Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 146 of 284
Found at i:48841892 original size:98 final size:98
Alignment explanation
Indices: 48841760--48841951 Score: 375
Period size: 98 Copynumber: 2.0 Consensus size: 98
48841750 ATCTTTCATA
*
48841760 TCCTTCCATAATCCATCAAAATACCAATAACTCATGCATGGGTAATTTTTTGAACATGAACCTTA
1 TCCTTCCATAATCCATCAAAATACCAATAACTCATGCATGGGTAATTTTTTGAACATGAACCCTA
48841825 GCATGAAATATGGGTAGAAATGGAGAGAGAAAG
66 GCATGAAATATGGGTAGAAATGGAGAGAGAAAG
48841858 TCCTTCCATAATCCATCAAAATACCAATAACTCATGCATGGGTAATTTTTTGAACATGAACCCTA
1 TCCTTCCATAATCCATCAAAATACCAATAACTCATGCATGGGTAATTTTTTGAACATGAACCCTA
48841923 GCATGAAATATGGGTAGAAATGGAGAGAG
66 GCATGAAATATGGGTAGAAATGGAGAGAG
48841952 CAAAATACTG
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (98 bp):
TCCTTCCATAATCCATCAAAATACCAATAACTCATGCATGGGTAATTTTTTGAACATGAACCCTA
GCATGAAATATGGGTAGAAATGGAGAGAGAAAG
Found at i:48862933 original size:40 final size:40
Alignment explanation
Indices: 48862832--48863056 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
48862822 TATTCGAATG
* * *
48862832 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * * *
48862873 ACAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
48862913 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
48862953 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
48862993 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
48863033 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
48863057 CTTGCGCAAG
Statistics
Matches: 156, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 128 0.82
41 27 0.17
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:48863006 original size:80 final size:80
Alignment explanation
Indices: 48862832--48863092 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
48862822 TATTCGAATG
* * * * *
48862832 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTACAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTACATCCGGGCTAAGACCCGAAGGC
*
48862897 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * * *
48862913 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCA
* *
48862978 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * *
48862993 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACGACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCA
* * * *
48863058 TT-GCGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
48863072 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
48863093 ATTACTTGAG
Statistics
Matches: 152, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 13 0.09
80 94 0.62
81 31 0.20
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:48866653 original size:30 final size:30
Alignment explanation
Indices: 48866619--48866679 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
48866609 TCCTTAACTC
48866619 AAAC-TTTGACAAAATTACAATTTTGCCCCT
1 AAACTTTTG-CAAAATTACAATTTTGCCCCT
* * *
48866649 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
48866679 A
1 A
48866680 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:48872015 original size:27 final size:27
Alignment explanation
Indices: 48871985--48872184 Score: 229
Period size: 27 Copynumber: 7.4 Consensus size: 27
48871975 AGACCCCGAT
* *
48871985 TTGTAAAATTTCTAAAATACCCCCAAA
1 TTGTAAAATTACCAAAATACCCCCAAA
* *
48872012 TTGTAAAATTACCGAAATACCCCCAGA
1 TTGTAAAATTACCAAAATACCCCCAAA
* * **
48872039 TTGTAAAATTATCGAAATACCCCCAGT
1 TTGTAAAATTACCAAAATACCCCCAAA
* * *
48872066 TTGTAAATTTACCGAAATACCCTCAAA
1 TTGTAAAATTACCAAAATACCCCCAAA
**
48872093 TTGTAAAATTACCAAAATACCCCCAGT
1 TTGTAAAATTACCAAAATACCCCCAAA
* *
48872120 TTGTAAAATTACCTAAATACCCCCAAT
1 TTGTAAAATTACCAAAATACCCCCAAA
* ***
48872147 TTGTAAAATTACTAAAATACCCCCGTG
1 TTGTAAAATTACCAAAATACCCCCAAA
48872174 TTGTAAAATTA
1 TTGTAAAATTA
48872185 TTGAAATGCC
Statistics
Matches: 150, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 150 1.00
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCCAAA
Found at i:48872058 original size:54 final size:56
Alignment explanation
Indices: 48871978--48872276 Score: 284
Period size: 54 Copynumber: 5.6 Consensus size: 56
48871968 GTCGTTAAGA
*
48871978 CCCC-GATTTGTAAAATT-TCTAAAATACCCCCAAATTGTAAAATTACCGAAATAC
1 CCCCAGATTTGTAAAATTATCTAAAATACCCCCAATTTGTAAAATTACCGAAATAC
* * *
48872032 CCCCAGA-TTGTAAAATTATC-GAAATACCCCCAGTTTGTAAATTTACCGAAATAC
1 CCCCAGATTTGTAAAATTATCTAAAATACCCCCAATTTGTAAAATTACCGAAATAC
* * * * *
48872086 CCTCA-AATTGTAAAATTA-CCAAAATACCCCCAGTTTGTAAAATTACCTAAATAC
1 CCCCAGATTTGTAAAATTATCTAAAATACCCCCAATTTGTAAAATTACCGAAATAC
* **
48872140 CCCCA-ATTTGTAAAATTA-CTAAAATACCCCC-GTGTTGTAAAATTATTGAAAT--
1 CCCCAGATTTGTAAAATTATCTAAAATACCCCCAAT-TTGTAAAATTACCGAAATAC
* * * * *** *
48872192 GCCCTGACTTGTAAAATTAT-TGAAATACCCTTGATTTGTAAAATTATCGAAATAC
1 CCCCAGATTTGTAAAATTATCTAAAATACCCCCAATTTGTAAAATTACCGAAATAC
* * *
48872247 CCTC-GATTTGTGAAATT-TCTGAAATACCCC
1 CCCCAGATTTGTAAAATTATCTAAAATACCCC
48872277 TATGAGGTAG
Statistics
Matches: 207, Mismatches: 27, Indels: 22
0.81 0.11 0.09
Matches are distributed among these distances:
52 3 0.01
53 43 0.21
54 155 0.75
55 6 0.03
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (56 bp):
CCCCAGATTTGTAAAATTATCTAAAATACCCCCAATTTGTAAAATTACCGAAATAC
Found at i:48872111 original size:81 final size:81
Alignment explanation
Indices: 48871978--48872184 Score: 279
Period size: 81 Copynumber: 2.6 Consensus size: 81
48871968 GTCGTTAAGA
* * * *
48871978 CCCCGATTTGTAAAATTTCTAAAATACCCCCAAATTGTAAAATTACCGAAATACCCCCAGATTGT
1 CCCCAATTTGTAAAATTACCAAAATACCCCCAAATTGTAAAATTACCAAAATACCCCCAGATTGT
*
48872043 AAAATTATCGAAATAC
66 AAAATTACCGAAATAC
* * * * *
48872059 CCCCAGTTTGTAAATTTACCGAAATACCCTCAAATTGTAAAATTACCAAAATACCCCCAGTTTGT
1 CCCCAATTTGTAAAATTACCAAAATACCCCCAAATTGTAAAATTACCAAAATACCCCCAGATTGT
*
48872124 AAAATTACCTAAATAC
66 AAAATTACCGAAATAC
* ***
48872140 CCCCAATTTGTAAAATTACTAAAATACCCCCGTGTTGTAAAATTA
1 CCCCAATTTGTAAAATTACCAAAATACCCCCAAATTGTAAAATTA
48872185 TTGAAATGCC
Statistics
Matches: 107, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 107 1.00
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.29
Consensus pattern (81 bp):
CCCCAATTTGTAAAATTACCAAAATACCCCCAAATTGTAAAATTACCAAAATACCCCCAGATTGT
AAAATTACCGAAATAC
Found at i:48872191 original size:27 final size:26
Alignment explanation
Indices: 48871978--48872276 Score: 192
Period size: 27 Copynumber: 11.1 Consensus size: 26
48871968 GTCGTTAAGA
*
48871978 CCCCGATTTGTAAAATT-TCTAAAATAC
1 CCCCG-TTTGTAAAATTAT-TGAAATAC
** **
48872005 CCCCAAATTGTAAAATTACCGAAATAC
1 CCCC-GTTTGTAAAATTATTGAAATAC
* *
48872032 CCCCAGATTGTAAAATTATCGAAATAC
1 CCCC-GTTTGTAAAATTATTGAAATAC
* **
48872059 CCCCAGTTTGTAAATTTACCGAAATAC
1 CCCC-GTTTGTAAAATTATTGAAATAC
*** ***
48872086 CCTCAAATTGTAAAATTACCAAAATAC
1 CC-CCGTTTGTAAAATTATTGAAATAC
*
48872113 CCCCAGTTTGTAAAATTACCT-AAATAC
1 CCCC-GTTTGTAAAATTA-TTGAAATAC
* * *
48872140 CCCCAATTTGTAAAATTACTAAAATAC
1 CCCC-GTTTGTAAAATTATTGAAATAC
*
48872167 CCCCGTGTTGTAAAATTATTGAAAT-G
1 CCCCGT-TTGTAAAATTATTGAAATAC
* *
48872193 CCCTGACTTGTAAAATTATTGAAATAC
1 CCCCG-TTTGTAAAATTATTGAAATAC
** *
48872220 CCTTGATTTGTAAAATTATCGAAATAC
1 CCCCG-TTTGTAAAATTATTGAAATAC
* *
48872247 CCTCGATTTGTGAAATT-TCTGAAATAC
1 CCCCG-TTTGTAAAATTAT-TGAAATAC
48872274 CCC
1 CCC
48872277 TATGAGGTAG
Statistics
Matches: 228, Mismatches: 34, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
26 27 0.12
27 199 0.87
28 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (26 bp):
CCCCGTTTGTAAAATTATTGAAATAC
Found at i:48872295 original size:27 final size:27
Alignment explanation
Indices: 48872265--48872420 Score: 176
Period size: 27 Copynumber: 5.8 Consensus size: 27
48872255 TGTGAAATTT
*
48872265 CTGAAATACCCCTAT-GAGGTAGGATTA
1 CTGAAATACCCCTGTAG-GGTAGGATTA
48872292 CTGAAATACCCCTGTAGGGTAGGATTA
1 CTGAAATACCCCTGTAGGGTAGGATTA
*
48872319 -TCGAAATACCTCTGTAGGGTAGGATTA
1 CT-GAAATACCCCTGTAGGGTAGGATTA
* *
48872346 C-CAGAATACCCTTGTAGGGTAGGATTA
1 CTGA-AATACCCCTGTAGGGTAGGATTA
*
48872373 C-CAGAATACCCCTGTAGGGTAGGATTA
1 CTGA-AATACCCCTGTAGGGTAGGATTA
* **
48872400 CCGAAATACCTTTGTAGGGTA
1 CTGAAATACCCCTGTAGGGTA
48872421 AAATGCCCGT
Statistics
Matches: 115, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.02
27 111 0.97
28 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (27 bp):
CTGAAATACCCCTGTAGGGTAGGATTA
Found at i:48872473 original size:26 final size:26
Alignment explanation
Indices: 48872411--48872479 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
48872401 CGAAATACCT
* *
48872411 TTGTAGGGTAAAATGCCCGTTTTGCCC
1 TTGTA-GGTAAAATGACTGTTTTGCCC
**
48872438 -TAAAGAGTAAAATGACTGTTTTGCCC
1 TTGTAG-GTAAAATGACTGTTTTGCCC
48872464 TTGTAGGT-AAATGACT
1 TTGTAGGTAAAATGACT
48872480 AACTTGGGCT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
25 9 0.26
26 22 0.65
27 3 0.09
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (26 bp):
TTGTAGGTAAAATGACTGTTTTGCCC
Found at i:48880657 original size:13 final size:12
Alignment explanation
Indices: 48880633--48880670 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 12
48880623 AAAGAAACAT
48880633 ATGAAA-AATTA
1 ATGAAAGAATTA
48880644 ATGAAGAGAATTA
1 ATGAA-AGAATTA
*
48880657 ATGAATGAATTA
1 ATGAAAGAATTA
48880669 AT
1 AT
48880671 AAAATCAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 5 0.21
12 9 0.38
13 10 0.42
ACGTcount: A:0.55, C:0.00, G:0.16, T:0.29
Consensus pattern (12 bp):
ATGAAAGAATTA
Found at i:48885099 original size:42 final size:42
Alignment explanation
Indices: 48884986--48885103 Score: 146
Period size: 43 Copynumber: 2.8 Consensus size: 42
48884976 TCATAAGCTC
* * *
48884986 ATATAATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAA
1 ATATAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
* * * *
48885028 ATATCAATGCCACTGACCCAGACAGGGTCTTACACGAAATCAT
1 ATAT-AATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
* *
48885071 ATATGATGCCAATGTCCCAGGCATGGTCTTACA
1 ATATAATGCCAATGTCCCAGACATGGTCTTACA
48885104 TGTAAATAAA
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
42 28 0.44
43 35 0.56
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
ATATAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
Found at i:48897978 original size:15 final size:15
Alignment explanation
Indices: 48897958--48898026 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
48897948 ATATCTTGGG
48897958 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
48897973 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
48897988 ATTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
48898003 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
48898018 TTTCTTTAT
1 TTTCTTTAT
48898027 TCGGTTTCCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.14, C:0.17, G:0.12, T:0.57
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:48898027 original size:30 final size:30
Alignment explanation
Indices: 48897949--48898028 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
48897939 CATAGTATCA
* * *
48897949 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
48897979 TAT-TCTGGAATTCTTTATTCTGGATTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
48898009 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
48898029 GGTTTCCTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
29 1 0.02
30 40 0.95
31 1 0.02
ACGTcount: A:0.14, C:0.17, G:0.14, T:0.55
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:48903748 original size:52 final size:53
Alignment explanation
Indices: 48903686--48903791 Score: 187
Period size: 52 Copynumber: 2.0 Consensus size: 53
48903676 TATATGTGTG
* *
48903686 ATCCTTTGTATAGTATCTGTATGAGTTTAAGTGTGTGCTGTGTTGTATGCATA
1 ATCCTTTGTATAGTATCTGCATGAGTTTAAGTGTGTGCTGTATTGTATGCATA
48903739 ATCC-TTGTATAGTATCTGCATGAGTTTAAGTGTGTGCTGTATTGTATGCATA
1 ATCCTTTGTATAGTATCTGCATGAGTTTAAGTGTGTGCTGTATTGTATGCATA
48903791 A
1 A
48903792 GTAAATGTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
52 47 0.92
53 4 0.08
ACGTcount: A:0.23, C:0.10, G:0.24, T:0.43
Consensus pattern (53 bp):
ATCCTTTGTATAGTATCTGCATGAGTTTAAGTGTGTGCTGTATTGTATGCATA
Found at i:48906490 original size:108 final size:110
Alignment explanation
Indices: 48906291--48906491 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
48906281 TTTAAGGATA
*
48906291 CCATGTAAGACGATGCCAAGGCATGACAGTTGGTAAGGTTTCTAACGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGACAGTTGGTAAGGTTTCTAACGCAAGGATACCATGTAAGA
*
48906356 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGTAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGTAAAGGTC
* * *
48906401 CCATGTAAGACCATGCCAAGGCATGGCA-TTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGACAGTTGGTAAGGTTTC-TAACGCAAGGATACCATGTAAG
*
48906463 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
48906492 TAAATAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 49 0.58
109 6 0.07
110 26 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGACAGTTGGTAAGGTTTCTAACGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGTAAAGGTC
Found at i:48908971 original size:20 final size:20
Alignment explanation
Indices: 48908948--48908988 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
48908938 GCTTGTCCAG
*
48908948 AATATTGGCAGTTTAGCTGC
1 AATATTGACAGTTTAGCTGC
* *
48908968 AATATTGATAGTTTATCTGC
1 AATATTGACAGTTTAGCTGC
48908988 A
1 A
48908989 TTACTGGTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (20 bp):
AATATTGACAGTTTAGCTGC
Found at i:48909019 original size:60 final size:60
Alignment explanation
Indices: 48908917--48909029 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 60
48908907 AAGTACTGGC
* * ***
48908917 AGTTTATCTACATTATTGGTGGCTTGTCCAGAATATTGGCAGTTTAG-CTGCAATATTGAT
1 AGTTTATCTACATTACTGGTGGCTTGTCCACAATACCAGCAGTTT-GTCTGCAATATTGAT
* *
48908977 AGTTTATCTGCATTACTGGTGGCTTGTCCACATTACCAGCAGTTTGTCTGCAA
1 AGTTTATCTACATTACTGGTGGCTTGTCCACAATACCAGCAGTTTGTCTGCAA
48909030 GTTTGGCGGA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
59 1 0.02
60 44 0.98
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.38
Consensus pattern (60 bp):
AGTTTATCTACATTACTGGTGGCTTGTCCACAATACCAGCAGTTTGTCTGCAATATTGAT
Found at i:48910572 original size:23 final size:23
Alignment explanation
Indices: 48910546--48910607 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
48910536 TCCAAATAGA
*
48910546 GCCTTTGTAGCATATTCTAAAAT
1 GCCTTTGTGGCATATTCTAAAAT
* **
48910569 GCCTTTGTGGCATATCCTGTAAT
1 GCCTTTGTGGCATATTCTAAAAT
48910592 GCCTTTGTGGCATATT
1 GCCTTTGTGGCATATT
48910608 ACAATACAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40
Consensus pattern (23 bp):
GCCTTTGTGGCATATTCTAAAAT
Found at i:48916407 original size:34 final size:34
Alignment explanation
Indices: 48916363--48916430 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
48916353 GCAGAGTTAA
* *
48916363 ACAGTCTTGGGCCTAAGCCCTTTTCAGTATCAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTAT-AGTG
*
48916398 ACAGT-TTGGGCCTTAGCCCATCTCAGTATAGTG
1 ACAGTCTTGGGCCTAAGCCCATCTCAGTATAGTG
48916431 TAAAAAATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 4 0.13
34 21 0.70
35 5 0.17
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.31
Consensus pattern (34 bp):
ACAGTCTTGGGCCTAAGCCCATCTCAGTATAGTG
Found at i:48921028 original size:15 final size:15
Alignment explanation
Indices: 48920984--48921021 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
48920974 AAATGAGACA
*
48920984 CATGAATTATGTATT
1 CATGAATTACGTATT
48920999 CATGAATTACGTATT
1 CATGAATTACGTATT
48921014 CATGAATT
1 CATGAATT
48921022 GGATATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (15 bp):
CATGAATTACGTATT
Found at i:48926143 original size:33 final size:33
Alignment explanation
Indices: 48926087--48926170 Score: 134
Period size: 33 Copynumber: 2.6 Consensus size: 33
48926077 GTGTGTGGCC
* *
48926087 GTGTGGG-CCATACGAGCAAGGCGACTTTGGGA
1 GTGTGGGCCCACACGGGCAAGGCGACTTTGGGA
*
48926119 GTGTGGGCCCACATGGGCAAGGCGACTTTGGGA
1 GTGTGGGCCCACACGGGCAAGGCGACTTTGGGA
48926152 GTGTGGGCCCACACGGGCA
1 GTGTGGGCCCACACGGGCA
48926171 TGTGGACCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
32 7 0.15
33 40 0.85
ACGTcount: A:0.19, C:0.23, G:0.42, T:0.17
Consensus pattern (33 bp):
GTGTGGGCCCACACGGGCAAGGCGACTTTGGGA
Found at i:48929184 original size:12 final size:12
Alignment explanation
Indices: 48929167--48929193 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
48929157 ATTCCGAAGT
48929167 ATATATATATAC
1 ATATATATATAC
48929179 ATATATATATAC
1 ATATATATATAC
48929191 ATA
1 ATA
48929194 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:48929726 original size:27 final size:28
Alignment explanation
Indices: 48929642--48929739 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
48929632 CATGAGATTG
* * * *
48929642 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
48929671 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
48929699 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
48929726 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
48929740 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:48929750 original size:27 final size:27
Alignment explanation
Indices: 48929670--48929752 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
48929660 TAAATTGTAC
* *
48929670 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
48929698 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
48929725 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
48929752 A
1 A
48929753 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:48933289 original size:25 final size:24
Alignment explanation
Indices: 48933245--48933295 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 24
48933235 ATTTTGAAGT
*
48933245 TTTAATACAATTGCTAATTTTATCA
1 TTTAATACAATT-CTAATTTAATCA
48933270 TTTAATACATATT-TATATTTAATCA
1 TTTAATACA-ATTCTA-ATTTAATCA
48933295 T
1 T
48933296 GTATATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 2 0.09
25 18 0.78
26 3 0.13
ACGTcount: A:0.37, C:0.10, G:0.02, T:0.51
Consensus pattern (24 bp):
TTTAATACAATTCTAATTTAATCA
Found at i:48935650 original size:46 final size:46
Alignment explanation
Indices: 48935491--48935712 Score: 202
Period size: 46 Copynumber: 4.8 Consensus size: 46
48935481 GGGTTATTGT
* * * * *
48935491 GAGCTAGTGTAAGACATGTTTGGGACATGCATCAGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGA
* ** * *
48935537 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGTGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGA
* * *
48935585 GTGCTAGTGTAAGATATGTCTGGGACATGCAACGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-A
* *
48935632 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGA
*
48935677 G-TC-AGTGTAAGACCATGTCTGGGACATGTCATCGGC
1 GAGCTAGTGTAAGA-CATGTCTGGGACATG-CATCGGC
48935713 ACAGATACAC
Statistics
Matches: 143, Mismatches: 24, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
44 9 0.06
45 18 0.13
46 68 0.48
47 27 0.19
48 21 0.15
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGA
Found at i:48942147 original size:46 final size:45
Alignment explanation
Indices: 48942089--48942352 Score: 182
Period size: 46 Copynumber: 5.6 Consensus size: 45
48942079 GGGTTATTGT
48942089 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATAA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAT-A
* * *
48942135 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CA-TTGTGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACAT-T-AT-A
* * * * *
48942183 GTGGTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGA-GACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTA--TA
* * *
48942230 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-TATGAGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATA
* * *
48942272 TGTGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATACTA
1 -GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACAT-TA-TA
* *
48942323 GAACTTA-TGTAAGAGCATGTTTGGGACATG
1 GAGC-TAGTGTAAGA-CATGTCTGGGACATG
48942353 GCGTCGATGT
Statistics
Matches: 171, Mismatches: 27, Indels: 37
0.73 0.11 0.16
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 13 0.08
45 15 0.09
46 59 0.35
47 32 0.19
48 22 0.13
49 3 0.02
50 22 0.13
51 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATA
Found at i:48942334 original size:94 final size:93
Alignment explanation
Indices: 48942093--48942352 Score: 268
Period size: 94 Copynumber: 2.8 Consensus size: 93
48942083 TATTGTGAGC
* *
48942093 TAGTGTAAGACATGTCTGGGACATGCATCGGCCACAT-TA-TAAGAGCCAGTGTAAGACCATGTC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATATACT-AGAGCTAGTGTAAGACCATGTC
*
48942156 TGGGACATGGCATCAGCATTGTGATGAGTGG
65 TGGGACAT-GCATCAGCATTGAGAT-AGTGG
* * *
48942187 TAGTGTAAGACATGTTTGGGACATGCATCGGCCTCG--AGACGTA-AGCTAGTGTAAGA-CATGT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCC-AGATATAC-TAGAGCTAGTGTAAGACCATGT
* *
48942248 CTGGGACATGCATCGGC-TATGAGAT-GTGT
64 CTGGGACATGCATCAGCAT-TGAGATAGTGG
* *
48942277 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATACTAGAACTTA-TGTAAGAGCAT
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CAGATATACTAGAGC-TAGTGTAAGACCAT
*
48942341 GTTTGGGACATG
62 GTCTGGGACATG
48942353 GCGTCGATGT
Statistics
Matches: 140, Mismatches: 13, Indels: 25
0.79 0.07 0.14
Matches are distributed among these distances:
90 13 0.09
91 14 0.10
92 21 0.15
93 17 0.12
94 57 0.41
95 17 0.12
96 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (93 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATATACTAGAGCTAGTGTAAGACCATGTCT
GGGACATGCATCAGCATTGAGATAGTGG
Found at i:48943596 original size:43 final size:44
Alignment explanation
Indices: 48943529--48943656 Score: 124
Period size: 44 Copynumber: 3.0 Consensus size: 44
48943519 CTCGTACAAC
* * *
48943529 GCCAACATCCCAGACGT-GTCTTACATGTAATCACATAAT-GAT
1 GCCAACGTCCCAGAAGTGGTCTTACATGAAATCACATAATCGAT
* *
48943571 GCC-ACTTTCCCAGATAG-GGTCTTACACGCAAATCACA-AATCGAT
1 GCCAAC-GTCCCAGA-AGTGGTCTTACATG-AAATCACATAATCGAT
* *
48943615 GCCAACGTCCCAGACGTGGTCTTACATGAAAACACAT-ATCGA
1 GCCAACGTCCCAGAAGTGGTCTTACATGAAATCACATAATCGA
48943657 AATCCTATGT
Statistics
Matches: 70, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
41 2 0.03
42 10 0.14
43 26 0.37
44 30 0.43
45 2 0.03
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (44 bp):
GCCAACGTCCCAGAAGTGGTCTTACATGAAATCACATAATCGAT
Found at i:48944782 original size:13 final size:13
Alignment explanation
Indices: 48944764--48944790 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
48944754 CGCAAATGAT
48944764 AAAATTTTCACAC
1 AAAATTTTCACAC
48944777 AAAATTTTCACAC
1 AAAATTTTCACAC
48944790 A
1 A
48944791 TATAATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:48947679 original size:43 final size:43
Alignment explanation
Indices: 48947587--48947700 Score: 149
Period size: 43 Copynumber: 2.7 Consensus size: 43
48947577 ATCGAGATGA
* * * * *
48947587 GATTACATGTAAAACCATGTCTAGGACATTGGCATTGTATTGC
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGC
48947630 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAATGC
* *
48947673 GGTTACGTGTAAGACCCTGTCTGGGACA
1 GATTACGTGTAAGACCATGTCTGGGACA
48947701 GTGGTGTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
43 60 0.95
44 3 0.05
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGC
Found at i:48964199 original size:44 final size:44
Alignment explanation
Indices: 48964067--48964233 Score: 146
Period size: 43 Copynumber: 3.9 Consensus size: 44
48964057 AGCTCGTACA
* * * * *
48964067 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACA-TATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATTAACG
* * ** * *
48964109 GTGCCGATAG-CCCAGTTATGGTCTTACACGAAATTA-ATTAACG
1 ATGCCAAT-GTCCCAGACATGGTCTTACACGTAATCACATTAACG
** *
48964152 ATGCCAATGTCCGTTGACATGGTCTTACACGTAATCACA-TAATG
1 ATGCCAATGTCC-CAGACATGGTCTTACACGTAATCACATTAACG
*
48964196 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA
48964234 ACTCCTTAAT
Statistics
Matches: 99, Mismatches: 20, Indels: 11
0.76 0.15 0.08
Matches are distributed among these distances:
42 6 0.06
43 58 0.59
44 34 0.34
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATTAACG
Found at i:48964230 original size:43 final size:45
Alignment explanation
Indices: 48964126--48964233 Score: 134
Period size: 44 Copynumber: 2.5 Consensus size: 45
48964116 TAGCCCAGTT
* **
48964126 ATGGTCTTACACGA-AATTA-ATTAACGATGCCAATGTCCGTTGAC
1 ATGGTCTTACAC-ATAATCACATTAACGATGCCAATGTCCGCAGAC
* *
48964170 ATGGTCTTACACGTAATCACA-TAATGATGCCAATGTCC-CAGAC
1 ATGGTCTTACACATAATCACATTAACGATGCCAATGTCCGCAGAC
48964213 ATGGTCTTACACATAATCACA
1 ATGGTCTTACACATAATCACA
48964234 ACTCCTTAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
43 23 0.41
44 32 0.57
45 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (45 bp):
ATGGTCTTACACATAATCACATTAACGATGCCAATGTCCGCAGAC
Found at i:48975369 original size:27 final size:27
Alignment explanation
Indices: 48975338--48975515 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
48975328 TAAATTGTAC
48975338 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
48975365 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
48975391 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
48975419 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
48975447 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
48975474 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
48975501 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
48975516 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:48975452 original size:82 final size:81
Alignment explanation
Indices: 48975339--48975494 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
48975329 AAATTGTACA
* *
48975339 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
48975403 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
48975420 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
48975485 TGCGAGTTGA
65 TGCGAATTGA
48975495 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:48975506 original size:82 final size:81
Alignment explanation
Indices: 48975335--48975515 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
48975325 GATTAAATTG
* *
48975335 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
48975400 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
48975416 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
48975480 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
48975498 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
48975516 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:48990717 original size:78 final size:80
Alignment explanation
Indices: 48990575--48990797 Score: 244
Period size: 79 Copynumber: 2.8 Consensus size: 80
48990565 TTGAATGATG
* * * * * *
48990575 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCAAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
48990637 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
48990654 TCTGGGCTAAG-CCCAAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCAAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
48990715 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* * *
48990732 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCAAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
48990797 G
66 G
48990798 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
78 44 0.36
79 55 0.45
80 22 0.18
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCAAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:48990759 original size:40 final size:40
Alignment explanation
Indices: 48990575--48990797 Score: 253
Period size: 39 Copynumber: 5.7 Consensus size: 40
48990565 TTGAATGATG
* *
48990575 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
48990614 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
48990654 TCTGGGCTAAG-CCCAAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
48990693 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
48990732 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
48990773 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48990798 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
39 89 0.55
40 62 0.39
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:48990819 original size:79 final size:79
Alignment explanation
Indices: 48990575--48990830 Score: 199
Period size: 79 Copynumber: 3.3 Consensus size: 79
48990565 TTGAATGATG
* * * *
48990575 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
48990636 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* * * *
48990654 TCTGGGCTAAG-CCCAAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
48990718 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
48990732 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
48990795 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
48990812 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
48990831 TACGTGATTT
Statistics
Matches: 149, Mismatches: 18, Indels: 20
0.80 0.10 0.11
Matches are distributed among these distances:
77 1 0.01
78 44 0.30
79 67 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:48996602 original size:40 final size:40
Alignment explanation
Indices: 48996551--48996707 Score: 233
Period size: 40 Copynumber: 3.9 Consensus size: 40
48996541 ATAACTGCAA
* * * *
48996551 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
48996591 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
48996631 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
48996671 GCACAAATGCCTTCGGGTCTTAGCCCGAATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
48996708 ATGCTCATGC
Statistics
Matches: 104, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:48996669 original size:80 final size:80
Alignment explanation
Indices: 48996555--48996707 Score: 261
Period size: 80 Copynumber: 1.9 Consensus size: 80
48996545 CTGCAAGCAC
* * *
48996555 AATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGA
1 AATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGAA
48996620 TATATCAACTTGCAT
66 TATATCAACTTGCAT
* *
48996635 AATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGAA
1 AATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGAA
48996700 TATATCAA
66 TATATCAA
48996708 ATGCTCATGC
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 68 1.00
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (80 bp):
AATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGAA
TATATCAACTTGCAT
Found at i:49003230 original size:57 final size:57
Alignment explanation
Indices: 49003142--49003354 Score: 426
Period size: 57 Copynumber: 3.7 Consensus size: 57
49003132 GGCGCTGTCC
49003142 CTTGTGCGGGAGCAGGCGCTACACTCTCAAGATCATCAGCTAGGCCTAGCTTATGAT
1 CTTGTGCGGGAGCAGGCGCTACACTCTCAAGATCATCAGCTAGGCCTAGCTTATGAT
49003199 CTTGTGCGGGAGCAGGCGCTACACTCTCAAGATCATCAGCTAGGCCTAGCTTATGAT
1 CTTGTGCGGGAGCAGGCGCTACACTCTCAAGATCATCAGCTAGGCCTAGCTTATGAT
49003256 CTTGTGCGGGAGCAGGCGCTACACTCTCAAGATCATCAGCTAGGCCTAGCTTATGAT
1 CTTGTGCGGGAGCAGGCGCTACACTCTCAAGATCATCAGCTAGGCCTAGCTTATGAT
49003313 CTTGTGCGGGAGCAGGCGCTACACTCTCAAGATCATCAGCTA
1 CTTGTGCGGGAGCAGGCGCTACACTCTCAAGATCATCAGCTA
49003355 CCTCTCGGTC
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 156 1.00
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (57 bp):
CTTGTGCGGGAGCAGGCGCTACACTCTCAAGATCATCAGCTAGGCCTAGCTTATGAT
Found at i:49005617 original size:14 final size:15
Alignment explanation
Indices: 49005600--49005631 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
49005590 AAATCACGAA
49005600 AAATTCACACAT-AT
1 AAATTCACACATAAT
49005614 AAATTCACACATAAT
1 AAATTCACACATAAT
49005629 AAA
1 AAA
49005632 CACAAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (15 bp):
AAATTCACACATAAT
Found at i:49012828 original size:39 final size:39
Alignment explanation
Indices: 49012774--49012852 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
49012764 CTAATAATGA
49012774 TTACTTAAATGGAAATTTGTTTGGAATTGTAAATTCTTG
1 TTACTTAAATGGAAATTTGTTTGGAATTGTAAATTCTTG
49012813 TTACTTAAATGGAAATTTGTTTGGAATTGTAAATTCTTG
1 TTACTTAAATGGAAATTTGTTTGGAATTGTAAATTCTTG
49012852 T
1 T
49012853 CTCATTAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.30, C:0.05, G:0.18, T:0.47
Consensus pattern (39 bp):
TTACTTAAATGGAAATTTGTTTGGAATTGTAAATTCTTG
Found at i:49014855 original size:37 final size:36
Alignment explanation
Indices: 49014796--49014872 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 36
49014786 AACATAAAAG
49014796 AAATTAAACAAACAAAAGGTAAGAAATCAAATAAGGA
1 AAATTAAACAAACAAAAGGTAAGAAATCAAATAA-GA
* *
49014833 AAATTAAATAAATGAAAA-GTAAGAAATCAAATAAGA
1 AAATTAAACAAA-CAAAAGGTAAGAAATCAAATAAGA
49014869 AAAT
1 AAAT
49014873 ATGTATCAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
36 6 0.16
37 27 0.73
38 4 0.11
ACGTcount: A:0.66, C:0.05, G:0.12, T:0.17
Consensus pattern (36 bp):
AAATTAAACAAACAAAAGGTAAGAAATCAAATAAGA
Found at i:49016785 original size:49 final size:47
Alignment explanation
Indices: 49016673--49016889 Score: 158
Period size: 49 Copynumber: 4.6 Consensus size: 47
49016663 TAATGCTGAT
* * * * *
49016673 GCCATGTCCTAAACATGGTCTTACACTGGCTCATCCATCAAGTCGAT
1 GCCATGTCCTAGACATGGTCTTACACTGACTCATCAATCAAGCCGAC
* * *
49016720 GCCATGTCCCAGACATGGTCTTACACTGACT-ATCGAATTTGAGGCCGAC
1 GCCATGTCCTAGACATGGTCTTACACTGACTCATC-AA--TCAAGCCGAC
* ** * *
49016769 GCCATGTCCTAGACATGGTCTTACACTAGTTCTCA-CATATCCGTGACGAT
1 GCCATGTCCTAGACATGGTCTTACACT-G-ACTCATCA-AT-CAAGCCGAC
* * * *
49016819 GCCATGTCCTAAACATGGTCTTACACTGACACATC--TCATAGTCGAT
1 GCCATGTCCTAGACATGGTCTTACACTGACTCATCAATCA-AGCCGAC
*
49016865 G-CATGTCCCAGACAT-GTCTTACACT
1 GCCATGTCCTAGACATGGTCTTACACT
49016890 AGCTCACCCA
Statistics
Matches: 137, Mismatches: 23, Indels: 23
0.75 0.13 0.13
Matches are distributed among these distances:
44 10 0.07
45 13 0.09
46 10 0.07
47 29 0.21
48 3 0.02
49 35 0.26
50 32 0.23
51 4 0.03
52 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
GCCATGTCCTAGACATGGTCTTACACTGACTCATCAATCAAGCCGAC
Found at i:49019998 original size:23 final size:24
Alignment explanation
Indices: 49019931--49020024 Score: 102
Period size: 25 Copynumber: 3.8 Consensus size: 24
49019921 TCCTCTACAT
49019931 GTATGCTCATAAGAGCTGT-GAATCG
1 GTATGCTCAT-AGAGCTGTAG-ATCG
* *
49019956 GTATGCTCACTCGAGCTGTAGATTG
1 GTATGCTCA-TAGAGCTGTAGATCG
*
49019981 GTATGCTCAT-GAGCTGTAAATCG
1 GTATGCTCATAGAGCTGTAGATCG
*
49020004 GTATGCTCACATGAGCTGTAG
1 GTATGCTCATA-GAGCTGTAG
49020025 GATAAAACGT
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
23 20 0.34
24 1 0.02
25 36 0.61
26 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (24 bp):
GTATGCTCATAGAGCTGTAGATCG
Found at i:49020004 original size:48 final size:49
Alignment explanation
Indices: 49019931--49020024 Score: 147
Period size: 48 Copynumber: 1.9 Consensus size: 49
49019921 TCCTCTACAT
*
49019931 GTATGCTCATAAGAGCTGTGAATCGGTATGCTCAC-TCGAGCTGTAGATTG
1 GTATGCTCAT-AGAGCTGTAAATCGGTATGCTCACAT-GAGCTGTAGATTG
49019981 GTATGCTCAT-GAGCTGTAAATCGGTATGCTCACATGAGCTGTAG
1 GTATGCTCATAGAGCTGTAAATCGGTATGCTCACATGAGCTGTAG
49020025 GATAAAACGT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
48 31 0.74
49 1 0.02
50 10 0.24
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
GTATGCTCATAGAGCTGTAAATCGGTATGCTCACATGAGCTGTAGATTG
Found at i:49022720 original size:47 final size:47
Alignment explanation
Indices: 49022625--49022754 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 47
49022615 GTGCGAATGA
* * * * *
49022625 TACCTTGATTT-TCTATAGGCCATGGTATAGATATTTCAGAGAGGAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTA-CTCAGAGAGAAGT
* * *
49022672 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCAGAGAGAAGT
* *
49022719 TACCTAGATTTGGCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACT
49022755 TATTGATAGT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
47 53 0.74
48 19 0.26
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCAGAGAGAAGT
Found at i:49031475 original size:43 final size:42
Alignment explanation
Indices: 49031401--49031482 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 42
49031391 TCTGAACTCA
* * **
49031401 TTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATAACAT
1 TTCACCGGCATTTAGCCTACTAGGCCCGAAGCCCGATAACAT
* *
49031443 TTCACGGGCATTATAGCCTACTAGGCCCGAAGCGCGATAA
1 TTCACCGGCATT-TAGCCTACTAGGCCCGAAGCCCGATAA
49031483 TATTATTCAC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 11 0.33
43 22 0.67
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (42 bp):
TTCACCGGCATTTAGCCTACTAGGCCCGAAGCCCGATAACAT
Found at i:49031679 original size:28 final size:28
Alignment explanation
Indices: 49031641--49031738 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
49031631 GAATCATTCG
* *
49031641 ATATTTTGCACACGAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
* *
49031669 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGTCATTCTCA
*
49031697 ATATTTCGTACACTAAGT-TCCATTCTCA
1 ATATTTCGCACACTAAGTGT-CATTCTCA
*
49031725 ATATTTCGTACACT
1 ATATTTCGCACACT
49031739 GAGTACCATA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.36
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGTCATTCTCA
Found at i:49031747 original size:28 final size:28
Alignment explanation
Indices: 49031661--49031747 Score: 129
Period size: 28 Copynumber: 3.1 Consensus size: 28
49031651 CACGAAGTGT
* * *
49031661 CATTCTCAATATCTCGCACACTAAGTGC
1 CATTCTCAATATTTCGTACACTAAGTAC
*
49031689 CATTCTCAATATTTCGTACACTAAGTTC
1 CATTCTCAATATTTCGTACACTAAGTAC
*
49031717 CATTCTCAATATTTCGTACACTGAGTAC
1 CATTCTCAATATTTCGTACACTAAGTAC
49031745 CAT
1 CAT
49031748 ATTTGATTGC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (28 bp):
CATTCTCAATATTTCGTACACTAAGTAC
Found at i:49032029 original size:35 final size:35
Alignment explanation
Indices: 49031983--49032059 Score: 136
Period size: 35 Copynumber: 2.2 Consensus size: 35
49031973 TAATCAATCA
*
49031983 AATTCAACTATTACAATTCATATTCTATTCATTTT
1 AATTCAACTATTACAATTCATATTCTATTCAATTT
49032018 AATTCAACTATTACAATTCATATTCTATTCAATTT
1 AATTCAACTATTACAATTCATATTCTATTCAATTT
*
49032053 AACTCAA
1 AATTCAA
49032060 TTTCATATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (35 bp):
AATTCAACTATTACAATTCATATTCTATTCAATTT
Found at i:49034870 original size:62 final size:62
Alignment explanation
Indices: 49034773--49034897 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
49034763 CTAAATTGAG
49034773 GGAAAGAGAAAGTTTAGGATTAGTAAATTCATATACTTGAACAAGTGTCGAGGTAAGTTTGT
1 GGAAAGAGAAAGTTTAGGATTAGTAAATTCATATACTTGAACAAGTGTCGAGGTAAGTTTGT
49034835 GGAAAGAGAAAGTTTAGGATTAGTAAATTCATATACTTGAACAAGTGTCGAGGTAAGTTTGT
1 GGAAAGAGAAAGTTTAGGATTAGTAAATTCATATACTTGAACAAGTGTCGAGGTAAGTTTGT
49034897 G
1 G
49034898 TAACTTAATT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.30
Consensus pattern (62 bp):
GGAAAGAGAAAGTTTAGGATTAGTAAATTCATATACTTGAACAAGTGTCGAGGTAAGTTTGT
Found at i:49036940 original size:26 final size:23
Alignment explanation
Indices: 49036877--49036934 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
49036867 ATCGCAGCGT
49036877 AGCTGCTAATAGTAACGCAACAA
1 AGCTGCTAATAGTAACGCAACAA
*
49036900 AGCTGCTAATAGTAACGCAGCAA
1 AGCTGCTAATAGTAACGCAACAA
49036923 AGCTGCTAATAG
1 AGCTGCTAATAG
49036935 CAGTAAACGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (23 bp):
AGCTGCTAATAGTAACGCAACAA
Found at i:49040880 original size:50 final size:49
Alignment explanation
Indices: 49040825--49040956 Score: 142
Period size: 52 Copynumber: 2.7 Consensus size: 49
49040815 AAATGAACAG
49040825 ATGAGTTACTTAATGCATGACTTAATTTAATGATGAAAACTTTAACTAAC
1 ATGAGTTACTTAATGCATGACTTAATTTAATGATGAAAAC-TTAACTAAC
* * * * * * *
49040875 TTGAGTTTTACATAAAGCATGTCATAATTT-ATGATGCAGACTTAACTAAC
1 ATGAG--TTACTTAATGCATGACTTAATTTAATGATGAAAACTTAACTAAC
*
49040925 ATGAGTTA-TATAATGCATGACTTTATTTAATG
1 ATGAGTTACT-TAATGCATGACTTAATTTAATG
49040957 CAAAACACAT
Statistics
Matches: 65, Mismatches: 13, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
48 17 0.26
49 3 0.05
50 17 0.26
51 9 0.14
52 19 0.29
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (49 bp):
ATGAGTTACTTAATGCATGACTTAATTTAATGATGAAAACTTAACTAAC
Found at i:49041003 original size:33 final size:35
Alignment explanation
Indices: 49040953--49041022 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
49040943 GACTTTATTT
* *
49040953 AATGCAAAACACATAATG-CATGTCATAATTAAAA
1 AATGCAAAACACATAATGACAAGACATAATTAAAA
*
49040987 AATGC-AAACACTTAATGATCAAGACATAATTAAAA
1 AATGCAAAACACATAATGA-CAAGACATAATTAAAA
49041022 A
1 A
49041023 CTGTAGAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 11 0.35
34 5 0.16
35 15 0.48
ACGTcount: A:0.54, C:0.14, G:0.09, T:0.23
Consensus pattern (35 bp):
AATGCAAAACACATAATGACAAGACATAATTAAAA
Found at i:49048009 original size:28 final size:28
Alignment explanation
Indices: 49047974--49048044 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
49047964 AATTTTAATG
49047974 CATG-TTTTAAATATGTCATAGT-TAGTA
1 CATGATTTT-AATATGTCATAGTCTAGTA
* * *
49048001 CATGATTTTAATGTGTCTTAGTCTATTA
1 CATGATTTTAATATGTCATAGTCTAGTA
49048029 CAT-ATTTTTAATATGT
1 CATGA-TTTTAATATGT
49048045 TTTAGCCGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 16 0.43
28 21 0.57
ACGTcount: A:0.30, C:0.08, G:0.13, T:0.49
Consensus pattern (28 bp):
CATGATTTTAATATGTCATAGTCTAGTA
Found at i:49048017 original size:27 final size:29
Alignment explanation
Indices: 49047974--49048044 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 29
49047964 AATTTTAATG
49047974 CATG-TTTTAAATATGTCATAGT-TAGTA
1 CATGATTTTAAATATGTCATAGTCTAGTA
* * *
49048001 CATGATTTT-AATGTGTCTTAGTCTATTA
1 CATGATTTTAAATATGTCATAGTCTAGTA
*
49048029 CAT-ATTTTTAATATGT
1 CATGATTTTAAATATGT
49048045 TTTAGCCGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 20 0.54
28 17 0.46
ACGTcount: A:0.30, C:0.08, G:0.13, T:0.49
Consensus pattern (29 bp):
CATGATTTTAAATATGTCATAGTCTAGTA
Found at i:49050375 original size:21 final size:21
Alignment explanation
Indices: 49050349--49050389 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
49050339 AGAAATTGAA
49050349 AAAGAAAAAAGAGAGTGAGAG
1 AAAGAAAAAAGAGAGTGAGAG
* *
49050370 AAAGAAAAATGAGATTGAGA
1 AAAGAAAAAAGAGAGTGAGA
49050390 TTGAAAAAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.29, T:0.10
Consensus pattern (21 bp):
AAAGAAAAAAGAGAGTGAGAG
Found at i:49050389 original size:19 final size:18
Alignment explanation
Indices: 49050330--49050389 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 18
49050320 ATGAAAAAAT
*
49050330 GAAAGAAAAAGAAATTGA
1 GAAAGAAAAAGAGATTGA
* *
49050348 AAAAGAAAAAAGAGAGTGAGA
1 GAAAG-AAAAAGAGA-T-TGA
49050369 GAAAGAAAAATGAGATTGA
1 GAAAGAAAAA-GAGATTGA
49050388 GA
1 GA
49050390 TTGAAAAAGC
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
18 4 0.12
19 12 0.36
20 7 0.21
21 10 0.30
ACGTcount: A:0.63, C:0.00, G:0.27, T:0.10
Consensus pattern (18 bp):
GAAAGAAAAAGAGATTGA
Found at i:49059507 original size:10 final size:11
Alignment explanation
Indices: 49059490--49059523 Score: 52
Period size: 10 Copynumber: 3.1 Consensus size: 11
49059480 CTGTTTAATC
49059490 CAAAATTTGAT
1 CAAAATTTGAT
49059501 C-AAATTTGAT
1 CAAAATTTGAT
49059511 CCAAAATTTGAT
1 -CAAAATTTGAT
49059523 C
1 C
49059524 TGTTGCCACT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 9 0.43
11 3 0.14
12 9 0.43
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (11 bp):
CAAAATTTGAT
Found at i:49059519 original size:12 final size:12
Alignment explanation
Indices: 49059487--49059523 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
49059477 TGACTGTTTA
49059487 ATCCAAAATTTG
1 ATCCAAAATTTG
49059499 AT-C-AAATTTG
1 ATCCAAAATTTG
49059509 ATCCAAAATTTG
1 ATCCAAAATTTG
49059521 ATC
1 ATC
49059524 TGTTGCCACT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 9 0.39
11 2 0.09
12 12 0.52
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (12 bp):
ATCCAAAATTTG
Found at i:49060162 original size:53 final size:53
Alignment explanation
Indices: 49060082--49060189 Score: 207
Period size: 53 Copynumber: 2.0 Consensus size: 53
49060072 GCTTGAGTCA
49060082 GAACAAACTTGAGTTTCTCAAAGCTCGATTGCTACGTATCCATCTAGACAAAT
1 GAACAAACTTGAGTTTCTCAAAGCTCGATTGCTACGTATCCATCTAGACAAAT
*
49060135 GAACAAACTTGAGTTTCTCAAAGCTCGATTGCTACGTATCTATCTAGACAAAT
1 GAACAAACTTGAGTTTCTCAAAGCTCGATTGCTACGTATCCATCTAGACAAAT
49060188 GA
1 GA
49060190 TACACCCTTA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (53 bp):
GAACAAACTTGAGTTTCTCAAAGCTCGATTGCTACGTATCCATCTAGACAAAT
Found at i:49062884 original size:27 final size:28
Alignment explanation
Indices: 49062844--49062904 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 28
49062834 CCAACAAAGA
* *
49062844 AACAG-ATAAGGT-GGCCTTAGCCCATT
1 AACAGAATAAGGTGGGCCTAAGCCCAAT
*
49062870 AACAGAATCAGGTGGGCCTAAGCCCAAT
1 AACAGAATAAGGTGGGCCTAAGCCCAAT
49062898 -ACAGAAT
1 AACAGAAT
49062905 TAGTATCAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 5 0.17
27 13 0.43
28 12 0.40
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (28 bp):
AACAGAATAAGGTGGGCCTAAGCCCAAT
Found at i:49074563 original size:51 final size:49
Alignment explanation
Indices: 49074433--49074591 Score: 194
Period size: 49 Copynumber: 3.2 Consensus size: 49
49074423 TAGCCAAAGC
* *
49074433 TATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAAA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAA
* * * * * * *
49074482 TATCCAGCACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-A
*
49074533 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAA
49074581 TAATCCGGTAC
1 T-ATCCGGTAC
49074592 ATGTAGTAGC
Statistics
Matches: 89, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 46 0.52
50 4 0.04
51 38 0.43
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (49 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAA
Found at i:49079474 original size:47 final size:47
Alignment explanation
Indices: 49079419--49080414 Score: 1725
Period size: 47 Copynumber: 21.5 Consensus size: 47
49079409 ATTCAGCCAA
*
49079419 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
49079466 GAAAGTGTATATGTGTGATAAGGCCT-AT-G--AATGTGA--AA-GT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * *
49079506 GTATATGTGT-GATA----A---GGCCTAATAGCCGATGTGATGAATGT
1 G-A-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
49079547 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49079594 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49079641 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49079688 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49079735 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49079782 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49079829 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49079876 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49079923 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49079970 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49080017 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49080064 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49080111 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49080158 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49080205 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49080252 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
49080299 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * *
49080346 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
49080393 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
49080415 TCCCGAAGGA
Statistics
Matches: 911, Mismatches: 21, Indels: 34
0.94 0.02 0.04
Matches are distributed among these distances:
34 5 0.01
35 2 0.00
36 1 0.00
37 1 0.00
38 6 0.01
39 5 0.01
40 9 0.01
41 8 0.01
42 5 0.01
43 6 0.01
44 1 0.00
45 1 0.00
46 2 0.00
47 859 0.94
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:49079494 original size:16 final size:16
Alignment explanation
Indices: 49079475--49079526 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
49079465 TGAAAGTGTA
49079475 TATGTGTGATAAGGCC
1 TATGTGTGATAAGGCC
**
49079491 TATGAATGTGA-AAGTGTA
1 TATG--TGTGATAAG-GCC
49079509 TATGTGTGATAAGGCC
1 TATGTGTGATAAGGCC
49079525 TA
1 TA
49079527 ATAGCCGATG
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
16 12 0.43
17 6 0.21
18 10 0.36
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.33
Consensus pattern (16 bp):
TATGTGTGATAAGGCC
Found at i:49079497 original size:34 final size:34
Alignment explanation
Indices: 49079458--49079526 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
49079448 AGCCGATGTG
49079458 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCT
1 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCT
49079492 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCT
1 ATGAATGTGAAAGTGTATATGTGTGATAAGGCCT
49079526 A
1 A
49079527 ATAGCCGATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (34 bp):
ATGAATGTGAAAGTGTATATGTGTGATAAGGCCT
Found at i:49079512 original size:18 final size:18
Alignment explanation
Indices: 49079458--49079512 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
49079448 AGCCGATGTG
49079458 ATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTAT
**
49079476 ATG--TGTGATAAG-GCCT
1 ATGAATGTGA-AAGTGTAT
49079492 ATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTAT
49079510 ATG
1 ATG
49079513 TGTGATAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
16 10 0.34
17 6 0.21
18 13 0.45
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.33
Consensus pattern (18 bp):
ATGAATGTGAAAGTGTAT
Found at i:49080589 original size:37 final size:37
Alignment explanation
Indices: 49080533--49080611 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
49080523 CCGAGCTCTA
* *
49080533 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCAGGT
* *
49080570 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
49080607 AAGAC
1 AAGAC
49080612 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:49082553 original size:29 final size:29
Alignment explanation
Indices: 49082518--49082591 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
49082508 GTTGTGAGAT
* *
49082518 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
49082547 TGGCACTAAGTGTGTGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
49082576 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
49082592 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:49089029 original size:40 final size:40
Alignment explanation
Indices: 49088973--49089116 Score: 204
Period size: 40 Copynumber: 3.6 Consensus size: 40
49088963 GGATGGTAAC
* * *
49088973 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATA
49089012 CTGGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATATA
1 C-GGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTATATA
49089053 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-A
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATA
*
49089092 CCGGGATAAGTCCCGAAGGCATTTG
1 -CGGGCTAAGTCCCGAAGGCATTTG
49089117 AGCAAGTAGT
Statistics
Matches: 96, Mismatches: 4, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
39 3 0.03
40 89 0.93
41 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATA
Found at i:49089416 original size:22 final size:21
Alignment explanation
Indices: 49089375--49089418 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
49089365 GAATGTGCAT
49089375 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
49089397 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
49089419 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:49101229 original size:39 final size:40
Alignment explanation
Indices: 49101124--49101331 Score: 244
Period size: 40 Copynumber: 5.2 Consensus size: 40
49101114 TATTCGAATG
* * *
49101124 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
49101165 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
49101205 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
49101244 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * *
49101284 ATAACCGGGCTATGTCCCGAAGGCATTTGAGTGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
49101324 ATATCCGG
1 ATATCCGG
49101332 TTAAATTCCG
Statistics
Matches: 146, Mismatches: 15, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 37 0.25
40 80 0.55
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:49101264 original size:79 final size:81
Alignment explanation
Indices: 49101124--49101310 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 81
49101114 TATTCGAATG
* * *
49101124 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGC
49101189 ATTTGTGCGAGTTACT
66 ATTTGTGCGAGTTACT
* * **
49101205 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAG
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAG
*
49101266 GCATTTGTGTGAGTTACT
64 GCATTTGTGCGAGTTACT
* *
49101284 ATAACCGGGCTATGTCCCGAAGGCATT
1 ATATCCGGGCTAAGTCCCGAAGGCATT
49101311 TGAGTGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 50 0.54
80 29 0.32
81 12 0.13
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (81 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGC
ATTTGTGCGAGTTACT
Found at i:49101334 original size:79 final size:78
Alignment explanation
Indices: 49101128--49101345 Score: 228
Period size: 79 Copynumber: 2.7 Consensus size: 78
49101118 CGAATGATAT
* * *
49101128 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
*
49101192 TGTGCGAGTTACTAATT
62 TGTGCGAGTTACTAATA
* * *
49101209 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
*
49101272 GTGTGAGTTACT-ATAA
63 GTGCGAGTTACTAAT-A
* * *
49101288 CCGGGCTATGTCCCGAAGGCATTTGAGTGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTAGCTATATCCGGTT-AAGTCCGAAGG
49101346 TATGTGATTC
Statistics
Matches: 115, Mismatches: 14, Indels: 18
0.78 0.10 0.12
Matches are distributed among these distances:
78 3 0.03
79 58 0.50
80 44 0.38
81 10 0.09
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATA
Found at i:49109615 original size:30 final size:29
Alignment explanation
Indices: 49109581--49109644 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
49109571 ATGAATCGGA
49109581 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATTT-AACT
*
49109611 AGCTTTGGCACTAAGTGTGTGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
49109640 AGCTT
1 AGCTT
49109645 CAGCTACTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:49111406 original size:19 final size:19
Alignment explanation
Indices: 49111382--49111420 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
49111372 ATAAGAGTGT
49111382 TTGATGAATTATCCCTGAG
1 TTGATGAATTATCCCTGAG
49111401 TTGATGAATTATCCCTGAG
1 TTGATGAATTATCCCTGAG
49111420 T
1 T
49111421 CCTGAAGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (19 bp):
TTGATGAATTATCCCTGAG
Found at i:49118234 original size:20 final size:20
Alignment explanation
Indices: 49118209--49118247 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
49118199 ATGGACTAAA
* *
49118209 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
49118229 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTCTAAAATTT
49118248 TACAAACACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:49132417 original size:19 final size:19
Alignment explanation
Indices: 49132389--49132431 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
49132379 TGAAAAATAA
49132389 TTTTTAGAAAATGATTTAT
1 TTTTTAGAAAATGATTTAT
* *
49132408 TTTTTTGAAAATGTTTTAT
1 TTTTTAGAAAATGATTTAT
49132427 TTTTT
1 TTTTT
49132432 CTGGTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (19 bp):
TTTTTAGAAAATGATTTAT
Found at i:49133876 original size:32 final size:32
Alignment explanation
Indices: 49133830--49133909 Score: 99
Period size: 32 Copynumber: 2.5 Consensus size: 32
49133820 TGTCAATCAT
*
49133830 TTCAATATCCAACAAGCTT-AAAACATAATAAA
1 TTCAATATCCAACAA-ATTCAAAACATAATAAA
* * *
49133862 TTCAATATCTAACAAATTCAAGACATAATAAT
1 TTCAATATCCAACAAATTCAAAACATAATAAA
*
49133894 TTCAAAATCCAACAAA
1 TTCAATATCCAACAAA
49133910 CTAAATTCAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 2 0.05
32 39 0.95
ACGTcount: A:0.53, C:0.19, G:0.03, T:0.26
Consensus pattern (32 bp):
TTCAATATCCAACAAATTCAAAACATAATAAA
Found at i:49137816 original size:37 final size:37
Alignment explanation
Indices: 49137757--49137865 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
49137747 AGCTCAGACG
* *
49137757 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
49137794 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
49137831 TAATCTCCAGACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
49137866 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:49138069 original size:50 final size:50
Alignment explanation
Indices: 49138014--49138111 Score: 162
Period size: 50 Copynumber: 2.0 Consensus size: 50
49138004 CATCGCCTAC
49138014 ATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATAT
* *
49138064 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTCATAT
1 ATATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
49138112 TCACCACATT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
49 2 0.04
50 43 0.96
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.37
Consensus pattern (50 bp):
ATATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:49138168 original size:47 final size:47
Alignment explanation
Indices: 49138069--49138261 Score: 246
Period size: 47 Copynumber: 4.1 Consensus size: 47
49138059 TATATATATT
* * * *
49138069 TCACATTGACCATTCGGCTTTA-C-CACATATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTCACATTCA
*
49138115 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
49138162 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * * ***
49138209 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
49138256 TCACAT
1 TCACAT
49138262 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
46 19 0.14
47 103 0.77
48 11 0.08
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:49138188 original size:22 final size:22
Alignment explanation
Indices: 49138161--49138232 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
49138151 GCTCACATTC
49138161 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
49138183 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
49138207 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
49138230 ATC
1 ATC
49138233 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:49157989 original size:22 final size:22
Alignment explanation
Indices: 49157961--49158005 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
49157951 CGGAGTCGTC
49157961 GGGGCATACTGAGGAATCGGAA
1 GGGGCATACTGAGGAATCGGAA
49157983 GGGGCATACTGAGGAATCGGAA
1 GGGGCATACTGAGGAATCGGAA
49158005 G
1 G
49158006 AGGTGGGGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.13, G:0.42, T:0.13
Consensus pattern (22 bp):
GGGGCATACTGAGGAATCGGAA
Found at i:49159705 original size:44 final size:48
Alignment explanation
Indices: 49159643--49159763 Score: 117
Period size: 48 Copynumber: 2.6 Consensus size: 48
49159633 CATGCTAATG
* * *
49159643 CATGTCCTATACATGTCTTACACTAGCACAACTCT-T-A-GCCG-ATA
1 CATGTCCCAGACACGTCTTACACTAGCACAACTCTGTCAGGCCGAATA
* * * * *
49159687 CGTGTCCCAGACACGTCTTACACTGGC-TATCTCTGTCGAGGCCGAATG
1 CATGTCCCAGACACGTCTTACACTAGCACAACTCTGTC-AGGCCGAATA
*
49159735 CATGTCCCAGACATGTCTTACACTAGCAC
1 CATGTCCCAGACACGTCTTACACTAGCAC
49159764 TCATCTCTAT
Statistics
Matches: 59, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
43 5 0.08
44 23 0.39
46 1 0.02
47 4 0.07
48 26 0.44
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (48 bp):
CATGTCCCAGACACGTCTTACACTAGCACAACTCTGTCAGGCCGAATA
Found at i:49159746 original size:48 final size:49
Alignment explanation
Indices: 49159689--49159813 Score: 141
Period size: 48 Copynumber: 2.6 Consensus size: 49
49159679 AGCCGATACG
*
49159689 TGTCCCAGACACGTCTTACACTGGCTATCTC-TGTCGAGGCCGAATG-CA
1 TGTCCCAGACACGTCTTACACTGGCTATCTCATCTCGAGGCC-AATGCCA
* * * *
49159737 TGTCCCAGACATGTCTTACACTAGC-A-CTCATCTCTATGCCAATGCCA
1 TGTCCCAGACACGTCTTACACTGGCTATCTCATCTCGAGGCCAATGCCA
* *
49159784 TGTCCCAGACATGGTCTTACACTGACTATC
1 TGTCCCAGACA-CGTCTTACACTGGCTATC
49159814 ATAGTGTGGC
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
46 7 0.11
47 21 0.33
48 34 0.53
49 1 0.02
50 1 0.02
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (49 bp):
TGTCCCAGACACGTCTTACACTGGCTATCTCATCTCGAGGCCAATGCCA
Found at i:49159846 original size:94 final size:95
Alignment explanation
Indices: 49159585--49159946 Score: 352
Period size: 94 Copynumber: 3.9 Consensus size: 95
49159575 TGGGATATAT
* *
49159585 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCAT-GCTAATGCATGT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGT-CG--TGGCTGATGCATGT
* *
49159648 CCTATACATGTCTTACACTAGCA--CAACTCT-
63 CCCAAACATGTCTTACACTAGCACTCAACTCTA
* * * * * *
49159678 TAGCCGAT-ACGTGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGAGGCCGAATGCATGT
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGTCGTGGCTG-ATGCATGT
* *
49159740 CCCAGACATGTCTTACACTAGCACTCATCTCTA
63 CCCAAACATGTCTTACACTAGCACTCAACTCTA
* * *
49159773 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATAGT-GTGGCTGGTGCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTCGTGGCTGATGCATGTCCC
* ** **
49159837 AAACATGTCTTACACTAGCCCTCGCCTGGA
66 AAACATGTCTTACACTAGCACTCAACTCTA
* * * *
49159867 TGCCGATGCCATGTCCCAAACATGGTCTTAC-CATGGCTCTCATAAT-GTGGCTGAAGCATGT-C
1 TGCCGATGCCATGTCCCAGACATGGTCTTACAC-TGGCTATCATAGTCGTGGCTGATGCATGTCC
49159929 CAAGACATGTCTTACACT
65 CAA-ACATGTCTTACACT
49159947 GGCGCACAAA
Statistics
Matches: 223, Mismatches: 33, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
91 3 0.01
92 47 0.21
93 19 0.09
94 117 0.52
95 18 0.08
96 18 0.08
97 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (95 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTCGTGGCTGATGCATGTCCC
AAACATGTCTTACACTAGCACTCAACTCTA
Found at i:49160832 original size:37 final size:37
Alignment explanation
Indices: 49160791--49160868 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
49160781 GAGAAGAAGG
49160791 AAATGATAGCTAGGCTTTTAGGCATTATTTTATCACC
1 AAATGATAGCTAGGCTTTTAGGCATTATTTTATCACC
49160828 AAATGATAGCTAGGCTTTTAGGCATTATTTTATCACC
1 AAATGATAGCTAGGCTTTTAGGCATTATTTTATCACC
49160865 AAAT
1 AAAT
49160869 CATGACATCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (37 bp):
AAATGATAGCTAGGCTTTTAGGCATTATTTTATCACC
Found at i:49164175 original size:16 final size:16
Alignment explanation
Indices: 49164154--49164185 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
49164144 AAATTGTTAG
49164154 ATTTTAAGCTTAGAAT
1 ATTTTAAGCTTAGAAT
49164170 ATTTTAAGCTTAGAAT
1 ATTTTAAGCTTAGAAT
49164186 TGAAAAGGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (16 bp):
ATTTTAAGCTTAGAAT
Found at i:49164869 original size:25 final size:25
Alignment explanation
Indices: 49164835--49164885 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
49164825 TTAGTTTTTG
49164835 AGATAGAAGATTAAATTGAATAAAA
1 AGATAGAAGATTAAATTGAATAAAA
49164860 AGATAGAAGATTAAATTGAATAAAA
1 AGATAGAAGATTAAATTGAATAAAA
49164885 A
1 A
49164886 TTGAAAATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.24
Consensus pattern (25 bp):
AGATAGAAGATTAAATTGAATAAAA
Found at i:49165000 original size:21 final size:21
Alignment explanation
Indices: 49164971--49165011 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
49164961 TGATTATTTG
49164971 ATTGATGAATTGAATATAATA
1 ATTGATGAATTGAATATAATA
* *
49164992 ATTGGTGAATTGACTATAAT
1 ATTGATGAATTGAATATAAT
49165012 TGAAAATTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.39
Consensus pattern (21 bp):
ATTGATGAATTGAATATAATA
Found at i:49166006 original size:20 final size:20
Alignment explanation
Indices: 49165952--49165994 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
49165942 TTTTAAAATA
49165952 AAGTGAAAATGATTTCAACC
1 AAGTGAAAATGATTTCAACC
*
49165972 AAGTGAAAATGATTTCAATC
1 AAGTGAAAATGATTTCAACC
49165992 AAG
1 AAG
49165995 CTAAAATCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.26
Consensus pattern (20 bp):
AAGTGAAAATGATTTCAACC
Found at i:49173205 original size:53 final size:52
Alignment explanation
Indices: 49173053--49173285 Score: 172
Period size: 55 Copynumber: 4.4 Consensus size: 52
49173043 CCATGTAAGA
* * * * * * *
49173053 CCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATATCATGAAATACCATA
1 CCAAGACATGGCAA-TGGTAA-G-TTATAAGGCAAGGATACCATGTAAGACCATG
* * * * *
49173108 TCAAGACATGGCATTGATAAGTCACTATAAGGCAAAGG-TCCCATGTAAGACCGTG
1 CCAAGACATGGCAATGGTAAGT---TATAAGGC-AAGGATACCATGTAAGACCATG
* *
49173163 CCAAGGCATGG-AATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCATG
1 CCAAGACATGGCAA-TGGTAAGTT-ATAAGGCAAGGATACCATGTAAGACCATG
*
49173216 TCAAGACATGGCAATGGTAAGTT-TCAA---AAGGATACCATGTAAGACCATG
1 CCAAGACATGGCAATGGTAAGTTAT-AAGGCAAGGATACCATGTAAGACCATG
* * *
49173265 ACAAGTCATGCCAATGGTAAG
1 CCAAGACATGGCAATGGTAAG
49173286 GTACCTGTGT
Statistics
Matches: 144, Mismatches: 25, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
49 40 0.28
51 1 0.01
52 8 0.06
53 40 0.28
54 8 0.06
55 43 0.30
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (52 bp):
CCAAGACATGGCAATGGTAAGTTATAAGGCAAGGATACCATGTAAGACCATG
Found at i:49173380 original size:23 final size:24
Alignment explanation
Indices: 49173354--49173398 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
49173344 AAGGTAAGGT
*
49173354 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
49173377 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
49173399 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:49181634 original size:38 final size:38
Alignment explanation
Indices: 49181578--49181654 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
49181568 TTAGCCTCGG
**
49181578 CGGATACACTCCCGAGCATATTTGCTGAGCTGGACAAA
1 CGGATACACTCCAAAGCATATTTGCTGAGCTGGACAAA
*
49181616 CGGATACACTCGAAAGCATATTTGCTGAGCTGGACAAA
1 CGGATACACTCCAAAGCATATTTGCTGAGCTGGACAAA
49181654 C
1 C
49181655 TCTCTTTCGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (38 bp):
CGGATACACTCCAAAGCATATTTGCTGAGCTGGACAAA
Found at i:49182084 original size:8 final size:9
Alignment explanation
Indices: 49182059--49182086 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
49182049 GTCGAGGATT
49182059 TGGAGGGGG
1 TGGAGGGGG
49182068 TGGAGGGGG
1 TGGAGGGGG
49182077 TGGAGGGGG
1 TGGAGGGGG
49182086 T
1 T
49182087 TGAGCATTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.75, T:0.14
Consensus pattern (9 bp):
TGGAGGGGG
Found at i:49182286 original size:43 final size:43
Alignment explanation
Indices: 49182225--49182306 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
49182215 AGGAGCTGAT
*
49182225 GCGTTACTTTCAACATCATCCTCCACTGCTCTATTGGGAAGGC
1 GCGTTACTTTCAACATCATCCACCACTGCTCTATTGGGAAGGC
49182268 GCGTTACTTTCAACATCATCCACCACTGCTCTATTGGGA
1 GCGTTACTTTCAACATCATCCACCACTGCTCTATTGGGA
49182307 TTCATTTACT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.30
Consensus pattern (43 bp):
GCGTTACTTTCAACATCATCCACCACTGCTCTATTGGGAAGGC
Found at i:49183855 original size:20 final size:20
Alignment explanation
Indices: 49183832--49183875 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
49183822 ACACACACCT
49183832 GTGTGGCTTGGGACACGCCC
1 GTGTGGCTTGGGACACGCCC
49183852 GTGTGGCTTGGGACACGCCC
1 GTGTGGCTTGGGACACGCCC
49183872 GTGT
1 GTGT
49183876 CCTTAGCCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.09, C:0.27, G:0.41, T:0.23
Consensus pattern (20 bp):
GTGTGGCTTGGGACACGCCC
Found at i:49189289 original size:48 final size:48
Alignment explanation
Indices: 49189219--49189404 Score: 248
Period size: 48 Copynumber: 3.9 Consensus size: 48
49189209 TAGGGTGATG
** * * **
49189219 TGTGATCTGATGTAAAACCATGTCTTGGATATGTAATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTTGGACATGGCATTGGCATCGATA
*
49189267 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTTGGACATGGCATTGGCATCGATA
*
49189315 TGTGATCCCATGTAAGACCATGTC-TGGTACATGGCATTGGCATCGAAA
1 TGTGATCCCATGTAAGACCATGTCTTGG-ACATGGCATTGGCATCGATA
* * * *
49189363 TGTGATCCCGTGTAAGACCATATCTAGGATATGGCATTGGCA
1 TGTGATCCCATGTAAGACCATGTCTTGGACATGGCATTGGCA
49189405 CCTTACTATG
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
47 2 0.02
48 119 0.97
49 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTTGGACATGGCATTGGCATCGATA
Found at i:49192480 original size:21 final size:22
Alignment explanation
Indices: 49192450--49192493 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
49192440 ATGAACTCAG
49192450 TTTTAGAAGA-AATATCAGATTA
1 TTTTAGAAGATAATAT-AGATTA
*
49192472 TTTTA-AAGATTATATAGATTA
1 TTTTAGAAGATAATATAGATTA
49192493 T
1 T
49192494 GCAATGTCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.43
Consensus pattern (22 bp):
TTTTAGAAGATAATATAGATTA
Found at i:49197556 original size:28 final size:28
Alignment explanation
Indices: 49197515--49197569 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
49197505 GCCTTCCTGC
* *
49197515 ATAAGCACATAACCCAATCTATTCAAAG
1 ATAAGCACACAACCCAATCCATTCAAAG
49197543 ATAAGCACACAACCCAATCCATTCAAA
1 ATAAGCACACAACCCAATCCATTCAAA
49197570 AATGCATCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.47, C:0.29, G:0.05, T:0.18
Consensus pattern (28 bp):
ATAAGCACACAACCCAATCCATTCAAAG
Found at i:49200783 original size:9 final size:9
Alignment explanation
Indices: 49200769--49200794 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
49200759 ATGAATAGAT
49200769 GCTCAAAAG
1 GCTCAAAAG
49200778 GCTCAAAAG
1 GCTCAAAAG
49200787 GCTCAAAA
1 GCTCAAAA
49200795 ATCTCACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.23, G:0.19, T:0.12
Consensus pattern (9 bp):
GCTCAAAAG
Found at i:49201078 original size:58 final size:58
Alignment explanation
Indices: 49201008--49201123 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
49200998 CAATTAAAAT
*
49201008 TTATCCTAAATATGATATGAGAGTTTTTCATGAGAACAAGGTGATTGTTAATGAATAC
1 TTATCCTAAATATGATATGAGAGTTTTTCATGAGAACAAGGTGATTATTAATGAATAC
49201066 TTATCCTAAATATGATATGAGAGTTTTTCATGAGAACAAGGTGATTATTAATGAATAC
1 TTATCCTAAATATGATATGAGAGTTTTTCATGAGAACAAGGTGATTATTAATGAATAC
49201124 CCCCCACACT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.36
Consensus pattern (58 bp):
TTATCCTAAATATGATATGAGAGTTTTTCATGAGAACAAGGTGATTATTAATGAATAC
Found at i:49206745 original size:20 final size:20
Alignment explanation
Indices: 49206722--49206760 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
49206712 TAAACATGGT
49206722 ATGTATGATACGCACATGAC
1 ATGTATGATACGCACATGAC
*
49206742 ATGTATGATATGCACATGA
1 ATGTATGATACGCACATGA
49206761 TATGCACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (20 bp):
ATGTATGATACGCACATGAC
Found at i:49206762 original size:11 final size:11
Alignment explanation
Indices: 49206746--49206772 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
49206736 CATGACATGT
49206746 ATGATATGCAC
1 ATGATATGCAC
49206757 ATGATATGCAC
1 ATGATATGCAC
49206768 ATGAT
1 ATGAT
49206773 GTATTCATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:49206966 original size:24 final size:24
Alignment explanation
Indices: 49206827--49206995 Score: 239
Period size: 24 Copynumber: 7.0 Consensus size: 24
49206817 GTGCAAAAAC
*
49206827 GCTTATGCCCCAGTTATCAAAAGG
1 GCTTATGCCCCAGTTATTAAAAGG
49206851 GCTTATGCCCCAGTTATTAAAAAAGG
1 GCTTATGCCCCAGTTATT--AAAAGG
*
49206877 GCTTATGCCCCAGTTATCAAAAGG
1 GCTTATGCCCCAGTTATTAAAAGG
* * *
49206901 GCTGATGCCTCAGTTATTAAAAGA
1 GCTTATGCCCCAGTTATTAAAAGG
49206925 GCTTATGCCCCAGTTATTAAAAGG
1 GCTTATGCCCCAGTTATTAAAAGG
**
49206949 GCTTATGCCCCAGTTATTTTAAGG
1 GCTTATGCCCCAGTTATTAAAAGG
* *
49206973 GATTTTGCCCCAGTTATTAAAAG
1 GCTTATGCCCCAGTTATTAAAAG
49206996 ACGCTAGGCC
Statistics
Matches: 128, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
24 105 0.82
26 23 0.18
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (24 bp):
GCTTATGCCCCAGTTATTAAAAGG
Found at i:49206988 original size:72 final size:73
Alignment explanation
Indices: 49206831--49207014 Score: 237
Period size: 72 Copynumber: 2.5 Consensus size: 73
49206821 AAAAACGCTT
* *
49206831 ATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTATGCCCCAGTTATCA
1 ATGCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATT-AAAAAGGGCTTATGCCCCAGTTATCA
*
49206896 AAAGGGCTG
65 AAAGGGATG
* ***
49206905 ATGCCTCAGTTATTAAAAGAGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATTTT
1 ATGCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTATCAA
*
49206969 AAGGGATT
66 AAGGGATG
* *
49206977 TTGCCCCAGTTATTAAAAGACGC-TAGGCCTCCAGTTAT
1 ATGCCCCAGTTATTAAAAGA-GCTTATGCC-CCAGTTAT
49207015 ATGATAAAGC
Statistics
Matches: 97, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
72 52 0.54
73 10 0.10
74 35 0.36
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (73 bp):
ATGCCCCAGTTATTAAAAGAGCTTATGCCCCAGTTATTAAAAAGGGCTTATGCCCCAGTTATCAA
AAGGGATG
Found at i:49209787 original size:21 final size:21
Alignment explanation
Indices: 49209762--49209802 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
49209752 ATGTATCTGA
49209762 GGCTTTAGATGTGCTTCCTGG
1 GGCTTTAGATGTGCTTCCTGG
*
49209783 GGCTTTGGATGTGCTTCCTG
1 GGCTTTAGATGTGCTTCCTG
49209803 AGGAGACTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.20, G:0.34, T:0.39
Consensus pattern (21 bp):
GGCTTTAGATGTGCTTCCTGG
Found at i:49213601 original size:20 final size:20
Alignment explanation
Indices: 49213535--49213601 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
49213525 ATTTTGATAA
* *
49213535 ACATGGTATGTATGATACGC
1 ACATGATATGTATGATATGC
*
49213555 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
49213575 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
49213595 ACATGAT
1 ACATGAT
49213602 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:49213767 original size:25 final size:24
Alignment explanation
Indices: 49213650--49213769 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
49213640 GAGGAAGTGC
*
49213650 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
49213674 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
49213698 AAAAGGGCTTATGCCTCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
49213722 AAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
49213746 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
49213770 ATAATGAAGC
Statistics
Matches: 86, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
24 76 0.88
25 10 0.12
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:49221703 original size:47 final size:47
Alignment explanation
Indices: 49220868--49221695 Score: 1620
Period size: 47 Copynumber: 17.6 Consensus size: 47
49220858 TCGGGACTTA
*
49220868 TCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49220915 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49220962 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49221009 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49221056 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49221103 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49221150 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49221197 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49221244 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49221291 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49221338 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49221385 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49221432 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49221479 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49221526 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
49221573 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
* *
49221620 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCTTA
1 TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
*
49221667 TCACATATATACACTTTCACATTCATCAC
1 TCACATATATACACTTTCACATCCATCAC
49221696 ATCGGCCATT
Statistics
Matches: 777, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 777 1.00
ACGTcount: A:0.24, C:0.36, G:0.12, T:0.28
Consensus pattern (47 bp):
TCACATATATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
Found at i:49221712 original size:27 final size:27
Alignment explanation
Indices: 49221679--49221863 Score: 254
Period size: 27 Copynumber: 7.0 Consensus size: 27
49221669 ACATATATAC
49221679 ACTTTCACATTCATCACATCGGCCATT
1 ACTTTCACATTCATCACATCGGCCATT
49221706 ACTTTCACATTCATCACATCGGCCATT
1 ACTTTCACATTCATCACATCGGCCATT
49221733 ACTTTCACATTCATCACATCGGCCATT
1 ACTTTCACATTCATCACATCGGCCATT
49221760 ACTTTCACATTCATCACATCGGCCATT
1 ACTTTCACATTCATCACATCGGCCATT
** ***** **
49221787 A--GGC-C-TT-ATCACATATATAAAC
1 ACTTTCACATTCATCACATCGGCCATT
49221809 ACTTTCACATTCATCACATCGGCCATT
1 ACTTTCACATTCATCACATCGGCCATT
49221836 ACTTTCACATTCATCACATCGGCCATT
1 ACTTTCACATTCATCACATCGGCCATT
49221863 A
1 A
49221864 GGCCTTATCA
Statistics
Matches: 135, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
22 9 0.07
23 2 0.01
24 2 0.01
25 2 0.01
26 2 0.01
27 118 0.87
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.32
Consensus pattern (27 bp):
ACTTTCACATTCATCACATCGGCCATT
Found at i:49221829 original size:76 final size:76
Alignment explanation
Indices: 49221733--49221895 Score: 317
Period size: 76 Copynumber: 2.1 Consensus size: 76
49221723 ATCGGCCATT
49221733 ACTTTCACATTCATCACATCGGCCATTACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 ACTTTCACATTCATCACATCGGCCATTACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
49221798 CATATATAAAC
66 CATATATAAAC
49221809 ACTTTCACATTCATCACATCGGCCATTACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 ACTTTCACATTCATCACATCGGCCATTACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
49221874 CATATATATAC
66 CATATATAAAC
49221885 ACTTTCACATT
1 ACTTTCACATT
49221896 TATTCAAATA
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 86 1.00
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.33
Consensus pattern (76 bp):
ACTTTCACATTCATCACATCGGCCATTACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATATATAAAC
Found at i:49223406 original size:13 final size:13
Alignment explanation
Indices: 49223388--49223412 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49223378 TACTAAATTT
49223388 TCATGGATTCAAA
1 TCATGGATTCAAA
49223401 TCATGGATTCAA
1 TCATGGATTCAA
49223413 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:49242333 original size:43 final size:42
Alignment explanation
Indices: 49242258--49242361 Score: 102
Period size: 43 Copynumber: 2.5 Consensus size: 42
49242248 ACATAGTAAT
* * * * **
49242258 ATACCAATGCCATATCCCAGTTATGGCTTTACATGGGATCTC
1 ATACCGATGCCATAGCCCAGCTATGGCTTTACACGAAATCTC
*
49242300 ATATCGATGCCAATAGCCCAGCTATGG-TCTTACACGAAATCTC
1 ATACCGATGCC-ATAGCCCAGCTATGGCT-TTACACGAAATCTC
* *
49242343 ATACCGATGTCATATCCCA
1 ATACCGATGCCATAGCCCA
49242362 TATATTGTCT
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
42 17 0.34
43 33 0.66
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (42 bp):
ATACCGATGCCATAGCCCAGCTATGGCTTTACACGAAATCTC
Found at i:49250562 original size:27 final size:27
Alignment explanation
Indices: 49250531--49250707 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
49250521 TAAATTGTAC
49250531 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
49250558 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49250584 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
49250612 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
49250640 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49250667 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
49250694 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
49250708 AGACTCAATA
Statistics
Matches: 128, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Done.