Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 149 of 284
Found at i:49880228 original size:31 final size:29
Alignment explanation
Indices: 49880161--49880228 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 29
49880151 AAATAAAAAT
*
49880161 TTCATGTATAAAATTACACAAAATCAAAG
1 TTCATGTATAAAATTACACAAAACCAAAG
* *
49880190 --CATGTATAAAATTGCACATTAAACCATAG
1 TTCATGTATAAAATTACACA--AAACCAAAG
49880219 TTCATGTATA
1 TTCATGTATA
49880229 GTTTTGAGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
27 17 0.53
29 7 0.22
31 8 0.25
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.31
Consensus pattern (29 bp):
TTCATGTATAAAATTACACAAAACCAAAG
Found at i:49881213 original size:20 final size:20
Alignment explanation
Indices: 49881163--49881213 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
49881153 AATTTAGTTT
*
49881163 TTATTT-TTAATTTTTTGAA
1 TTATTTATTAATTTTTTAAA
*
49881182 -TATTTTAATAATTTTTTAAA
1 TTA-TTTATTAATTTTTTAAA
49881202 TTATTTATTAAT
1 TTATTTATTAAT
49881214 GTGCATATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 2 0.08
19 3 0.12
20 19 0.73
21 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
TTATTTATTAATTTTTTAAA
Found at i:49882473 original size:13 final size:13
Alignment explanation
Indices: 49882431--49882473 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
49882421 TAAAAAATAC
*
49882431 AAAAACTAATATT
1 AAAAACAAATATT
49882444 AAAATAACAAA-ATT
1 -AAA-AACAAATATT
49882458 AAAAACAAATATT
1 AAAAACAAATATT
49882471 AAA
1 AAA
49882474 TCCAAAACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 6 0.23
13 9 0.35
14 6 0.23
15 5 0.19
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAAACAAATATT
Found at i:49883598 original size:29 final size:29
Alignment explanation
Indices: 49883548--49883628 Score: 83
Period size: 29 Copynumber: 2.8 Consensus size: 29
49883538 AAAAAATTTA
* * *
49883548 AAAAATATTTTTTTATAGTTTTTATACTTT
1 AAAAATAATTTTATA-ATTTTTTATACTTT
* * *
49883578 -TAAATAATTTTAGTAATTTTTAATAGTTT
1 AAAAATAATTTTA-TAATTTTTTATACTTT
49883607 AAAAATAATTTTATAATTTTTT
1 AAAAATAATTTTATAATTTTTT
49883629 GAATTTCTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
29 28 0.68
30 13 0.32
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (29 bp):
AAAAATAATTTTATAATTTTTTATACTTT
Found at i:49891276 original size:56 final size:57
Alignment explanation
Indices: 49891187--49891296 Score: 204
Period size: 56 Copynumber: 1.9 Consensus size: 57
49891177 AAGCAACGCC
49891187 ATAGTATCCCTATTATGGGCCTACGAGACCCAAAACATGCATTAAGAATGGTCCGTG
1 ATAGTATCCCTATTATGGGCCTACGAGACCCAAAACATGCATTAAGAATGGTCCGTG
*
49891244 ATAGTGTCCCTATTAT-GGCCTACGAGACCCAAAACATGCATTAAGAATGGTCC
1 ATAGTATCCCTATTATGGGCCTACGAGACCCAAAACATGCATTAAGAATGGTCC
49891297 AGGACTAACC
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
56 37 0.71
57 15 0.29
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.25
Consensus pattern (57 bp):
ATAGTATCCCTATTATGGGCCTACGAGACCCAAAACATGCATTAAGAATGGTCCGTG
Found at i:49903903 original size:41 final size:40
Alignment explanation
Indices: 49903854--49903931 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 40
49903844 AATTATGGGT
*
49903854 ACTTGTGTGCGAAATTGAGATAACTTCGGTTATATATTGC
1 ACTTGTGTGCGAAATTGAGATAACTTCGGCTATATATTGC
* *
49903894 ACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATAT
1 ACTT-GTGTGCGAAATTGAGATAACTTCGGCTATATAT
49903932 ATACAGTGGC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 4 0.12
41 30 0.88
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (40 bp):
ACTTGTGTGCGAAATTGAGATAACTTCGGCTATATATTGC
Found at i:49905442 original size:58 final size:58
Alignment explanation
Indices: 49905352--49905469 Score: 218
Period size: 58 Copynumber: 2.0 Consensus size: 58
49905342 TTTTATGCAA
*
49905352 AAATTTTCTAAGTGCTGAAAAATTTCCTAAGTTATCGGTTTAGTCCTGAACCACTTCC
1 AAATTTTCTAAGTGCTGAAAAATTTCCTAAGTTATCGGTTTAGTCATGAACCACTTCC
*
49905410 AAATTTTCTAAGTGTTGAAAAATTTCCTAAGTTATCGGTTTAGTCATGAACCACTTCC
1 AAATTTTCTAAGTGCTGAAAAATTTCCTAAGTTATCGGTTTAGTCATGAACCACTTCC
49905468 AA
1 AA
49905470 TGCATGCTTT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (58 bp):
AAATTTTCTAAGTGCTGAAAAATTTCCTAAGTTATCGGTTTAGTCATGAACCACTTCC
Found at i:49906759 original size:20 final size:20
Alignment explanation
Indices: 49906728--49906779 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
49906718 GAAAAAACAT
*
49906728 TTAAAATGATTTTAACATGA
1 TTAAAATCATTTTAACATGA
* * * *
49906748 TTGAAATCATTTTGACTTGG
1 TTAAAATCATTTTAACATGA
49906768 TTAAAATCATTT
1 TTAAAATCATTT
49906780 GCACTTAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.44
Consensus pattern (20 bp):
TTAAAATCATTTTAACATGA
Found at i:49906811 original size:29 final size:29
Alignment explanation
Indices: 49906778--49906837 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
49906768 TTAAAATCAT
49906778 TTGCACTTAATTTTAAAATTGTTTCAAAG
1 TTGCACTTAATTTTAAAATTGTTTCAAAG
49906807 TTGCACTTAATTTTAAAATTGTTTCAAAG
1 TTGCACTTAATTTTAAAATTGTTTCAAAG
49906836 TT
1 TT
49906838 TTATCTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.47
Consensus pattern (29 bp):
TTGCACTTAATTTTAAAATTGTTTCAAAG
Found at i:49910520 original size:20 final size:22
Alignment explanation
Indices: 49910478--49910520 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 22
49910468 AAGACACATT
*
49910478 TAAAATAATATAATTTACTTTA
1 TAAAATAATATAATTTACGTTA
*
49910500 TAAAATAA-AT-ATTTTCGTTA
1 TAAAATAATATAATTTACGTTA
49910520 T
1 T
49910521 TACTGAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 9 0.47
21 2 0.11
22 8 0.42
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (22 bp):
TAAAATAATATAATTTACGTTA
Found at i:49911396 original size:16 final size:18
Alignment explanation
Indices: 49911332--49911397 Score: 58
Period size: 18 Copynumber: 4.0 Consensus size: 18
49911322 AATATAATGG
49911332 TAATAAAATATATAAT-TA
1 TAAT-AAATATATAATATA
49911350 T--TAAAT-TA-AATAT-
1 TAATAAATATATAATATA
49911363 TAATAAATATATATATATA
1 TAATAAATATATA-ATATA
49911382 TAA-AAATA-ATAATATA
1 TAATAAATATATAATATA
49911398 ATGAGTTTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 16
0.72 0.00 0.28
Matches are distributed among these distances:
13 4 0.10
14 3 0.07
15 9 0.22
16 8 0.20
17 4 0.10
18 10 0.24
19 3 0.07
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TAATAAATATATAATATA
Found at i:49913503 original size:27 final size:24
Alignment explanation
Indices: 49913470--49913529 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 24
49913460 ATAATTAAAT
*
49913470 CTAAATTTTAAAATCGAAAAAATAAGA
1 CTAAATTTTAAAAAC-AAAAAA-AA-A
49913497 CTAAATTTTTAAAAACAAAAAAAAA
1 CTAAA-TTTTAAAAACAAAAAAAAA
49913522 CTAAATTT
1 CTAAATTT
49913530 CAAATACATA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
24 3 0.10
25 6 0.19
26 2 0.06
27 11 0.35
28 9 0.29
ACGTcount: A:0.60, C:0.08, G:0.03, T:0.28
Consensus pattern (24 bp):
CTAAATTTTAAAAACAAAAAAAAA
Found at i:49920139 original size:21 final size:20
Alignment explanation
Indices: 49920087--49920136 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
49920077 GTAGAGATCT
*
49920087 CACACGTCCGTGTGGCTAAGG
1 CACACG-CCGTGTGGCCAAGG
* *
49920108 GACATCGCCGTGTGTCCAAGG
1 CACA-CGCCGTGTGGCCAAGG
49920129 CACACGCC
1 CACACGCC
49920137 CGTTTGAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 4 0.17
21 18 0.75
22 2 0.08
ACGTcount: A:0.20, C:0.34, G:0.30, T:0.16
Consensus pattern (20 bp):
CACACGCCGTGTGGCCAAGG
Found at i:49927124 original size:13 final size:14
Alignment explanation
Indices: 49927103--49927136 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
49927093 CTGTTCACAG
*
49927103 TTTTCTTTTCTTC-
1 TTTTTTTTTCTTCA
49927116 TTTTTTTTTCTTCA
1 TTTTTTTTTCTTCA
49927130 TTTTTTT
1 TTTTTTT
49927137 CTATTATTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTTTTTCTTCA
Found at i:49927864 original size:49 final size:49
Alignment explanation
Indices: 49927811--49927933 Score: 133
Period size: 49 Copynumber: 2.5 Consensus size: 49
49927801 CACACGAGCA
* * * *
49927811 TGTGCGATTACACGGGCAAAAT-AGGTAGGCCGTGTGGGGCACACAGGTG
1 TGTGCGATTACACAGGC-AAATCAGGGAGGACGTGTAGGGCACACAGGTG
* * * **
49927860 TGTGCGATTGCATAGGCAAATCAGGGAGGACGTGTAGGGTACATGGGTG
1 TGTGCGATTACACAGGCAAATCAGGGAGGACGTGTAGGGCACACAGGTG
49927909 TGTGCGATTACACTA-GCAAATCAGG
1 TGTGCGATTACAC-AGGCAAATCAGG
49927934 TAGACTGTGT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
48 4 0.07
49 56 0.92
50 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.37, T:0.21
Consensus pattern (49 bp):
TGTGCGATTACACAGGCAAATCAGGGAGGACGTGTAGGGCACACAGGTG
Found at i:49927944 original size:49 final size:48
Alignment explanation
Indices: 49927811--49927953 Score: 128
Period size: 49 Copynumber: 2.9 Consensus size: 48
49927801 CACACGAGCA
** * *
49927811 TGTGCGATTACACGGGCAAAAT-AGGTAGGCCGTGTGGGGCACACAGGTG
1 TGTGCGATTACACTAGC-AAATCAGGTA-GACGTGTAGGGCACACAGGTG
* * * **
49927860 TGTGCGATTGCA-TAGGCAAATCAGGGAGGACGTGTAGGGTACATGGGTG
1 TGTGCGATTACACTA-GCAAATCAGGTA-GACGTGTAGGGCACACAGGTG
* *
49927909 TGTGCGATTACACTAGCAAATCAGGTAGACTGTGTAAGACACACA
1 TGTGCGATTACACTAGCAAATCAGGTAGAC-GTGTAGGGCACACA
49927954 AGCTAGCCAT
Statistics
Matches: 74, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
48 7 0.09
49 65 0.88
50 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.34, T:0.21
Consensus pattern (48 bp):
TGTGCGATTACACTAGCAAATCAGGTAGACGTGTAGGGCACACAGGTG
Found at i:49931076 original size:21 final size:23
Alignment explanation
Indices: 49931038--49931081 Score: 74
Period size: 21 Copynumber: 2.0 Consensus size: 23
49931028 CATGAGAATG
49931038 TCAATGCAGAGTTTTTTCAAAAA
1 TCAATGCAGAGTTTTTTCAAAAA
49931061 TCAATGCA-AG-TTTTTCAAAAA
1 TCAATGCAGAGTTTTTTCAAAAA
49931082 CATTCCTACC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 11 0.52
22 2 0.10
23 8 0.38
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (23 bp):
TCAATGCAGAGTTTTTTCAAAAA
Found at i:49932314 original size:25 final size:23
Alignment explanation
Indices: 49932272--49932322 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 23
49932262 TTGGTGGTAG
*
49932272 AGAATGATATCAAGTGGTGGTGAAA
1 AGAATGAAATCAAGTGGT-GT-AAA
49932297 AGAATGGAAATCAA-TGGTGTAAA
1 AGAAT-GAAATCAAGTGGTGTAAA
49932320 AGA
1 AGA
49932323 GGAGATTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 6 0.25
24 2 0.08
25 9 0.38
26 7 0.29
ACGTcount: A:0.45, C:0.04, G:0.29, T:0.22
Consensus pattern (23 bp):
AGAATGAAATCAAGTGGTGTAAA
Found at i:49935246 original size:38 final size:37
Alignment explanation
Indices: 49935187--49935263 Score: 118
Period size: 38 Copynumber: 2.1 Consensus size: 37
49935177 ATCTGCATCA
49935187 ATTAGAAAATAAAATAAGGAAAAAGATTTGAACTCAT
1 ATTAGAAAATAAAATAAGGAAAAAGATTTGAACTCAT
** *
49935224 ATNTAGAAAATAATGTAGGGAAAAAGATTTGAACTCAT
1 AT-TAGAAAATAAAATAAGGAAAAAGATTTGAACTCAT
49935262 AT
1 AT
49935264 CTTCAAGGAC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
37 2 0.06
38 34 0.94
ACGTcount: A:0.52, C:0.05, G:0.16, T:0.26
Consensus pattern (37 bp):
ATTAGAAAATAAAATAAGGAAAAAGATTTGAACTCAT
Found at i:49942248 original size:6 final size:6
Alignment explanation
Indices: 49942237--49942279 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
49942227 GTCAAATCTC
*
49942237 CCCCAG CCCCAG CCCCAG CCCCAG CCCCAG CTCCAG -CCCAG CC
1 CCCCAG CCCCAG CCCCAG CCCCAG CCCCAG CCCCAG CCCCAG CC
49942280 ACCACTTCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 4 0.12
6 30 0.88
ACGTcount: A:0.16, C:0.65, G:0.16, T:0.02
Consensus pattern (6 bp):
CCCCAG
Found at i:49951831 original size:24 final size:20
Alignment explanation
Indices: 49951787--49951828 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
49951777 AAAGCCAAAC
49951787 TTGATTTGAGTAATACATCA
1 TTGATTTGAGTAATACATCA
49951807 TTGATTTGAGTAATACATCA
1 TTGATTTGAGTAATACATCA
49951827 TT
1 TT
49951829 CATCAATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (20 bp):
TTGATTTGAGTAATACATCA
Found at i:49952090 original size:34 final size:34
Alignment explanation
Indices: 49952052--49952119 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
49952042 TTCTCCCCTT
49952052 AATTCATTTTTTGGTGAACCATAGTACAATATAC
1 AATTCATTTTTTGGTGAACCATAGTACAATATAC
49952086 AATTCATTTTTTGGTGAACCATAGTACAATATAC
1 AATTCATTTTTTGGTGAACCATAGTACAATATAC
49952120 TACTACATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (34 bp):
AATTCATTTTTTGGTGAACCATAGTACAATATAC
Found at i:49957199 original size:16 final size:17
Alignment explanation
Indices: 49957176--49957209 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
49957166 GAATCGAGTT
*
49957176 TAAAAAATTATTAATTA
1 TAAAAATTTATTAATTA
49957193 TAAAAATTTATTAATTA
1 TAAAAATTTATTAATTA
49957210 AAATTAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAAAATTTATTAATTA
Found at i:49964075 original size:12 final size:12
Alignment explanation
Indices: 49964054--49964092 Score: 55
Period size: 11 Copynumber: 3.4 Consensus size: 12
49964044 ATAGCATTCC
49964054 GAGT-GTTCAAT
1 GAGTAGTTCAAT
49964065 GAGTAGTTCAA-
1 GAGTAGTTCAAT
*
49964076 GAGAAGTTCAAT
1 GAGTAGTTCAAT
49964088 GAGTA
1 GAGTA
49964093 ATCTTAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28
Consensus pattern (12 bp):
GAGTAGTTCAAT
Found at i:49967019 original size:27 final size:27
Alignment explanation
Indices: 49966989--49967043 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
49966979 GAAATTAATT
49966989 TTCAAGTCAAACAATTGGCCCAATGGG
1 TTCAAGTCAAACAATTGGCCCAATGGG
* *
49967016 TTCAAGTCAGACAATTGGCCTAATGGG
1 TTCAAGTCAAACAATTGGCCCAATGGG
49967043 T
1 T
49967044 AATTGAACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (27 bp):
TTCAAGTCAAACAATTGGCCCAATGGG
Found at i:49967435 original size:37 final size:37
Alignment explanation
Indices: 49967394--49967464 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 37
49967384 ATTCTAAAAA
*
49967394 TAATA-TTATTTTAATAGT-TTATTATTAAATTTAACTT
1 TAATATTTATCTTAATAGTATT-TTATT-AATTTAACTT
49967431 TAATATTTATCTTAATAGTATTTTATTAATTTAA
1 TAATATTTATCTTAATAGTATTTTATTAATTTAA
49967465 TATTAAAGTG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
37 12 0.39
38 17 0.55
39 2 0.06
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (37 bp):
TAATATTTATCTTAATAGTATTTTATTAATTTAACTT
Found at i:49967448 original size:38 final size:36
Alignment explanation
Indices: 49967394--49967486 Score: 100
Period size: 38 Copynumber: 2.4 Consensus size: 36
49967384 ATTCTAAAAA
*
49967394 TAATATTATTTTAATAGT-TTATTATTAAATTTAACTT
1 TAATATTATCTTAATAGTATT-TTATT-AATTTAACTT
49967431 TAATATTTATCTTAATAGTATTTTATTAATTTAA-TAT
1 TAATA-TTATCTTAATAGTATTTTATTAATTTAACT-T
49967468 TAAAGTGATTATCTTAATA
1 T-AA-T-ATTATCTTAATA
49967487 TTAAATTTAA
Statistics
Matches: 49, Mismatches: 1, Indels: 10
0.82 0.02 0.17
Matches are distributed among these distances:
36 1 0.02
37 14 0.29
38 19 0.39
39 14 0.29
40 1 0.02
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTTTATTAATTTAACTT
Found at i:49967559 original size:11 final size:11
Alignment explanation
Indices: 49967543--49967596 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
49967533 TTAATAAGGT
49967543 TTAATATTAAA
1 TTAATATTAAA
49967554 TTAATA-TAATA
1 TTAATATTAA-A
49967565 TT--TATTAAA
1 TTAATATTAAA
* *
49967574 TATTATATTAAT
1 T-TAATATTAAA
49967586 TTAATATTAAA
1 TTAATATTAAA
49967597 ATGATTAAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
9 4 0.11
10 7 0.20
11 17 0.49
12 7 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:49967589 original size:5 final size:6
Alignment explanation
Indices: 49967543--49967595 Score: 55
Period size: 5 Copynumber: 9.7 Consensus size: 6
49967533 TTAATAAGGT
49967543 TTAATA TTAA-A TTAATA -TAATA TT--TA TTAAATA TT-ATA TTAAT-
1 TTAATA TTAATA TTAATA TTAATA TTAATA TT-AATA TTAATA TTAATA
49967586 TTAATA TTAA
1 TTAATA TTAA
49967596 AATGATTAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
4 4 0.10
5 20 0.50
6 12 0.30
7 4 0.10
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (6 bp):
TTAATA
Found at i:49967593 original size:16 final size:16
Alignment explanation
Indices: 49967546--49967594 Score: 62
Period size: 16 Copynumber: 3.1 Consensus size: 16
49967536 ATAAGGTTTA
* *
49967546 ATATTAAATTAATATA
1 ATATTAATTTAATATT
* *
49967562 ATATTTATTAAATATT
1 ATATTAATTTAATATT
49967578 ATATTAATTTAATATT
1 ATATTAATTTAATATT
49967594 A
1 A
49967595 AAATGATTAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATTAATTTAATATT
Found at i:49981322 original size:14 final size:14
Alignment explanation
Indices: 49981303--49981329 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
49981293 TTATTGTGAA
49981303 AAATAAAATAAAAT
1 AAATAAAATAAAAT
49981317 AAATAAAATAAAA
1 AAATAAAATAAAA
49981330 CACATAGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:49986149 original size:19 final size:19
Alignment explanation
Indices: 49986127--49986164 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
49986117 AATCCCACCA
49986127 CCGTCCATCACATTTAATT
1 CCGTCCATCACATTTAATT
49986146 CCGTCCATCACATTTAATT
1 CCGTCCATCACATTTAATT
49986165 AGTGGTGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.32, G:0.05, T:0.37
Consensus pattern (19 bp):
CCGTCCATCACATTTAATT
Found at i:49987146 original size:13 final size:13
Alignment explanation
Indices: 49987130--49987173 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
49987120 TCTTAGGTCA
49987130 AATAAATTATACT
1 AATAAATTATACT
*
49987143 AATAAATTTTA--
1 AATAAATTATACT
*
49987154 AATATATTATACT
1 AATAAATTATACT
49987167 AATAAAT
1 AATAAAT
49987174 ACTAAATCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 9 0.36
13 16 0.64
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (13 bp):
AATAAATTATACT
Found at i:49987179 original size:24 final size:24
Alignment explanation
Indices: 49987129--49987180 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
49987119 TTCTTAGGTC
**
49987129 AAATAAATTATACTAATAAATTTT
1 AAATAAATTATACTAATAAATACT
*
49987153 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
49987177 AAAT
1 AAAT
49987181 CTTCTCGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:49988683 original size:30 final size:30
Alignment explanation
Indices: 49988635--49988716 Score: 148
Period size: 30 Copynumber: 2.8 Consensus size: 30
49988625 CAAATTCCTC
49988635 TAAAATAATAAC-AAATTAACAAATATTTT
1 TAAAATAATAACAAAATTAACAAATATTTT
*
49988664 TAAAATAATAACAAAATTAAAAAATATTTT
1 TAAAATAATAACAAAATTAACAAATATTTT
49988694 TAAAATAATAACAAAATTAACAA
1 TAAAATAATAACAAAATTAACAA
49988717 TAAAATAAGT
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 12 0.24
30 38 0.76
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.30
Consensus pattern (30 bp):
TAAAATAATAACAAAATTAACAAATATTTT
Found at i:49992235 original size:47 final size:48
Alignment explanation
Indices: 49992183--49992283 Score: 111
Period size: 47 Copynumber: 2.1 Consensus size: 48
49992173 ATTCAAATAT
* * *
49992183 TAAAAATTTATTAAAAA-TATAAAAAAGCGT-AA-AAATATAAAATTTTA
1 TAAAAATTAATAAAAAATTATAAAAAA-CGTAAAGAAATAT-AAATTTCA
* *
49992230 TAAAAA-TAATAAAAAATTATACAAAATGTAAAGAAATATAAATTTCA
1 TAAAAATTAATAAAAAATTATAAAAAACGTAAAGAAATATAAATTTCA
49992277 TAAAAAT
1 TAAAAAT
49992284 AATTTATAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
46 10 0.22
47 29 0.64
48 6 0.13
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (48 bp):
TAAAAATTAATAAAAAATTATAAAAAACGTAAAGAAATATAAATTTCA
Found at i:49992255 original size:21 final size:21
Alignment explanation
Indices: 49992216--49992255 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
49992206 AAAGCGTAAA
* * *
49992216 AATATAAAATTTTATAAAAAT
1 AATAAAAAATTATACAAAAAT
49992237 AATAAAAAATTATACAAAA
1 AATAAAAAATTATACAAAA
49992256 TGTAAAGAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (21 bp):
AATAAAAAATTATACAAAAAT
Found at i:49992565 original size:19 final size:18
Alignment explanation
Indices: 49992525--49992565 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
49992515 TTTTCATAAT
*
49992525 TTTATATTTTTATTAAAA
1 TTTAAATTTTTATTAAAA
*
49992543 TTTAAATTTTTTTCTAAAA
1 TTTAAATTTTTAT-TAAAA
49992562 TTTA
1 TTTA
49992566 TTATTTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTAAATTTTTATTAAAA
Found at i:49997631 original size:13 final size:13
Alignment explanation
Indices: 49997610--49997693 Score: 73
Period size: 13 Copynumber: 6.3 Consensus size: 13
49997600 ATATACTAGG
*
49997610 ATGTCTATTATGT
1 ATGTATATTATGT
49997623 ATGTATATTATGT
1 ATGTATATTATGT
* *
49997636 ATATTAATGTTTATGT
1 AT-GT-AT-ATTATGT
**
49997652 ATGTATATTATAC
1 ATGTATATTATGT
49997665 ATGTATATTA-GT
1 ATGTATATTATGT
49997677 ATAG-ATATTATGT
1 AT-GTATATTATGT
49997690 ATGT
1 ATGT
49997694 TATGTTTATT
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
12 9 0.16
13 33 0.59
14 3 0.05
15 3 0.05
16 8 0.14
ACGTcount: A:0.32, C:0.02, G:0.14, T:0.51
Consensus pattern (13 bp):
ATGTATATTATGT
Found at i:49997655 original size:10 final size:9
Alignment explanation
Indices: 49997622--49997662 Score: 55
Period size: 10 Copynumber: 4.3 Consensus size: 9
49997612 GTCTATTATG
49997622 TATGTATAT
1 TATGTATAT
49997631 TATGTATAT
1 TATGTATAT
*
49997640 TAATGTTTAT
1 T-ATGTATAT
49997650 GTATGTATAT
1 -TATGTATAT
49997660 TAT
1 TAT
49997663 ACATGTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 13 0.46
10 14 0.50
11 1 0.04
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (9 bp):
TATGTATAT
Found at i:49997715 original size:30 final size:30
Alignment explanation
Indices: 49997681--49997750 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 30
49997671 ATTAGTATAG
* *
49997681 ATATTATGTATGTTATGTTTATTACTGTTT
1 ATATTATGTATGTCATGTTTATTACTATTT
*
49997711 ATATTATTTATGTCATGTTTATTACTATTT
1 ATATTATGTATGTCATGTTTATTACTATTT
49997741 ATATTATGTA
1 ATATTATGTA
49997751 ACTGACTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.27, C:0.04, G:0.10, T:0.59
Consensus pattern (30 bp):
ATATTATGTATGTCATGTTTATTACTATTT
Found at i:49997749 original size:21 final size:20
Alignment explanation
Indices: 49997700--49997749 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
49997690 ATGTTATGTT
*
49997700 TATTACTGTTTATATTATTTA
1 TATTA-TGTTTATACTATTTA
* *
49997721 TGTCATGTTTATTACTATTTA
1 TATTATGTTTA-TACTATTTA
49997742 TATTATGT
1 TATTATGT
49997750 AACTGACTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.26, C:0.06, G:0.08, T:0.60
Consensus pattern (20 bp):
TATTATGTTTATACTATTTA
Found at i:49999878 original size:96 final size:96
Alignment explanation
Indices: 49999714--49999905 Score: 357
Period size: 96 Copynumber: 2.0 Consensus size: 96
49999704 TTAAGCGAAT
*
49999714 GAGGAGGCAAATAAGTGTCAGGTGAGTTTCTACACTCCACCCCTGAGATAATAAGTATATGAGAA
1 GAGGAGGCAAAGAAGTGTCAGGTGAGTTTCTACACTCCACCCCTGAGATAATAAGTATATGAGAA
49999779 TCTGCCACTCTAGTTCAATATGCATAAATTG
66 TCTGCCACTCTAGTTCAATATGCATAAATTG
*
49999810 GAGGAGGCAAAGAAGTGTCAGGTGAGTTTCTGCACTCCACCCCTGAGATAATAAGTATATGAGAA
1 GAGGAGGCAAAGAAGTGTCAGGTGAGTTTCTACACTCCACCCCTGAGATAATAAGTATATGAGAA
*
49999875 TCTGCCATTCTAGTTCAATATGCATAAATTG
66 TCTGCCACTCTAGTTCAATATGCATAAATTG
49999906 ACTATGAATC
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (96 bp):
GAGGAGGCAAAGAAGTGTCAGGTGAGTTTCTACACTCCACCCCTGAGATAATAAGTATATGAGAA
TCTGCCACTCTAGTTCAATATGCATAAATTG
Found at i:50000293 original size:69 final size:69
Alignment explanation
Indices: 50000210--50000470 Score: 321
Period size: 69 Copynumber: 3.8 Consensus size: 69
50000200 CGAAGCTCCG
*
50000210 AGTAAACACGGGGAATATACGGTGTAAGACCATGGTTGGACTATGGCAACTAGGATAGTTCATCG
1 AGTAAACACGAGGAATATACGGTGTAAGACCATGGTTGGACTATGGCAACTAGGATAGTTCATCG
50000275 AGAC
66 AGAC
* *
50000279 AGTAAACAC-AGGGAATATACGGTGTAAAACCATGGTTGGACTATGGCAACCAGGATAG-TC-TG
1 AGTAAACACGA-GGAATATACGGTGTAAGACCATGGTTGGACTATGGCAACTAGGATAGTTCAT-
* *
50000341 CTATGAT
64 CGA-GAC
* * * * * * *
50000348 AGTAAACATGAGGAATTTACAGTATAATACCAGGGTTGGACTATGGCAACTAGGATAGTTCACCG
1 AGTAAACACGAGGAATATACGGTGTAAGACCATGGTTGGACTATGGCAACTAGGATAGTTCATCG
*
50000413 GGAC
66 AGAC
* * **
50000417 AGTAAACACGATGAATATACTGTGTAAGATTATGGTTGGACTATGGCAACTAGG
1 AGTAAACACGAGGAATATACGGTGTAAGACCATGGTTGGACTATGGCAACTAGG
50000471 TAAGACCATG
Statistics
Matches: 161, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
67 1 0.01
68 4 0.02
69 152 0.94
70 4 0.02
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.24
Consensus pattern (69 bp):
AGTAAACACGAGGAATATACGGTGTAAGACCATGGTTGGACTATGGCAACTAGGATAGTTCATCG
AGAC
Found at i:50000458 original size:138 final size:138
Alignment explanation
Indices: 50000210--50000466 Score: 372
Period size: 138 Copynumber: 1.9 Consensus size: 138
50000200 CGAAGCTCCG
* * * * *
50000210 AGTAAACACGGGGAATATACGGTGTAAGACCATGGTTGGACTATGGCAACTAGGATAGTTCATCG
1 AGTAAACACGAGGAATATACAGTATAAGACCAGGGTTGGACTATGGCAACTAGGATAGTTCACCG
50000275 AGACAGTAAACACAGGGAATATACGGTGTAAAACCATGGTTGGACTATGGCAACCAGGATAGTCT
66 AGACAGTAAACACAGGGAATATACGGTGTAAAACCATGGTTGGACTATGGCAACCAGGATAGTCT
50000340 GCTATGAT
131 GCTATGAT
* * *
50000348 AGTAAACATGAGGAATTTACAGTATAATACCAGGGTTGGACTATGGCAACTAGGATAGTTCACCG
1 AGTAAACACGAGGAATATACAGTATAAGACCAGGGTTGGACTATGGCAACTAGGATAGTTCACCG
* * * * **
50000413 GGACAGTAAACAC-GATGAATATACTGTGTAAGATTATGGTTGGACTATGGCAAC
66 AGACAGTAAACACAG-GGAATATACGGTGTAAAACCATGGTTGGACTATGGCAAC
50000467 TAGGTAAGAC
Statistics
Matches: 104, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
137 1 0.01
138 103 0.99
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (138 bp):
AGTAAACACGAGGAATATACAGTATAAGACCAGGGTTGGACTATGGCAACTAGGATAGTTCACCG
AGACAGTAAACACAGGGAATATACGGTGTAAAACCATGGTTGGACTATGGCAACCAGGATAGTCT
GCTATGAT
Found at i:50000552 original size:99 final size:99
Alignment explanation
Indices: 50000376--50000565 Score: 283
Period size: 99 Copynumber: 1.9 Consensus size: 99
50000366 ACAGTATAAT
* * *
50000376 ACCAGGGTTGGACTATGGCAACTAGGATAGTTCACCGGGACAGTAAACACGATGAATATACTGTG
1 ACCAGGGTTGGACTATGGCAACTAGGATAGTTCACCGGGACAGTAAACACAAGGAATATACGGTG
** * *
50000441 TAAGATTATGGTTGGACTATGGCAACTAGGTAAG
66 TAAGACCATGGTTAGACTATGACAACTAGGTAAG
* *
50000475 ACCATGGTTGGACTATGGCAA-TCATGATAGTTCACCGGGACAGTAAACACAAGGAATATACGGT
1 ACCAGGGTTGGACTATGGCAACT-AGGATAGTTCACCGGGACAGTAAACACAAGGAATATACGGT
50000539 GTAAGACCATGGTTAGACTATGACAAC
65 GTAAGACCATGGTTAGACTATGACAAC
50000566 CAAAATAGTC
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
98 1 0.01
99 80 0.99
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (99 bp):
ACCAGGGTTGGACTATGGCAACTAGGATAGTTCACCGGGACAGTAAACACAAGGAATATACGGTG
TAAGACCATGGTTAGACTATGACAACTAGGTAAG
Found at i:50000585 original size:69 final size:69
Alignment explanation
Indices: 50000470--50000634 Score: 215
Period size: 69 Copynumber: 2.4 Consensus size: 69
50000460 TGGCAACTAG
* * ** *
50000470 GTAAGACCATGGTTGGACTATGGCAATCATGATAGTTCACCGGGACAGTAAACACAAGGAATATA
1 GTAAGACCATGGTTGGACTATGACAACCAAAATAGTTCACCAGGACAGTAAACACAAGGAATATA
50000535 CGGT
66 CGGT
* * **
50000539 GTAAGACCATGGTTAGACTATGACAACCAAAATAG-TCTGCCAGGACAGTAAACACGGGGAATAT
1 GTAAGACCATGGTTGGACTATGACAACCAAAATAGTTC-ACCAGGACAGTAAACACAAGGAATAT
*
50000603 ACTGT
65 ACGGT
*
50000608 GTAAGAACATGGTTGGACTATGACAAC
1 GTAAGACCATGGTTGGACTATGACAAC
50000635 TAGGTTAGTC
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
68 2 0.02
69 81 0.98
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (69 bp):
GTAAGACCATGGTTGGACTATGACAACCAAAATAGTTCACCAGGACAGTAAACACAAGGAATATA
CGGT
Found at i:50000655 original size:69 final size:68
Alignment explanation
Indices: 50000470--50000661 Score: 199
Period size: 69 Copynumber: 2.8 Consensus size: 68
50000460 TGGCAACTAG
* * * *
50000470 GTAAGACCATGGTTGGACTATGGCAA-TCATGATAGTTCACCGGGACAGTAAACACAAGGAATAT
1 GTAAGACCATGGTTGGACTATGACAACT-AAGATAGTCCA-CAGGACAGTAAACACAAGGAATAT
50000534 ACGGT
64 ACGGT
* * * **
50000539 GTAAGACCATGGTTAGACTATGACAACCAAAATAGTCTGC-CAGGACAGTAAACACGGGGAATAT
1 GTAAGACCATGGTTGGACTATGACAACTAAGATAGTC--CACAGGACAGTAAACACAAGGAATAT
*
50000603 ACTGT
64 ACGGT
* * * *
50000608 GTAAGAACATGGTTGGACTATGACAACTAGGTTAGTCCACTGAGACAGTAAACA
1 GTAAGACCATGGTTGGACTATGACAACTAAGATAGTCCACAG-GACAGTAAACA
50000662 TGAGGATTTT
Statistics
Matches: 101, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
67 1 0.01
68 2 0.02
69 97 0.96
71 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (68 bp):
GTAAGACCATGGTTGGACTATGACAACTAAGATAGTCCACAGGACAGTAAACACAAGGAATATAC
GGT
Found at i:50000657 original size:237 final size:237
Alignment explanation
Indices: 50000233--50000661 Score: 617
Period size: 237 Copynumber: 1.8 Consensus size: 237
50000223 AATATACGGT
* *
50000233 GTAAGACCATGGTTGGACTATGGCAACTAGGATAGTTCATCGAGACAGTAAACACAGGGAATATA
1 GTAAGACCATGGTTGGACTATGGCAACTAGGATAGTTCACCGAGACAGTAAACACAAGGAATATA
* * ** * * * *
50000298 CGGTGTAAAACCATGGTTGGACTATGGCAACCAGGATAGTCTGCTATGATAGTAAACATGAGGAA
66 CGGTGTAAAACCATGGTTAGACTATGACAACCAAAATAGTCTGCCAGGACAGTAAACACGAGGAA
* * * * * *
50000363 TTTACAGTATAATACCAGGGTTGGACTATGGCAACTAGGATAGTTCACCGGGACAGTAAACACGA
131 TATACAGTATAAGAACAGGGTTGGACTATGACAACTAGGATAGTCCACCGAGACAGTAAACACGA
50000428 TGAATATACTGTGTAAGATTATGGTTGGACTATGGCAACTAG
196 TGAATATACTGTGTAAGATTATGGTTGGACTATGGCAACTAG
* *
50000470 GTAAGACCATGGTTGGACTATGGCAA-TCATGATAGTTCACCGGGACAGTAAACACAAGGAATAT
1 GTAAGACCATGGTTGGACTATGGCAACT-AGGATAGTTCACCGAGACAGTAAACACAAGGAATAT
* *
50000534 ACGGTGTAAGACCATGGTTAGACTATGACAACCAAAATAGTCTGCCAGGACAGTAAACACGGGGA
65 ACGGTGTAAAACCATGGTTAGACTATGACAACCAAAATAGTCTGCCAGGACAGTAAACACGAGGA
* * * * *
50000599 ATATACTGTGTAAGAACATGGTTGGACTATGACAACTAGGTTAGTCCACTGAGACAGTAAACA
130 ATATACAGTATAAGAACAGGGTTGGACTATGACAACTAGGATAGTCCACCGAGACAGTAAACA
50000662 TGAGGATTTT
Statistics
Matches: 166, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
236 1 0.01
237 165 0.99
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.23
Consensus pattern (237 bp):
GTAAGACCATGGTTGGACTATGGCAACTAGGATAGTTCACCGAGACAGTAAACACAAGGAATATA
CGGTGTAAAACCATGGTTAGACTATGACAACCAAAATAGTCTGCCAGGACAGTAAACACGAGGAA
TATACAGTATAAGAACAGGGTTGGACTATGACAACTAGGATAGTCCACCGAGACAGTAAACACGA
TGAATATACTGTGTAAGATTATGGTTGGACTATGGCAACTAG
Found at i:50002530 original size:27 final size:25
Alignment explanation
Indices: 50002463--50002531 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 25
50002453 GTTCAGCCAT
*
50002463 AATTAAATTTAATCACTTTAATATTA
1 AATTAAATTTAAT-ATTTTAATATTA
* *
50002489 AATTTAATCTAATATTTATAAATATTA
1 AATTAAATTTAATATTT-T-AATATTA
*
50002516 GATTAAATTTAATATT
1 AATTAAATTTAATATT
50002532 AAATCTTATT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
25 3 0.09
26 12 0.34
27 20 0.57
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.48
Consensus pattern (25 bp):
AATTAAATTTAATATTTTAATATTA
Found at i:50016634 original size:49 final size:50
Alignment explanation
Indices: 50016558--50016654 Score: 137
Period size: 49 Copynumber: 2.0 Consensus size: 50
50016548 ACATGTCAAC
50016558 ATTTAATTAATTTTTAAAATTTAAAAAATATATTTT-TATACTTTTTAATAA
1 ATTTAATTAATTTTTAAAATTTAAAAAATAT-TTTTATATA-TTTTTAATAA
**
50016609 ATTTAATT-ATTTTT-ATTTTTAAAAAATATTTTTATATATTTTTAAT
1 ATTTAATTAATTTTTAAAATTTAAAAAATATTTTTATATATTTTTAAT
50016655 TTTTTTTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
48 12 0.28
49 17 0.40
50 6 0.14
51 8 0.19
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (50 bp):
ATTTAATTAATTTTTAAAATTTAAAAAATATTTTTATATATTTTTAATAA
Found at i:50016639 original size:47 final size:51
Alignment explanation
Indices: 50016558--50016654 Score: 130
Period size: 48 Copynumber: 2.0 Consensus size: 51
50016548 ACATGTCAAC
*
50016558 ATTTAATTAATTTTTAAAATTTAAAAAATATATTTTTATA-CTTTTTAATAA
1 ATTTAATTAATTTTT-AAATTTAAAAAATATATTTTTATATATTTTTAATAA
* *
50016609 ATTTAATT-ATTTTT-ATTTTTAAAAA-ATATTTTTATATATTTTTAAT
1 ATTTAATTAATTTTTAAATTTAAAAAATATATTTTTATATATTTTTAAT
50016655 TTTTTTTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
47 11 0.26
48 17 0.40
50 6 0.14
51 8 0.19
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (51 bp):
ATTTAATTAATTTTTAAATTTAAAAAATATATTTTTATATATTTTTAATAA
Found at i:50017386 original size:29 final size:29
Alignment explanation
Indices: 50017336--50017414 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
50017326 TTGTTATGGG
* * * *
50017336 AAAAATAATTTTGACAAT-ATGTGTTTTGA
1 AAAAATAATTTTGAC-GTGATGTATTCTAA
*
50017365 AAAAATAAATTTGACGTGATGTATTCTAA
1 AAAAATAATTTTGACGTGATGTATTCTAA
* *
50017394 AAAAATTATTTTGACGAGATG
1 AAAAATAATTTTGACGTGATG
50017415 AATTATTTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
28 1 0.02
29 40 0.98
ACGTcount: A:0.43, C:0.05, G:0.15, T:0.37
Consensus pattern (29 bp):
AAAAATAATTTTGACGTGATGTATTCTAA
Found at i:50021170 original size:21 final size:22
Alignment explanation
Indices: 50021115--50021163 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
50021105 TTTTAAAAAA
*
50021115 ATTAAAA-TATT-TTAAAATTC
1 ATTAAAATTATTATAAAAATTC
50021135 ATTAAAATTATTATAAAAATT-
1 ATTAAAATTATTATAAAAATTC
*
50021156 ATTTAAAT
1 ATTAAAAT
50021164 ACTTATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 7 0.28
21 11 0.44
22 7 0.28
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
ATTAAAATTATTATAAAAATTC
Found at i:50022823 original size:72 final size:72
Alignment explanation
Indices: 50022706--50022849 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
50022696 GATGAATACT
50022706 CGTTGAGAAGGCTAAGCGCAGATTCTAAGCCTCATAATCATTTTTTGAGGAATTTCAACAACCTT
1 CGTTGAGAAGGCTAAGCGCAGATTCTAAGCCTCATAATCATTTTTTGAGGAATTTCAACAACCTT
50022771 TAGCTAG
66 TAGCTAG
*
50022778 CGTTGAGAAGGCTAAGCTCAGATTCTAAGCCTCATAATCATTTTTTGAGGAATTTCAACAACCTT
1 CGTTGAGAAGGCTAAGCGCAGATTCTAAGCCTCATAATCATTTTTTGAGGAATTTCAACAACCTT
50022843 TAGCTAG
66 TAGCTAG
50022850 ATAAATTTAA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (72 bp):
CGTTGAGAAGGCTAAGCGCAGATTCTAAGCCTCATAATCATTTTTTGAGGAATTTCAACAACCTT
TAGCTAG
Found at i:50023085 original size:23 final size:24
Alignment explanation
Indices: 50023058--50023105 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
50023048 AAAAGATAAA
50023058 TAAAAATAAATA-AATATAA-AAGC
1 TAAAAATAAATATAA-ATAATAAGC
*
50023081 TAAAATTAAATATAAATAATAAGC
1 TAAAAATAAATATAAATAATAAGC
50023105 T
1 T
50023106 TTAAAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (24 bp):
TAAAAATAAATATAAATAATAAGC
Found at i:50035103 original size:87 final size:86
Alignment explanation
Indices: 50034981--50035296 Score: 268
Period size: 87 Copynumber: 3.7 Consensus size: 86
50034971 TTGAAAATAA
* * * * * *
50034981 AAATAAAAATTGAATAAAATCTTTTTCATGATTTATTCCTGTCGTTCAACAGATTTTATTTCATT
1 AAATTAAAATTAAATAAAATCTGTTTC-GGATTTATTCCTGCCGTTCAACAGATTTTATTCCATT
* *
50035046 TTTTGACTTTGTTTCCAAATGAG
65 TTTT-ACTTTGTTGCCAAACGAG
* * *
50035069 TATTTAAAA-TAAATAAAATCTGTTTCGGAATTTATTTTCT-CCGTTCAACAGATTTTATTCCAT
1 AAATTAAAATTAAATAAAATCTGTTTCGG-ATTTA-TTCCTGCCGTTCAACAGATTTTATTCCAT
*
50035132 TTTTTATTTTGTTGCCAAACGAG
64 TTTTTACTTTGTTGCCAAACGAG
* * * * *
50035155 AAATTAAAATTAAATAAAATTTGTTTTGGGATTTATTCCCGCCGTTTAACAGATTTTATT-CAAT
1 AAATTAAAATTAAATAAAATCTG-TTTCGGATTTATTCCTGCCGTTCAACAGATTTTATTCCATT
** * * **
50035219 TTCAATTTTGTTTCCAAAATAG
65 TTTTACTTTGTTGCCAAACGAG
* * * * * *
50035241 -AATT-AAATTGAGT--AATCTGTTTTGAGATTTATTCCCGCCGTTTAACATATTTTATT
1 AAATTAAAATTAAATAAAATCTGTTTCG-GATTTATTCCTGCCGTTCAACAGATTTTATT
50035297 TTGATTTTGT
Statistics
Matches: 192, Mismatches: 30, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
81 4 0.02
82 35 0.18
84 7 0.04
85 4 0.02
86 46 0.24
87 81 0.42
88 15 0.08
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.45
Consensus pattern (86 bp):
AAATTAAAATTAAATAAAATCTGTTTCGGATTTATTCCTGCCGTTCAACAGATTTTATTCCATTT
TTTACTTTGTTGCCAAACGAG
Found at i:50039401 original size:28 final size:28
Alignment explanation
Indices: 50039300--50039401 Score: 82
Period size: 28 Copynumber: 3.5 Consensus size: 28
50039290 TCAGAGTTAA
* *
50039300 CTAGGCCTTAGCCCATATCAATATTAAT
1 CTAGGCCTTAGCCCATATCAGTATCAAT
* * *
50039328 CTAGGTCATAGCCCCT-TACAGTATCAGAGTAT
1 CTAGGCCTTAGCCCATAT-CAGTATC--A--AT
*
50039360 ACTGGGCC-TAGCCCATATCAGTATCAAT
1 -CTAGGCCTTAGCCCATATCAGTATCAAT
50039388 CTAGGCCTTAGCCC
1 CTAGGCCTTAGCCC
50039402 TATTACAAGT
Statistics
Matches: 57, Mismatches: 9, Indels: 16
0.70 0.11 0.20
Matches are distributed among these distances:
27 7 0.12
28 26 0.46
30 2 0.04
32 16 0.28
33 6 0.11
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (28 bp):
CTAGGCCTTAGCCCATATCAGTATCAAT
Found at i:50039426 original size:60 final size:59
Alignment explanation
Indices: 50039289--50039437 Score: 151
Period size: 60 Copynumber: 2.5 Consensus size: 59
50039279 CTATTCAAAA
* * * *
50039289 ATCAGAGT-TAACTAGGCCTTAGCCCATATCAATATTAATCTAGGTCATAGCCCCTTACAG
1 ATCAGAGTAT-ACTGGGCC-TAGCCCATATCAATATCAATCTAGGCCATAGCCCATTACAG
* *
50039349 TATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAATCTAGGCCTTAGCCCTATTACA-
1 -ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTAGGCCATAGCCC-ATTACAG
* *
50039409 AGTC-GAGATATATTGGGCCTTGCCCATAT
1 A-TCAGAG-TATACTGGGCCTAGCCCATAT
50039438 TAACACAGTT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
59 4 0.05
60 51 0.67
61 20 0.26
62 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (59 bp):
ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCTAGGCCATAGCCCATTACAG
Found at i:50039455 original size:20 final size:20
Alignment explanation
Indices: 50039430--50039468 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
50039420 ATTGGGCCTT
50039430 GCCCATATT-AACACAGTTGG
1 GCCCAT-TTCAACACAGTTGG
*
50039450 GCCCATTTCAATACAGTTG
1 GCCCATTTCAACACAGTTG
50039469 ACCCATAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (20 bp):
GCCCATTTCAACACAGTTGG
Found at i:50040953 original size:25 final size:26
Alignment explanation
Indices: 50040911--50040959 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
50040901 TTTTGGCTAG
50040911 AGAAGAAAAGAAGGAGAAAAGAAAAT
1 AGAAGAAAAGAAGGAGAAAAGAAAAT
* *
50040937 AGAAGAAGAG-AGGAGAAGAGAAA
1 AGAAGAAAAGAAGGAGAAAAGAAA
50040960 GAAGAATTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (26 bp):
AGAAGAAAAGAAGGAGAAAAGAAAAT
Found at i:50040965 original size:25 final size:23
Alignment explanation
Indices: 50040911--50040965 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 23
50040901 TTTTGGCTAG
50040911 AGAAGAAAAGAAGGAGAAAAGAA
1 AGAAGAAAAGAAGGAGAAAAGAA
*
50040934 A-ATAGAAGAAGAGAGGAGAAGAGAA
1 AGA-AGAA-AAGA-AGGAGAAAAGAA
50040959 AGAAGAA
1 AGAAGAA
50040966 TTCGACACTC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 1 0.04
23 5 0.19
24 4 0.15
25 16 0.59
26 1 0.04
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (23 bp):
AGAAGAAAAGAAGGAGAAAAGAA
Found at i:50043568 original size:5 final size:5
Alignment explanation
Indices: 50043558--50043593 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
50043548 TAAGTATATA
*
50043558 ATTAT ATTAT ATTAT ATTAT ATTAT TTTAT ATTAT A
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A
50043594 AGTAAATGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
ATTAT
Found at i:50050361 original size:27 final size:27
Alignment explanation
Indices: 50050318--50050393 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
50050308 TCCACCAGTT
*
50050318 GTGCCTACCAAGA-AGGCACAACTAGTC
1 GTGCCTGCC-AGATAGGCACAACTAGTC
* *
50050345 GTGCCTGCCAGATAGGCTCAACTAGTT
1 GTGCCTGCCAGATAGGCACAACTAGTC
* * *
50050372 GAGCCTGTCAGGTAGGCACAAC
1 GTGCCTGCCAGATAGGCACAAC
50050394 ATGTATGTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.07
27 38 0.93
ACGTcount: A:0.28, C:0.28, G:0.26, T:0.18
Consensus pattern (27 bp):
GTGCCTGCCAGATAGGCACAACTAGTC
Found at i:50060782 original size:15 final size:15
Alignment explanation
Indices: 50060762--50060799 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
50060752 TCAAGATAAG
50060762 GAAATCCATAACAGA
1 GAAATCCATAACAGA
* *
50060777 GAAATCCATAATATA
1 GAAATCCATAACAGA
50060792 GAAATCCA
1 GAAATCCA
50060800 ACATAAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.53, C:0.18, G:0.11, T:0.18
Consensus pattern (15 bp):
GAAATCCATAACAGA
Found at i:50060809 original size:15 final size:15
Alignment explanation
Indices: 50060757--50060809 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
50060747 AGAGTTCAAG
*
50060757 ATAAGGAAATCCATA
1 ATAAAGAAATCCATA
* *
50060772 ACAGAGAAATCCATA
1 ATAAAGAAATCCATA
*
50060787 ATATAGAAATCCA-A
1 ATAAAGAAATCCATA
50060801 CATAAAGAA
1 -ATAAAGAA
50060810 GTCTATAAGA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
14 1 0.03
15 30 0.97
ACGTcount: A:0.57, C:0.15, G:0.11, T:0.17
Consensus pattern (15 bp):
ATAAAGAAATCCATA
Found at i:50064354 original size:19 final size:20
Alignment explanation
Indices: 50064318--50064355 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
50064308 CATGAATAGC
50064318 AGGGAAAGAAAGAAGAAAAA
1 AGGGAAAGAAAGAAGAAAAA
50064338 AGGGAAAGAAA-AAGAAAA
1 AGGGAAAGAAAGAAGAAAA
50064356 GGAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (20 bp):
AGGGAAAGAAAGAAGAAAAA
Found at i:50075031 original size:21 final size:21
Alignment explanation
Indices: 50075002--50075049 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
50074992 AAGTTTTTAC
* *
50075002 TTATTATTTAAGAA-ATAATAA
1 TTATAATTTAA-AATATAACAA
50075023 TTATAATTTAAAATATAACAA
1 TTATAATTTAAAATATAACAA
50075044 -TATAAT
1 TTATAAT
50075050 AGTTATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (21 bp):
TTATAATTTAAAATATAACAA
Found at i:50075122 original size:57 final size:57
Alignment explanation
Indices: 50075057--50075167 Score: 195
Period size: 57 Copynumber: 1.9 Consensus size: 57
50075047 AATAGTTATA
*
50075057 ATAAATAAAAGAAATAAAAACATAAAGGAAAAGGAAAAAGAAGGGCACGAATAGTAG
1 ATAAATAAAAGAAATAAAAACATAAAGAAAAAGGAAAAAGAAGGGCACGAATAGTAG
* *
50075114 ATAAATAAAAGAAATAAAAACATAAATAAAAAGGAAAAAGAAGGGCATGAATAG
1 ATAAATAAAAGAAATAAAAACATAAAGAAAAAGGAAAAAGAAGGGCACGAATAG
50075168 CAGGGAAAGA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.65, C:0.05, G:0.19, T:0.12
Consensus pattern (57 bp):
ATAAATAAAAGAAATAAAAACATAAAGAAAAAGGAAAAAGAAGGGCACGAATAGTAG
Found at i:50075205 original size:19 final size:20
Alignment explanation
Indices: 50075169--50075206 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
50075159 CATGAATAGC
50075169 AGGGAAAGAAAGAAGAAAAA
1 AGGGAAAGAAAGAAGAAAAA
50075189 AGGGAAAGAAA-AAGAAAA
1 AGGGAAAGAAAGAAGAAAA
50075207 GAAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (20 bp):
AGGGAAAGAAAGAAGAAAAA
Found at i:50087481 original size:37 final size:37
Alignment explanation
Indices: 50087422--50087530 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
50087412 AGCTCAGACG
** *
50087422 AAATCTCCACACAAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
50087459 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
50087496 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
50087531 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:50087744 original size:46 final size:46
Alignment explanation
Indices: 50087677--50087805 Score: 136
Period size: 46 Copynumber: 2.8 Consensus size: 46
50087667 ATATATACAC
* * *
50087677 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
50087723 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATATAT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
50087769 A-CAT-GTTCACATTCATCACATTGGCCATTCGGCCTTA
1 ATC-TCATACACA-TC-TCACATTAGCCATTCGGCCTTA
50087806 TCTCATATAT
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 6 0.09
46 43 0.62
47 20 0.29
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.34
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:50087802 original size:47 final size:47
Alignment explanation
Indices: 50087740--50088003 Score: 375
Period size: 47 Copynumber: 5.5 Consensus size: 47
50087730 ACACATTTCG
* * *
50087740 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
50087787 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACTTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
50087834 CATTGGCCATTCGGACTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* **
50087881 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCATCA
* *
50087932 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
50087979 CATTGGCCATTCGGCCTTATCACAT
1 CATTGGCCATTCGGCCTTATCACAT
50088004 TGGCCATTCG
Statistics
Matches: 191, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
47 146 0.76
49 6 0.03
51 39 0.20
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:50087859 original size:24 final size:24
Alignment explanation
Indices: 50087824--50087907 Score: 61
Period size: 24 Copynumber: 3.5 Consensus size: 24
50087814 ATGCATGTTC
50087824 ACTTTCATCACATTGGCCATTCGG
1 ACTTTCATCACATTGGCCATTCGG
**
50087848 ACTTATCA-CACATACG-CATGTTC--
1 ACTT-TCATCACATTGGCCA--TTCGG
*
50087871 ACATTCATCACATTGGCCATTCGG
1 ACTTTCATCACATTGGCCATTCGG
*
50087895 CCTTATCA-CACAT
1 ACTT-TCATCACAT
50087908 ATATATACGG
Statistics
Matches: 45, Mismatches: 7, Indels: 16
0.66 0.10 0.24
Matches are distributed among these distances:
22 6 0.13
23 11 0.24
24 19 0.42
25 9 0.20
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (24 bp):
ACTTTCATCACATTGGCCATTCGG
Found at i:50087928 original size:145 final size:141
Alignment explanation
Indices: 50087740--50088002 Score: 418
Period size: 145 Copynumber: 1.8 Consensus size: 141
50087730 ACACATTTCG
*
50087740 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTT
* * * *
50087805 ATCTCATATATGCATGTTCACTTTCATCACATTGGCCATTCGGACTTATCACACATACGCATGTT
66 ATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGACTTATCACACATACGCATGTT
50087870 CACATTCATCA
131 CACATTCATCA
* *
50087881 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTAGCCATTCGGCCTTA-C-CAC--ATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
50087946 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
62 CCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGACTTATCACA
50088003 TTGGCCATTC
Statistics
Matches: 110, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
141 18 0.16
142 1 0.01
143 3 0.03
145 88 0.80
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.32
Consensus pattern (141 bp):
CATTAGCCATTCGGCCTTACCACATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGACTTATCACACATACGCATGTT
CACATTCATCA
Found at i:50087951 original size:98 final size:96
Alignment explanation
Indices: 50087740--50088002 Score: 395
Period size: 98 Copynumber: 2.7 Consensus size: 96
50087730 ACACATTTCG
* * * **
50087740 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * * *
50087805 AT--CTCATATATGCATGTTCACTTTCATCA
66 ATCACACATATATACAGGTTCACATTCATCA
*
50087834 CATTGGCCATTCGGACTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
50087899 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACAC--ATATATACAGGTTCACATTCATCA
50087932 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
50087997 ATCACA
66 ATCACA
50088003 TTGGCCATTC
Statistics
Matches: 153, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
94 61 0.40
96 2 0.01
98 90 0.59
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.32
Consensus pattern (96 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATATACAGGTTCACATTCATCA
Found at i:50088002 original size:22 final size:22
Alignment explanation
Indices: 50087975--50088024 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
50087965 GTTCACATTC
50087975 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
50087997 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
50088019 ATCACA
1 ATCACA
50088025 CATATATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.22, C:0.32, G:0.16, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:50088155 original size:76 final size:76
Alignment explanation
Indices: 50088029--50088253 Score: 432
Period size: 76 Copynumber: 3.0 Consensus size: 76
50088019 ATCACACATA
*
50088029 TATAAAAGGGTGTTAGTTACACACCTGTTTGCGACGATATGCTGACGAGATCCACACACGAACTG
1 TATAAGAGGGTGTTAGTTACACACCTGTTTGCGACGATATGCTGACGAGATCCACACACGAACTG
50088094 CTTACAATGTC
66 CTTACAATGTC
50088105 TATAAGAGGGTGTTAGTTACACACCTGTTTGCGACGATATGCTGACGAGATCCACACACGAACTG
1 TATAAGAGGGTGTTAGTTACACACCTGTTTGCGACGATATGCTGACGAGATCCACACACGAACTG
50088170 CTTACAATGTC
66 CTTACAATGTC
50088181 TATAAGAGGGTGTTAGTTACACACCTGTTTGCGACGATATGCTGACGAGATCCACACACGAACTG
1 TATAAGAGGGTGTTAGTTACACACCTGTTTGCGACGATATGCTGACGAGATCCACACACGAACTG
*
50088246 CCTACAAT
66 CTTACAAT
50088254 TGGATTACTA
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 147 1.00
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (76 bp):
TATAAGAGGGTGTTAGTTACACACCTGTTTGCGACGATATGCTGACGAGATCCACACACGAACTG
CTTACAATGTC
Found at i:50089375 original size:26 final size:26
Alignment explanation
Indices: 50089344--50089425 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
50089334 TGAAATGCCC
50089344 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
50089370 TTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
50089396 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
50089422 ATCA
1 ATCA
50089426 ATTTTTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:50096911 original size:28 final size:28
Alignment explanation
Indices: 50096871--50096928 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
50096861 TTCACAACAC
50096871 ATGCAGGATCTCAAGCCATTGGTACGGT
1 ATGCAGGATCTCAAGCCATTGGTACGGT
50096899 ATGCAGGATCTCAAGCCATTGGTACGGT
1 ATGCAGGATCTCAAGCCATTGGTACGGT
50096927 AT
1 AT
50096929 CCATCACCGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (28 bp):
ATGCAGGATCTCAAGCCATTGGTACGGT
Found at i:50099716 original size:47 final size:47
Alignment explanation
Indices: 50099662--50099756 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
50099652 CCATTCAGGT
50099662 AACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATTAATTGGG
1 AACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATTAATTGGG
50099709 AACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATTAATTGGG
1 AACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATTAATTGGG
50099756 A
1 A
50099757 CTTAGCCCCT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (47 bp):
AACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATTAATTGGG
Found at i:50100129 original size:25 final size:27
Alignment explanation
Indices: 50100092--50100144 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
50100082 TCAAACATGC
50100092 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
50100118 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
50100144 A
1 A
50100145 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:50101661 original size:32 final size:32
Alignment explanation
Indices: 50101624--50101688 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
50101614 AATGCTTACC
50101624 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
50101656 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
50101688 A
1 A
50101689 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:50107867 original size:25 final size:27
Alignment explanation
Indices: 50107830--50107882 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
50107820 TCAAACATGC
50107830 ATTTAGGTCAATTTAACT-CTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
50107856 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
50107882 A
1 A
50107883 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:50109378 original size:32 final size:32
Alignment explanation
Indices: 50109342--50109403 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
50109332 AATGCTTACC
50109342 ATGCCCATCATCCATTAACTATTAAAATGCCA
1 ATGCCCATCATCCATTAACTATTAAAATGCCA
50109374 ATGCCCATCATCCATTAACTATTAAAATGC
1 ATGCCCATCATCCATTAACTATTAAAATGC
50109404 TAAAATGCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.29
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCCA
Found at i:50113041 original size:74 final size:74
Alignment explanation
Indices: 50112888--50113072 Score: 208
Period size: 74 Copynumber: 2.5 Consensus size: 74
50112878 ACATTTGCTA
* ** * ** * *
50112888 TGTAGGTCTAACCCAAATGGGTAAGAAAACACTATTGTTTATGATTAGCTTGGATGAGCAATTGT
1 TGTAGGTTTAACCCAAATGGGTAACTAAACACTATTGTTCATGATTAGCTCAGATAAGCAATTGA
***
50112953 TACTTGTTG
66 TACTTACCG
* * *
50112962 CGTAGGTTTAACCCGAATGGGTAACTAGACACTATTGTTCATGATTAGCTCAGATAAGCAATTGA
1 TGTAGGTTTAACCCAAATGGGTAACTAAACACTATTGTTCATGATTAGCTCAGATAAGCAATTGA
*
50113027 TATTTACCG
66 TACTTACCG
* *
50113036 TGTAGGTTTAACCCAAAACGGGTGACTAAACACTATT
1 TGTAGGTTTAACCC-AAATGGGTAACTAAACACTATT
50113073 TTTTTCACCT
Statistics
Matches: 90, Mismatches: 20, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
74 72 0.80
75 18 0.20
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (74 bp):
TGTAGGTTTAACCCAAATGGGTAACTAAACACTATTGTTCATGATTAGCTCAGATAAGCAATTGA
TACTTACCG
Found at i:50120638 original size:60 final size:59
Alignment explanation
Indices: 50120501--50120649 Score: 160
Period size: 60 Copynumber: 2.5 Consensus size: 59
50120491 CTATTTAGAA
* * *
50120501 ATCAGAGT-TAATTGGGCTTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 ATCAGAGTAT-ATTGGGC-CTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG
* * *
50120561 TATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA-
1 -ATCAGAGTATATTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAG
*
50120621 AGTC-GAGATATATTGGGCCTTGCCCATAT
1 A-TCAGAG-TATATTGGGCCTAGCCCATAT
50120650 TAACACAGTT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
59 4 0.05
60 52 0.68
61 19 0.25
62 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (59 bp):
ATCAGAGTATATTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG
Found at i:50120667 original size:20 final size:20
Alignment explanation
Indices: 50120642--50120687 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
50120632 ATTGGGCCTT
50120642 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
50120662 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
50120681 GCCCATA
1 GCCCATA
50120688 AAAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:50122794 original size:3 final size:3
Alignment explanation
Indices: 50122786--50122826 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
50122776 AAACATATGA
*
50122786 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
50122827 CATCCGAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:50125796 original size:33 final size:33
Alignment explanation
Indices: 50125754--50125822 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
50125744 GTGAACTTAC
50125754 CATTACCTTTCCTCACCTGTTTCATATGCATAA
1 CATTACCTTTCCTCACCTGTTTCATATGCATAA
50125787 CATTACCTTTCCTCACCTGTTTCATATGCATAA
1 CATTACCTTTCCTCACCTGTTTCATATGCATAA
50125820 CAT
1 CAT
50125823 ACAAAGCTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.25, C:0.30, G:0.06, T:0.39
Consensus pattern (33 bp):
CATTACCTTTCCTCACCTGTTTCATATGCATAA
Found at i:50131566 original size:48 final size:46
Alignment explanation
Indices: 50131448--50131567 Score: 141
Period size: 46 Copynumber: 2.6 Consensus size: 46
50131438 TGATATGTGT
* *
50131448 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTTAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCTAGATGAAA
* * * *
50131494 GCTAGTGTAAAACATGTTTGGGACATGCATCGGCCTCTAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCTAGAT-GA-AA
* * *
50131542 GCTAGTGTAGGACCTGTCTAGGACAT
1 GCTAGTGTAAGACATGTCTGGGACAT
50131568 CGCGTCAGCT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
46 38 0.62
47 1 0.02
48 22 0.36
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCTAGATGAAA
Found at i:50133516 original size:22 final size:22
Alignment explanation
Indices: 50133474--50133516 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
50133464 TGCCAAAGGT
*
50133474 ACACGGGCGTGTCCCTATGTTC
1 ACACGGGCGTGTACCTATGTTC
50133496 ACACGGGCGTGTGACCT-TGTT
1 ACACGGGCGTGT-ACCTATGTT
50133517 TCAAGGGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.14, C:0.28, G:0.30, T:0.28
Consensus pattern (22 bp):
ACACGGGCGTGTACCTATGTTC
Found at i:50143552 original size:28 final size:27
Alignment explanation
Indices: 50143521--50143636 Score: 90
Period size: 29 Copynumber: 4.1 Consensus size: 27
50143511 GTGAGCATGA
*
50143521 ATATAATATGATTTGGGCCTAATGGGCC
1 ATATAATAAGATTT-GGCCTAATGGGCC
* *
50143549 ATATGATAAGAATTTGGCCTAGTGGGCC
1 ATATAATAAG-ATTTGGCCTAATGGGCC
* * * * *
50143577 ATAAGAATATGAACTGGGCCAAATGGGCC
1 AT-ATAATAAG-ATTTGGCCTAATGGGCC
* *
50143606 ATTTGAATAAGA-TTGGCCTAGTGGGCC
1 ATAT-AATAAGATTTGGCCTAATGGGCC
50143633 ATAT
1 ATAT
50143637 GCATGTATGT
Statistics
Matches: 68, Mismatches: 17, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
27 15 0.22
28 23 0.34
29 30 0.44
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.28
Consensus pattern (27 bp):
ATATAATAAGATTTGGCCTAATGGGCC
Found at i:50143564 original size:29 final size:28
Alignment explanation
Indices: 50143536--50143637 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
50143526 ATATGATTTG
50143536 GGCCTAATGGGCCATATG-ATAAGAATTT
1 GGCCTAATGGGCCATATGAATAAGAA-TT
* * * *
50143564 GGCCTAGTGGGCCATAAGAATATGAACTG
1 GGCCTAATGGGCCATATGAATAAGAA-TT
* *
50143593 GGCCAAATGGGCCATTTGAATAAG-ATT
1 GGCCTAATGGGCCATATGAATAAGAATT
*
50143620 GGCCTAGTGGGCCATATG
1 GGCCTAATGGGCCATATG
50143638 CATGTATGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
27 16 0.27
28 17 0.29
29 26 0.44
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (28 bp):
GGCCTAATGGGCCATATGAATAAGAATT
Found at i:50143595 original size:57 final size:56
Alignment explanation
Indices: 50143525--50143635 Score: 161
Period size: 57 Copynumber: 2.0 Consensus size: 56
50143515 GCATGAATAT
** *
50143525 AATATGATTTGGGCCTAATGGGCCATATG-ATAAGAATTTGGCCTAGTGGGCCATAAG
1 AATATGAACTGGGCCAAATGGGCCATATGAATAAG-A-TTGGCCTAGTGGGCCATAAG
*
50143582 AATATGAACTGGGCCAAATGGGCCATTTGAATAAGATTGGCCTAGTGGGCCATA
1 AATATGAACTGGGCCAAATGGGCCATATGAATAAGATTGGCCTAGTGGGCCATA
50143636 TGCATGTATG
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
56 18 0.37
57 26 0.53
58 5 0.10
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (56 bp):
AATATGAACTGGGCCAAATGGGCCATATGAATAAGATTGGCCTAGTGGGCCATAAG
Found at i:50148067 original size:29 final size:29
Alignment explanation
Indices: 50148001--50148073 Score: 69
Period size: 29 Copynumber: 2.5 Consensus size: 29
50147991 GCATGAATAT
* *
50148001 AATATG-ATTTGGGCCTAATAGGCCGTATG
1 AATATGAATTT-GGCCTAATAGGCCATAAG
* *
50148030 AATGA-GAATTTGGCCTAGTGGGCCATAAG
1 AAT-ATGAATTTGGCCTAATAGGCCATAAG
*
50148059 AATATGAATTGGGCC
1 AATATGAATTTGGCC
50148074 AGATCAGCCA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
28 1 0.03
29 30 0.83
30 5 0.14
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
AATATGAATTTGGCCTAATAGGCCATAAG
Found at i:50151546 original size:39 final size:39
Alignment explanation
Indices: 50151503--50151588 Score: 156
Period size: 39 Copynumber: 2.2 Consensus size: 39
50151493 TATAAAACAA
*
50151503 TAATTGAAAACTAAAAAGCTTCCACTTTAAAATGATTCC
1 TAATTGAAAACTAAAAAGCTTCCACTTTAAAATGATGCC
50151542 TAATTGAAAACTAAAAAGCTTCCACTTTAAAATGATGCC
1 TAATTGAAAACTAAAAAGCTTCCACTTTAAAATGATGCC
50151581 TAA-TGAAA
1 TAATTGAAA
50151589 GTTTCTACCA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
38 5 0.11
39 41 0.89
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.29
Consensus pattern (39 bp):
TAATTGAAAACTAAAAAGCTTCCACTTTAAAATGATGCC
Found at i:50159349 original size:50 final size:50
Alignment explanation
Indices: 50159274--50159373 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
50159264 AGAACTTACC
50159274 CAATTAGGCCTTGAAAGTTTCTTTTCTCTCTCCTAGGGTTTCCATGTGTT
1 CAATTAGGCCTTGAAAGTTTCTTTTCTCTCTCCTAGGGTTTCCATGTGTT
*
50159324 CAATTAGGTCTTGAAAGTTTCTTTTCTCTCTCCTAGGGTTTCCATGTGTT
1 CAATTAGGCCTTGAAAGTTTCTTTTCTCTCTCCTAGGGTTTCCATGTGTT
50159374 TTAGGTTGAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.16, C:0.21, G:0.18, T:0.45
Consensus pattern (50 bp):
CAATTAGGCCTTGAAAGTTTCTTTTCTCTCTCCTAGGGTTTCCATGTGTT
Found at i:50165848 original size:5 final size:5
Alignment explanation
Indices: 50165838--50165866 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
50165828 TATTTATTAT
50165838 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
50165867 TTCACAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:50170300 original size:5 final size:5
Alignment explanation
Indices: 50170290--50170321 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
50170280 TTGTGTGTTC
50170290 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
50170322 TTTCACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:50173732 original size:9 final size:9
Alignment explanation
Indices: 50173720--50173774 Score: 56
Period size: 9 Copynumber: 5.8 Consensus size: 9
50173710 TAAAATTACT
50173720 AAAAATATA
1 AAAAATATA
*
50173729 AAAAATTACAA
1 AAAAA-TA-TA
50173740 AAAAATATA
1 AAAAATATA
*
50173749 AAAAATTATT
1 AAAAA-TATA
*
50173759 AAAAATAAA
1 AAAAATATA
50173768 AAAAATA
1 AAAAATA
50173775 GAAATGTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
9 20 0.53
10 12 0.32
11 6 0.16
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAAATATA
Found at i:50173733 original size:10 final size:10
Alignment explanation
Indices: 50173720--50173774 Score: 60
Period size: 10 Copynumber: 5.7 Consensus size: 10
50173710 TAAAATTACT
50173720 AAAAATATAA
1 AAAAATATAA
* *
50173730 AAAATTACAA
1 AAAAATATAA
50173740 AAAAATATAA
1 AAAAATATAA
* *
50173750 AAAATTAT-T
1 AAAAATATAA
50173759 AAAAATA-AA
1 AAAAATATAA
50173768 AAAAATA
1 AAAAATA
50173775 GAAATGTTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
9 13 0.36
10 23 0.64
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (10 bp):
AAAAATATAA
Found at i:50173735 original size:19 final size:19
Alignment explanation
Indices: 50173711--50173773 Score: 90
Period size: 19 Copynumber: 3.3 Consensus size: 19
50173701 GTATAATTAT
50173711 AAAATTACTAAAAATATAA
1 AAAATTACTAAAAATATAA
*
50173730 AAAATTACAAAAAAATATAA
1 AAAATTAC-TAAAAATATAA
* *
50173750 AAAATTATTAAAAATAAAA
1 AAAATTACTAAAAATATAA
50173769 AAAAT
1 AAAAT
50173774 AGAAATGTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
19 22 0.56
20 17 0.44
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAATTACTAAAAATATAA
Found at i:50174500 original size:13 final size:12
Alignment explanation
Indices: 50174476--50174506 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
50174466 CCGACCGTAT
50174476 TAATTTTTTATA
1 TAATTTTTTATA
50174488 TAA-TTTTTATA
1 TAATTTTTTATA
50174499 TAATTTTT
1 TAATTTTT
50174507 AAATATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TAATTTTTTATA
Found at i:50174513 original size:13 final size:11
Alignment explanation
Indices: 50174480--50174507 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
50174470 CCGTATTAAT
50174480 TTTTTATATAA
1 TTTTTATATAA
50174491 TTTTTATATAA
1 TTTTTATATAA
50174502 TTTTTA
1 TTTTTA
50174508 AATATATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTTATATAA
Found at i:50174663 original size:30 final size:30
Alignment explanation
Indices: 50174629--50174691 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
50174619 ACTTAACAAG
* *
50174629 CAAATTCCGCTAAAATAATAACAAAATTAA
1 CAAATACCGCTAAAATAATAAAAAAATTAA
**
50174659 CAAATACCTTTAAAATAATAAAAAAATTAA
1 CAAATACCGCTAAAATAATAAAAAAATTAA
50174689 CAA
1 CAA
50174692 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.60, C:0.14, G:0.02, T:0.24
Consensus pattern (30 bp):
CAAATACCGCTAAAATAATAAAAAAATTAA
Found at i:50174746 original size:22 final size:22
Alignment explanation
Indices: 50174721--50174763 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
50174711 TATCCAAACA
50174721 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
50174743 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
50174764 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:50178746 original size:24 final size:24
Alignment explanation
Indices: 50178679--50178737 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
50178669 CTGTCAGGAG
*
50178679 AGGATTTAGGAATTGATAAGGGAT
1 AGGATTTAGGAATTGATAAGAGAT
* *
50178703 AGGATTTGGGAGTTGATAAGAGAT
1 AGGATTTAGGAATTGATAAGAGAT
50178727 AGGATTTAGGA
1 AGGATTTAGGA
50178738 CCAGATAAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.29
Consensus pattern (24 bp):
AGGATTTAGGAATTGATAAGAGAT
Found at i:50180262 original size:28 final size:27
Alignment explanation
Indices: 50180169--50180275 Score: 128
Period size: 27 Copynumber: 3.9 Consensus size: 27
50180159 AGGAAACGTC
*
50180169 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
50180196 TTGGTGGCTCTGCCACATATTTCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
50180223 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
50180251 CTGGTGACTCTGTCACATTATCTGT
1 CTGGTGGCTCTGCCACATTATCTGT
50180276 TCTAGCAGCC
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
26 2 0.03
27 50 0.72
28 17 0.25
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:50180275 original size:54 final size:54
Alignment explanation
Indices: 50180169--50180278 Score: 150
Period size: 54 Copynumber: 2.0 Consensus size: 54
50180159 AGGAAACGTC
* * *
50180169 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
50180223 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
50180277 CT
1 CT
50180279 AGCAGCCATG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
54 32 0.65
55 17 0.35
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:50184500 original size:38 final size:38
Alignment explanation
Indices: 50184455--50184595 Score: 185
Period size: 38 Copynumber: 3.7 Consensus size: 38
50184445 GGCTTAAAGA
* * ** *
50184455 CCCGCAGGCTTCATACTGGTAAAATATCCAGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCAGGATAAAT
50184493 CCCGCAGGCTTCGTGCTGGTATTATATCCCA-GATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT-CCAGGATAAAT
**
50184531 CCCGCAGGCTTCGTGCTGGTATTATATCTGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCAGGATAAAT
* *
50184569 CCCGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
50184596 TTGGGCCTTT
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
37 1 0.01
38 88 0.96
39 3 0.03
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCAGGATAAAT
Found at i:50184803 original size:43 final size:43
Alignment explanation
Indices: 50184593--50184790 Score: 324
Period size: 43 Copynumber: 4.6 Consensus size: 43
50184583 GCTGGTATTA
* * *
50184593 TATTTGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
50184636 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
50184679 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCCGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
50184722 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATCTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
50184765 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
50184791 GTAATGCCGG
Statistics
Matches: 146, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 146 1.00
ACGTcount: A:0.11, C:0.26, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:50186868 original size:58 final size:61
Alignment explanation
Indices: 50186792--50186907 Score: 148
Period size: 58 Copynumber: 1.9 Consensus size: 61
50186782 ATCACTTTAA
* ** * * *
50186792 TATTAAATTAATCTAATATTTA-T-CAAGATAAATATTAGATT-AATTTAATATTAAATCT
1 TATTAAAATAATAGAATATTTACTACAAGATAAACATTAAATTAAAATTAATATTAAATCT
50186850 TATTAAAATAATAGAATATTTATCTACAAGATAAACATTAAATTAAAATTAATATTAA
1 TATTAAAATAATAGAATATTTA-CTACAAGATAAACATTAAATTAAAATTAATATTAA
50186908 TATAATCACT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
58 19 0.40
60 1 0.02
61 16 0.33
62 12 0.25
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (61 bp):
TATTAAAATAATAGAATATTTACTACAAGATAAACATTAAATTAAAATTAATATTAAATCT
Found at i:50188168 original size:16 final size:15
Alignment explanation
Indices: 50188139--50188172 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
50188129 GAGAGAAAAT
50188139 ATGTGTGAGAGAGAG
1 ATGTGTGAGAGAGAG
*
50188154 ATGTGTGAAGTGAGAG
1 ATGTGTG-AGAGAGAG
50188170 ATG
1 ATG
50188173 AAAAATGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.32, C:0.00, G:0.44, T:0.24
Consensus pattern (15 bp):
ATGTGTGAGAGAGAG
Found at i:50192319 original size:30 final size:30
Alignment explanation
Indices: 50192283--50192363 Score: 90
Period size: 30 Copynumber: 2.6 Consensus size: 30
50192273 TTCCTATCTC
*
50192283 ACATGCAATTCAACCAGATCATTCCAAAAA
1 ACATGCAATTCAATCAGATCATTCCAAAAA
* * * *
50192313 ACATGCAATTTAATCAAATTATTTCAAAAA
1 ACATGCAATTCAATCAGATCATTCCAAAAA
50192343 ATTCCATGCAATTCAATCAGA
1 A---CATGCAATTCAATCAGA
50192364 GTTATATCAA
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
30 26 0.63
33 15 0.37
ACGTcount: A:0.46, C:0.21, G:0.06, T:0.27
Consensus pattern (30 bp):
ACATGCAATTCAATCAGATCATTCCAAAAA
Found at i:50194176 original size:42 final size:43
Alignment explanation
Indices: 50194053--50194185 Score: 110
Period size: 42 Copynumber: 3.2 Consensus size: 43
50194043 ATTTGGGTTG
** ** *
50194053 ATGAGATCCCGTATAAGACCATATATGGGATATGGTGT-TGAT
1 ATGAGATTTCGTATAAGACCATATATGGGATATGGCATCGGAT
* ** * * **
50194095 ATGAGATTTCGTGTAAGACCACGTTTGGGACATCCCATCGGA-
1 ATGAGATTTCGTATAAGACCATATATGGGATATGGCATCGGAT
* *
50194137 ATGAGATTTCGTATAATACCATATCTGGGATATGGCATC-GAT
1 ATGAGATTTCGTATAAGACCATATATGGGATATGGCATCGGAT
*
50194179 GTGAGAT
1 ATGAGAT
50194186 CCCATGTAAG
Statistics
Matches: 68, Mismatches: 21, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
41 2 0.03
42 64 0.94
43 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (43 bp):
ATGAGATTTCGTATAAGACCATATATGGGATATGGCATCGGAT
Found at i:50194194 original size:84 final size:84
Alignment explanation
Indices: 50194053--50194211 Score: 201
Period size: 84 Copynumber: 1.9 Consensus size: 84
50194043 ATTTGGGTTG
** * ** * *
50194053 ATGAGATCCCGTATAAGACCATATATGGGATATGGTGTTGATATGAGATTTCGTGTAAGACCACG
1 ATGAGATCCCGTATAAGACCATATATGGGATATGGCATCGATATGAGATCCCATGTAAGACCACA
*
50194118 TTTGGGACATCCCATCGGA
66 TCTGGGACATCCCATCGGA
** * * *
50194137 ATGAGATTTCGTATAATACCATATCTGGGATATGGCATCGATGTGAGATCCCATGTAAGACCACA
1 ATGAGATCCCGTATAAGACCATATATGGGATATGGCATCGATATGAGATCCCATGTAAGACCACA
50194202 TCTGGGACAT
66 TCTGGGACAT
50194212 GGCATTGGCA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
84 62 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (84 bp):
ATGAGATCCCGTATAAGACCATATATGGGATATGGCATCGATATGAGATCCCATGTAAGACCACA
TCTGGGACATCCCATCGGA
Found at i:50198379 original size:50 final size:50
Alignment explanation
Indices: 50198201--50198446 Score: 271
Period size: 49 Copynumber: 4.9 Consensus size: 50
50198191 ATCTATTGTG
*
50198201 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
50198251 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * ** **
50198301 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
50198351 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTATCAGATAATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
** * * * * * *
50198401 -GGTTGCATGTGTATTACTAACTGCTGGCTACTATGCGTACCAGATA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
50198447 GCTTTGGCTA
Statistics
Matches: 163, Mismatches: 31, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
49 78 0.48
50 48 0.29
51 37 0.23
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:50199478 original size:38 final size:38
Alignment explanation
Indices: 50199427--50199632 Score: 151
Period size: 38 Copynumber: 4.9 Consensus size: 38
50199417 ATGAAAAAAT
*
50199427 GTGGTGCTAAGTGGATATACCACGGTTATACGTGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
*
50199465 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGTAAC
* *
50199513 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------TAAC
* * *
50199560 GTGATGCTAAGTGGATATACCATGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* * *
50199598 ATGGTGCTAAGTGGATATGCCACGATTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGT
50199633 TAATTTGAAG
Statistics
Matches: 133, Mismatches: 17, Indels: 36
0.72 0.09 0.19
Matches are distributed among these distances:
38 57 0.43
39 2 0.02
40 4 0.03
41 2 0.02
44 2 0.02
45 3 0.02
47 30 0.23
48 33 0.25
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
Found at i:50199587 original size:47 final size:48
Alignment explanation
Indices: 50199454--50199592 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
50199444 TACCACGGTT
* *
50199454 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* *
50199502 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* * * *
50199550 ATTCAT-TAACGTGATGCTAAGTGGATATACCATGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACAT
50199593 GTAACATGGT
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 32 0.40
48 49 0.60
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
Done.