTCAAACA
*
46743271 TAAATTTATTCAA
1 TAAACTTATTCAA
46743284 TTTAGTCCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (16 bp):
TAAACTTATTCAAACA
Found at i:46747752 original size:23 final size:24
Alignment explanation
Indices: 46747722--46747766 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
46747712 TCTTTGTTTA
46747722 ACTGAA-TTCTGGACTCCCTATTT
1 ACTGAATTTCTGGACTCCCTATTT
* *
46747745 ACTGAATTTTTGGAGTCCCTAT
1 ACTGAATTTCTGGACTCCCTAT
46747767 ACTATTTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (24 bp):
ACTGAATTTCTGGACTCCCTATTT
Found at i:46748619 original size:27 final size:27
Alignment explanation
Indices: 46748578--46748693 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 27
46748568 CAATTTGAAG
* * *
46748578 AAATGTCTATATTGCCCTAATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* *
46748605 AAATGACTATTTTGCCCCTATCTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* ** *
46748632 AAATGACTGTTTTAACCTTATGAGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
** *
46748659 AAATGGTTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
46748686 AAATGACT
1 AAATGACT
46748694 GAAATGGCCT
Statistics
Matches: 71, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATGTGGTA
Found at i:46771023 original size:34 final size:33
Alignment explanation
Indices: 46770964--46771029 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 33
46770954 TAGCCAAATA
*
46770964 AGTGTGGGCCTTAGCCCACTACAGTAACAGTATT
1 AGTGTGGGCCTTAGCCCAATACAGT-ACAGTATT
*
46770998 AGTGTGGGCCTTAGCCCAATTCAGTACAGTAT
1 AGTGTGGGCCTTAGCCCAATACAGTACAGTAT
46771030 CAAAGATGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 7 0.23
34 23 0.77
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (33 bp):
AGTGTGGGCCTTAGCCCAATACAGTACAGTATT
Found at i:46771093 original size:22 final size:23
Alignment explanation
Indices: 46771054--46771096 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
46771044 GAGATCCTAC
*
46771054 CCATCCATCCTCTACACTCCACT
1 CCATCCAACCTCTACACTCCACT
46771077 CCATCCAACC-CTACACTCCA
1 CCATCCAACCTCTACACTCCA
46771097 TGTGGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.26, C:0.53, G:0.00, T:0.21
Consensus pattern (23 bp):
CCATCCAACCTCTACACTCCACT
Found at i:46772406 original size:24 final size:23
Alignment explanation
Indices: 46772361--46772406 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
46772351 ATTCCAACAT
*
46772361 GAAAAGAAAGGCATAGAGAAAAA
1 GAAAAGAAAGGCATAGAAAAAAA
46772384 GAAAAGAGAAGGCGA-AGAAAAAA
1 GAAAAGA-AAGGC-ATAGAAAAAA
46772407 GGTGCTCGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 12 0.60
25 1 0.05
ACGTcount: A:0.65, C:0.04, G:0.28, T:0.02
Consensus pattern (23 bp):
GAAAAGAAAGGCATAGAAAAAAA
Found at i:46773292 original size:21 final size:21
Alignment explanation
Indices: 46773266--46773306 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
46773256 TCAGCATGAC
46773266 CATGTT-CCAGTTCCACACGGG
1 CATGTTGCCAG-TCCACACGGG
*
46773287 CATGTTGCCCGTCCACACGG
1 CATGTTGCCAGTCCACACGG
46773307 ACGTGTGCCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.17, C:0.37, G:0.24, T:0.22
Consensus pattern (21 bp):
CATGTTGCCAGTCCACACGGG
Found at i:46773441 original size:11 final size:11
Alignment explanation
Indices: 46773414--46773447 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
46773404 CCAAGATAAG
46773414 AAGTTTTAAACA
1 AAGTTTTAAA-A
*
46773426 AAGTTTGAAAA
1 AAGTTTTAAAA
46773437 AAGTTTTAAAA
1 AAGTTTTAAAA
46773448 TTGACCGAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.32
Consensus pattern (11 bp):
AAGTTTTAAAA
Found at i:46775623 original size:10 final size:10
Alignment explanation
Indices: 46775601--46775649 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
46775591 AAATTTGTCG
46775601 AAAA-TAATT
1 AAAATTAATT
*
46775610 AAAATTAATC
1 AAAATTAATT
*
46775620 AAAATTTGATAT
1 AAAA-TTAAT-T
46775632 AAAATTAATT
1 AAAATTAATT
46775642 AAAATTAA
1 AAAATTAA
46775650 ACATGTTCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
9 4 0.12
10 17 0.52
11 8 0.24
12 4 0.12
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:46782179 original size:39 final size:39
Alignment explanation
Indices: 46782070--46782942 Score: 1642
Period size: 39 Copynumber: 22.3 Consensus size: 39
46782060 GCTCCTCGTT
* * *
46782070 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATT-TAGTAACTCGCA
46782110 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGCA
46782150 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782189 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782228 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782267 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782306 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782345 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782384 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782423 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782462 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782501 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782540 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782579 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782618 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782657 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782696 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782735 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782774 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782813 C-AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAACCCGGATTTAGTAACTCGCA
46782852 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
* * *
46782891 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
46782930 CAAATGCCTTCGG
1 CAAATGCCTTCGG
46782943 ATCTTAGTCC
Statistics
Matches: 824, Mismatches: 6, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
38 12 0.01
39 750 0.91
40 60 0.07
41 2 0.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAACCCGGATTTAGTAACTCGCA
Found at i:46786540 original size:162 final size:162
Alignment explanation
Indices: 46786338--46786650 Score: 554
Period size: 162 Copynumber: 1.9 Consensus size: 162
46786328 TAAAGCATCT
* *
46786338 GCAACCACATTAGCCTTTCCCGGGTGATAGTCAATGACAAGCTCATAATCTTTCAACAACTCAGG
1 GCAACCACATTAGCCTTTCCCGGGTGATAATCAATGACAAGCTCATAATCTTTCAACAACTCAAG
*
46786403 CCAACGCCGTTGTCGCAGATTCAAGTCTCTTTGAGTCATCAAATATTTGAGACTTTTGTGATCCG
66 CCAACGCCGTTGTCGCAGATTCAAGTCTCGTTGAGTCATCAAATATTTGAGACTTTTGTGATCCG
46786468 AATATACATGGCACTTCTCACTTATGGCGTCC
131 AATATACATGGCACTTCTCACTTATGGCGTCC
* * *
46786500 GCAACCACGTTAGCCTTTCCCGGGTGGTAATCAATGACAAGCTCGTAATCTTTCAACAACTCAAG
1 GCAACCACATTAGCCTTTCCCGGGTGATAATCAATGACAAGCTCATAATCTTTCAACAACTCAAG
* *
46786565 CCAACGTCTTTGTCGCAGATTCAAGTCTCGTTGAGTCATCAAATATTTGAGACTTTTGTGATCCG
66 CCAACGCCGTTGTCGCAGATTCAAGTCTCGTTGAGTCATCAAATATTTGAGACTTTTGTGATCCG
46786630 AATATACATGGCACTTCTCAC
131 AATATACATGGCACTTCTCAC
46786651 CAAATAAGTA
Statistics
Matches: 143, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
162 143 1.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.30
Consensus pattern (162 bp):
GCAACCACATTAGCCTTTCCCGGGTGATAATCAATGACAAGCTCATAATCTTTCAACAACTCAAG
CCAACGCCGTTGTCGCAGATTCAAGTCTCGTTGAGTCATCAAATATTTGAGACTTTTGTGATCCG
AATATACATGGCACTTCTCACTTATGGCGTCC
Found at i:46791155 original size:40 final size:40
Alignment explanation
Indices: 46791086--46791310 Score: 301
Period size: 40 Copynumber: 5.6 Consensus size: 40
46791076 AAACCAAGTA
* * *
46791086 CCTTCGGGATTTAG-CCGGATATCGAAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
46791125 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
46791165 CCTTCGGGTCTTAGCTC-GATAATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAT-ATAGTAACTCGCACAAATG
* *
46791205 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TA--ACTCGCACAAATG
*
46791248 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
46791288 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
46791311 CATCCGAATA
Statistics
Matches: 162, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 15 0.09
40 107 0.66
41 3 0.02
42 1 0.01
43 36 0.22
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:46791274 original size:83 final size:80
Alignment explanation
Indices: 46791086--46791310 Score: 301
Period size: 83 Copynumber: 2.8 Consensus size: 80
46791076 AAACCAAGTA
* * * * *
46791086 CCTTCGGGATTTAG-CCGGATATCGAAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
46791150 TAACTCGCACACATG
66 AAACTCGCACAAATG
* * *
46791165 CCTTCGGGTCTTAGCTC-GATAATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATA
1 CCTTCGGGACTTAGCCCGGAT-ATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
46791229 GCAACTACTCGCACAAATG
65 G-AA--ACTCGCACAAATG
*
46791248 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
46791311 CATCCGAATA
Statistics
Matches: 126, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
79 15 0.12
80 40 0.32
81 1 0.01
83 67 0.53
84 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
AAACTCGCACAAATG
Found at i:46791776 original size:103 final size:103
Alignment explanation
Indices: 46791592--46791796 Score: 392
Period size: 103 Copynumber: 2.0 Consensus size: 103
46791582 TCATCACTTC
46791592 ATGCATTATTTAGTACTTTAAAATTTACCTATCACACTTTCAATTTTTATCACATGAGTCCTATC
1 ATGCATTATTTAGTACTTTAAAATTTACCTATCACACTTTCAATTTTTATCACATGAGTCCTATC
46791657 GTAAAAATTTCACATACAAATAACCAAATCAAAGCATT
66 GTAAAAATTTCACATACAAATAACCAAATCAAAGCATT
*
46791695 ATGCGTTATTTAGTACTTTAAAATTTACCTATCACACTTTCAATTTTTATCACATGAGTCCTATC
1 ATGCATTATTTAGTACTTTAAAATTTACCTATCACACTTTCAATTTTTATCACATGAGTCCTATC
*
46791760 TTAAAAATTTCACATACAAATAACCAAATCAAAGCAT
66 GTAAAAATTTCACATACAAATAACCAAATCAAAGCAT
46791797 GAAACTTTCA
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 100 1.00
ACGTcount: A:0.39, C:0.20, G:0.06, T:0.36
Consensus pattern (103 bp):
ATGCATTATTTAGTACTTTAAAATTTACCTATCACACTTTCAATTTTTATCACATGAGTCCTATC
GTAAAAATTTCACATACAAATAACCAAATCAAAGCATT
Found at i:46796619 original size:24 final size:26
Alignment explanation
Indices: 46796575--46796623 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
46796565 CGAGGTAAGT
46796575 TTGTATGTTAAATAAGCTTTAATATAA
1 TTGTATGTTAAAT-AGCTTTAATATAA
46796602 TTGTAT-TTAAAT-GCTTTAATAT
1 TTGTATGTTAAATAGCTTTAATAT
46796624 TGCATGAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
26 6 0.27
27 6 0.27
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (26 bp):
TTGTATGTTAAATAGCTTTAATATAA
Found at i:46797688 original size:15 final size:17
Alignment explanation
Indices: 46797658--46797689 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
46797648 TTGATACTTG
46797658 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
46797675 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
46797690 AATTATGCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:46811494 original size:38 final size:38
Alignment explanation
Indices: 46811449--46811621 Score: 199
Period size: 38 Copynumber: 4.5 Consensus size: 38
46811439 AGCTTAAAGA
46811449 CCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCATGCTGGAATTATATCCGGGTTAAAT
46811487 CCCGCAGGCTTCATGCTGGTAA-TATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTGG-AATTATATCCGGGTTAAAT
* *
46811525 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAAT
* * ** *
46811563 CCCGCAGGCCT-AGTGCTGGTATTATATATGAGTTTAAAGT
1 CCCGCAGGCTTCA-TGCTGGAATTATATCCG-GGTTAAA-T
* *
46811603 CCCGTAGGCTTCGTGCTGG
1 CCCGCAGGCTTCATGCTGG
46811622 TGTTATGTTT
Statistics
Matches: 118, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
37 2 0.02
38 92 0.78
39 8 0.07
40 16 0.14
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAAT
Found at i:46811580 original size:76 final size:78
Alignment explanation
Indices: 46811442--46811627 Score: 236
Period size: 76 Copynumber: 2.4 Consensus size: 78
46811432 GTATCTGAGC
* * * *
46811442 TTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCATGCTGG
1 TTAAAGTCCCGCAGGCT-TCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTCATGCTGG
*
46811506 TAATATATCCG-GG
65 TAATATATACGAGG
46811519 TTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCT-AGTGCTGG
1 TTAAAGTCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTCA-TGCTGG
* * *
46811582 TATTATATATGAGT
65 TAATATATACGAGG
* *
46811596 TTAAAGTCCCGTAGGCTTCGTGCTGGTGTTAT
1 TTAAAGTCCCGCAGGCTTCGTGCTGGTATTAT
46811628 GTTTGGGTTT
Statistics
Matches: 95, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
75 2 0.02
76 58 0.61
77 11 0.12
78 24 0.25
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (78 bp):
TTAAAGTCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTCATGCTGGT
AATATATACGAGG
Found at i:46813235 original size:43 final size:43
Alignment explanation
Indices: 46813187--46813353 Score: 244
Period size: 43 Copynumber: 3.9 Consensus size: 43
46813177 GCATGAAACT
*
46813187 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * * *
46813230 CGGTGATGAGTATTTGGGCCTTTGTGCCTAGCAGGCTTCATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* *
46813273 CGGTGATGTGTATTCGAGCCTTCGTGCCTAGCAGGCTCCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
** *
46813316 CAATGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTT
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTT
46813354 AATGCCAGTG
Statistics
Matches: 110, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 110 1.00
ACGTcount: A:0.13, C:0.23, G:0.32, T:0.32
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:46813616 original size:57 final size:58
Alignment explanation
Indices: 46813519--46813629 Score: 154
Period size: 57 Copynumber: 1.9 Consensus size: 58
46813509 CGAATGATTA
* *
46813519 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTCAACCGAGCACTATGTGTACGAAATCGGTAATT
* * *
46813577 GAGGCACTGTGTGTGTGAGA-T-CTTCAACCGAGCACTATGTGTACGAGATCGGT
1 GAGGCACTGTGTGTG-CAAATTCCTTCAACCGAGCACTATGTGTACGAAATCGGT
46813630 CAGTGGGCAC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
57 29 0.62
58 16 0.34
59 2 0.04
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCCTTCAACCGAGCACTATGTGTACGAAATCGGTAATT
Found at i:46818948 original size:93 final size:93
Alignment explanation
Indices: 46818835--46819006 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
46818825 CGCCCATAAG
* *
46818835 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
46818900 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
46818928 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
46818993 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
46819007 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:46819003 original size:46 final size:46
Alignment explanation
Indices: 46818828--46819003 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
46818818 TGTAACCCGC
* * *
46818828 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
46818874 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
46818924 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
46818967 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
46819004 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:46829367 original size:28 final size:28
Alignment explanation
Indices: 46829335--46829404 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
46829325 AATGAGATTG
46829335 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
46829363 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
46829391 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
46829405 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:46830839 original size:15 final size:15
Alignment explanation
Indices: 46830813--46830856 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
46830803 TGTTACAACT
46830813 ATTTTAAGGTTTATGA
1 ATTTT-AGGTTTATGA
*
46830829 ATTTTAGGTTTAGGA
1 ATTTTAGGTTTATGA
*
46830844 ATTAT-GGTTTATG
1 ATTTTAGGTTTATG
46830857 GTTTAAGGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 7 0.28
15 13 0.52
16 5 0.20
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (15 bp):
ATTTTAGGTTTATGA
Found at i:46830873 original size:14 final size:14
Alignment explanation
Indices: 46830856--46830936 Score: 85
Period size: 14 Copynumber: 5.9 Consensus size: 14
46830846 TATGGTTTAT
46830856 GGTTTAAGGGTTAG
1 GGTTTAAGGGTTAG
46830870 GGTTTAAGGGTTAG
1 GGTTTAAGGGTTAG
* *
46830884 AGTTTAAGGTTTAG
1 GGTTTAAGGGTTAG
*
46830898 GGATTAAGGGTT-G
1 GGTTTAAGGGTTAG
* **
46830911 GGGTTAACTGTTAGG
1 GGTTTAAGGGTTA-G
46830926 GGTTT-AGGGTT
1 GGTTTAAGGGTT
46830937 TATTTTTATG
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.19
14 39 0.72
15 5 0.09
ACGTcount: A:0.21, C:0.01, G:0.41, T:0.37
Consensus pattern (14 bp):
GGTTTAAGGGTTAG
Found at i:46831713 original size:17 final size:18
Alignment explanation
Indices: 46831691--46831724 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
46831681 AGATAATTTT
46831691 AATATA-TTAAAATTATC
1 AATATAGTTAAAATTATC
*
46831708 AATATAGTTTAAATTAT
1 AATATAGTTAAAATTAT
46831725 TTAAGGGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
AATATAGTTAAAATTATC
Found at i:46832617 original size:61 final size:62
Alignment explanation
Indices: 46832540--46832661 Score: 174
Period size: 62 Copynumber: 2.0 Consensus size: 62
46832530 CTTCCTTTTA
46832540 TTTTCAATCGTCTTAAAA-TTTTAGAAATTTTAATTTGGGTTTCTTATTTCTATTATATTAG
1 TTTTCAATCGTCTTAAAATTTTTAGAAATTTTAATTTGGGTTTCTTATTTCTATTATATTAG
* * * ** **
46832601 TTTTCAATTGTTTTAAAATTTTTTGATTTTTTTGTTTGGGTTTCTTATTTCTATTATATTA
1 TTTTCAATCGTCTTAAAATTTTTAGAAATTTTAATTTGGGTTTCTTATTTCTATTATATTA
46832662 ATTCAAATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
61 16 0.30
62 37 0.70
ACGTcount: A:0.24, C:0.07, G:0.10, T:0.60
Consensus pattern (62 bp):
TTTTCAATCGTCTTAAAATTTTTAGAAATTTTAATTTGGGTTTCTTATTTCTATTATATTAG
Found at i:46839073 original size:3 final size:3
Alignment explanation
Indices: 46839059--46839169 Score: 75
Period size: 3 Copynumber: 36.7 Consensus size: 3
46839049 GGAAAACAAT
* * * *
46839059 ATA ATG ATA ATA ATA ATA GTA ATA CGATA GTA ATA ATA ATA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA ATA ATA ATA ATA
* * * * *
46839106 A-A ATA GA-A ATA ATA ATA GTG GTGA A-A ATA ATA ATA ATA GTA ATG
1 ATA ATA -ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
*
46839150 ATA ATG ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
46839170 GTAAGTAAAT
Statistics
Matches: 84, Mismatches: 17, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
2 5 0.06
3 75 0.89
4 1 0.01
5 3 0.04
ACGTcount: A:0.58, C:0.02, G:0.11, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:46839092 original size:20 final size:20
Alignment explanation
Indices: 46839064--46839214 Score: 68
Period size: 20 Copynumber: 7.7 Consensus size: 20
46839054 ACAATATAAT
*
46839064 GATAATAATAATAGTAATAC
1 GATAATAATAATAATAATAC
*
46839084 GATAGTAATAATAATAATAAC
1 GATAATAATAATAATAAT-AC
* *
46839105 -AAAATAGA-AATAATAATAGT
1 GATAATA-ATAATAATAATA-C
*
46839125 GGTGAA-AATAATAATAATA-
1 GAT-AATAATAATAATAATAC
* *
46839144 G-TAATGATAATGATAATA-
1 GATAATAATAATAATAATAC
*
46839162 -ATAATAAT-GTAAGTAAATAC
1 GATAATAATAATAA-T-AATAC
* **
46839182 GAAAATAA-AATATATAATGT
1 GATAATAATAATA-ATAATAC
*
46839202 GATAATAACAATA
1 GATAATAATAATA
46839215 TAAAATTAAT
Statistics
Matches: 99, Mismatches: 17, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
17 4 0.04
18 19 0.19
19 6 0.06
20 40 0.40
21 27 0.27
22 3 0.03
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.28
Consensus pattern (20 bp):
GATAATAATAATAATAATAC
Found at i:46839092 original size:23 final size:23
Alignment explanation
Indices: 46839066--46839124 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
46839056 AATATAATGA
* **
46839066 TAATAATAATAGTAATACGATAG
1 TAATAATAATAGTAACAAAATAG
*
46839089 TAATAATAATAATAACAAAATAG
1 TAATAATAATAGTAACAAAATAG
*
46839112 AAATAATAATAGT
1 TAATAATAATAGT
46839125 GGTGAAAATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.29
Consensus pattern (23 bp):
TAATAATAATAGTAACAAAATAG
Found at i:46839531 original size:3 final size:3
Alignment explanation
Indices: 46839523--46839601 Score: 69
Period size: 3 Copynumber: 27.7 Consensus size: 3
46839513 AATGAGATAC
* *
46839523 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT -AT GAA- ATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
* * *
46839567 AAT GAT -AT AAT AAT -AT AAT AAT -GT AAC AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
46839602 GCATAAAAGG
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
2 8 0.13
3 52 0.85
4 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:46841321 original size:88 final size:88
Alignment explanation
Indices: 46841204--46842118 Score: 1233
Period size: 88 Copynumber: 10.5 Consensus size: 88
46841194 TCAGTCTACC
* *
46841204 CCAATGCCATTACAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGCTGAAACTACAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGCTGAAACTTCAAGGAGAT
** *
46841269 ACAAACTGTGGCTTCGAGTTGTT
66 ACAAACTGTGGCTTCGAGCCGCT
* * * * * *
46841292 CCAATGCCATTTTAGGGAGAAGAGATTTGTAGTCTCGATCTACTCCACTGGAACTTCAAGGCGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGCTGAAACTTCAAGGAGAT
* * *
46841357 ACGAACTGTGGCTTCGAGTCGCC
66 ACAAACTGTGGCTTCGAGCCGCT
* * *
46841380 CCAATGCCATTAT-AGGGAGAAGAGATTTGTAG-CTTCGATCTACTCTGCTGGAACTTCAAGAAG
1 CCAATGCCATT-TCAGGGAGAAGAGATTTGTAGCCTT-GATCTACTCCGCTGAAACTTCAAGGAG
* * * *
46841443 ATACGAATTGTAGCTTCGAGCTGCT
64 ATACAAACTGTGGCTTCGAGCCGCT
* * *
46841468 CCAATGCCATTTCAAGGAGAAGAGATTTGTATCCTCGATCTACTCCGCTGAAACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGCTGAAACTTCAAGGAGAT
*
46841533 A-AAAAT-T-G--T---G--GCT
66 ACAAACTGTGGCTTCGAGCCGCT
* * *
46841546 CCACTGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGTTGAAACTTCAAGAAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGCTGAAACTTCAAGGAGAT
*
46841611 ACGAACTGTGGCTTCGAGCCGCT
66 ACAAACTGTGGCTTCGAGCCGCT
* * * *
46841634 CCAATGCCTTTTCAGGGAGAAGAGATTTGTAGCCTCGAACTACTCTGCTGAAACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGCTGAAACTTCAAGGAGAT
*
46841699 ACGAACTGTGGCTTCGAGCCGCT
66 ACAAACTGTGGCTTCGAGCCGCT
* * * * *
46841722 CCAATGCCATTTTAGGGAGAAGAGATTTGTAGCTTTGAACTACTCTGCTGATACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGCTGAAACTTCAAGGAGAT
**
46841787 ATGAACTGTGGCTTCGAGCCGCT
66 ACAAACTGTGGCTTCGAGCCGCT
* *
46841810 CCAATGCCATTTCAAGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGAAACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGCTGAAACTTCAAGGAGAT
*
46841875 ACAAACTGTGGCTTCGAGCCACT
66 ACAAACTGTGGCTTCGAGCCGCT
*
46841898 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGAAACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGCTGAAACTTCAAGGAGAT
*
46841963 ACAAACTGTGGCTTCGAGCCACT
66 ACAAACTGTGGCTTCGAGCCGCT
* * *
46841986 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTTGATCTACTCTGCTGGAACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGCTGAAACTTCAAGGAGAT
* * **
46842051 ACAAATTGTGGCTTCAAGCCATT
66 ACAAACTGTGGCTTCGAGCCGCT
* *
46842074 CCAATGCCATTTCAGGAAGAAGAGATTTGTAGCTTTGATCTACTC
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTC
46842119 TACTAGAACT
Statistics
Matches: 743, Mismatches: 70, Indels: 28
0.88 0.08 0.03
Matches are distributed among these distances:
78 63 0.08
79 3 0.00
80 2 0.00
81 1 0.00
83 2 0.00
85 1 0.00
86 2 0.00
87 6 0.01
88 660 0.89
89 3 0.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (88 bp):
CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGCTGAAACTTCAAGGAGAT
ACAAACTGTGGCTTCGAGCCGCT
Found at i:46842208 original size:42 final size:43
Alignment explanation
Indices: 46842161--46842404 Score: 172
Period size: 44 Copynumber: 5.7 Consensus size: 43
46842151 TTTCAACCTG
* *
46842161 CTCCACTACTGCTTAGGAAGATAGGAT-GGTGGCTTAAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCGGTGGCTTAAATCTA
*** * ** * *
46842203 CTCCACTACTGCTTAGGGAG-TCAAGATTCACCGTCTTTGATTTG
1 CTCCACTACTGCTTAGGGAGAT-AAGA-TCGGTGGCTTAAATCTA
* * ** * **
46842247 CTCCACTACTGCTTTGGGAGATAAGATCTGTAATCTTTAGCCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCGGT-GGCTTAAATCTA
*
46842291 CTCCACTATTGCTTAGGGAGATAAGAT-GGTGGCTTAAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCGGTGGCTTAAATCTA
* * ** ** *
46842333 CTCCACAACTGCTTAGGGAGACAAGATTC-GTCATCTTCGATCTG
1 CTCCACTACTGCTTAGGGAGATAAGA-TCGGT-GGCTTAAATCTA
**
46842377 CTCCACTACTGGATAGGGAGATAAGATC
1 CTCCACTACTGCTTAGGGAGATAAGATC
46842405 TGTAAATTCA
Statistics
Matches: 154, Mismatches: 40, Indels: 15
0.74 0.19 0.07
Matches are distributed among these distances:
41 1 0.01
42 52 0.34
43 10 0.06
44 90 0.58
45 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (43 bp):
CTCCACTACTGCTTAGGGAGATAAGATCGGTGGCTTAAATCTA
Found at i:46842306 original size:130 final size:130
Alignment explanation
Indices: 46842161--46842409 Score: 381
Period size: 130 Copynumber: 1.9 Consensus size: 130
46842151 TTTCAACCTG
* * *
46842161 CTCCACTACTGCTTAGGAAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGTCA
1 CTCCACTACTGCTTAGGAAGATAAGATGGTGGCTTAAATCTACTCCACAACTGCTTAGGGAGACA
* * * * *
46842226 AGATTCACCGTCTTTGATTTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATCTTTAGCCTA
66 AGATTCACCATCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGATCTGTAATCTTTAGCCTA
* *
46842291 CTCCACTATTGCTTAGGGAGATAAGATGGTGGCTTAAATCTACTCCACAACTGCTTAGGGAGACA
1 CTCCACTACTGCTTAGGAAGATAAGATGGTGGCTTAAATCTACTCCACAACTGCTTAGGGAGACA
** *
46842356 AGATTCGTCATCTTCGATCTGCTCCACTACTGGATAGGGAGATAAGATCTGTAA
66 AGATTCACCATCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGATCTGTAA
46842410 ATTCACCGAT
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
130 106 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (130 bp):
CTCCACTACTGCTTAGGAAGATAAGATGGTGGCTTAAATCTACTCCACAACTGCTTAGGGAGACA
AGATTCACCATCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGATCTGTAATCTTTAGCCTA
Found at i:46849173 original size:12 final size:12
Alignment explanation
Indices: 46849152--46849227 Score: 64
Period size: 12 Copynumber: 5.9 Consensus size: 12
46849142 GCAAAGACGA
*
46849152 GATAAAAATAAT
1 GATAATAATAAT
46849164 GATAATAATAAT
1 GATAATAATAAT
46849176 GATAATAATAAGAGT
1 GATAATAAT-A-A-T
*
46849191 GATTATATATATAT
1 GATAATA-ATA-AT
46849205 GA-AAGTAATAAT
1 GATAA-TAATAAT
*
46849217 AATAATAATAA
1 GATAATAATAA
46849228 AATAAAATAA
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
12 29 0.55
13 7 0.13
14 6 0.11
15 9 0.17
16 2 0.04
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (12 bp):
GATAATAATAAT
Found at i:46849256 original size:3 final size:3
Alignment explanation
Indices: 46849153--46849237 Score: 50
Period size: 3 Copynumber: 28.3 Consensus size: 3
46849143 CAAAGACGAG
* * * * * * *
46849153 ATA AAA ATA ATG ATA ATA ATA ATG ATA ATA ATA AGA GTG ATT ATA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
*
46849202 TATGA A-A GTA ATA ATA ATA ATA ATA A-A ATA A-A ATA A
1 -AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
46849238 ATGTGTTAAA
Statistics
Matches: 62, Mismatches: 15, Indels: 10
0.71 0.17 0.11
Matches are distributed among these distances:
2 5 0.08
3 49 0.79
4 7 0.11
5 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:46849269 original size:23 final size:23
Alignment explanation
Indices: 46849226--46849283 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
46849216 TAATAATAAT
46849226 AAAATAA-AATAAATGTGTTAAA
1 AAAATAATAATAAATGTGTTAAA
* *
46849248 AAAATAATATTAAATCGT-TTAAT
1 AAAATAATAATAAAT-GTGTTAAA
*
46849271 ATAATAATAATAA
1 AAAATAATAATAA
46849284 CTTATGTGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 7 0.23
23 21 0.70
24 2 0.07
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (23 bp):
AAAATAATAATAAATGTGTTAAA
Found at i:46849323 original size:3 final size:3
Alignment explanation
Indices: 46849315--46849425 Score: 75
Period size: 3 Copynumber: 36.7 Consensus size: 3
46849305 GGAAAACAAT
* * * *
46849315 ATA ATA ATA ATA ATA ATA GTA GTA ATA CGATA GTA ATA ATA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA ATA ATA ATA
* * * * *
46849362 A-A AT- ATAA ATA ATA ATA GTG GTGA A-A ATA ATA ATA ATA GTA ATG
1 ATA ATA AT-A ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
*
46849406 ATA ATG ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
46849426 GTAAGTAAAT
Statistics
Matches: 86, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
2 6 0.07
3 75 0.87
4 2 0.02
5 3 0.03
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:46849798 original size:3 final size:3
Alignment explanation
Indices: 46849790--46849853 Score: 57
Period size: 3 Copynumber: 22.7 Consensus size: 3
46849780 AAGGAGATAC
*
46849790 AAT AAT AAT AAT AAT AAT AAT -AT GAA- ATT AAT AAT -AT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT
* *
46849833 -AT AAT AAT -GT AAC AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AA
46849854 GCATAAAAGG
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
2 8 0.16
3 40 0.82
4 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:46849831 original size:8 final size:8
Alignment explanation
Indices: 46849794--46849840 Score: 62
Period size: 8 Copynumber: 6.0 Consensus size: 8
46849784 AGATACAATA
46849794 ATAATAAT
1 ATAATAAT
46849802 AATAATAAT
1 -ATAATAAT
*
46849811 ATGA-AAT
1 ATAATAAT
46849818 -TAATAAT
1 ATAATAAT
46849825 ATAATAAT
1 ATAATAAT
46849833 ATAATAAT
1 ATAATAAT
46849841 GTAACAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 2 0.06
7 6 0.18
8 18 0.53
9 8 0.24
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (8 bp):
ATAATAAT
Found at i:46849849 original size:16 final size:16
Alignment explanation
Indices: 46849803--46849849 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
46849793 AATAATAATA
*
46849803 ATAATAATATGA-AAT
1 ATAATAATATAACAAT
*
46849818 -TAATAATATAATAAT
1 ATAATAATATAACAAT
*
46849833 ATAATAATGTAACAAT
1 ATAATAATATAACAAT
46849849 A
1 A
46849850 ATAAGCATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 10 0.37
15 3 0.11
16 14 0.52
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (16 bp):
ATAATAATATAACAAT
Found at i:46855956 original size:49 final size:48
Alignment explanation
Indices: 46855856--46855978 Score: 176
Period size: 49 Copynumber: 2.5 Consensus size: 48
46855846 TTAGGATTTT
**
46855856 ATGTGATGAATGTG-AATGTGCATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAATGTATATATATGTGATAAGGCCTAATAGCCA
* *
46855903 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAA-TGTATATATATGTGATAAGGCCTAATAGCCA
*
46855952 ATGTGATGAATGTGAAACCGTATATAT
1 ATGTGATGAATGTGAAA-TGTATATAT
46855979 GTGACAGGGC
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
47 14 0.21
48 2 0.03
49 52 0.76
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (48 bp):
ATGTGATGAATGTGAAATGTATATATATGTGATAAGGCCTAATAGCCA
Found at i:46855997 original size:47 final size:47
Alignment explanation
Indices: 46855856--46856000 Score: 182
Period size: 47 Copynumber: 3.0 Consensus size: 47
46855846 TTAGGATTTT
* * * *
46855856 ATGTGATGAATGTGAATGTGCATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46855903 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
** * * * *
46855952 ATGTGATGAATGTGAAACCGTATATATGTGACAGGGCCGAGTGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
46855999 AT
1 AT
46856001 ATGTATATGT
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
47 44 0.51
49 42 0.49
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:46856108 original size:98 final size:98
Alignment explanation
Indices: 46855998--46856238 Score: 448
Period size: 98 Copynumber: 2.5 Consensus size: 98
46855988 CCGAGTGGCC
*
46855998 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAT-CATATGTGAT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT-ATGCATATGTGAT
46856062 AAAGCCGAATGGTCAATGTGAAATATATATATGA
65 AAAGCCGAATGGTCAATGTGAAATATATATATGA
*
46856096 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGCATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGCATATGTGATA
46856161 AAGCCGAATGGTCAATGTGAAATATATATATGA
66 AAGCCGAATGGTCAATGTGAAATATATATATGA
46856194 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
46856239 GGCGATGTGC
Statistics
Matches: 140, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
97 2 0.01
98 138 0.99
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.31
Consensus pattern (98 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGCATATGTGATA
AAGCCGAATGGTCAATGTGAAATATATATATGA
Found at i:46856116 original size:50 final size:50
Alignment explanation
Indices: 46855998--46856235 Score: 337
Period size: 50 Copynumber: 4.8 Consensus size: 50
46855988 CCGAGTGGCC
*
46855998 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGA
* *
46856046 GATAAT-CATATGTGATAAAGCCGAATGG-TCAATGTGAAATATATATATGA
1 GAT-ATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGA
* *
46856096 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGA
*
46856144 GATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATGA
*
46856194 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
46856236 GTAGGCGATG
Statistics
Matches: 168, Mismatches: 12, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
47 2 0.01
48 70 0.42
49 10 0.06
50 84 0.50
51 2 0.01
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.31
Consensus pattern (50 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGA
Found at i:46856493 original size:37 final size:37
Alignment explanation
Indices: 46856385--46856493 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
46856375 GGAAATATAT
*
46856385 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
46856422 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
46856459 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
46856494 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:46858444 original size:40 final size:40
Alignment explanation
Indices: 46857761--46858432 Score: 1200
Period size: 40 Copynumber: 16.8 Consensus size: 40
46857751 GAGAATTGAG
*
46857761 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
46857801 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
46857841 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
46857881 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
46857921 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
46857961 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
46858001 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
46858041 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
46858081 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
46858121 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
46858161 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
46858201 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
46858241 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
46858281 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
46858321 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
46858361 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
46858401 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
46858433 ATCATGCTGG
Statistics
Matches: 613, Mismatches: 19, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 613 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:46871310 original size:85 final size:85
Alignment explanation
Indices: 46871154--46871465 Score: 319
Period size: 85 Copynumber: 3.7 Consensus size: 85
46871144 AAATATTTTT
* * * * * * *
46871154 TAAAGGTCATGTTTTTTATCGGTGTTTGTGAGAAAAGCGCCGCTAAAGGTCAAT-TT-TATAATG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGTC-ATGTTCTTTAGT-
* * * *
46871217 GGGTTTTTGGGAAAAGTGCCGT
64 GCGATTTTGGGAAAAGCGCCGC
* *
46871239 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAACACTGCTAAAGGTCATGTTCTTTAGTGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATGTTCTTTAGTGC
* *
46871304 TG-TTTTGGGAAAAGCGTCAC
66 -GATTTTGGGAAAAGCGCCGC
* *
46871324 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATGTTCTTTAG-TG
* * *
46871389 CGATTTTAGGAGAAGCGCTGC
65 CGATTTTGGGAAAAGCGCCGC
* * * * **
46871410 TAAAGGT-TTGTTCTTTAGCGGCATTTGTGGGAAAGA-GCTGCTAAAAATCATGTTCT
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATGTTCT
46871466 ATAGCGGCGT
Statistics
Matches: 192, Mismatches: 30, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
84 19 0.10
85 146 0.76
86 27 0.14
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (85 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAACGCCGCTAAAGGTCATGTTCTTTAGTGC
GATTTTGGGAAAAGCGCCGC
Found at i:46871327 original size:42 final size:43
Alignment explanation
Indices: 46871154--46871477 Score: 320
Period size: 43 Copynumber: 7.6 Consensus size: 43
46871144 AAATATTTTT
* * * *
46871154 TAAAGGTCATGTTTTTTATCGGTGTTTGTGAGAAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* ** * * * *
46871197 TAAAGGTCAAT-TT-TATAATGGGGTTTTTGGGAAAAGTGCCGT
1 TAAAGGTC-ATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * *
46871239 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAACACTGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * *
46871282 TAAAGGTCATGTTCTTTAG-TGCTGTTT-TGGGAAAAGCGTCAC
1 TAAAGGTCATGTTCTTTAGCGGC-GTTTGTGGGAAAAGCGCCGC
46871324 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * * *
46871367 TAAAGGTCATGTTCTTTAGCAGCGATTT-TAGGAGAAGCGCTGC
1 TAAAGGTCATGTTCTTTAGCGGCG-TTTGTGGGAAAAGCGCCGC
* * * *
46871410 TAAAGGT-TTGTTCTTTAGCGGCATTTGTGGG-AAAGAGCTGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
** *
46871451 TAAAAATCATGTTCTATAGCGGCGTTT
1 TAAAGGTCATGTTCTTTAGCGGCGTTT
46871478 TTTTCATAAA
Statistics
Matches: 230, Mismatches: 42, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
41 18 0.08
42 98 0.43
43 109 0.47
44 5 0.02
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (43 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
Found at i:46871382 original size:128 final size:129
Alignment explanation
Indices: 46871154--46871427 Score: 317
Period size: 128 Copynumber: 2.1 Consensus size: 129
46871144 AAATATTTTT
* * * *
46871154 TAAAGGTCATGTTTTTTA-TCGGTGTTTGTGAGAAAAGCGCCGCTAAAGGTCAATTTTATAATGG
1 TAAAGGTCATGTTCTTTAGTCGCTGTTTGTGAGAAAAGCGCCACTAAAGGTCAATTTTATAACGG
* * * * * *
46871218 GGTTTTTGGGAAAAGTGCCGTTAAAGGTCATGTTCTTTAGCGGCG-TTTGTGGGAAAAACACTGC
66 CGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCGATTT-TAGGAAAAACACTGC
* * * *
46871282 TAAAGGTCATGTTCTTTAGT-GCTGTTT-TGGGAAAAGCGTCACTAAAGGTC-ATGTTCTTTAGC
1 TAAAGGTCATGTTCTTTAGTCGCTGTTTGTGAGAAAAGCGCCACTAAAGGTCAAT-TT-TATAAC
* * *
46871344 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCGATTTTAGGAGAAGCGCTG
64 GGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCGATTTTAGGAAAAACACTG
46871409 C
129 C
*
46871410 TAAAGGT-TTGTTCTTTAG
1 TAAAGGTCATGTTCTTTAG
46871428 CGGCATTTGT
Statistics
Matches: 124, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
126 2 0.02
127 32 0.26
128 86 0.69
129 4 0.03
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (129 bp):
TAAAGGTCATGTTCTTTAGTCGCTGTTTGTGAGAAAAGCGCCACTAAAGGTCAATTTTATAACGG
CGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCAGCGATTTTAGGAAAAACACTGC
Found at i:46874527 original size:95 final size:94
Alignment explanation
Indices: 46874408--46874581 Score: 217
Period size: 95 Copynumber: 1.8 Consensus size: 94
46874398 AAGTTGAGAC
*
46874408 CATGTCCCAGAAAGGTCTTACACTGACTT-TCATATATCGTGGCCGATGCCATGTTCC-AGACAG
1 CATGTCCCAGAAAGGTCTTACACTGACTTGT-ATATATCGAGGCCGATG-CATG-TCCTAGACAG
*
46874471 GTCTTAAACTGGCTCTCGCCTCAATGTTGATG
63 GTCTTAAACTAGCTCTCGCCTCAATGTTGATG
* * * * * * *
46874503 CATGTCTCAGATATGTCTTACACTGGCTTGTATATCTCGAGGTCGATGCATGTCCTAGACATGTC
1 CATGTCCCAGAAAGGTCTTACACTGACTTGTATATATCGAGGCCGATGCATGTCCTAGACAGGTC
*
46874568 TTACACTAGCTCTC
66 TTAAACTAGCTCTC
46874582 ATAATGTGGC
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
93 3 0.04
94 24 0.36
95 39 0.58
96 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (94 bp):
CATGTCCCAGAAAGGTCTTACACTGACTTGTATATATCGAGGCCGATGCATGTCCTAGACAGGTC
TTAAACTAGCTCTCGCCTCAATGTTGATG
Found at i:46875233 original size:20 final size:18
Alignment explanation
Indices: 46875196--46875246 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
46875186 CTATAGCAAC
46875196 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
46875213 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
46875233 TTACAACTTTACAA
1 TCACAA-TTTACAA
46875247 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:46878526 original size:40 final size:40
Alignment explanation
Indices: 46878467--46878724 Score: 381
Period size: 40 Copynumber: 6.5 Consensus size: 40
46878457 CTCAAAATAG
*
46878467 CGCACACTAAGTGCCATACATAGCCAAAGCTATCACGAAT
1 CGCACACTAAGTGCCATACATAGCCAAAGCTATCTCGAAT
* ** *
46878507 CGCACACTAAGTGCTATACATAGCTGAAGCTATCTTGAAT
1 CGCACACTAAGTGCCATACATAGCCAAAGCTATCTCGAAT
* * * *
46878547 CGCACACTAAGTTCCACATATAGCCGAAGCTATCTCGAAT
1 CGCACACTAAGTGCCATACATAGCCAAAGCTATCTCGAAT
46878587 CGCACACTAAGTGCCATACATAGCCAAAGCTATCTCGAAT
1 CGCACACTAAGTGCCATACATAGCCAAAGCTATCTCGAAT
* * *
46878627 CGCACACTAAGTGTCATACATAGCCGAAGCTATGTCGAAT
1 CGCACACTAAGTGCCATACATAGCCAAAGCTATCTCGAAT
* *
46878667 CGTACACTAAGTGCCATACATAGCCAAAGCTATCTCAAAT
1 CGCACACTAAGTGCCATACATAGCCAAAGCTATCTCGAAT
*
46878707 CGCACACTAAGTTCCATA
1 CGCACACTAAGTGCCATA
46878725 TATAAACAAT
Statistics
Matches: 193, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 193 1.00
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (40 bp):
CGCACACTAAGTGCCATACATAGCCAAAGCTATCTCGAAT
Found at i:46880242 original size:18 final size:19
Alignment explanation
Indices: 46880204--46880244 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
46880194 TCAAACTTTT
* *
46880204 AAAATAATTTTTAAAATTC
1 AAAATAATTTATAAAAATC
46880223 AAAATAA-TTATAAAAATC
1 AAAATAATTTATAAAAATC
46880241 AAAA
1 AAAA
46880245 CTTATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAATAATTTATAAAAATC
Found at i:46885495 original size:12 final size:12
Alignment explanation
Indices: 46885478--46885503 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
46885468 CATTCCGAAG
46885478 TATATATATACA
1 TATATATATACA
46885490 TATATATATACA
1 TATATATATACA
46885502 TA
1 TA
46885504 AGTATGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:46886019 original size:27 final size:27
Alignment explanation
Indices: 46885985--46886162 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
46885975 TTTATTGTAC
46885985 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
46886012 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
46886038 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
46886066 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
46886094 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
46886121 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
46886148 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46886163 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:46886099 original size:82 final size:81
Alignment explanation
Indices: 46885986--46886141 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46885976 TTATTGTACA
* *
46885986 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
46886050 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
46886067 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
46886132 TGCGAGTTGA
65 TGCGAATTGA
46886142 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:46886153 original size:82 final size:81
Alignment explanation
Indices: 46885982--46886162 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
46885972 GTTTTTATTG
* *
46885982 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
46886047 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
46886063 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
46886127 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
46886145 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
46886163 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:46894206 original size:27 final size:27
Alignment explanation
Indices: 46894175--46894352 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
46894165 TAAATTGTAC
46894175 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
46894202 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
46894228 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
46894256 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
46894284 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
46894311 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
46894338 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46894353 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:46894289 original size:82 final size:81
Alignment explanation
Indices: 46894176--46894331 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46894166 AAATTGTACA
* *
46894176 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
46894240 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
46894257 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
46894322 TGCGAGTTGA
65 TGCGAATTGA
46894332 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:46894343 original size:82 final size:81
Alignment explanation
Indices: 46894172--46894352 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
46894162 GATTAAATTG
* *
46894172 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
46894237 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
46894253 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
46894317 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
46894335 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
46894353 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:46912480 original size:40 final size:40
Alignment explanation
Indices: 46912425--46912532 Score: 162
Period size: 40 Copynumber: 2.7 Consensus size: 40
46912415 ATTAAGGTTT
46912425 GCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGG
* ** *
46912465 GCTAAGTCCCAAAGGCATTTGTACGAGCTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGG
* *
46912505 GCCAAGTCCCGAAGGCATTTGAGTGAGT
1 GCTAAGTCCCGAAGGCATTTGTGTGAGT
46912533 ACTCAAAACT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATATCCGG
Found at i:46923517 original size:39 final size:40
Alignment explanation
Indices: 46923416--46923517 Score: 127
Period size: 40 Copynumber: 2.6 Consensus size: 40
46923406 TATTCAGATG
* * *
46923416 ATAACGGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
46923456 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTA-CT
* * *
46923496 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
46923518 TACTTGGTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 16 0.29
40 39 0.71
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTTACT
Found at i:46930804 original size:46 final size:45
Alignment explanation
Indices: 46930711--46930796 Score: 120
Period size: 46 Copynumber: 1.9 Consensus size: 45
46930701 TACATCTCAC
* * *
46930711 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
46930757 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
46930797 CCTAGTGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 9 0.25
46 27 0.75
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Done.