Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 151 of 284
Found at i:50533617 original size:18 final size:18
Alignment explanation
Indices: 50533594--50533628 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50533584 CACTAACATG
* *
50533594 AAAATGTAATGATAATAA
1 AAAATGCAATGAAAATAA
50533612 AAAATGCAATGAAAATA
1 AAAATGCAATGAAAATA
50533629 TATACTTATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.03, G:0.11, T:0.23
Consensus pattern (18 bp):
AAAATGCAATGAAAATAA
Found at i:50535084 original size:21 final size:22
Alignment explanation
Indices: 50535033--50535084 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 22
50535023 TGAAAATGAA
50535033 ATATGGATGTGTCATGATTATTG
1 ATAT-GATGTGTCATGATTATTG
*
50535056 ATAT-ATGTG-CATGGTTATTCG
1 ATATGATGTGTCATGATTATT-G
50535077 A-ATGATGT
1 ATATGATGT
50535085 CCGGGCTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 11 0.42
21 11 0.42
23 4 0.15
ACGTcount: A:0.27, C:0.06, G:0.25, T:0.42
Consensus pattern (22 bp):
ATATGATGTGTCATGATTATTG
Found at i:50535141 original size:40 final size:40
Alignment explanation
Indices: 50535084--50535264 Score: 238
Period size: 40 Copynumber: 4.5 Consensus size: 40
50535074 TCGAATGATG
* *
50535084 TCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATA
1 TCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACTATA
* * * * *
50535124 TCCGGACTGAGATCCGAAGGCATTTGTGCGAGTTG-CTATA
1 TCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACTATA
* * *
50535164 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATA
1 TCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACTATA
* *
50535204 TCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATA
1 TCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACTATA
50535244 TCCGGGCTAAGACCCGAAGGC
1 TCCGGGCTAAGACCCGAAGGC
50535265 CTTGTGCGAG
Statistics
Matches: 120, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 117 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACTATA
Found at i:50535221 original size:80 final size:79
Alignment explanation
Indices: 50535084--50535300 Score: 260
Period size: 80 Copynumber: 2.7 Consensus size: 79
50535074 TCGAATGATG
* * * *
50535084 TCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTGAGAT-CCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGACTAAG-TCCCGAAGGCATT
* *
50535148 TGTGCGAGTTG-CTATA
64 TATGCGAG-TGACCATA
* *
50535164 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAGGCATTT
*
50535229 ATGCTAGTGACCATA
65 ATGCGAGTGACCATA
* * * *
50535244 TCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GACTAAATCCCGAAG
1 TCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAG
50535301 ATACTTGGGT
Statistics
Matches: 119, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
78 13 0.11
79 20 0.17
80 86 0.72
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAGGCATTTA
TGCGAGTGACCATA
Found at i:50538330 original size:40 final size:40
Alignment explanation
Indices: 50538298--50538649 Score: 488
Period size: 40 Copynumber: 8.8 Consensus size: 40
50538288 CCAGCATGAT
* * * *
50538298 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
50538338 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50538378 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
50538418 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
50538458 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
50538498 TGCTCTTCGGGATTTAGCCCGGATACATCACTAGAACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
50538538 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*** *
50538578 TGCTCTTCCAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
50538618 TGCTCTTCGGGATTTAGCCCGGACATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
50538650 CTCAATTCTC
Statistics
Matches: 277, Mismatches: 35, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 277 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:50539962 original size:37 final size:37
Alignment explanation
Indices: 50539919--50540023 Score: 174
Period size: 37 Copynumber: 2.8 Consensus size: 37
50539909 GCTCGGACGT
* *
50539919 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
50539956 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
50539993 AATCTCCACACGTAGTCATCGGGTCTCACCC
1 AATCTCCACACGTAGTCATCGGGTCTTACCC
50540024 AGAATATATT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:50540241 original size:47 final size:47
Alignment explanation
Indices: 50540189--50540399 Score: 296
Period size: 47 Copynumber: 4.5 Consensus size: 47
50540179 TTTCACACTA
* * * ** * *
50540189 GCCATTCGGCTTTACCGCATATATGCATTTTCATATTCAGCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
50540236 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
50540283 GTCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * *
50540330 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
50540377 GCCATTCGGCCTTACCACATATA
1 GCCATTCGGCCTTATCACATATA
50540400 CATATCTCAT
Statistics
Matches: 147, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 147 1.00
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:50540440 original size:48 final size:48
Alignment explanation
Indices: 50540370--50540899 Score: 702
Period size: 48 Copynumber: 10.7 Consensus size: 48
50540360 TCATATTCAC
* * *
50540370 CACATTGGCCATTCGGCCTTACCACATATACATATCTCATATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACATATATATTT
* *
50540418 CACATTAACCATTCGGCTTTACCACATATACATATCACACATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACATATATATTT
50540466 CACATTAGCCATTCGGCTTTACCACATATACATATCCACATATACATATCTCAT
1 CACATTAGCCATTCGGCTTTACCACATATACATAT-CACATAT--ATAT-T--T
* * *
50540520 ACATATTTCACATTCGCCATTCGGCTTCACCACATATACATATCACACATATATTT
1 -CACA-TT---A---GCCATTCGGCTTTACCACATATACATATCACATATATATTT
* *
50540576 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACATATATATTT
* * *
50540624 TACATTCA-CCATTCGGCTTTACCACATATACATATAACACATATATTT
1 CACATT-AGCCATTCGGCTTTACCACATATACATATCACATATATATTT
*
50540672 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACATATATATTT
*
50540720 CACATTAGCCATTCGGCTTTACACACATATACATATCTCATATATATTT
1 CACATTAGCCATTCGGCTTTAC-CACATATACATATCACATATATATTT
* *
50540769 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACATATATATTT
* * *
50540817 CACATTCGCCATTCGGCTTCACCACATATACATATCACACATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCACATATATATTT
* * *
50540865 CACATTAGCCATTCGGCTTCACCACACATATATAT
1 CACATTAGCCATTCGGCTTTACCACATATACATAT
50540900 ATTTATCTTG
Statistics
Matches: 432, Mismatches: 33, Indels: 34
0.87 0.07 0.07
Matches are distributed among these distances:
47 1 0.00
48 319 0.74
49 55 0.13
51 5 0.01
52 1 0.00
54 3 0.01
55 6 0.01
56 3 0.01
58 1 0.00
59 5 0.01
61 6 0.01
62 27 0.06
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
CACATTAGCCATTCGGCTTTACCACATATACATATCACATATATATTT
Found at i:50540506 original size:14 final size:14
Alignment explanation
Indices: 50540487--50540515 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
50540477 TTCGGCTTTA
50540487 CCACATATACATAT
1 CCACATATACATAT
50540501 CCACATATACATAT
1 CCACATATACATAT
50540515 C
1 C
50540516 TCATACATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.31, G:0.00, T:0.28
Consensus pattern (14 bp):
CCACATATACATAT
Found at i:50540512 original size:62 final size:62
Alignment explanation
Indices: 50540439--50540572 Score: 214
Period size: 62 Copynumber: 2.1 Consensus size: 62
50540429 TTCGGCTTTA
* *
50540439 CCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCACCACATATACATAT
* * *
50540501 CCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTCACCACATATACATAT
1 CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCACCACATATACATAT
50540563 CACACATATA
1 C-CACATATA
50540573 TTTCACATTA
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
62 58 0.88
63 8 0.12
ACGTcount: A:0.35, C:0.29, G:0.04, T:0.31
Consensus pattern (62 bp):
CCACATATACATATCACACACATATTTCACATTAGCCATTCGGCTTCACCACATATACATAT
Found at i:50540790 original size:193 final size:199
Alignment explanation
Indices: 50540370--50540899 Score: 804
Period size: 193 Copynumber: 2.7 Consensus size: 199
50540360 TCATATTCAC
* * * *
50540370 CACATTGGCCATTCGGCCTTACCACATATACATATCTCATATATATTTCACATTAACCATTCGGC
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCACCATTCGGC
50540435 TTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
66 TTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
50540500 TCCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTCACCACATATACATATCA
131 T-C-C--ATACA-A-CTCATA-ATATTTCACATTAGCCATTCGGCTTCACCACATATACATATCA
50540565 CACATATATTT
189 CACATATATTT
*
50540576 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTTACATTCACCATTCGGC
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCACCATTCGGC
*
50540641 TTTACCACATATACATATAACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
66 TTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* * *
50540706 T-C-T-C-A-T-AT-ATATTTCACATTAGCCATTCGGCTTTACACACATATACATATCTCATATA
131 TCCATACAACTCATAATATTTCACATTAGCCATTCGGCTTCAC-CACATATACATATCACACATA
50540764 TATTT
195 TATTT
*
50540769 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCGGC
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCACCATTCGGC
* * * *
50540834 TTCACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTCACCACACATATATA
66 TTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
50540899 T
131 T
50540900 ATTTATCTTG
Statistics
Matches: 306, Mismatches: 17, Indels: 15
0.91 0.05 0.04
Matches are distributed among these distances:
192 26 0.08
193 148 0.48
194 2 0.01
195 1 0.00
197 1 0.00
199 1 0.00
200 1 0.00
203 1 0.00
206 125 0.41
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (199 bp):
CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCACCATTCGGC
TTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
TCCATACAACTCATAATATTTCACATTAGCCATTCGGCTTCACCACATATACATATCACACATAT
ATTT
Found at i:50548310 original size:40 final size:40
Alignment explanation
Indices: 50548250--50548433 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
50548240 TATTCGAATG
* * *
50548250 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGACTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
50548290 ATATCCGGACTGAGATCCGAAAGCATTTGTGCGAGTTG-CT
1 ATATCCGGACTAAGACCCGAAGGCATTTATGCTAG-TGACT
* * *
50548330 ATATCC-GAGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGA-CTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
50548370 ATATCCGGGCTAAGTCCCGAAGGCATCTATGCTAGTGACC
1 ATATCCGGACTAAGACCCGAAGGCATTTATGCTAGTGACT
*
50548410 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGACTAAGACCCGAAGGC
50548434 CTTGTGCGAG
Statistics
Matches: 118, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 112 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGACTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:50548390 original size:80 final size:79
Alignment explanation
Indices: 50548250--50548468 Score: 237
Period size: 80 Copynumber: 2.8 Consensus size: 79
50548240 TATTCGAATG
* * * *
50548250 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTGAGAT-CCGAAAGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGACTAAG-TCCCGAAAGC
* * *
50548314 ATTTGTGCGAGTTG-CT
64 ATCTATGCGAG-TGACC
* * * *
50548330 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAAGCA
*
50548395 TCTATGCTAGTGACC
65 TCTATGCGAGTGACC
* * * *
50548410 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GACTAAATCCCGAA
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAA
50548469 GATACTTGGG
Statistics
Matches: 117, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
78 12 0.10
79 20 0.17
80 85 0.73
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAAGCAT
CTATGCGAGTGACC
Found at i:50553237 original size:22 final size:22
Alignment explanation
Indices: 50553195--50553238 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
50553185 GAAAATAATC
* *
50553195 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAACTAATTAT
*
50553217 AAAATTAATTAAAACTAATTAT
1 AAAATTAATCAAAACTAATTAT
50553239 GTTAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATCAAAACTAATTAT
Found at i:50554492 original size:5 final size:5
Alignment explanation
Indices: 50554459--50554486 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
50554449 GCATTGGAAC
50554459 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
50554487 ACTTTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:50558286 original size:49 final size:49
Alignment explanation
Indices: 50558224--50558346 Score: 135
Period size: 49 Copynumber: 2.5 Consensus size: 49
50558214 GCCGCTGACG
* * *
50558224 TGTCCCAAACATGGTCTTACGCTGGCTATC-TCCAT-CGAGGCTGATGCCA
1 TGTCCCAGACATGGTCTTACACTAGCTATCGTCCATACG-GGCTGATG-CA
* * ** *
50558273 TGTCCCAGACATGGTTTTACACTAGCTCTCGTGTATACGTGCTGATGCA
1 TGTCCCAGACATGGTCTTACACTAGCTATCGTCCATACGGGCTGATGCA
50558322 TGTCCCAGACAT-GTCTTACACTAGC
1 TGTCCCAGACATGGTCTTACACTAGC
50558347 ACGAAACTTA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
48 12 0.19
49 39 0.62
50 10 0.16
51 2 0.03
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.29
Consensus pattern (49 bp):
TGTCCCAGACATGGTCTTACACTAGCTATCGTCCATACGGGCTGATGCA
Found at i:50558418 original size:91 final size:93
Alignment explanation
Indices: 50558316--50558530 Score: 244
Period size: 93 Copynumber: 2.3 Consensus size: 93
50558306 TATACGTGCT
50558316 GATGCATGTCCCAGACATGTCTTACACTAGCACGAAACT-TA-GCCAA-TGCATGCCCCAGA-CA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACGAAACTCTATGCCAAGT-CATGCCCCAGATCA
50558377 CGTCTTACACT-GGCTAACATCAT-CAAGGCC
65 CGTCTTACA-TGGGCTAACATCATGC-A-GCC
* ** * * * ***
50558407 GATGCATGTCCCAGACATGTCTTACACTGGCACTCACCTCTATGCGAAGTCATGTCCCAGATGTG
1 GATGCATGTCCCAGACATGTCTTACACTAGCACGAAACTCTATGCCAAGTCATGCCCCAGATCAC
* * *
50558472 GTCTTACATGGGCTATCATGATGCAGCT
66 GTCTTACATGGGCTAACATCATGCAGCC
50558500 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
50558531 CCTCGTCTCA
Statistics
Matches: 105, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
91 35 0.33
92 2 0.02
93 47 0.45
94 20 0.19
95 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (93 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACGAAACTCTATGCCAAGTCATGCCCCAGATCAC
GTCTTACATGGGCTAACATCATGCAGCC
Found at i:50558555 original size:47 final size:45
Alignment explanation
Indices: 50558266--50558571 Score: 167
Period size: 47 Copynumber: 6.5 Consensus size: 45
50558256 CATCGAGGCT
* * * * *
50558266 GATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCGTGTATACGTGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTA-A--TGCC
** * *
50558316 GATGCATGTCCCAGACATGTCTTACACTAGCACGAAACTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTAATGCC
* * * * *
50558360 AATGCATGCCCCAGACACGTCTTACACTGGCTAACATCATC-AAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGC--AC-TCATCTAATGCC
*
50558407 GATGCATGTCCCAGACATGTCTTACACTGGCACTCACCTCT-ATG-C
1 GATGCATGTCCCAGACATGTCTTACACTAGCACTCA--TCTAATGCC
* ** ** *
50558452 GAAGTCATGTCCCAGATGTGGTCTTACA-T-GGGCT-ATCATGATGCAGC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATC-TAATGC--C
* *
50558499 TGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCC
1 -GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCT-AATGCC
* *
50558546 GATGCCATGTCTCAGATATGGTCTTA
1 GATG-CATGTCCCAGACAT-GTCTTA
50558572 TACTGGCTCT
Statistics
Matches: 200, Mismatches: 35, Indels: 44
0.72 0.13 0.16
Matches are distributed among these distances:
42 2 0.01
43 1 0.00
44 36 0.18
45 9 0.05
46 32 0.16
47 69 0.34
48 27 0.14
49 20 0.10
50 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTAATGCC
Found at i:50560632 original size:26 final size:27
Alignment explanation
Indices: 50560594--50560676 Score: 141
Period size: 26 Copynumber: 3.1 Consensus size: 27
50560584 CCTTGGAGTT
50560594 AGTTTATTTTGAAAGTGTATGTATATA
1 AGTTTATTTTGAAAGTGTATGTATATA
*
50560621 A-TTTATTTTGAAAGTGCATGTATATA
1 AGTTTATTTTGAAAGTGTATGTATATA
50560647 TAGTTTATTTTGAAAGTGTATGTATATA
1 -AGTTTATTTTGAAAGTGTATGTATATA
50560675 AG
1 AG
50560677 CCATGAGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.46
27 4 0.08
28 24 0.46
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (27 bp):
AGTTTATTTTGAAAGTGTATGTATATA
Found at i:50568344 original size:55 final size:55
Alignment explanation
Indices: 50568244--50568347 Score: 131
Period size: 55 Copynumber: 1.9 Consensus size: 55
50568234 TTAAGGATAC
* * *
50568244 CATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTTTAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGACATGACAATTGATAAGGTTTATAAGGCAAGGAAAT
* *
50568299 CATGTAAGACCATGTCAAGACATGGC-ATTGATAA-GTTACTATAAGGCAA
1 CATGTAAGACCATGCCAAGACATGACAATTGATAAGGTT--TATAAGGCAA
50568348 AGGTCCCATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
53 3 0.07
54 7 0.17
55 32 0.76
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (55 bp):
CATGTAAGACCATGCCAAGACATGACAATTGATAAGGTTTATAAGGCAAGGAAAT
Found at i:50578071 original size:23 final size:23
Alignment explanation
Indices: 50578043--50578099 Score: 114
Period size: 23 Copynumber: 2.5 Consensus size: 23
50578033 ATATATTTTC
50578043 ACCAAATAACCAAGTACACAAGT
1 ACCAAATAACCAAGTACACAAGT
50578066 ACCAAATAACCAAGTACACAAGT
1 ACCAAATAACCAAGTACACAAGT
50578089 ACCAAATAACC
1 ACCAAATAACC
50578100 CTTTCATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.53, C:0.28, G:0.07, T:0.12
Consensus pattern (23 bp):
ACCAAATAACCAAGTACACAAGT
Found at i:50578092 original size:15 final size:14
Alignment explanation
Indices: 50578051--50578093 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
50578041 TCACCAAATA
50578051 ACCAAGTACACAAGT
1 ACCAAGTAC-CAAGT
*
50578066 ACCAAATAACCAAGT
1 ACCAAGT-ACCAAGT
50578081 ACACAAGTACCAA
1 AC-CAAGTACCAA
50578094 ATAACCCTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 18 0.75
16 6 0.25
ACGTcount: A:0.51, C:0.28, G:0.09, T:0.12
Consensus pattern (14 bp):
ACCAAGTACCAAGT
Found at i:50578693 original size:15 final size:15
Alignment explanation
Indices: 50578673--50578709 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
50578663 CCAAGGGAAG
50578673 TATATGGGTGCAAGT
1 TATATGGGTGCAAGT
50578688 TATATGGGTGCAAGT
1 TATATGGGTGCAAGT
50578703 TATATGG
1 TATATGG
50578710 ATGCTAGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.27, C:0.05, G:0.32, T:0.35
Consensus pattern (15 bp):
TATATGGGTGCAAGT
Found at i:50584073 original size:16 final size:16
Alignment explanation
Indices: 50584048--50584090 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
50584038 GTAGATCGAC
*
50584048 AAAAGTCGAAATGCCG
1 AAAAGTCGAAATGACG
* *
50584064 AAAAGCCGAAATGATG
1 AAAAGTCGAAATGACG
50584080 AAAAGTCGAAA
1 AAAAGTCGAAA
50584091 GTTTGGTTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.51, C:0.14, G:0.23, T:0.12
Consensus pattern (16 bp):
AAAAGTCGAAATGACG
Found at i:50584333 original size:28 final size:29
Alignment explanation
Indices: 50584302--50584362 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
50584292 GTGAGCAAGA
50584302 ATAT-AAGGTGATTTGGGCCTAACGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
* *
50584330 ATATAAAGTTGATTTGGGCCTAATGGGCC
1 ATATAAAGGTGATTTGGGCCTAACGGGCC
50584359 ATAT
1 ATAT
50584363 GAATATGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 4 0.13
29 26 0.87
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (29 bp):
ATATAAAGGTGATTTGGGCCTAACGGGCC
Found at i:50584412 original size:28 final size:26
Alignment explanation
Indices: 50584314--50584418 Score: 93
Period size: 29 Copynumber: 3.7 Consensus size: 26
50584304 ATAAGGTGAT
* *
50584314 TTGGGCCTAACGGGCCATATAAAGTTGAT
1 TTGGGCC-AATGGGCCATATAAA--TGAA
50584343 TTGGGCCTAATGGGCCATATGAATATGAA
1 TTGGGCC-AATGGGCCATAT-AA-ATGAA
* **
50584372 TTAGGCTGATGGGCCATATAAATGAGA
1 TTGGGCCAATGGGCCATATAAATGA-A
50584399 TTGGGCCAAGTGGGCCATAT
1 TTGGGCCAA-TGGGCCATAT
50584419 GCATGTATGT
Statistics
Matches: 64, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
26 4 0.06
27 9 0.14
28 21 0.33
29 27 0.42
30 2 0.03
31 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.27
Consensus pattern (26 bp):
TTGGGCCAATGGGCCATATAAATGAA
Found at i:50590012 original size:11 final size:11
Alignment explanation
Indices: 50589996--50590021 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
50589986 CGAAGCCCAC
50589996 ATCACAATAAT
1 ATCACAATAAT
50590007 ATCACAATAAT
1 ATCACAATAAT
50590018 ATCA
1 ATCA
50590022 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:50590501 original size:27 final size:27
Alignment explanation
Indices: 50590471--50591052 Score: 392
Period size: 27 Copynumber: 21.6 Consensus size: 27
50590461 TACACTACAA
*
50590471 GGGTATTTCGATAATTTTACAAATTAG
1 GGGTATTTCGATAATTTTACAAATTCG
* * *
50590498 GGGTGTTTCGGTAATTTAACAAATT-G
1 GGGTATTTCGATAATTTTACAAATTCG
50590524 AGGGTATTTC-AGTAATTTTACAAATT-G
1 -GGGTATTTCGA-TAATTTTACAAATTCG
* * *
50590551 AGGGTGTTT-TAGTAATTTTAC-AACTCG
1 -GGGTATTTCGA-TAATTTTACAAATTCG
* *
50590578 TGGGTGTTTCGGTAATTTTACAAA-TCG
1 -GGGTATTTCGATAATTTTACAAATTCG
* *
50590605 AGGGTGTTTC-AGTAATTTCACAAA-TCGG
1 -GGGTATTTCGA-TAATTTTACAAATTC-G
50590633 GGGTATTTCGATAATTTTACAAA-TCG
1 GGGTATTTCGATAATTTTACAAATTCG
*
50590659 AGGGTATTTC-AGTAATTTCACAAA--CG
1 -GGGTATTTCGA-TAATTTTACAAATTCG
* * * * * *
50590685 AGGGTATTTTGGTAATTTTA-GACTACAA
1 -GGGTATTTCGATAATTTTACAAATTC-G
*
50590713 GGGTATTTTGATAATTTTACAAA-TCGG
1 GGGTATTTCGATAATTTTACAAATTC-G
* *
50590740 GGGTGTTTCGATAATTTTACAAA-TCAA
1 GGGTATTTCGATAATTTTACAAATTC-G
* *
50590767 GGGTATTTTTG-TGATTTTACAAA-TCG
1 GGGTA-TTTCGATAATTTTACAAATTCG
50590793 AGGGTATTTCGATAATTTTACAAATT-G
1 -GGGTATTTCGATAATTTTACAAATTCG
* *
50590820 AGGGTGTTT-TAGTAATTTTACAAA-TCGG
1 -GGGTATTTCGA-TAATTTTACAAATTC-G
*
50590848 GGGTATTTCGATAATTTTACAAATTGG
1 GGGTATTTCGATAATTTTACAAATTCG
*
50590875 GGGTGTTTCGATAATTTTACAAA-TCG
1 GGGTATTTCGATAATTTTACAAATTCG
50590901 AGGGTATTTCTG-TAATTTTACAAA-TCG
1 -GGGTATTTC-GATAATTTTACAAATTCG
* *
50590928 AGGGTATTTCAATAATTTCAC-AA-TCG
1 -GGGTATTTCGATAATTTTACAAATTCG
*
50590954 AGGGTATTTCGGTAATTTTACAAA-TCG
1 -GGGTATTTCGATAATTTTACAAATTCG
* *
50590981 GGAGTATTTTGGTAATTTTACAAA-TCG
1 GG-GTATTTCGATAATTTTACAAATTCG
** * * *
50591008 AGGGTGCTTAGGTAATTTTACAAACT-G
1 -GGGTATTTCGATAATTTTACAAATTCG
*
50591035 AGGGTATTTCGGTAATTT
1 -GGGTATTTCGATAATTT
50591053 CTCTTTATTA
Statistics
Matches: 464, Mismatches: 59, Indels: 64
0.79 0.10 0.11
Matches are distributed among these distances:
25 1 0.00
26 57 0.12
27 389 0.84
28 17 0.04
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATTCG
Found at i:50590533 original size:54 final size:55
Alignment explanation
Indices: 50590470--50591052 Score: 599
Period size: 54 Copynumber: 10.8 Consensus size: 55
50590460 TTACACTACA
* * * * *
50590470 AGGGTATTTCGATAATTTTACAAATTAG-GGGTGTTTCGGTAATTTAACAAATTG
1 AGGGTATTTCGATAATTTTACAAATTCGAGGGTATTTCAGTAATTTTACAAATCG
* * *
50590524 AGGGTATTTC-AGTAATTTTACAAATT-GAGGGTGTTTTAGTAATTTTACAACTCG
1 AGGGTATTTCGA-TAATTTTACAAATTCGAGGGTATTTCAGTAATTTTACAAATCG
* * * * *
50590578 TGGGTGTTTCGGTAATTTTACAAA-TCGAGGGTGTTTCAGTAATTTCACAAATCG
1 AGGGTATTTCGATAATTTTACAAATTCGAGGGTATTTCAGTAATTTTACAAATCG
* *
50590632 GGGGTATTTCGATAATTTTACAAA-TCGAGGGTATTTCAGTAATTTCACAAA-CG
1 AGGGTATTTCGATAATTTTACAAATTCGAGGGTATTTCAGTAATTTTACAAATCG
* * * * * * *
50590685 AGGGTATTTTGGTAATTTTA-GACTACAAGGGTATTT-TGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATTCGAGGGTATTTCAG-TAATTTTACAAATCG
* * * ** *
50590739 GGGGTGTTTCGATAATTTTACAAA-TCAAGGGTATTTTTGTGATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATTCGAGGGTATTTCAGTAATTTTACAAATCG
* *
50590793 AGGGTATTTCGATAATTTTACAAATT-GAGGGTGTTTTAGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATTCGAGGGTATTTCAGTAATTTTACAAATCG
* * *
50590847 GGGGTATTTCGATAATTTTACAAATT-GGGGGTGTTTC-GATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATTCGAGGGTATTTCAG-TAATTTTACAAATCG
* *
50590901 AGGGTATTTCTG-TAATTTTACAAA-TCGAGGGTATTTCAATAATTTCAC-AATCG
1 AGGGTATTTC-GATAATTTTACAAATTCGAGGGTATTTCAGTAATTTTACAAATCG
* **
50590954 AGGGTATTTCGGTAATTTTACAAA-TCG-GGAGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATTCGAGG-GTATTTCAGTAATTTTACAAATCG
** * * * *
50591008 AGGGTGCTTAGGTAATTTTACAAACT-GAGGGTATTTCGGTAATTT
1 AGGGTATTTCGATAATTTTACAAATTCGAGGGTATTTCAGTAATTT
50591053 CTCTTTATTA
Statistics
Matches: 456, Mismatches: 54, Indels: 38
0.83 0.10 0.07
Matches are distributed among these distances:
52 5 0.01
53 89 0.20
54 354 0.78
55 8 0.02
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (55 bp):
AGGGTATTTCGATAATTTTACAAATTCGAGGGTATTTCAGTAATTTTACAAATCG
Found at i:50590592 original size:81 final size:82
Alignment explanation
Indices: 50590476--50591052 Score: 592
Period size: 81 Copynumber: 7.1 Consensus size: 82
50590466 TACAAGGGTA
* * *
50590476 TTTCGATAATTTTACAAAT-TAGGGGTGTTTCGGTAATTTAACAAATTGAGGGTATTTCAGTAAT
1 TTTCGATAATTTTACAAATCGA-GGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAAT
*
50590540 TTTACAAATTGAGGGTGT
65 TTTACAAATCGAGGGTGT
* * * *
50590558 TTTAG-TAATTTTACAACTCGTGGGTGTTTCGGTAATTTTACAAATCGAGGGTGTTTCAGTAATT
1 TTTCGATAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATT
*
50590622 TCACAAATCG-GGG-GT
66 TTACAAATCGAGGGTGT
* * * **
50590637 ATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAA-CGAGGGTATTTTGGTAAT
1 -TTTCGATAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAAT
* * * *
50590701 TTTA-GACTACAAGGGTAT
65 TTTACAAAT-CGAGGGTGT
* * * ** *
50590719 TTT-GATAATTTTACAAATCGGGGGTGTTTCGATAATTTTACAAATCAAGGGTATTTTTGTGATT
1 TTTCGATAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATT
*
50590783 TTACAAATCGAGGGT-A
66 TTACAAATCGAGGGTGT
* ** *
50590799 TTTCGATAATTTTACAAATTGAGGGTGTTTTAGTAATTTTACAAATCGGGGGTATTTC-GATAAT
1 TTTCGATAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCAG-TAAT
* *
50590863 TTTACAAATTGGGGGTG-
65 TTTACAAATCGAGGGTGT
* * *
50590880 TTTCGATAATTTTACAAATCGAGGGTATTTCTGTAATTTTACAAATCGAGGGTATTTCAATAATT
1 TTTCGATAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATT
* *
50590945 TCAC-AATCGAGGGT-A
66 TTACAAATCGAGGGTGT
* * * **
50590960 TTTCGGTAATTTTACAAATCG-GGAGTATTTTGGTAATTTTACAAATCGAGGGTGCTT-AGGTAA
1 TTTCGATAATTTTACAAATCGAGG-GTGTTTCGGTAATTTTACAAATCGAGGGTATTTCA-GTAA
*
50591023 TTTTACAAA-CTGAGGGT-A
64 TTTTACAAATC-GAGGGTGT
*
50591041 TTTCGGTAATTT
1 TTTCGATAATTT
50591053 CTCTTTATTA
Statistics
Matches: 416, Mismatches: 62, Indels: 35
0.81 0.12 0.07
Matches are distributed among these distances:
79 7 0.02
80 132 0.32
81 270 0.65
82 7 0.02
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (82 bp):
TTTCGATAATTTTACAAATCGAGGGTGTTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATT
TTACAAATCGAGGGTGT
Found at i:50591405 original size:28 final size:28
Alignment explanation
Indices: 50591374--50591448 Score: 123
Period size: 28 Copynumber: 2.7 Consensus size: 28
50591364 CCCAATTTCG
* *
50591374 TTCACATGGCCCATCGGGCCCAATCACA
1 TTCATATGGCCCATCAGGCCCAATCACA
50591402 TTCATATGGCCCATCAGGCCCAATCACA
1 TTCATATGGCCCATCAGGCCCAATCACA
*
50591430 TTCATATGTCCCATCAGGC
1 TTCATATGGCCCATCAGGC
50591449 TCAACTACTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.25, C:0.36, G:0.16, T:0.23
Consensus pattern (28 bp):
TTCATATGGCCCATCAGGCCCAATCACA
Found at i:50596249 original size:37 final size:37
Alignment explanation
Indices: 50596208--50596281 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
50596198 ACAAGTATCC
50596208 TTTGCCAATGACTGATGACTTGTTATTTTGGGTATGG
1 TTTGCCAATGACTGATGACTTGTTATTTTGGGTATGG
* *
50596245 TTTGCTAATGATTGATGACTTGTTATTTTGGGTATGG
1 TTTGCCAATGACTGATGACTTGTTATTTTGGGTATGG
50596282 ACAGGTTGAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.19, C:0.08, G:0.27, T:0.46
Consensus pattern (37 bp):
TTTGCCAATGACTGATGACTTGTTATTTTGGGTATGG
Found at i:50596811 original size:606 final size:606
Alignment explanation
Indices: 50595659--50596850 Score: 1694
Period size: 606 Copynumber: 2.0 Consensus size: 606
50595649 ATGAATTCGA
* * *
50595659 TGTTATTTTGGGTATGGACTGCTTAACATTGCATTATGCCATAGTAAATTATAATCAGAAAAATA
1 TGTTATTTTGGGTATGGACAGCTTAACACTGCATGATGCCATAGTAAATTATAATCAGAAAAATA
* * * ** * *
50595724 TTAAATTAAAATGTGAAAATGGTGAGGTTCTTTGGGTTGAAGCCGACGAATCAAGATAATTGCCT
66 TTAAATTAAAATGTAAAAATGGTAAGGTTATTCAGGTTGAAACCGACGAATCAAGATAACTGCCT
** * * *
50595789 ATTGTGATTTCATCTGTATCTGCTTAGAAGTATGTAAGGAAATGTTGTGAAGCTTATCTTGCTTA
131 ACAGTGATTTCATCTATATCTGCTCAGAAGTATGTAAGGAAATGTTGTAAAGCTTATCTTGCTTA
* * * *
50595854 TGTGTTGAATACTTAAATGTCTGAATTGAAAATTGAATCAGTGTCGGCAGTCTGTGAATATCTGG
196 TGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCCGACAGTCTGTGAATATCTGG
* *
50595919 ATGTGTTTCCAGAAGAGTTGCCTGGGTTACCTCCAGCCAGAGAAGTGGAGTTTGCTATTGGTTTG
261 ATGTGTTTCCAGAAGAGTTGCCTGGGTTACCTCCAGCCAGAGAAGTGGAGTTTGCTATTGATTAG
* * * *
50595984 TTACCTTGGACTTCACTGATATCGATTACTCCATATAGGATGGCTCCAACTGAATTGAAAGAATT
326 TTACCTAGGACTTCACCGATATCAATTACTCCATACAGGATGGCTCCAACTGAATTGAAAGAATT
* * * *
50596049 GGAAGCTCAGTTGCACAAGTTGACAGATAAGGTTTTTGTGAGACTGAGTTTTTCTCCTTATGGTG
391 GAAAGCTCAGTTGCACAAGTTGACAGATAAGGGTTTTGCGAGACTGAGTTTTTCTCCTTAGGGTG
*
50596114 CTCTAGTATTATTTGTAAAGAATAAAGACAGATCTATAAGACTTTGTATCGATTACCGACAACTC
456 CTCTAGTATTATTTGTAAAGAATAAAGACAGATCAATAAGACTTTGTATCGATTACCGACAACTC
50596179 AACAAGGTGACTATAAAGAACAAGTATCCTTTGCCAATGACTGATGACTTGTTATTTTGGGTATG
521 AACAAGGTGACTATAAAGAACAAGTATCCTTTGCCAATGACTGATGACTTGTTATTTTGGGTATG
50596244 GTTTGCTAATGATTGATGACT
586 GTTTGCTAATGATTGATGACT
* * * *
50596265 TGTTATTTTGGGTATGGACAGGTTGACACTGCATGATGCCATAGTAAATTATAGA-CATAAAACT
1 TGTTATTTTGGGTATGGACAGCTTAACACTGCATGATGCCATAGTAAATTATA-ATCAGAAAAAT
* * * * *
50596329 ATTGAATTGAAGTGTAAAAATGGTAAGGTTATTCAGGTTGAAACTGATGAATCAAG-TGAACTGC
65 ATTAAATTAAAATGTAAAAATGGTAAGGTTATTCAGGTTGAAACCGACGAATCAAGAT-AACTGC
** * * *
50596393 CTACAGTGATTTTGTCTATGTTTGCTCAGAGGTATGTAAGG-AATGGTTGTAAAGCTTATCTTGC
129 CTACAGTGATTTCATCTATATCTGCTCAGAAGTATGTAAGGAAAT-GTTGTAAAGCTTATCTTGC
* * * * *
50596457 TTATGTATTGAATACTAAAATGTTTGAATTGAAAATTGAATCAGTGCCGATAGTCTGTGATTTTT
193 TTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCCGACAGTCTGTGAATATC
* * * * * *
50596522 TGGATGTGTTTCCAGACGAGTTGCTTGGGTTACCT-CTGATCAGAGAGGTTGAGTTTGCTATTGA
258 TGGATGTGTTTCCAGAAGAGTTGCCTGGGTTACCTCCAG-CCAGAGAAGTGGAGTTTGCTATTGA
* * * *
50596586 TGTAG-TACCTAGGACTTCACCGATATCAATTGCTCCGTACAGGATGGCTCCGATTGAATTGAAA
322 T-TAGTTACCTAGGACTTCACCGATATCAATTACTCCATACAGGATGGCTCCAACTGAATTGAAA
** *
50596650 GAATTGAAAGCTCAGTTGCACAAGTTGGTAGATAAGGGTTTTGCGAGATTGAGTTTTTCTCCTTA
386 GAATTGAAAGCTCAGTTGCACAAGTTGACAGATAAGGGTTTTGCGAGACTGAGTTTTTCTCCTTA
* *
50596715 GGGTGCTCTAGTATTATTTGTAAAGAATAAAGA-TGAATCAATTAGACTTTGTATCGATTACCGA
451 GGGTGCTCTAGTATTATTTGTAAAGAATAAAGACAG-ATCAATAAGACTTTGTATCGATTACCGA
* *
50596779 CAGCTCAACAAGGTGACTATAAAGAACAAGTATCCTTTGCCAATGATTGATGACTTGTTATTTTG
515 CAACTCAACAAGGTGACTATAAAGAACAAGTATCCTTTGCCAATGACTGATGACTTGTTATTTTG
50596844 GGTATGG
580 GGTATGG
50596851 ACAGGTTGAC
Statistics
Matches: 514, Mismatches: 66, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
605 7 0.01
606 504 0.98
607 3 0.01
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (606 bp):
TGTTATTTTGGGTATGGACAGCTTAACACTGCATGATGCCATAGTAAATTATAATCAGAAAAATA
TTAAATTAAAATGTAAAAATGGTAAGGTTATTCAGGTTGAAACCGACGAATCAAGATAACTGCCT
ACAGTGATTTCATCTATATCTGCTCAGAAGTATGTAAGGAAATGTTGTAAAGCTTATCTTGCTTA
TGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCCGACAGTCTGTGAATATCTGG
ATGTGTTTCCAGAAGAGTTGCCTGGGTTACCTCCAGCCAGAGAAGTGGAGTTTGCTATTGATTAG
TTACCTAGGACTTCACCGATATCAATTACTCCATACAGGATGGCTCCAACTGAATTGAAAGAATT
GAAAGCTCAGTTGCACAAGTTGACAGATAAGGGTTTTGCGAGACTGAGTTTTTCTCCTTAGGGTG
CTCTAGTATTATTTGTAAAGAATAAAGACAGATCAATAAGACTTTGTATCGATTACCGACAACTC
AACAAGGTGACTATAAAGAACAAGTATCCTTTGCCAATGACTGATGACTTGTTATTTTGGGTATG
GTTTGCTAATGATTGATGACT
Found at i:50597333 original size:569 final size:569
Alignment explanation
Indices: 50596245--50597727 Score: 2696
Period size: 569 Copynumber: 2.6 Consensus size: 569
50596235 TTGGGTATGG
* *
50596245 TTTGCTAATGATTGATGACTTGTTATTTTGGGTATGGACAGGTTGACACTGCATGATGCCATAGT
1 TTTGCCAATGATTGATGACTTGTTATTTTGGGTATGGACAGGTTGACACTGTATGATGCCATAGT
* * *
50596310 AAATTATAGACATAAAACTATTGAATTGAAGTGTAAAAATGGTAAGGTTATTCAGGTTGAAACTG
66 AAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGAGGTTATTCGGGTTGAAACTG
* *
50596375 ATGAATCAAGTGAACTGCCTACAGTGATTTTGTCTATGTTTGCTCAGAGGTATGTAAGGAATGGT
131 ATGAATCAAGTGAATTGCCTACAGTGATTTCGTCTATGTTTGCTCAGAGGTATGTAAGGAATGGT
*
50596440 TGTAAAGCTTATCTTGCTTATGTATTGAATACTAAAATGTTTGAATTGAAAATTGAATCAGTGCC
196 TGTAAAGCTTATCTTGCTTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCC
* * * * * *
50596505 GATAGTCTGTGATTTTTTGGATGTGTTTCCAGACGAGTTGCTTGGGTTACCTCTGATCAGAGAGG
261 GGTAGTCTGTGAGTTTCTGGATGTGTTTCCAAACGAGTTGCCTGGGTTACCTCCGATCAGAGAGG
*
50596570 TTGAGTTTGCTATTGATGTAGTACCTAGGACTTCACCGATATCAATTGCTCCGTACAGGATGGCT
326 TTGAGTTTGCTATTGATATAGTACCTAGGACTTCACCGATATCAATTGCTCCGTACAGGATGGCT
* * * *
50596635 CCGATTGAATTGAAAGAATTGAAAGCTCAGTTGCACAAGTTGGTAGATAAGGGTTTTGCGAGATT
391 CCGACTGAATTGAAAGAATTGAAAGCTCAGTTGCACAAGTTGGCAGATAAAGGTTTTGCGAGACT
* *
50596700 GAGTTTTTCTCCTTAGGGTGCTCTAGTATTATTTGTAAAGAATAAAGATGAATCAATTAGACTTT
456 GAGTTTTTCTCCTTAGGGTGCTCTAGTATTATTTGTAAAGAATAAAGACGAATCAATGAGACTTT
50596765 GTATCGATTACCGACAGCTCAACAAGGTGACTATAAAGAACAAGTATCC
521 GTATCGATTACCGACAGCTCAACAAGGTGACTATAAAGAACAAGTATCC
50596814 TTTGCCAATGATTGATGACTTGTTATTTTGGGTATGGACAGGTTGACACTGTATGATGCCATAGT
1 TTTGCCAATGATTGATGACTTGTTATTTTGGGTATGGACAGGTTGACACTGTATGATGCCATAGT
50596879 AAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGAGGTTATTCGGGTTGAAACTG
66 AAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGAGGTTATTCGGGTTGAAACTG
*
50596944 ATGAATCAAGTGAATTACCTACAGTGATTTCGTCTATGTTTGCTCAGAGGTATGTAAGGAATGGT
131 ATGAATCAAGTGAATTGCCTACAGTGATTTCGTCTATGTTTGCTCAGAGGTATGTAAGGAATGGT
50597009 TGTAAAGCTTATCTTGCTTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCC
196 TGTAAAGCTTATCTTGCTTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCC
*
50597074 GGTAGTCTGTGAGTTTCTGGATGTGTTTCCAAACGAGTTGCCTGGGTTACCTCCGATCAAAGAGG
261 GGTAGTCTGTGAGTTTCTGGATGTGTTTCCAAACGAGTTGCCTGGGTTACCTCCGATCAGAGAGG
* *
50597139 TTGAGTTTGCTATTGATATAGTACCTGGGACTTCACCGATATCAATTGCTCCGTATAGGATGGCT
326 TTGAGTTTGCTATTGATATAGTACCTAGGACTTCACCGATATCAATTGCTCCGTACAGGATGGCT
50597204 CCGACTGAATTGAAAGAATTGAAAGCTCAGTTGCACAAGTTGGCAGATAAAGGTTTTGCGAGACT
391 CCGACTGAATTGAAAGAATTGAAAGCTCAGTTGCACAAGTTGGCAGATAAAGGTTTTGCGAGACT
50597269 GAGTTTTTCTCCTTAGGGTGCTCTAGTATTATTTGTAAAGAATAAAGACGAATCAATGAGACTTT
456 GAGTTTTTCTCCTTAGGGTGCTCTAGTATTATTTGTAAAGAATAAAGACGAATCAATGAGACTTT
*
50597334 GTATCGATTACCGGCAGCTCAACAAGGTGACTATAAAGAACAAGTATCC
521 GTATCGATTACCGACAGCTCAACAAGGTGACTATAAAGAACAAGTATCC
50597383 TTTGCCAATGATTGATGACTTGTTATTTTGGGTATGGACAGGTTGACACTGTATGATGCCATAGT
1 TTTGCCAATGATTGATGACTTGTTATTTTGGGTATGGACAGGTTGACACTGTATGATGCCATAGT
50597448 AAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGAGGTTATTCGGGTTGAAACTG
66 AAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGAGGTTATTCGGGTTGAAACTG
50597513 ATGAATCAAGTGAATTGCCTACAGTGATTTCGTCTATGTTTGCTCAGAGGTATGTAAGGAATGGT
131 ATGAATCAAGTGAATTGCCTACAGTGATTTCGTCTATGTTTGCTCAGAGGTATGTAAGGAATGGT
* * *
50597578 TGTAAAACTGATCTTGCTTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTCCC
196 TGTAAAGCTTATCTTGCTTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCC
*
50597643 GGTAGTCTGTGAGTTTCTAGATGTGTTTCCAAACGAGTTGCCTGGGTTACCTCCGATCAGAGAGG
261 GGTAGTCTGTGAGTTTCTGGATGTGTTTCCAAACGAGTTGCCTGGGTTACCTCCGATCAGAGAGG
50597708 TTGAGTTTGCTATTGATATA
326 TTGAGTTTGCTATTGATATA
50597728 ACACTGTATG
Statistics
Matches: 882, Mismatches: 32, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
569 882 1.00
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.34
Consensus pattern (569 bp):
TTTGCCAATGATTGATGACTTGTTATTTTGGGTATGGACAGGTTGACACTGTATGATGCCATAGT
AAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGAGGTTATTCGGGTTGAAACTG
ATGAATCAAGTGAATTGCCTACAGTGATTTCGTCTATGTTTGCTCAGAGGTATGTAAGGAATGGT
TGTAAAGCTTATCTTGCTTATGTATTGAATACTAAAATGTCTGAATTGAAAATTGAATCAGTGCC
GGTAGTCTGTGAGTTTCTGGATGTGTTTCCAAACGAGTTGCCTGGGTTACCTCCGATCAGAGAGG
TTGAGTTTGCTATTGATATAGTACCTAGGACTTCACCGATATCAATTGCTCCGTACAGGATGGCT
CCGACTGAATTGAAAGAATTGAAAGCTCAGTTGCACAAGTTGGCAGATAAAGGTTTTGCGAGACT
GAGTTTTTCTCCTTAGGGTGCTCTAGTATTATTTGTAAAGAATAAAGACGAATCAATGAGACTTT
GTATCGATTACCGACAGCTCAACAAGGTGACTATAAAGAACAAGTATCC
Found at i:50597970 original size:300 final size:300
Alignment explanation
Indices: 50597428--50598027 Score: 1191
Period size: 300 Copynumber: 2.0 Consensus size: 300
50597418 GGACAGGTTG
50597428 ACACTGTATGATGCCATAGTAAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGA
1 ACACTGTATGATGCCATAGTAAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGA
*
50597493 GGTTATTCGGGTTGAAACTGATGAATCAAGTGAATTGCCTACAGTGATTTCGTCTATGTTTGCTC
66 GGTTATTCGGGTTGAAACTGATGAATCAAGTGAATTACCTACAGTGATTTCGTCTATGTTTGCTC
50597558 AGAGGTATGTAAGGAATGGTTGTAAAACTGATCTTGCTTATGTATTGAATACTAAAATGTCTGAA
131 AGAGGTATGTAAGGAATGGTTGTAAAACTGATCTTGCTTATGTATTGAATACTAAAATGTCTGAA
50597623 TTGAAAATTGAATCAGTCCCGGTAGTCTGTGAGTTTCTAGATGTGTTTCCAAACGAGTTGCCTGG
196 TTGAAAATTGAATCAGTCCCGGTAGTCTGTGAGTTTCTAGATGTGTTTCCAAACGAGTTGCCTGG
50597688 GTTACCTCCGATCAGAGAGGTTGAGTTTGCTATTGATATA
261 GTTACCTCCGATCAGAGAGGTTGAGTTTGCTATTGATATA
50597728 ACACTGTATGATGCCATAGTAAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGA
1 ACACTGTATGATGCCATAGTAAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGA
50597793 GGTTATTCGGGTTGAAACTGATGAATCAAGTGAATTACCTACAGTGATTTCGTCTATGTTTGCTC
66 GGTTATTCGGGTTGAAACTGATGAATCAAGTGAATTACCTACAGTGATTTCGTCTATGTTTGCTC
50597858 AGAGGTATGTAAGGAATGGTTGTAAAACTGATCTTGCTTATGTATTGAATACTAAAATGTCTGAA
131 AGAGGTATGTAAGGAATGGTTGTAAAACTGATCTTGCTTATGTATTGAATACTAAAATGTCTGAA
50597923 TTGAAAATTGAATCAGTCCCGGTAGTCTGTGAGTTTCTAGATGTGTTTCCAAACGAGTTGCCTGG
196 TTGAAAATTGAATCAGTCCCGGTAGTCTGTGAGTTTCTAGATGTGTTTCCAAACGAGTTGCCTGG
50597988 GTTACCTCCGATCAGAGAGGTTGAGTTTGCTATTGATATA
261 GTTACCTCCGATCAGAGAGGTTGAGTTTGCTATTGATATA
50598028 GTACCTGGGA
Statistics
Matches: 299, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
300 299 1.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (300 bp):
ACACTGTATGATGCCATAGTAAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGA
GGTTATTCGGGTTGAAACTGATGAATCAAGTGAATTACCTACAGTGATTTCGTCTATGTTTGCTC
AGAGGTATGTAAGGAATGGTTGTAAAACTGATCTTGCTTATGTATTGAATACTAAAATGTCTGAA
TTGAAAATTGAATCAGTCCCGGTAGTCTGTGAGTTTCTAGATGTGTTTCCAAACGAGTTGCCTGG
GTTACCTCCGATCAGAGAGGTTGAGTTTGCTATTGATATA
Found at i:50598812 original size:568 final size:569
Alignment explanation
Indices: 50597728--50598822 Score: 1757
Period size: 568 Copynumber: 1.9 Consensus size: 569
50597718 TATTGATATA
* * *
50597728 ACACTGTATGATGCCATAGTAAATTATAGACATAAAACTATTGAATTGAAGTGTGAAAATGGTGA
1 ACACTGCATGATGCCATAGTAAATTATAGACATAAAACAATTGAATTGAAGTGTGAAAATGGAGA
*
50597793 GGTTATTCGGGTTGAAACTGATGAATCAAGTGAATTACCTACAGTGATTTCGTCTATGTTTGCTC
66 GGTTATTCGGGTTGAAACCGATGAATCAAGTGAATTACCTACAGTGATTTCGTCTATGTTTGCTC
* * *
50597858 AGAGGTATGTAAGGAATGGTTGTAAAACTGATCTTGCTTATGTATTGAATACTAAAATGTCTGAA
131 AGAGGTACGTAAGGAAAGGTTGTAAAACTGATCTTGCTTATGTATTGAATACTAAAATGTCTAAA
* * * *
50597923 TTGAAAATTGAATCAGTCCCGGTAGTCTGTGAGTTTCTAGATGTGTTTCCAAACGAGTTGCCTGG
196 TTGAAAATTGAATCAGTCCCGATAGTCTGAGAGTATCCAGATGTGTTTCCAAACGAGTTGCCTGG
* *
50597988 GTTACCTCCGATCAGAGAGGTTGAGTTTGCTATTGATATAGTACCTGGGACTTCACCGATATCAA
261 GATACCTCCGATCAGAGAGGTTGAGTTTGCTATTGATATAGTACCTAGGACTTCACCGATATCAA
* * *
50598053 TTGCTCCGTATAGGATGGCTCCGACTGAATTGAAAGAATTGAAAGCTCAGTTGCACAAGTTGGCA
326 TTGCTCCGTATAGGATAGCTCCGACAGAATTGAAAGAATTGAAAGCTCAGTTGCACAAGTTGACA
* * *
50598118 GATAAAGGTTTTGCGAGACTGAGTTTTTCTCCTTAGGGTGCTCTAGTATTATTTGTAAAGAATAA
391 GATAAAGGTTTTGCGAGACCGAGTTTTTCTCCCTAGGGTGCTCTAGTATTATTTGTAAAGAAGAA
*
50598183 AGACGAATCAATGAGACTTTGTATCGATTACCGGCAGCTCAACAAGGTGACTATAAAGAACAAGT
456 AGACGAATCAATGAGACTTTGTATCGATTACCGACAGCTCAACAAGGTGACTATAAAGAACAAGT
50598248 ATCCTTTGCCAATGATTGATGACTTGTTATTTTGGGTATAGACAGGTTG
521 ATCCTTTGCCAATGATTGATGACTTGTTATTTTGGGTATAGACAGGTTG
50598297 ACACTGCATGATGCCATAGTAAATTATAGACATAAAACAATTGAATTGAAGTGTGAAAATGGAGA
1 ACACTGCATGATGCCATAGTAAATTATAGACATAAAACAATTGAATTGAAGTGTGAAAATGGAGA
* ** *
50598362 GGTTATTCGGGTTGAAACCGATGAATCAAGTGAATTGCCTATTGTGATTTCGTCTATGTTTTCTC
66 GGTTATTCGGGTTGAAACCGATGAATCAAGTGAATTACCTACAGTGATTTCGTCTATGTTTGCTC
* * *
50598427 AGAGG-ACGTAAGGAAAGGTTGTGAAACTTATCTTGCTTATGTGTTGAATACTAAAATGTCTAAA
131 AGAGGTACGTAAGGAAAGGTTGTAAAACTGATCTTGCTTATGTATTGAATACTAAAATGTCTAAA
** * * *
50598491 TTGAAAATTGAATCAGTGTCGATAGTCTGAGAGTATCCGGATGTGTTTCCAGACGAGTTGCTTGG
196 TTGAAAATTGAATCAGTCCCGATAGTCTGAGAGTATCCAGATGTGTTTCCAAACGAGTTGCCTGG
* *
50598556 GATACCTCCGATCAGAGAGGTTGAGTTTGCTATTGATTTAGTACCTAGGACTTCACCGATATCGA
261 GATACCTCCGATCAGAGAGGTTGAGTTTGCTATTGATATAGTACCTAGGACTTCACCGATATCAA
* *
50598621 TTGCTCCGTATAGGATAGCTCTGACAGAATTGAAAGAATTGAAAGCTCAGTTGCA-AGAGTTGAT
326 TTGCTCCGTATAGGATAGCTCCGACAGAATTGAAAGAATTGAAAGCTCAGTTGCACA-AGTTGAC
*
50598685 AGATAAAGGTTTTGCGAGACCGAGTTTTTCTCCCTAGGGTGCT-TCAGTGTTATTTGTAAAGAAG
390 AGATAAAGGTTTTGCGAGACCGAGTTTTTCTCCCTAGGGTGCTCT-AGTATTATTTGTAAAGAAG
* * * * *
50598749 AAAGAC-AGATCTATGAGACTTTGTATCGATTATCGACTGCTTAACAAGGTGACTATTAAGAACA
454 AAAGACGA-ATCAATGAGACTTTGTATCGATTACCGACAGCTCAACAAGGTGACTATAAAGAACA
50598813 AGTATCCTTT
518 AGTATCCTTT
50598823 TTCGAGAACT
Statistics
Matches: 481, Mismatches: 42, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
567 3 0.01
568 351 0.73
569 127 0.26
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.32
Consensus pattern (569 bp):
ACACTGCATGATGCCATAGTAAATTATAGACATAAAACAATTGAATTGAAGTGTGAAAATGGAGA
GGTTATTCGGGTTGAAACCGATGAATCAAGTGAATTACCTACAGTGATTTCGTCTATGTTTGCTC
AGAGGTACGTAAGGAAAGGTTGTAAAACTGATCTTGCTTATGTATTGAATACTAAAATGTCTAAA
TTGAAAATTGAATCAGTCCCGATAGTCTGAGAGTATCCAGATGTGTTTCCAAACGAGTTGCCTGG
GATACCTCCGATCAGAGAGGTTGAGTTTGCTATTGATATAGTACCTAGGACTTCACCGATATCAA
TTGCTCCGTATAGGATAGCTCCGACAGAATTGAAAGAATTGAAAGCTCAGTTGCACAAGTTGACA
GATAAAGGTTTTGCGAGACCGAGTTTTTCTCCCTAGGGTGCTCTAGTATTATTTGTAAAGAAGAA
AGACGAATCAATGAGACTTTGTATCGATTACCGACAGCTCAACAAGGTGACTATAAAGAACAAGT
ATCCTTTGCCAATGATTGATGACTTGTTATTTTGGGTATAGACAGGTTG
Found at i:50599904 original size:39 final size:39
Alignment explanation
Indices: 50599845--50600738 Score: 1700
Period size: 39 Copynumber: 22.9 Consensus size: 39
50599835 ATTTGATGTG
*
50599845 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50599884 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50599923 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50599962 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600001 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600040 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600079 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600118 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600157 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600196 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600235 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600274 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600313 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600352 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600391 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600430 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600469 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600508 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
50600547 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGG-ATGTG
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT-TA
*
50600586 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
50600625 TATCAGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50600664 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
50600703 TATCCGGACTTAAGGTCTGCAGGCTACGTGCTGGAA
1 TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
50600739 ATATGTTCGG
Statistics
Matches: 843, Mismatches: 10, Indels: 4
0.98 0.01 0.00
Matches are distributed among these distances:
38 2 0.00
39 839 1.00
40 2 0.00
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.30
Consensus pattern (39 bp):
TATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:50603539 original size:56 final size:56
Alignment explanation
Indices: 50603453--50603684 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
50603443 ACAAGGGATG
50603453 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
50603509 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
50603565 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
50603621 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
50603677 ATGGGCAA
1 ATGGGCAA
50603685 TAAACTAATA
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:50604259 original size:40 final size:41
Alignment explanation
Indices: 50604163--50604267 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
50604153 CGAATGATGT
*
50604163 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
* * * *
50604203 CCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCATAA
*
50604243 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
50604268 AACGAGTAGC
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.02
40 46 0.84
41 8 0.15
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
Found at i:50611293 original size:141 final size:140
Alignment explanation
Indices: 50611027--50611411 Score: 442
Period size: 141 Copynumber: 2.8 Consensus size: 140
50611017 TATTTTTAGA
* * *
50611027 CCGACACTTTCTTAAGTGTTGGGATAGACTTG-CTAACATA-GACTTTGACTAACTCTTTGTATA
1 CCGACACTTTCCTAAGTGTTGGGATAGACTTGTC-GACATACG-CTTTGACCAACTCTTTGTATA
* * * ** * *
50611090 AGGGTTGGGATATGCATACCTAAGGCAACACTTAAAGAAGAGTCAACTTTGTCTAACACTATGCT
64 AGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAACACTATGCC
50611155 GACACTTTTGGG
129 GACACTTTTGGG
* *
50611167 CTGACATTTTTCCTAAGTGTTGGGATAGACTTGTCGACATACGCTTT-AGCCAACTCTTTGTATA
1 CCGACA-CTTTCCTAAGTGTTGGGATAGACTTGTCGACATACGCTTTGA-CCAACTCTTTGTATA
* * *
50611231 AGGGTTGAGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGTTTTGTCCAATACTATGCC
64 AGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAACACTATGCC
50611296 GACACTTTTGGG
129 GACACTTTTGGG
*
50611308 CCGACACTTTCCTAA-------G-T-G-CTT-T-GACCA-ACGCTTTGACCAACTATTTGTATAA
1 CCGACACTTTCCTAAGTGTTGGGATAGACTTGTCGA-CATACGCTTTGACCAACTCTTTGTATAA
* * *
50611360 GAGTTGGGATATGCATGCCTAAGGCAATGTTTAAATAAGAGTCGGCTTTGTC
65 GGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTC
50611412 TGTGACACCC
Statistics
Matches: 216, Mismatches: 23, Indels: 24
0.82 0.09 0.09
Matches are distributed among these distances:
128 71 0.33
129 4 0.02
130 3 0.01
131 1 0.00
132 1 0.00
133 1 0.00
140 14 0.06
141 119 0.55
142 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (140 bp):
CCGACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATACGCTTTGACCAACTCTTTGTATAAG
GGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTGTCCAACACTATGCCGA
CACTTTTGGG
Found at i:50613249 original size:120 final size:118
Alignment explanation
Indices: 50613031--50613275 Score: 350
Period size: 120 Copynumber: 2.1 Consensus size: 118
50613021 GGACTAAGAT
*
50613031 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
* ** *
50613096 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTC
66 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAATC
* *
50613150 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA
* * *
50613215 TAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATT
65 -AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
50613269 CCGAAGG
1 CCGAAGG
50613276 TACGTGATTT
Statistics
Matches: 113, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
119 51 0.45
120 60 0.53
121 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
Found at i:50613256 original size:40 final size:40
Alignment explanation
Indices: 50612978--50613242 Score: 367
Period size: 40 Copynumber: 6.7 Consensus size: 40
50612968 TTGAATGATG
* * * * *
50612978 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
50613018 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50613058 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
50613097 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
50613137 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
50613177 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
50613218 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
50613243 AACGAGTAGC
Statistics
Matches: 207, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
39 35 0.17
40 162 0.78
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50617684 original size:39 final size:39
Alignment explanation
Indices: 50617630--50618455 Score: 1607
Period size: 39 Copynumber: 21.2 Consensus size: 39
50617620 ATTTGATGTG
50617630 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50617669 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50617708 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50617747 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50617786 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50617825 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50617864 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50617903 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50617942 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50617981 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50618020 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50618059 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50618098 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50618137 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50618176 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50618215 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50618254 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50618293 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50618332 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
50618371 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
50618410 TATCCGGACTTAAGGTCCGCACGCTACGTGCTGGAAATA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
50618449 TGTCCGG
1 TATCCGG
50618456 GCTAAAGTCC
Statistics
Matches: 782, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 782 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:50622292 original size:17 final size:17
Alignment explanation
Indices: 50622272--50622309 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
50622262 TTCTTCATCG
*
50622272 AATATATTAAATCATTT
1 AATATATTAAATCATGT
50622289 AATATATTAAATCATGT
1 AATATATTAAATCATGT
50622306 AATA
1 AATA
50622310 GTAATTTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (17 bp):
AATATATTAAATCATGT
Found at i:50634330 original size:21 final size:21
Alignment explanation
Indices: 50634293--50634334 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
50634283 CATAAAAACT
*
50634293 TCTAAAAATTTCTCCACCATA
1 TCTAAAAATTTCGCCACCATA
50634314 TCTAAAAATATT-GCCACCATA
1 TCTAAAAAT-TTCGCCACCATA
50634335 CAATGCTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.40, C:0.26, G:0.02, T:0.31
Consensus pattern (21 bp):
TCTAAAAATTTCGCCACCATA
Found at i:50635990 original size:43 final size:42
Alignment explanation
Indices: 50635849--50636012 Score: 188
Period size: 43 Copynumber: 3.9 Consensus size: 42
50635839 TAACGAGATG
* *
50635849 TGATTATGTGTAAGACCATGTCTGGGACATTGGCAT-GATAT
1 TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGATAT
* *
50635890 TACGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAT
1 T--GATTACGTGTAAGACCATGTCTAGGACATTGGCATCGATAT
* *
50635934 ATGATTTCGTGTAAGAACATGTCTAGGACATTGGCATCGATAT
1 -TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGATAT
* * * *
50635977 GTGATAACATGTAAGACCATATCTAGGATA-TGGCAT
1 -TGATTACGTGTAAGACCATGTCTAGGACATTGGCAT
50636013 TGTACGAGCT
Statistics
Matches: 106, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
41 1 0.01
42 6 0.06
43 94 0.89
44 4 0.04
45 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (42 bp):
TGATTACGTGTAAGACCATGTCTAGGACATTGGCATCGATAT
Found at i:50642915 original size:32 final size:32
Alignment explanation
Indices: 50642760--50642918 Score: 176
Period size: 32 Copynumber: 4.9 Consensus size: 32
50642750 TTTCTGAGTG
* **
50642760 GTACACACAAAGTGTACCTTTCCTTTTCATA-T
1 GTACACACAAAGTGTACATAACCTTTTCA-AGT
* ** * * *
50642792 GGTATACACAAAGTACACCTAGCCTTTCCAAGT
1 -GTACACACAAAGTGTACATAACCTTTTCAAGT
*
50642825 GTATACACAAAGTGTACATAACCTTTTCAAGT
1 GTACACACAAAGTGTACATAACCTTTTCAAGT
* * *
50642857 GAACACACAAAGTGTACATAACCTTTTTAGGT
1 GTACACACAAAGTGTACATAACCTTTTCAAGT
50642889 GTACACACAAAGTGTACATAACCTTTTCAA
1 GTACACACAAAGTGTACATAACCTTTTCAA
50642919 ATTGTGCCAT
Statistics
Matches: 107, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
32 83 0.78
33 24 0.22
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.30
Consensus pattern (32 bp):
GTACACACAAAGTGTACATAACCTTTTCAAGT
Found at i:50646834 original size:29 final size:29
Alignment explanation
Indices: 50646781--50647052 Score: 200
Period size: 29 Copynumber: 9.4 Consensus size: 29
50646771 TCATCGACCA
* *
50646781 ATGAAAAGGGATAGCTT-GGCTATCGAAT
1 ATGAAAAGGGATAGCTTCGACCATCGAAT
*
50646809 ATGAAAATGGATAGCTTCGACCATCGAAT
1 ATGAAAAGGGATAGCTTCGACCATCGAAT
* * * *
50646838 ATGGAAAGGGATAGATTCGGCTATCGAAT
1 ATGAAAAGGGATAGCTTCGACCATCGAAT
* *
50646867 GTGAAAAGGGAT-GGTGAT-GACCATC-AACT
1 ATGAAAAGGGATAGCT--TCGACCATCGAA-T
* *
50646896 ATAAAAAGGGATAG-TGACGACCATCGAAT
1 ATGAAAAGGGATAGCT-TCGACCATCGAAT
* * * **
50646925 ATGAAAAAGAATAGCTTGGAGTATCGAAT
1 ATGAAAAGGGATAGCTTCGACCATCGAAT
* * *
50646954 ATGGAAAA-GGATAGCTTCAACTATCGATT
1 AT-GAAAAGGGATAGCTTCGACCATCGAAT
* * *
50646983 ATGAAAAGGGATCG-TGACGACCAT-TAATT
1 ATGAAAAGGGATAGCT-TCGACCATCGAA-T
* *
50647012 AATGAAAAGGGATGGTTTCGACCATCGAAT
1 -ATGAAAAGGGATAGCTTCGACCATCGAAT
50647042 ATGAAAAGGGA
1 ATGAAAAGGGA
50647053 CGGTTACAAT
Statistics
Matches: 191, Mismatches: 38, Indels: 29
0.74 0.15 0.11
Matches are distributed among these distances:
28 27 0.14
29 130 0.68
30 31 0.16
31 3 0.02
ACGTcount: A:0.39, C:0.12, G:0.26, T:0.23
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGACCATCGAAT
Found at i:50669639 original size:16 final size:16
Alignment explanation
Indices: 50669620--50669652 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
50669610 TGTTGAGGCT
50669620 AGAACAAAATGAGGTA
1 AGAACAAAATGAGGTA
50669636 AGAACAAAATGAGGTA
1 AGAACAAAATGAGGTA
50669652 A
1 A
50669653 CTTATTCACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.24, T:0.12
Consensus pattern (16 bp):
AGAACAAAATGAGGTA
Found at i:50671297 original size:49 final size:51
Alignment explanation
Indices: 50671167--50671306 Score: 169
Period size: 49 Copynumber: 2.8 Consensus size: 51
50671157 AACACCATTA
* * *
50671167 GTGGACAAGCCACCACTGATTTGCAGATAAATTGCCACTGATAACACTTTT
1 GTGGACAAGCCACCACTGATTTGCAAATATACTGCCACTGATAACACTTTT
* * * * *
50671218 ATGGACGATCCACCATTGATATGCAAATATACTGCCACT-ATTAA-A-TTTT
1 GTGGACAAGCCACCACTGATTTGCAAATATACTGCCACTGA-TAACACTTTT
*
50671267 GTGGACAAGCCACCACTGATTTGCATATATACTGCCACTG
1 GTGGACAAGCCACCACTGATTTGCAAATATACTGCCACTG
50671307 CTTCCACCTT
Statistics
Matches: 73, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
49 37 0.51
50 2 0.03
51 34 0.47
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (51 bp):
GTGGACAAGCCACCACTGATTTGCAAATATACTGCCACTGATAACACTTTT
Found at i:50677881 original size:52 final size:51
Alignment explanation
Indices: 50677795--50677942 Score: 219
Period size: 52 Copynumber: 2.9 Consensus size: 51
50677785 CCCTTGTAGT
* * *
50677795 CAAAGCTACCTTATTCACAAAGTGGCCTTCACATAGTACGACACTTGTGAC
1 CAAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACAACACTTGTGAC
* *
50677846 CAAAGCTATCTTTCTTCACAAAGTGGCCTTCACATAGTACCACCCTTGTGAC
1 CAAAGCTATC-TTCTTCACAAAGTGGCCTTCACATAGTACAACACTTGTGAC
*
50677898 C-AAGCTATC-TCTTCTCAAAGTGGCCTTCACATAGTACAACACTTG
1 CAAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACAACACTTG
50677943 AGTCACTAGT
Statistics
Matches: 89, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
49 33 0.37
51 17 0.19
52 39 0.44
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (51 bp):
CAAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACAACACTTGTGAC
Found at i:50677930 original size:49 final size:50
Alignment explanation
Indices: 50677774--50677934 Score: 216
Period size: 52 Copynumber: 3.2 Consensus size: 50
50677764 AGTGGCTAGA
* * * * *
50677774 ACATAGTACCTCCCTTGTAGTCAAAGCTACCTTATTCACAAAGTGGCCTTC
1 ACATAGTACCACCCTTGT-GACCAAGCTATCTTCTTCACAAAGTGGCCTTC
* *
50677825 ACATAGTACGACACTTGTGACCAAAGCTATCTTTCTTCACAAAGTGGCCTTC
1 ACATAGTACCACCCTTGTGACC-AAGCTATC-TTCTTCACAAAGTGGCCTTC
*
50677877 ACATAGTACCACCCTTGTGACCAAGCTATC-TCTTCTCAAAGTGGCCTTC
1 ACATAGTACCACCCTTGTGACCAAGCTATCTTCTTCACAAAGTGGCCTTC
50677926 ACATAGTAC
1 ACATAGTAC
50677935 AACACTTGAG
Statistics
Matches: 98, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
49 27 0.28
50 2 0.02
51 30 0.31
52 39 0.40
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (50 bp):
ACATAGTACCACCCTTGTGACCAAGCTATCTTCTTCACAAAGTGGCCTTC
Found at i:50686375 original size:16 final size:17
Alignment explanation
Indices: 50686351--50686386 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
50686341 GTAGATCGGC
*
50686351 AAAAGTCGAAATGCC-A
1 AAAAATCGAAATGCCGA
50686367 AAAAATCGAAATGCCGA
1 AAAAATCGAAATGCCGA
50686384 AAA
1 AAA
50686387 GCTGAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.56, C:0.17, G:0.17, T:0.11
Consensus pattern (17 bp):
AAAAATCGAAATGCCGA
Found at i:50686687 original size:28 final size:28
Alignment explanation
Indices: 50686605--50686694 Score: 112
Period size: 29 Copynumber: 3.1 Consensus size: 28
50686595 TGAGCATGAC
50686605 TATAAATGTGAATTGGGCCT-GATGGGCTA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCTA
* *
50686634 TATAAATGTGATTTGGACCTAATGGGAC-A
1 TATAAATGTGA-TTGGGCCTAGTGGG-CTA
50686663 TATAAATGTGATTGGGCCTAGTGGGCTA
1 TATAAATGTGATTGGGCCTAGTGGGCTA
50686691 TATA
1 TATA
50686695 CAGTATGTGA
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
27 1 0.02
28 18 0.34
29 33 0.62
30 1 0.02
ACGTcount: A:0.30, C:0.10, G:0.28, T:0.32
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCTA
Found at i:50693874 original size:39 final size:40
Alignment explanation
Indices: 50693670--50693892 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
50693660 TTGAATGCTG
* * * * * *
50693670 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
50693710 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
50693750 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
50693790 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
50693830 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
50693869 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
50693893 TGAACGAGGA
Statistics
Matches: 163, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 36 0.22
40 119 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:50693912 original size:79 final size:80
Alignment explanation
Indices: 50693744--50693927 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
50693734 TGTGCGAGAT
* * *
50693744 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
** *
50693809 GCATTCGTGCGAGTT
66 GCATTCGAACGAGTG
* * * *
50693824 ATTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
*
50693888 GCATTTGAACGAG-G
66 GCATTCGAACGAGTG
* *
50693902 AGCTATATCC-GGTTAAATCCCGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
50693928 TACGTGATTT
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 15 0.17
79 45 0.51
80 28 0.32
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAG
GCATTCGAACGAGTG
Found at i:50701284 original size:40 final size:39
Alignment explanation
Indices: 50701253--50701462 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
50701243 GGACTAAGAT
* *
50701253 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
50701293 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
50701333 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
50701373 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
50701413 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
50701452 CCGAAGGCATT
1 CCGAAGGCATT
50701463 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:50701416 original size:120 final size:120
Alignment explanation
Indices: 50701200--50701462 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
50701190 TTGAATGCTG
* *
50701200 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
50701264 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
50701320 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
50701383 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
50701439 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
50701463 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:50701482 original size:79 final size:80
Alignment explanation
Indices: 50701201--50701497 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
50701191 TGAATGCTGT
* ** * * * **
50701201 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
50701264 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
50701281 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
50701345 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
50701361 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
50701425 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
50701440 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
50701498 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:50702961 original size:13 final size:13
Alignment explanation
Indices: 50702940--50702972 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
50702930 AGAGGGTATA
*
50702940 CATGCCCGTGTGC
1 CATGGCCGTGTGC
50702953 CATGGCCGTGTGC
1 CATGGCCGTGTGC
50702966 CATGGCC
1 CATGGCC
50702973 ACACGGTCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.09, C:0.36, G:0.33, T:0.21
Consensus pattern (13 bp):
CATGGCCGTGTGC
Found at i:50707537 original size:43 final size:43
Alignment explanation
Indices: 50707489--50707652 Score: 172
Period size: 43 Copynumber: 3.8 Consensus size: 43
50707479 TATTAATGAG
** * *
50707489 ATGTGATTATGTGTAACACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCATT
* *
50707532 ATGTGATTACATGTAAGACCATATCTAGGACATTGGCATCGTT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCATT
* * * *
50707575 AAT-TAATTTCGTGTAAGACCATAGCTGGG-CTATTGGCATCGA-T
1 -ATGTGATTACATGTAAGACCATATCTGGGAC-ATTGGCATC-ATT
* *
50707618 ATGTGATAACATGTAAGACCATATCTGGGATATTG
1 ATGTGATTACATGTAAGACCATATCTGGGACATTG
50707653 CATTGTACGA
Statistics
Matches: 98, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
42 3 0.03
43 93 0.95
44 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATTGGCATCATT
Found at i:50708163 original size:50 final size:50
Alignment explanation
Indices: 50708109--50708251 Score: 223
Period size: 50 Copynumber: 2.9 Consensus size: 50
50708099 GTTTCAATAC
* *
50708109 GTGATCCCGTGTAAGACCATGTCGGGGACATGGCATTGGCATCGATATGT
1 GTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
*
50708159 GTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGT
1 GTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * *
50708209 GTGAACACATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 GTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
50708252 TCACTATGTG
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 85 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (50 bp):
GTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
Found at i:50711776 original size:47 final size:47
Alignment explanation
Indices: 50711676--50711981 Score: 194
Period size: 47 Copynumber: 6.7 Consensus size: 47
50711666 GTCCATCTGT
* * *
50711676 GTCGATGCCATGTCCTAGACA-GGTCTTACACTA--ACACATGTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA
* * *
50711720 GCCAATGCCATGTCCCAGACATAGTCTTACACTAGCTCACATCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA
* * *
50711767 GTCGATGCCATGTCCCGGACATGGTCTTACACT-GACT-ATCATTATCGAG
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCA-CA-TCTC-AA
* * * * *
50711816 GTCGATGCC-TGTCCTAGACA-CGTCTTACACTAGCACTCTTCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA
* * * *
50711861 -TGCTGATGCTATGTCCCAGACATGGTCTTCCACTAG--CAC-TC-GAG
1 GT-C-GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA
* ** * * * * *
50711905 GCCGATG-CATGTCTAATAAAT-GTCTTACACTGGCTCTCACCTCAAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTC-AA
*
50711951 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACT
50711982 GGCTTTCACT
Statistics
Matches: 200, Mismatches: 43, Indels: 36
0.72 0.15 0.13
Matches are distributed among these distances:
41 10 0.05
42 9 0.05
43 6 0.03
44 22 0.11
45 15 0.08
46 40 0.20
47 64 0.32
48 24 0.12
49 10 0.05
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAA
Found at i:50712982 original size:19 final size:19
Alignment explanation
Indices: 50712938--50712982 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
50712928 AGAGCACATG
* *
50712938 CCCGTATGCTAGGGACACG
1 CCCGTGTGCTAGGGACACC
**
50712957 CTTGTGTGCTAGGGACACC
1 CCCGTGTGCTAGGGACACC
50712976 CCCGTGT
1 CCCGTGT
50712983 CCCAAACCCG
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.16, C:0.31, G:0.31, T:0.22
Consensus pattern (19 bp):
CCCGTGTGCTAGGGACACC
Found at i:50714909 original size:50 final size:49
Alignment explanation
Indices: 50714824--50714966 Score: 160
Period size: 50 Copynumber: 2.9 Consensus size: 49
50714814 CACATAGTGA
* * * *
50714824 GATGCCAATGCCATATCCTAGATATGCTCTTACATGGGTTCACACATATC
1 GATGCCAATGCCATGTCC-AGACATGGTCTTACATGGGATCACACATATC
* * *
50714874 GATGCCAATGCCATGTCACGGACATGGTCTAACATGGGATCACACATATT
1 GATGCCAATGCCATGTC-CAGACATGGTCTTACATGGGATCACACATATC
* * * *
50714924 GATGCTAATGCCATGTCCCCGACATGGTTTTACATGGTATCAC
1 GATGCCAATGCCATGT-CCAGACATGGTCTTACATGGGATCAC
50714967 GTATCGAAAC
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
50 77 0.97
51 2 0.03
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (49 bp):
GATGCCAATGCCATGTCCAGACATGGTCTTACATGGGATCACACATATC
Found at i:50717561 original size:37 final size:37
Alignment explanation
Indices: 50717511--50717618 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
50717501 ACCTTTAGCT
* ** *
50717511 CGGACGAAATCTCCACACAAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
50717548 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* *
50717585 CGGACATACTCTCCACACGTAGTCATCGGGTCTT
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTT
50717619 TAGAGCTCGG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:50717815 original size:47 final size:47
Alignment explanation
Indices: 50717737--50718804 Score: 1848
Period size: 47 Copynumber: 22.6 Consensus size: 47
50717727 CCCTTCGGGA
* * * *
50717737 CTTATCACATTTATACACTTTCACATCCATCACCTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
50717784 CCTGTCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
50717831 CTTATCACATATATACACTTTCACATTCATCACATCGCCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
50717878 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50717925 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50717972 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50718019 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50718066 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50718113 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50718160 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50718207 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50718254 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50718301 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50718348 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50718395 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50718442 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
50718489 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
50718536 CTTATCACATATATACACTTTCACATTCATCACATCGCCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
50718583 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
** *
50718630 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50718677 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
50718726 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
50718773 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
50718805 TCAAATATAC
Statistics
Matches: 987, Mismatches: 30, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
47 921 0.93
49 66 0.07
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:50720315 original size:17 final size:18
Alignment explanation
Indices: 50720293--50720326 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
50720283 AGCCAAATTG
50720293 AAATTGCG-AAATTAAAT
1 AAATTGCGAAAATTAAAT
50720310 AAATTGCGAAAATTAAA
1 AAATTGCGAAAATTAAA
50720327 ATGGGAGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.26
Consensus pattern (18 bp):
AAATTGCGAAAATTAAAT
Found at i:50721050 original size:10 final size:10
Alignment explanation
Indices: 50721031--50721090 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
50721021 TTAAATTCTA
50721031 AAAGATAAAT
1 AAAGATAAAT
50721041 ACAA-ATAAAT
1 A-AAGATAAAT
*
50721051 AAAGATAACT
1 AAAGATAAAT
50721061 AAAGATAAAT
1 AAAGATAAAT
50721071 AAAGATAAAT
1 AAAGATAAAT
50721081 GAAA-ATAAAT
1 -AAAGATAAAT
50721091 CTTAAAATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.03, G:0.08, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:50727078 original size:25 final size:25
Alignment explanation
Indices: 50727049--50727102 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
50727039 ACATATAAAT
50727049 CACTTAATGCTTGTCCATATTTGTC
1 CACTTAATGCTTGTCCATATTTGTC
50727074 CACTTAATGCTTGTCCATATTTGTC
1 CACTTAATGCTTGTCCATATTTGTC
50727099 CACT
1 CACT
50727103 CACAAGTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.43
Consensus pattern (25 bp):
CACTTAATGCTTGTCCATATTTGTC
Found at i:50728967 original size:43 final size:41
Alignment explanation
Indices: 50728909--50729055 Score: 136
Period size: 43 Copynumber: 3.5 Consensus size: 41
50728899 CAATGCCGAC
* * *
50728909 GTCCCGGACGTGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACA-GTAATTC-ATATCGATGCCTAT
* * * *
50728952 GTCCCAGACAAGGTCTTACAG-AAATCATATACGATGTCGAT
1 GTCCCAGACATGGTCTTACAGTAATTCATAT-CGATGCCTAT
* * *
50728993 GTCCCAGACATGGTCTTATACGTAAATCTCA-ATCGAGGCCTGT
1 GTCCCAGACATGGTCTTACA-GT-AAT-TCATATCGATGCCTAT
50729036 GTCCCAGACATGGTCTTACA
1 GTCCCAGACATGGTCTTACA
50729056 CGATGTCTTA
Statistics
Matches: 84, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
40 4 0.05
41 29 0.35
42 2 0.02
43 42 0.50
44 4 0.05
45 3 0.04
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (41 bp):
GTCCCAGACATGGTCTTACAGTAATTCATATCGATGCCTAT
Found at i:50730613 original size:287 final size:287
Alignment explanation
Indices: 50730097--50730670 Score: 1148
Period size: 287 Copynumber: 2.0 Consensus size: 287
50730087 CAATTTAATC
50730097 ATTTTTCATAATTAAGCACAGAAACAGACAAATTAAATCACATAAATTTCACAGATGTAAATTCA
1 ATTTTTCATAATTAAGCACAGAAACAGACAAATTAAATCACATAAATTTCACAGATGTAAATTCA
50730162 CATATCACAGACACAGAAAATAATATTAAAATATTTTTTAGACTCGGATTTATGGTCCCGAAACC
66 CATATCACAGACACAGAAAATAATATTAAAATATTTTTTAGACTCGGATTTATGGTCCCGAAACC
50730227 ACTATTTTAGCTAGGGTCAAAACTGGACTGTTACAATTCTCCCCCCTTAGGGATTTTCGTCCCCG
131 ACTATTTTAGCTAGGGTCAAAACTGGACTGTTACAATTCTCCCCCCTTAGGGATTTTCGTCCCCG
50730292 AAAATCTTACCGTTAAATAGATTCAAATATTATTGTCTTATAGAATCTTCAGGCTCCCACGTAGC
196 AAAATCTTACCGTTAAATAGATTCAAATATTATTGTCTTATAGAATCTTCAGGCTCCCACGTAGC
50730357 CTCTTCAACACCGTGACGATGCCACAT
261 CTCTTCAACACCGTGACGATGCCACAT
50730384 ATTTTTCATAATTAAGCACAGAAACAGACAAATTAAATCACATAAATTTCACAGATGTAAATTCA
1 ATTTTTCATAATTAAGCACAGAAACAGACAAATTAAATCACATAAATTTCACAGATGTAAATTCA
50730449 CATATCACAGACACAGAAAATAATATTAAAATATTTTTTAGACTCGGATTTATGGTCCCGAAACC
66 CATATCACAGACACAGAAAATAATATTAAAATATTTTTTAGACTCGGATTTATGGTCCCGAAACC
50730514 ACTATTTTAGCTAGGGTCAAAACTGGACTGTTACAATTCTCCCCCCTTAGGGATTTTCGTCCCCG
131 ACTATTTTAGCTAGGGTCAAAACTGGACTGTTACAATTCTCCCCCCTTAGGGATTTTCGTCCCCG
50730579 AAAATCTTACCGTTAAATAGATTCAAATATTATTGTCTTATAGAATCTTCAGGCTCCCACGTAGC
196 AAAATCTTACCGTTAAATAGATTCAAATATTATTGTCTTATAGAATCTTCAGGCTCCCACGTAGC
50730644 CTCTTCAACACCGTGACGATGCCACAT
261 CTCTTCAACACCGTGACGATGCCACAT
50730671 CACTTTAATT
Statistics
Matches: 287, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
287 287 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (287 bp):
ATTTTTCATAATTAAGCACAGAAACAGACAAATTAAATCACATAAATTTCACAGATGTAAATTCA
CATATCACAGACACAGAAAATAATATTAAAATATTTTTTAGACTCGGATTTATGGTCCCGAAACC
ACTATTTTAGCTAGGGTCAAAACTGGACTGTTACAATTCTCCCCCCTTAGGGATTTTCGTCCCCG
AAAATCTTACCGTTAAATAGATTCAAATATTATTGTCTTATAGAATCTTCAGGCTCCCACGTAGC
CTCTTCAACACCGTGACGATGCCACAT
Found at i:50739236 original size:20 final size:19
Alignment explanation
Indices: 50739200--50739252 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
50739190 GGCAACCCAA
*
50739200 TTTTTAGTTTT-TTTATTAT
1 TTTTTA-TTTTATTTATTAC
50739219 TTTATTATTTTATTTATTAC
1 TTT-TTATTTTATTTATTAC
*
50739239 TTTTTACTTTATTT
1 TTTTTATTTTATTT
50739253 GGATATTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.75
Consensus pattern (19 bp):
TTTTTATTTTATTTATTAC
Found at i:50740460 original size:96 final size:97
Alignment explanation
Indices: 50740296--50740486 Score: 231
Period size: 96 Copynumber: 2.0 Consensus size: 97
50740286 AAATTAATTT
* * ** * *
50740296 TTAAGAATGTGTTGGGCTGAGTAACCGGGGTGAGTTGCTTGACTGTCGTCTCTCTTCACGTCAAA
1 TTAAGAATATGTTGGGCTGAGTAACCAGAATGAGGTGCTTGACTGTCATCTCTCTTCACGTCAAA
* * *
50740361 AGGTTCAATATGTTCTTACG-AAAAATAAAAA
66 AGGTTCAATATATTCCTAAGTAAAAATAAAAA
* * * * **
50740392 TTAAGAGTATGTTGGGCTGAGTAACCAGAATGGGGTGCTTGGCTGTCATCTTTCTTCGGGTCAAA
1 TTAAGAATATGTTGGGCTGAGTAACCAGAATGAGGTGCTTGACTGTCATCTCTCTTCACGTCAAA
*
50740457 AGGTTTAATATATTCCTAAGTAAAAATAAA
66 AGGTTCAATATATTCCTAAGTAAAAATAAA
50740487 TAAATTAAAT
Statistics
Matches: 78, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
96 69 0.88
97 9 0.12
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (97 bp):
TTAAGAATATGTTGGGCTGAGTAACCAGAATGAGGTGCTTGACTGTCATCTCTCTTCACGTCAAA
AGGTTCAATATATTCCTAAGTAAAAATAAAAA
Found at i:50741158 original size:10 final size:10
Alignment explanation
Indices: 50741143--50741202 Score: 61
Period size: 10 Copynumber: 6.0 Consensus size: 10
50741133 TAATTTTAGG
50741143 ATTTAT-TTT
1 ATTTATCTTT
50741152 CATTTATCTTT
1 -ATTTATCTTT
50741163 ATTTATCTTT
1 ATTTATCTTT
* *
50741173 AATTATATTT
1 ATTTATCTTT
*
50741183 AATTAT-TTGT
1 ATTTATCTT-T
50741193 ATTTATCTTT
1 ATTTATCTTT
50741203 TAGAATTTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.05
10 37 0.84
11 5 0.11
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:50743317 original size:40 final size:40
Alignment explanation
Indices: 50743249--50743351 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
50743239 CAGCTCATAG
* * * * * *
50743249 CCTGCGAGTCTCT-AGCCTGGATAGCATTCTAGCACGA-AG
1 CCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCA-GATAA
* *
50743288 CCTGTGGGTCTTTAAGCCCGGATAACATTCCAGCATATAA
1 CCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCAGATAA
50743328 CCTGCGGGTCTTTAAGCCCGGATA
1 CCTGCGGGTCTTTAAGCCCGGATA
50743352 CAATTCCTCA
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
39 11 0.21
40 42 0.79
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCAGATAA
Found at i:50747609 original size:21 final size:20
Alignment explanation
Indices: 50747580--50747619 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
50747570 CATGCATTTT
*
50747580 AATGATTGATTATAGATTATG
1 AATGATTGATGATAG-TTATG
*
50747601 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
50747620 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:50758563 original size:6 final size:6
Alignment explanation
Indices: 50758554--50758593 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
50758544 TAAAAAACTA
50758554 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
50758594 GAAAATAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.70, C:0.15, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:50760161 original size:28 final size:29
Alignment explanation
Indices: 50760130--50760185 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
50760120 CCGAAATTCT
50760130 GATAT-CATGGC-CTGAAGCCAAATTAGTC
1 GATATGCATGGCTC-GAAGCCAAATTAGTC
50760158 GATATGCATGGCTCGAAGCCAAATTAGT
1 GATATGCATGGCTCGAAGCCAAATTAGT
50760186 TTATCTCGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 5 0.19
29 20 0.77
30 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (29 bp):
GATATGCATGGCTCGAAGCCAAATTAGTC
Found at i:50765043 original size:30 final size:30
Alignment explanation
Indices: 50765009--50765069 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
50764999 TCCTTAACTC
50765009 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
50765039 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
50765069 A
1 A
50765070 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:50779414 original size:20 final size:21
Alignment explanation
Indices: 50779389--50779430 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
50779379 TCATTTAAAA
50779389 TTTCTC-TTCCATTCTC-TCAT
1 TTTCTCATTCC-TTCTCTTCAT
50779409 TTTCTCATTCCTTCTCTTCAT
1 TTTCTCATTCCTTCTCTTCAT
50779430 T
1 T
50779431 CCCACGCACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.10, C:0.33, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTCTCATTCCTTCTCTTCAT
Found at i:50782531 original size:26 final size:26
Alignment explanation
Indices: 50782461--50782568 Score: 87
Period size: 26 Copynumber: 4.2 Consensus size: 26
50782451 ATATAACAGA
* *
50782461 AAGCTCAC-ACAGAGCC-ATAATCAAG
1 AAGCTCACGA-AGAGCCTTTAATCAGG
* * * *
50782486 AAGTTCACGTAGAACTTTTAATCAGG
1 AAGCTCACGAAGAGCCTTTAATCAGG
* *
50782512 AAGCTCACGAAGAGCCTTTAAACGGG
1 AAGCTCACGAAGAGCCTTTAATCAGG
* * *
50782538 AAGTTCACGAAGAGCCATTAACCAGG
1 AAGCTCACGAAGAGCCTTTAATCAGG
50782564 -AGCTC
1 AAGCTC
50782569 CAGATAGACA
Statistics
Matches: 64, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
25 15 0.23
26 49 0.77
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (26 bp):
AAGCTCACGAAGAGCCTTTAATCAGG
Found at i:50788219 original size:42 final size:42
Alignment explanation
Indices: 50788149--50788493 Score: 163
Period size: 44 Copynumber: 8.0 Consensus size: 42
50788139 TTATTTAGAA
* * *
50788149 AAAAACGCCGCTAAAGACCACGATCTTTAGCAGTGTTTTTTT
1 AAAAACGCCGCTAAAGACCAGGACCTTTAGCAGCGTTTTTTT
* * * * **
50788191 AAAAGCGCCGCTGAAGACCAGGACCTTTAGCAGCGCTCTTAA
1 AAAAACGCCGCTAAAGACCAGGACCTTTAGCAGCGTTTTTTT
* * * *
50788233 AAAAATGCCGCCAAAGACTAGGACCTATAGCAGCGTTTTTTT
1 AAAAACGCCGCTAAAGACCAGGACCTTTAGCAGCGTTTTTTT
* * * *
50788275 AAAAAAGCGCCGCTAAAAGTA-CAGG-TCTATAGCGGCGTTTTTCTA
1 -AAAAA-CGCCGCT-AAAG-ACCAGGACCTTTAGCAGCGTTTTT-TT
* * * * * * * *
50788320 AAAAATGTCGCTATAGGCCAAGAACTTTAGCGGCGCTTTTTTA
1 AAAAACGCCGCTAAAGACCAGGACCTTTAGCAGCG-TTTTTTT
* * * * * * **
50788363 AAAAACGCTGCTATAGACCTGTACTTTTAGCGGCGCTTTTGTAG
1 AAAAACGCCGCTAAAGACCAGGACCTTTAGCAGCG-TTTT-TTT
* * * * * ***
50788407 AAAAACGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTGCAA
1 AAAAACGCCGCTAAAGACCAGGACCTTTAGCAGCG-TTTT-TTT
* * * * *
50788451 AAAAATGCCGCTATAGACCTGTACTTTTAGCAGCGCTTTTTTT
1 AAAAACGCCGCTAAAGACCAGGACCTTTAGCAGCG-TTTTTTT
50788494 GCGGCGATTT
Statistics
Matches: 243, Mismatches: 51, Indels: 17
0.78 0.16 0.05
Matches are distributed among these distances:
42 71 0.29
43 53 0.22
44 110 0.45
45 8 0.03
46 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGACCAGGACCTTTAGCAGCGTTTTTTT
Found at i:50788360 original size:44 final size:44
Alignment explanation
Indices: 50788304--50788491 Score: 231
Period size: 44 Copynumber: 4.3 Consensus size: 44
50788294 TACAGGTCTA
* * * * *
50788304 TAGCGGCG-TTTTTCTAAAAAATGTCGCTATAGGCCAAGAAC-TT
1 TAGCGGCGCTTTTTCTAAAAAACGCCGCTATAGACC-TGTACTTT
*
50788347 TAGCGGCGCTTTTT-TAAAAAACGCTGCTATAGACCTGTACTTT
1 TAGCGGCGCTTTTTCTAAAAAACGCCGCTATAGACCTGTACTTT
*
50788390 TAGCGGCGC-TTTTGTAGAAAAACGCCGCTATAGACCTGTACTTT
1 TAGCGGCGCTTTTTCTA-AAAAACGCCGCTATAGACCTGTACTTT
* * *
50788434 TAGCGGCGCTTTTGCAAAAAAATGCCGCTATAGACCTGTACTTT
1 TAGCGGCGCTTTTTCTAAAAAACGCCGCTATAGACCTGTACTTT
*
50788478 TAGCAGCGCTTTTT
1 TAGCGGCGCTTTTT
50788492 TTGCGGCGAT
Statistics
Matches: 127, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
42 7 0.06
43 38 0.30
44 78 0.61
45 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (44 bp):
TAGCGGCGCTTTTTCTAAAAAACGCCGCTATAGACCTGTACTTT
Found at i:50789454 original size:18 final size:18
Alignment explanation
Indices: 50789422--50789459 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
50789412 TACAATATAG
50789422 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
50789441 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
50789458 TA
1 TA
50789460 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:50795039 original size:21 final size:21
Alignment explanation
Indices: 50795015--50795054 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
50795005 AAATTAATTC
*
50795015 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
50795036 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
50795055 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:50797484 original size:35 final size:34
Alignment explanation
Indices: 50797444--50797518 Score: 80
Period size: 34 Copynumber: 2.2 Consensus size: 34
50797434 TATTACAGAA
*
50797444 ACGCCGCTAAAGCCA-TTACTAATTCAGAGGAAGCG
1 ACGCCGCTAAA-CCATTTACT-ATTCAGAGGAAACG
* ** *
50797479 ACGCCGTTTTACTATTTACTATTCAGAGGAAACG
1 ACGCCGCTAAACCATTTACTATTCAGAGGAAACG
50797513 ACGCCG
1 ACGCCG
50797519 TTTTACTGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
34 21 0.62
35 13 0.38
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (34 bp):
ACGCCGCTAAACCATTTACTATTCAGAGGAAACG
Found at i:50797508 original size:34 final size:35
Alignment explanation
Indices: 50797459--50797525 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
50797449 GCTAAAGCCA
*
50797459 TTACTAATTCAGAGGAAGCGACGCCGTTTTACTAT
1 TTACTAATTCAGAGGAAACGACGCCGTTTTACTAT
50797494 TTACT-ATTCAGAGGAAACGACGCCGTTTTACT
1 TTACTAATTCAGAGGAAACGACGCCGTTTTACT
50797526 GTAATGTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 26 0.84
35 5 0.16
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (35 bp):
TTACTAATTCAGAGGAAACGACGCCGTTTTACTAT
Found at i:50798089 original size:15 final size:15
Alignment explanation
Indices: 50798071--50798101 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50798061 TCAAATAATA
*
50798071 TATATATATTTATCT
1 TATATACATTTATCT
50798086 TATATACATTTATCT
1 TATATACATTTATCT
50798101 T
1 T
50798102 CTAAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.58
Consensus pattern (15 bp):
TATATACATTTATCT
Found at i:50798498 original size:25 final size:25
Alignment explanation
Indices: 50798470--50798521 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
50798460 TTTCTAGCTA
50798470 ATAGTTCAACAAATGCTAATTCCAC
1 ATAGTTCAACAAATGCTAATTCCAC
50798495 ATAGTTCAACAAATGCTAATTCCAC
1 ATAGTTCAACAAATGCTAATTCCAC
50798520 AT
1 AT
50798522 TCAAAATCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (25 bp):
ATAGTTCAACAAATGCTAATTCCAC
Found at i:50799083 original size:41 final size:41
Alignment explanation
Indices: 50798933--50799070 Score: 215
Period size: 41 Copynumber: 3.4 Consensus size: 41
50798923 GGTTTATGAC
*
50798933 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATATGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGT
*
50798974 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGATCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGT
* ** *
50799015 TTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATTCTCT-AT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGT
50799055 TTTTAGCGGCGTTTTA
1 TTTTAGCGGCGTTTTA
50799071 GTAAAAAACG
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
40 17 0.19
41 74 0.81
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATCTGGT
Found at i:50799133 original size:40 final size:40
Alignment explanation
Indices: 50798933--50799141 Score: 190
Period size: 41 Copynumber: 5.1 Consensus size: 40
50798923 GGTTTATGAC
* * * * *
50798933 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGATATGGT
1 TTTTAGCGGCGTTTTACCTAAAGCGCCGTTATTGCTCT-GT
* * * *
50798974 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGATCTGGT
1 TTTTAGCGGCGTTTTACCTAAAGCGCCGTTATTGCTCT-GT
* *
50799015 TTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATT-CTCTAT
1 TTTTAGCGGCGTTTTACCTAAAGCGCCG-TTATTGCTCTGT
* * *
50799055 TTTTAGCGGCGTTTTA-GTAAAAAACGCCGTTGTTGCTCTGT
1 TTTTAGCGGCGTTTTACCT--AAAGCGCCGTTATTGCTCTGT
* *
50799096 TTTTAGTGGCGTTTT-CCTTAAGACGCCGTTATTGCTCTGT
1 TTTTAGCGGCGTTTTACCTAAAG-CGCCGTTATTGCTCTGT
50799136 ATTTTA
1 -TTTTA
50799142 AAATTTTTGT
Statistics
Matches: 143, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
39 3 0.02
40 36 0.25
41 102 0.71
42 2 0.01
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.38
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCTAAAGCGCCGTTATTGCTCTGT
Found at i:50808699 original size:44 final size:44
Alignment explanation
Indices: 50808650--50808741 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
50808640 TGTTCAGGGG
* * *
50808650 TACTTCGACCTT-GAGTCGATGAGGCACTATAAGTGTCGTACTGT
1 TACTTCG-CCTTCGAGTCGACGAGGCACCATAAGTGTCGTACTGC
* **
50808694 TACTTCGTCTTCGAGTCGACGAGGCACCATGTGTGTCGTACTGC
1 TACTTCGCCTTCGAGTCGACGAGGCACCATAAGTGTCGTACTGC
50808738 TACT
1 TACT
50808742 GTTACTTCGG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 3 0.07
44 38 0.93
ACGTcount: A:0.20, C:0.24, G:0.25, T:0.32
Consensus pattern (44 bp):
TACTTCGCCTTCGAGTCGACGAGGCACCATAAGTGTCGTACTGC
Found at i:50808915 original size:10 final size:10
Alignment explanation
Indices: 50808868--50808918 Score: 52
Period size: 10 Copynumber: 5.3 Consensus size: 10
50808858 TGACTGTTAC
50808868 TGAATGATAT
1 TGAATGATAT
50808878 TG-ATGA-AT
1 TGAATGATAT
*
50808886 TGATTGATAT
1 TGAATGATAT
**
50808896 TGAAAAATAT
1 TGAATGATAT
*
50808906 TGACTGATAT
1 TGAATGATAT
50808916 TGA
1 TGA
50808919 GCTTGGAATA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
8 4 0.12
9 7 0.22
10 21 0.66
ACGTcount: A:0.39, C:0.02, G:0.20, T:0.39
Consensus pattern (10 bp):
TGAATGATAT
Found at i:50810687 original size:11 final size:11
Alignment explanation
Indices: 50810671--50810695 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
50810661 CATAACATCG
50810671 ACACATGAAAT
1 ACACATGAAAT
50810682 ACACATGAAAT
1 ACACATGAAAT
50810693 ACA
1 ACA
50810696 TGATTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.20, G:0.08, T:0.16
Consensus pattern (11 bp):
ACACATGAAAT
Found at i:50815000 original size:11 final size:11
Alignment explanation
Indices: 50814984--50815017 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
50814974 GACATAAGAA
50814984 AATTTATTTTT
1 AATTTATTTTT
50814995 AATTTATTTTT
1 AATTTATTTTT
50815006 -ATTATATTTTT
1 AATT-TATTTTT
50815017 A
1 A
50815018 TGGTACAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 3 0.14
11 18 0.86
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
AATTTATTTTT
Found at i:50816136 original size:42 final size:42
Alignment explanation
Indices: 50816089--50816195 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 42
50816079 TGAGATTCCG
* *
50816089 TATAAGACCATATCTGGGATATGGCATCGGTATG-TGATTTCA
1 TATAAGACCATATCAGGGATATGGCATCGATATGAT-ATTTCA
* * **
50816131 TATAAGACCATGTCAGGGACATGGTGTCGATATGATATTTCA
1 TATAAGACCATATCAGGGATATGGCATCGATATGATATTTCA
* *
50816173 TGTAAGACCATATCCGGGATATG
1 TATAAGACCATATCAGGGATATG
50816196 ACATTAATAC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 53 0.98
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (42 bp):
TATAAGACCATATCAGGGATATGGCATCGATATGATATTTCA
Found at i:50818194 original size:16 final size:16
Alignment explanation
Indices: 50818175--50818206 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50818165 AATTGTTTTA
50818175 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
50818191 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
50818207 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:50818639 original size:50 final size:50
Alignment explanation
Indices: 50818406--50818749 Score: 307
Period size: 50 Copynumber: 6.9 Consensus size: 50
50818396 ACCGAAGCTC
* * * **
50818406 TCTGGTACCCATAGTAGCTTGCACTTAGTACTACACATGCAACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * * *
50818456 TCTAGTACACATAATATCCTGCACTTAGTACTACACAC-TGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * ** *
50818505 TCTGATACACATAGTAGCCTGCACTTAGTACTATACATGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* ** *
50818557 -CGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * *
50818606 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* ** * * ** *
50818656 TCTGATACATGTAGTAGCCTACACTTAGTATTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* *
50818708 -CGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGAC
50818750 TCACAACGAA
Statistics
Matches: 232, Mismatches: 56, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
49 41 0.18
50 115 0.50
51 74 0.32
52 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:50818723 original size:151 final size:150
Alignment explanation
Indices: 50818409--50818749 Score: 529
Period size: 151 Copynumber: 2.3 Consensus size: 150
50818399 GAAGCTCTCT
* * ** *
50818409 GGTACCCATAGTAGCTTGCACTTAGTACTACACATGCAACCTATCAATCTAGTACACATAATATC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTAGTACACATAATAGC
* *
50818474 CTGCACTTAGTACTACACACTGACTTAACCATCTGATACACATAGTAGCCTGCACTTAGTACTAT
66 CTGCACTTAGTACTACACACTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTAC
*
50818539 ACATGTGATCGAAGTTAACG
131 ACACGTGATCGAAGTTAACG
* * * *
50818559 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTAGTACACATAATAGC
** *
50818624 CTGCACTTAGTACTACACACATGACTTAACCATCTGATACATGTAGTAGCCTACACTTAGTATTA
66 CTGCACTTAGTACTACACAC-TGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTA
50818689 CACACGTGATCGAAGTTAACG
130 CACACGTGATCGAAGTTAACG
*
50818710 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGAC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGAC
50818750 TCACAACGAA
Statistics
Matches: 173, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
150 76 0.44
151 97 0.56
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTAGTACACATAATAGC
CTGCACTTAGTACTACACACTGACTTAACCATCTGATACACATAGTAGCCTACACTTAGTACTAC
ACACGTGATCGAAGTTAACG
Found at i:50821724 original size:15 final size:15
Alignment explanation
Indices: 50821704--50821742 Score: 62
Period size: 15 Copynumber: 2.6 Consensus size: 15
50821694 AACCAGGATC
50821704 TCCAAGAT-AGAGAAA
1 TCCAAGATAAG-GAAA
50821719 TCCAAGATAAGGAAA
1 TCCAAGATAAGGAAA
50821734 TCCAAGATA
1 TCCAAGATA
50821743 CAATATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 21 0.91
16 2 0.09
ACGTcount: A:0.51, C:0.15, G:0.18, T:0.15
Consensus pattern (15 bp):
TCCAAGATAAGGAAA
Found at i:50823464 original size:13 final size:13
Alignment explanation
Indices: 50823446--50823470 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50823436 TCCCATACTT
50823446 ATACACATTATAG
1 ATACACATTATAG
50823459 ATACACATTATA
1 ATACACATTATA
50823471 ACATCAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (13 bp):
ATACACATTATAG
Found at i:50824697 original size:16 final size:16
Alignment explanation
Indices: 50824678--50824709 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50824668 AATTGTTTTA
50824678 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
50824694 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
50824710 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:50824985 original size:50 final size:50
Alignment explanation
Indices: 50824909--50825551 Score: 594
Period size: 50 Copynumber: 12.8 Consensus size: 50
50824899 ACCGAAGCTC
* * *
50824909 TCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * ** *
50824959 TCTGGTACACGTTGTAGCCTGGACTTAGTAGTACACATGTGATCGAATTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* * * *
50825011 -CGGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * * * *
50825060 TCTGGTACACCTAATAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * * ** *
50825110 TCTGATACACGTAGTAACCTGCACTTAGTACTATACACGTGATCGAAGT-TA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* * * *
50825161 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * ** *
50825211 TCTGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* * * *
50825263 -CAGGTACGCATAGTAGCCTGCACTTAGTACTACACTTGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
*
50825312 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACTTGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* * * * * *
50825362 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACATACGTGA-TTGAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCT-ATCAA
* * * * * ** *
50825412 TCTGATACACGTAGTAGCCTACACTTAGTACTATACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCTA-TCAA
* ** *
50825464 -CGGGTAGGCCTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
* *
50825513 TATGGTACACGTAGTAGCCTGCACTTAGTACGACACATG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATG
50825552 TGACTCACAA
Statistics
Matches: 474, Mismatches: 105, Indels: 28
0.78 0.17 0.05
Matches are distributed among these distances:
49 11 0.02
50 314 0.66
51 142 0.30
52 7 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
Found at i:50825040 original size:101 final size:101
Alignment explanation
Indices: 50824912--50825444 Score: 328
Period size: 101 Copynumber: 5.3 Consensus size: 101
50824902 GAAGCTCTCT
* **
50824912 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTTGTAGC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACCTAATAGC
* * *
50824977 CTGGACTTAGTAGTACACATGTGATCGAATTTAACG
66 CTGCACTTAGTACTACACACGTGATCGAATTTAACG
* *
50825013 GGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACCTAATAGC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACCTAATAGC
* ** * *
50825078 CTGCACTTAGTACTACACACGTGA-CTTAA-CCATCT
66 CTGCACTTAGTACTACACACGTGATC-GAATTTAACG
* * * * * * * * ** * * * * *
50825113 GATACACGTAGTAACCTGCACTTAGTACTATACACGTGATCGAAGT-TATCGGGTACGCATAGTA
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGA-CCTA-TCAATCTGGTACACCTAATA
* ** * *
50825177 GCCTGCACTTAGTACTACACACGCGA-CCTA-TCAATCT
64 GCCTGCACTTAGTACTACACACGTGATCGAATTTAA-CG
* * * * * * ** * * * * *
50825214 GGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGATCGAAGTTAA-CAGGTACGCATAGTA
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGA-CCTA-TCAATCTGGTACACCTAATA
** * ** * *
50825278 GCCTGCACTTAGTACTACACTTGCGA-CCTA-TCAATCT
64 GCCTGCACTTAGTACTACACACGTGATCGAATTTAA-CG
* * * * * *
50825315 GGTACACGTAGTAGCCTGCACTTAGTACTACACTTGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACCTAATAGC
* * ** * *
50825380 CTGCACTTAGTACTACATACGTGATTGAA-CCATCT
66 CTGCACTTAGTACTACACACGTGATCGAATTTAACG
* * *
50825415 GATACACGTAGTAGCCTACACTTAGTACTA
1 GGTACGCATAGTAGCCTACACTTAGTACTA
50825445 TACACGTGAT
Statistics
Matches: 363, Mismatches: 62, Indels: 15
0.82 0.14 0.03
Matches are distributed among these distances:
99 3 0.01
100 103 0.28
101 255 0.70
102 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (101 bp):
GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACCTAATAGC
CTGCACTTAGTACTACACACGTGATCGAATTTAACG
Found at i:50825184 original size:151 final size:151
Alignment explanation
Indices: 50824909--50825556 Score: 804
Period size: 151 Copynumber: 4.3 Consensus size: 151
50824899 ACCGAAGCTC
* * * * * * * * * *
50824909 TCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTTGT
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGT
* * * * * *
50824974 AGCCTGGACTTAGTAGTACACATGTGATCGAATTTAACGGGTACGCATAGTAGCTTGCACTTAGT
66 AGCCTGCACTTAGTACTATACACGTGATCGAAGTTAACGGGTACGCATAGTAGCCTGCACTTAGT
50825039 ACTACACATGCGACCTATCAA
131 ACTACACATGCGACCTATCAA
* *
50825060 TCTGGTACACCTAATAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGT
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGT
* *
50825125 AACCTGCACTTAGTACTATACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACTTAGT
66 AGCCTGCACTTAGTACTATACACGTGATCGAAGTTAACGGGTACGCATAGTAGCCTGCACTTAGT
*
50825190 ACTACACACGCGACCTATCAA
131 ACTACACATGCGACCTATCAA
* * ** * * * * *
50825211 TCTGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGA-TCGAAGTTAACAGGTACGCATA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACT-TAA-CCATCTGATACACGTA
* ** * * *
50825275 GTAGCCTGCACTTAGTAC--TACACTTG--CGACCTATCAATCTGGTACACGTAGTAGCCTGCAC
64 GTAGCCTGCACTTAGTACTATACACGTGATCGAAGT-T-AA-CGGGTACGCATAGTAGCCTGCAC
*
50825336 TTAGTACTACACTTGCGACCTATCAA
126 TTAGTACTACACATGCGACCTATCAA
*
50825362 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACATACGTGA-TTGAACCATCTGATACACGTAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTT-AACCATCTGATACACGTAG
* * *
50825426 TAGCCTACACTTAGTACTATACACGTGATCGAAGTTAACGGGTAGGCCTAGTAGCCTGCACTTAG
65 TAGCCTGCACTTAGTACTATACACGTGATCGAAGTTAACGGGTACGCATAGTAGCCTGCACTTAG
50825491 TACTACACATGCGACCTATCAA
130 TACTACACATGCGACCTATCAA
* * *
50825513 TATGGTACACGTAGTAGCCTGCACTTAGTACGACACATGTGACT
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACT
50825557 CACAACGACT
Statistics
Matches: 422, Mismatches: 64, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
148 4 0.01
149 1 0.00
150 35 0.08
151 341 0.81
152 36 0.09
153 1 0.00
154 4 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (151 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGT
AGCCTGCACTTAGTACTATACACGTGATCGAAGTTAACGGGTACGCATAGTAGCCTGCACTTAGT
ACTACACATGCGACCTATCAA
Found at i:50825522 original size:101 final size:101
Alignment explanation
Indices: 50825074--50825543 Score: 608
Period size: 101 Copynumber: 4.7 Consensus size: 101
50825064 GTACACCTAA
* * * * * *
50825074 TAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAACCTGCACTTAGT
1 TAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
*
50825139 ACTATACACGTGATCGAAGTTATCGGGTACGCATAG
66 ACTATACACGTGATCGAAGTTAACGGGTACGCATAG
*
50825175 TAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTGGTACACGTAGTAGCCTGCATTTAGT
1 TAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
* *
50825240 ACTACACACGTGATCGAAGTTAACAGGTACGCATAG
66 ACTATACACGTGATCGAAGTTAACGGGTACGCATAG
**
50825276 TAGCCTGCACTTAGTACTACACTTGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
1 TAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
* ** * * *
50825341 AC--TACACTTG--CGACCTATCAATCTGGTACACGTAG
66 ACTATACACGTGATCGAAGT-T-AA-CGGGTACGCATAG
* * * * * * *
50825376 TAGCCTGCACTTAGTACTACATACGTGA-TTGAACCATCTGATACACGTAGTAGCCTACACTTAG
1 TAGCCTGCACTTAGTACTACACACGCGACCT-ATCAATCTGGTACACGTAGTAGCCTGCACTTAG
* *
50825440 TACTATACACGTGATCGAAGTTAACGGGTAGGCCTAG
65 TACTATACACGTGATCGAAGTTAACGGGTACGCATAG
* *
50825477 TAGCCTGCACTTAGTACTACACATGCGACCTATCAATATGGTACACGTAGTAGCCTGCACTTAGT
1 TAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
50825542 AC
66 AC
50825544 GACACATGTG
Statistics
Matches: 315, Mismatches: 45, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
97 4 0.01
98 1 0.00
99 9 0.03
100 66 0.21
101 220 0.70
102 10 0.03
103 1 0.00
104 4 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (101 bp):
TAGCCTGCACTTAGTACTACACACGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGT
ACTATACACGTGATCGAAGTTAACGGGTACGCATAG
Found at i:50825933 original size:19 final size:20
Alignment explanation
Indices: 50825903--50825949 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
50825893 GAGAACATGT
50825903 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
**
50825924 TA-ATATCAAAATTTTCACA
1 TATATATCAAAATAATCACA
50825943 TATATAT
1 TATATAT
50825950 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.15, G:0.00, T:0.36
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:50831009 original size:25 final size:25
Alignment explanation
Indices: 50830980--50831029 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
50830970 GATCTATAAA
50830980 TGGTAAGCTCATACGAGCTAAATAT
1 TGGTAAGCTCATACGAGCTAAATAT
*
50831005 TGGTAAGCTCATGCGAGCTAAATAT
1 TGGTAAGCTCATACGAGCTAAATAT
50831030 CAGTAACCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (25 bp):
TGGTAAGCTCATACGAGCTAAATAT
Found at i:50831035 original size:25 final size:25
Alignment explanation
Indices: 50830982--50831035 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
50830972 TCTATAAATG
**
50830982 GTAAGCTCATACGAGCTAAATATTG
1 GTAAGCTCATACGAGCTAAATATCA
*
50831007 GTAAGCTCATGCGAGCTAAATATCA
1 GTAAGCTCATACGAGCTAAATATCA
50831032 GTAA
1 GTAA
50831036 CCCTATTGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (25 bp):
GTAAGCTCATACGAGCTAAATATCA
Found at i:50835046 original size:28 final size:29
Alignment explanation
Indices: 50835014--50835128 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
50835004 TACCTATATC
* *
50835014 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
50835042 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
50835071 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * *
50835100 TAGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
50835128 T
1 T
50835129 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 27 0.36
29 48 0.63
30 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:50835066 original size:57 final size:58
Alignment explanation
Indices: 50835005--50835115 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 58
50834995 AAATTCACAT
* * *
50835005 ACCTATATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCCAAATC
* * *
50835062 ACCTATATATGGCCCATTAGGCCCAAATCACATTTATATAGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCCA
50835116 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 22 0.47
58 25 0.53
ACGTcount: A:0.30, C:0.31, G:0.14, T:0.26
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATAGCCCATTAGGCCCAAATC
Found at i:50835209 original size:17 final size:18
Alignment explanation
Indices: 50835187--50835220 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50835177 TACCTATTAT
50835187 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
50835204 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
50835221 TCTGGCTCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:50839359 original size:30 final size:29
Alignment explanation
Indices: 50839295--50839366 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 29
50839285 AGATGACATG
** *
50839295 AAAA-CCAAGATAAAGAATTCTGGGACAA
1 AAAATCCAAGATAAAGAAACCTGAGACAA
*
50839323 AGAAATCCAAGATAAAGAAACCTGAGATACA
1 A-AAATCCAAGATAAAGAAACCTGAGACA-A
50839354 AAAATCCAAGATA
1 AAAATCCAAGATA
50839367 CAATATCATA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 1 0.03
29 3 0.08
30 31 0.84
31 2 0.05
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.14
Consensus pattern (29 bp):
AAAATCCAAGATAAAGAAACCTGAGACAA
Found at i:50839367 original size:15 final size:16
Alignment explanation
Indices: 50839322--50839369 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
50839312 TTCTGGGACA
50839322 AAGAAATCCAAGATA-
1 AAGAAATCCAAGATAC
*
50839337 AAGAAA-CCTGAGATAC
1 AAGAAATCC-AAGATAC
50839353 AA-AAATCCAAGATAC
1 AAGAAATCCAAGATAC
50839368 AA
1 AA
50839370 TATCATAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
14 2 0.07
15 22 0.79
16 4 0.14
ACGTcount: A:0.58, C:0.17, G:0.12, T:0.12
Consensus pattern (16 bp):
AAGAAATCCAAGATAC
Found at i:50851538 original size:48 final size:48
Alignment explanation
Indices: 50851462--50851620 Score: 169
Period size: 49 Copynumber: 3.3 Consensus size: 48
50851452 GCAAAGAACT
* * **
50851462 GATTGAGAGAG-GGAAAAAAAACAAGAAGCAACCGGTC-AAGGGAAACC
1 GATTGAGAAAGAGG-AAAAAAACTAGAAGCAATAGGTCAAAGGGAAACC
* * *
50851509 GATTGAGAAAGAGGAAAAAGAACTAGAAGCAATTGGTCAAAAGAAAACC
1 GATTGAGAAAGAGGAAAAA-AACTAGAAGCAATAGGTCAAAGGGAAACC
* * * **
50851558 AATTGGGTAAGAGGAAAAAAACTTAGAAGCAATAATTCAAAGGGAAACC
1 GATTGAGAAAGAGGAAAAAAAC-TAGAAGCAATAGGTCAAAGGGAAACC
50851607 GATTGAGAAAGAGG
1 GATTGAGAAAGAGG
50851621 GAAGAAAAGA
Statistics
Matches: 91, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
47 15 0.16
48 20 0.22
49 56 0.62
ACGTcount: A:0.50, C:0.11, G:0.27, T:0.12
Consensus pattern (48 bp):
GATTGAGAAAGAGGAAAAAAACTAGAAGCAATAGGTCAAAGGGAAACC
Found at i:50863275 original size:49 final size:49
Alignment explanation
Indices: 50863176--50863334 Score: 187
Period size: 49 Copynumber: 3.3 Consensus size: 49
50863166 GCAATGAACT
* * * *
50863176 GATTGAGAGAG-GGAAAAAAAACAAGAAGCAACCGGTC-AAGGGAAACC
1 GATTGAGAAAGAGGAAAAAGAACTAGAAGCAATCGGTCAAAGGGAAACC
* *
50863223 GATTGAGAAAGAGGAAAAAGAACTAGAAGCAATCGGTCAAAAGAAAACC
1 GATTGAGAAAGAGGAAAAAGAACTAGAAGCAATCGGTCAAAGGGAAACC
* * * * ***
50863272 GATTGGGTAAGAGGAAAAAGAATTATAAGCAATAATTCAAAGGGAAACC
1 GATTGAGAAAGAGGAAAAAGAACTAGAAGCAATCGGTCAAAGGGAAACC
50863321 GATTGAGAAAGAGG
1 GATTGAGAAAGAGG
50863335 GAAGAAAAGA
Statistics
Matches: 93, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
47 10 0.11
48 23 0.25
49 60 0.65
ACGTcount: A:0.50, C:0.11, G:0.28, T:0.12
Consensus pattern (49 bp):
GATTGAGAAAGAGGAAAAAGAACTAGAAGCAATCGGTCAAAGGGAAACC
Found at i:50870614 original size:42 final size:43
Alignment explanation
Indices: 50870545--50870634 Score: 103
Period size: 42 Copynumber: 2.1 Consensus size: 43
50870535 AGATTTATGT
* * *
50870545 GTAAGACCATGTTTGGGACATCAGCATCG-TATTTGATTTCAA
1 GTAAGACCATATTTGGGACATCAGCATCGATACTTGATTACAA
* * *
50870587 GTAAGACCCTATTTGGGACAGT-GGCATCGATACTTGATTACAT
1 GTAAGACCATATTTGGGACA-TCAGCATCGATACTTGATTACAA
50870630 GTAAG
1 GTAAG
50870635 TCCACAACTG
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 24 0.60
43 16 0.40
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (43 bp):
GTAAGACCATATTTGGGACATCAGCATCGATACTTGATTACAA
Found at i:50881923 original size:25 final size:25
Alignment explanation
Indices: 50881849--50881937 Score: 90
Period size: 25 Copynumber: 3.6 Consensus size: 25
50881839 GTACATGTAT
*
50881849 GCTCATACGAGCT-ATGAATTGGTAT
1 GCTCATACGAGCTGA-GAATTGGTAA
* * ** *
50881874 GCTCTTACGAGTTGTCAATTAGTAA
1 GCTCATACGAGCTGAGAATTGGTAA
*
50881899 GCTCATACGAGCTGAGAATCGGTAA
1 GCTCATACGAGCTGAGAATTGGTAA
*
50881924 GCTCATAAGAGCTG
1 GCTCATACGAGCTG
50881938 TGGTGTGTTT
Statistics
Matches: 50, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (25 bp):
GCTCATACGAGCTGAGAATTGGTAA
Found at i:50883465 original size:84 final size:84
Alignment explanation
Indices: 50883297--50883457 Score: 225
Period size: 84 Copynumber: 1.9 Consensus size: 84
50883287 CGTAAATATT
* * * *
50883297 AAATATAATATTTACGAACTTACTCGTCAGATTTGTTGACCTCGAAACCACTGTTTCTGACACTA
1 AAATATAATATTTACGAACTTACTCGTCAGATTTGGTGACCTCGAAACCACTATTTCTAACACCA
50883362 CTAAAAAATGGGCCGTTAC
66 CTAAAAAATGGGCCGTTAC
* ** * *
50883381 AAATATAATATTTATGAACTTACTCGTTGGATTTGGTGGCAC-CGAAACCATTATTTCTAACACC
1 AAATATAATATTTACGAACTTACTCGTCAGATTTGGTGAC-CTCGAAACCACTATTTCTAACACC
50883445 ACTAAAAAATGGG
65 ACTAAAAAATGGG
50883458 TTGTTACAGT
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
84 66 0.99
85 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (84 bp):
AAATATAATATTTACGAACTTACTCGTCAGATTTGGTGACCTCGAAACCACTATTTCTAACACCA
CTAAAAAATGGGCCGTTAC
Done.