Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 152 of 284
Found at i:50890067 original size:42 final size:42
Alignment explanation
Indices: 50890011--50890094 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
50890001 ACAACCTGCA
* *
50890011 GGTCCGAATATAAGCTACACGATGCTGCTCACAAAAGCTGTG
1 GGTCCGAATATAAGCTACACAATGCTACTCACAAAAGCTGTG
* * **
50890053 GGTCTGAATGTAAGCTACACAATGCTACTCACACGAGCTGTG
1 GGTCCGAATATAAGCTACACAATGCTACTCACAAAAGCTGTG
50890095 CAGTATGCTC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.23
Consensus pattern (42 bp):
GGTCCGAATATAAGCTACACAATGCTACTCACAAAAGCTGTG
Found at i:50901286 original size:30 final size:30
Alignment explanation
Indices: 50901252--50901312 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
50901242 TCCTTAACTC
50901252 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
50901282 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
50901312 A
1 A
50901313 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:50908813 original size:32 final size:32
Alignment explanation
Indices: 50908772--50908834 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
50908762 AAGCAGTAAG
50908772 AAAGTTTTAAGAGGCTTAAGAAGGTTCTGACA
1 AAAGTTTTAAGAGGCTTAAGAAGGTTCTGACA
50908804 AAAGTTTTAAGAGGCTTAAGAAGGTTCTGAC
1 AAAGTTTTAAGAGGCTTAAGAAGGTTCTGAC
50908835 TGAGGCCCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.29
Consensus pattern (32 bp):
AAAGTTTTAAGAGGCTTAAGAAGGTTCTGACA
Found at i:50910811 original size:25 final size:25
Alignment explanation
Indices: 50910777--50910825 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
50910767 GGTAGGGTTG
*
50910777 TAACGCCCCAAAAATCTAAGTATTA
1 TAACGCCCCAAAAATCAAAGTATTA
50910802 TAACGCCCCAAAAATCAAAGTATT
1 TAACGCCCCAAAAATCAAAGTATT
50910826 TACTTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.45, C:0.24, G:0.08, T:0.22
Consensus pattern (25 bp):
TAACGCCCCAAAAATCAAAGTATTA
Found at i:50912141 original size:24 final size:24
Alignment explanation
Indices: 50912111--50912158 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
50912101 CTGAAAAATA
50912111 TGTCTATTGACATTACACGAGCGT
1 TGTCTATTGACATTACACGAGCGT
50912135 TGTCTATTGACATTACACGAGCGT
1 TGTCTATTGACATTACACGAGCGT
50912159 GCGCTCACTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (24 bp):
TGTCTATTGACATTACACGAGCGT
Found at i:50930657 original size:20 final size:20
Alignment explanation
Indices: 50930591--50930657 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
50930581 ATCTTAGTAA
*
50930591 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
50930611 ACATGACATGTATGCTATGC
1 ACATGATATGTATGATATGC
50930631 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
50930651 ACATGAT
1 ACATGAT
50930658 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:50930738 original size:23 final size:23
Alignment explanation
Indices: 50930708--50930780 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
50930698 AGGAAGTGCA
50930708 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50930731 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
50930754 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
50930778 AAA
1 AAA
50930781 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:50930797 original size:25 final size:24
Alignment explanation
Indices: 50930707--50930801 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
50930697 GAGGAAGTGC
50930707 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
50930731 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
50930754 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
50930778 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
50930802 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 31 0.48
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:50931030 original size:31 final size:31
Alignment explanation
Indices: 50930995--50931058 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
50930985 CGTTTACAGT
50930995 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
50931026 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
50931057 AA
1 AA
50931059 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:50931924 original size:88 final size:88
Alignment explanation
Indices: 50931822--50932004 Score: 348
Period size: 88 Copynumber: 2.1 Consensus size: 88
50931812 TTTGTTGTAT
*
50931822 ACACATTAATCATATTCTACACTCCAAACATACATGCCATCCGTCCCACTCATCAACCATAATCA
1 ACACATTAATCATATTCTACACTCCAAACATACATGCCATCCATCCCACTCATCAACCATAATCA
50931887 ACCATAACCACATTCAAGCATAA
66 ACCATAACCACATTCAAGCATAA
*
50931910 ACACATTAATCATATTCTACACTCCAAACATACATGCCATCCATCCCACTCATCAACCATTATCA
1 ACACATTAATCATATTCTACACTCCAAACATACATGCCATCCATCCCACTCATCAACCATAATCA
50931975 ACCATAACCACATTCAAGCATAA
66 ACCATAACCACATTCAAGCATAA
50931998 ACACATT
1 ACACATT
50932005 TGTATGGATG
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
88 93 1.00
ACGTcount: A:0.40, C:0.34, G:0.03, T:0.23
Consensus pattern (88 bp):
ACACATTAATCATATTCTACACTCCAAACATACATGCCATCCATCCCACTCATCAACCATAATCA
ACCATAACCACATTCAAGCATAA
Found at i:50934234 original size:93 final size:93
Alignment explanation
Indices: 50934127--50934297 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
50934117 GCCCCTAAGT
* *
50934127 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50934192 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
50934220 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50934285 CGAGTTCGGATGC
66 CGAGTTCGGATGC
50934298 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50934294 original size:46 final size:46
Alignment explanation
Indices: 50934122--50934294 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
50934112 AACCCGCCCC
* * *
50934122 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
50934168 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
50934216 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50934261 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50934295 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50934751 original size:30 final size:30
Alignment explanation
Indices: 50934717--50934776 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
50934707 ATTTAATACG
50934717 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
50934747 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
50934777 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:50950364 original size:42 final size:42
Alignment explanation
Indices: 50950305--50950416 Score: 161
Period size: 43 Copynumber: 2.6 Consensus size: 42
50950295 TAAGATTACG
*
50950305 TGTAAGACCATATCTGGGATTTGGCATCTATACGAGACTTCA
1 TGTAAGACCATATCTGGGATTTGGCATCGATACGAGACTTCA
* * *
50950347 TGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTTCA
1 TGTAAGACCATATCTGGGAT-TTGGCATCGATACGAGACTTCA
* *
50950390 TGTAAGACCATATATGGGATATGGCAT
1 TGTAAGACCATATCTGGGATTTGGCAT
50950417 TGGTATGGTA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 24 0.39
43 37 0.61
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATTTGGCATCGATACGAGACTTCA
Found at i:50956758 original size:42 final size:42
Alignment explanation
Indices: 50956697--50956810 Score: 156
Period size: 43 Copynumber: 2.7 Consensus size: 42
50956687 ACTAAGATTA
*
50956697 CGTGTAAGACCATATCTGGGATCTGGCATCTATACGAGACTT
1 CGTGTAAGACCATATCTGGGATCTGGCATCGATACGAGACTT
* * * *
50956739 CGTGTAAGACCATAGCTGGGCTACTAGCATCGATACGAGATTT
1 CGTGTAAGACCATATCTGGGAT-CTGGCATCGATACGAGACTT
* *
50956782 CATGTAAGACCATATCTGGGATATGGCAT
1 CGTGTAAGACCATATCTGGGATCTGGCAT
50956811 TGGTATGGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 25 0.41
43 36 0.59
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATCTGGCATCGATACGAGACTT
Found at i:50965718 original size:20 final size:20
Alignment explanation
Indices: 50965693--50965760 Score: 84
Period size: 20 Copynumber: 3.4 Consensus size: 20
50965683 GCTTGTACAG
* *
50965693 TGGTGCCTCTATTTGCAGTT
1 TGGTGCCTCTGTTTGCACTT
50965713 TGGTGCCTCTGTCTT-CACTT
1 TGGTGCCTCTGT-TTGCACTT
* *
50965733 TGGCGCCTCTGCTTGCACTT
1 TGGTGCCTCTGTTTGCACTT
50965753 TGGTGCCT
1 TGGTGCCT
50965761 TCGATTGCAC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 2 0.05
20 37 0.90
21 2 0.05
ACGTcount: A:0.06, C:0.28, G:0.25, T:0.41
Consensus pattern (20 bp):
TGGTGCCTCTGTTTGCACTT
Found at i:50968975 original size:46 final size:46
Alignment explanation
Indices: 50968923--50969236 Score: 169
Period size: 46 Copynumber: 6.7 Consensus size: 46
50968913 TGATATGTGT
50968923 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
*
50968969 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG---CATTGA-GACGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-ATGA-GA
* * * * * *** *
50969015 GTGCTAGTGTAAGACATGTCTAGGACATACATCAGCCTCGGGACGTA-A
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AGA
* ** * *
50969063 GCCAGTATAAGACATGTCTAAGACATGCATCGGCTACA--A-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* * * * * *
50969106 TGTCAGTGTAAGACCATGTTTGGGACATGGCGTCGG-CACGAATATGTGT
1 -GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGA
* ** * ** *
50969155 GCTAGTGTAAGACATGTCTAAGACATGCATCAGCCACATCGTGAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
* * *
50969201 GCTAGTTTAAGACCATGTCTGAGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
50969237 TTGATATGTG
Statistics
Matches: 205, Mismatches: 41, Indels: 42
0.71 0.14 0.15
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 11 0.05
45 19 0.09
46 77 0.38
47 54 0.26
48 37 0.18
49 3 0.01
50 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
Found at i:50969173 original size:138 final size:137
Alignment explanation
Indices: 50968923--50969270 Score: 366
Period size: 138 Copynumber: 2.5 Consensus size: 137
50968913 TGATATGTGT
* * * * *
50968923 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA-GCCAGTGTAAGACCATGT
1 GCCAGTATAAGACATGTCTGAGACATGCATCGGCTACA--A-GATATGTCAGTGTAAGACCATGT
* *
50968987 CTGGGACATGGCATCAGCATTGAGACGAGTGCTAGTGTAAGACATGTCTAGGACATACATCAGCC
63 CTGGGACATGGCATCAGCATCGAGACGAGTGCTAGTGTAAGACATGTCTAAGACATACATCAGCC
*
50969052 TCGGGA-CGT-AA
128 AC---ATCGTAAA
* *
50969063 GCCAGTATAAGACATGTCTAAGACATGCATCGGCTACAAGATATGTCAGTGTAAGACCATGTTTG
1 GCCAGTATAAGACATGTCTGAGACATGCATCGGCTACAAGATATGTCAGTGTAAGACCATGTCTG
* * * * * *
50969128 GGACATGGCGTCGGCA-CGAATATGTGTGCTAGTGTAAGACATGTCTAAGACATGCATCAGCCAC
66 GGACATGGCATCAGCATCG-AGACGAGTGCTAGTGTAAGACATGTCTAAGACATACATCAGCCAC
50969192 ATCGTGAAA
130 ATCGT-AAA
* * ** * *
50969201 GCTAGTTTAAGACCATGTCTGAGACATGGCATCGGCT-TGATATGTGTCAGTGTAAGACC-TGTC
1 GCCAGTATAAGA-CATGTCTGAGACAT-GCATCGGCTACAAGATATGTCAGTGTAAGACCATGTC
50969264 TGGGACA
64 TGGGACA
50969271 CAGCATTGAC
Statistics
Matches: 177, Mismatches: 24, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
135 1 0.01
136 3 0.02
137 4 0.02
138 95 0.54
139 31 0.18
140 43 0.24
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (137 bp):
GCCAGTATAAGACATGTCTGAGACATGCATCGGCTACAAGATATGTCAGTGTAAGACCATGTCTG
GGACATGGCATCAGCATCGAGACGAGTGCTAGTGTAAGACATGTCTAAGACATACATCAGCCACA
TCGTAAA
Found at i:50974418 original size:43 final size:46
Alignment explanation
Indices: 50974357--50974490 Score: 166
Period size: 43 Copynumber: 2.9 Consensus size: 46
50974347 GAAATTATAA
*
50974357 ATCCGAACTCGTTGAGTGGTCCGAGTTCATTATGGATGTG-A-G-C
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGTGCATGAC
*
50974400 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATGGATGCAATGCATGTAAC
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATG---TGCATG--AC
* *
50974451 ATCCTAGCTCGTTGAGTGGTCCGAGTTCGTTATGGATGTG
1 ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGTG
50974491 TTACATTATA
Statistics
Matches: 78, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
43 36 0.46
46 2 0.03
47 1 0.01
48 3 0.04
51 36 0.46
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.31
Consensus pattern (46 bp):
ATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGTGCATGAC
Found at i:50974511 original size:20 final size:22
Alignment explanation
Indices: 50974486--50974530 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
50974476 TTCGTTATGG
50974486 ATGTGTTACAT-TATAT-GAAA
1 ATGTGTTACATGTATATGGAAA
50974506 ATGTGTTACATGGTATATGGAAA
1 ATGTGTTACAT-GTATATGGAAA
50974529 AT
1 AT
50974531 TGAATTGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 11 0.50
22 5 0.23
23 6 0.27
ACGTcount: A:0.38, C:0.04, G:0.20, T:0.38
Consensus pattern (22 bp):
ATGTGTTACATGTATATGGAAA
Found at i:50983303 original size:30 final size:30
Alignment explanation
Indices: 50983267--50983329 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
50983257 GTTTATTTTA
50983267 TTGTTAATTTTGTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTGTTATTATTTTAGAA-GCAT
*
50983297 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTGTTATTATTTTAGAAGCAT
50983327 TTG
1 TTG
50983330 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.25, C:0.03, G:0.13, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAAGCAT
Found at i:50983467 original size:11 final size:11
Alignment explanation
Indices: 50983451--50983481 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
50983441 TATATATATT
50983451 TAAAAATTATA
1 TAAAAATTATA
*
50983462 TAAAAATAATA
1 TAAAAATTATA
50983473 TAAAAATTA
1 TAAAAATTA
50983482 ATACGGGCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:50986206 original size:22 final size:23
Alignment explanation
Indices: 50986171--50986223 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 23
50986161 AATTTTAAAT
50986171 ATATTTA-AATAA-TTAATATTAA
1 ATATTTATAATAATTTAAT-TTAA
*
50986193 TTATTTATAA-AATTTAATTTAA
1 ATATTTATAATAATTTAATTTAA
50986215 ATATATTAT
1 ATAT-TTAT
50986224 CTATATTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
ATATTTATAATAATTTAATTTAA
Found at i:50994641 original size:18 final size:18
Alignment explanation
Indices: 50994620--50994657 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
50994610 AATTTGAAAT
*
50994620 TTTTATAAA-TATTTTGAA
1 TTTTAAAAATTATTTT-AA
50994638 TTTTAAAAATTATTTTAA
1 TTTTAAAAATTATTTTAA
50994656 TT
1 TT
50994658 ATTTTGTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (18 bp):
TTTTAAAAATTATTTTAA
Found at i:50994660 original size:28 final size:29
Alignment explanation
Indices: 50994616--50994670 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
50994606 ATAAAATTTG
50994616 AAATTTTTATAAATATTTTG-AATTTTAA
1 AAATTTTTATAAATATTTTGTAATTTTAA
*
50994644 AAATTATTT-TAATTATTTTGTAATTTT
1 AAATT-TTTATAAATATTTTGTAATTTT
50994671 TGTTAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (29 bp):
AAATTTTTATAAATATTTTGTAATTTTAA
Found at i:50995174 original size:11 final size:11
Alignment explanation
Indices: 50995160--50995193 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
50995150 CCAAATTTGA
*
50995160 AATAAATAAAT
1 AATAAATTAAT
50995171 AATAAATTAAT
1 AATAAATTAAT
50995182 AA-AAATTAAT
1 AATAAATTAAT
50995192 AA
1 AA
50995194 ATACAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AATAAATTAAT
Found at i:51003398 original size:29 final size:29
Alignment explanation
Indices: 51003361--51003461 Score: 120
Period size: 29 Copynumber: 3.6 Consensus size: 29
51003351 TATGTGTGAC
* *
51003361 TGGGCCTAACGGGCCATATAAATGTTATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
*
51003390 TGGGTCTAATGGGCCATATACAA-GTGATT
1 TGGGCCTAATGGGCCATATA-AATGTGATT
*
51003419 TGGGCCTAATGGGCCATATAAATAT-A-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
51003446 TGGG-CTAAATGGGCCA
1 TGGGCCT-AATGGGCCA
51003462 GATACAGGTA
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
26 2 0.03
27 14 0.22
28 3 0.05
29 43 0.67
30 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:51013683 original size:23 final size:21
Alignment explanation
Indices: 51013632--51013684 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 21
51013622 CAATGAATCG
51013632 GCAAAAGCTGAAATGCCGAAA
1 GCAAAAGCTGAAATGCCGAAA
51013653 GCGGAAAAGCTGAAATGCCGAAAA
1 GC--AAAAGCTGAAATGCCG-AAA
51013677 GTCAAAAG
1 G-CAAAAG
51013685 TTGGGCTGCG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
21 2 0.07
23 21 0.75
24 4 0.14
25 1 0.04
ACGTcount: A:0.47, C:0.17, G:0.26, T:0.09
Consensus pattern (21 bp):
GCAAAAGCTGAAATGCCGAAA
Found at i:51013824 original size:18 final size:19
Alignment explanation
Indices: 51013790--51013827 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
51013780 AGGATTGGCC
51013790 AAATGGGCCGGAATGGGCT
1 AAATGGGCCGGAATGGGCT
*
51013809 AAATGGGCC-TAATGGGCT
1 AAATGGGCCGGAATGGGCT
51013827 A
1 A
51013828 TTGAGCCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.29, C:0.16, G:0.37, T:0.18
Consensus pattern (19 bp):
AAATGGGCCGGAATGGGCT
Found at i:51013939 original size:29 final size:29
Alignment explanation
Indices: 51013907--51014010 Score: 79
Period size: 29 Copynumber: 3.6 Consensus size: 29
51013897 ATAATATGAT
* * * *
51013907 TTGGGCCTGATGGGCTATATGAATGTGAA
1 TTGGGCCTGATGGGCCATAAGAATATAAA
51013936 TTGGGCCT-AGTGGGCCATAAGAATATAAA
1 TTGGGCCTGA-TGGGCCATAAGAATATAAA
* * * ** *
51013965 CTGGGCCAGATGGGTCATTTGAATA-AGA
1 TTGGGCCTGATGGGCCATAAGAATATAAA
51013993 TTGGGCCT-AGTGGGCCAT
1 TTGGGCCTGA-TGGGCCAT
51014011 GTGACAGTCC
Statistics
Matches: 59, Mismatches: 13, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
27 1 0.02
28 16 0.27
29 41 0.69
30 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.33, T:0.27
Consensus pattern (29 bp):
TTGGGCCTGATGGGCCATAAGAATATAAA
Found at i:51014808 original size:47 final size:47
Alignment explanation
Indices: 51014749--51015048 Score: 519
Period size: 47 Copynumber: 6.4 Consensus size: 47
51014739 GATGTACAAG
*
51014749 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
51014796 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
51014843 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
51014890 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
51014937 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * * * * * *
51014984 GTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
51015031 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
51015049 TCCCGAAGGG
Statistics
Matches: 242, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 242 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
Found at i:51024215 original size:79 final size:81
Alignment explanation
Indices: 51024079--51024263 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
51024069 TTGAATGATG
*
51024079 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
51024143 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
51024158 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
51024220 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
51024238 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51024264 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:51024277 original size:40 final size:40
Alignment explanation
Indices: 51024080--51024263 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
51024070 TGAATGATGT
* * * *
51024080 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
51024120 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
51024160 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51024198 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51024239 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51024264 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:51024285 original size:79 final size:79
Alignment explanation
Indices: 51024132--51024296 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
51024122 GGACTAAGAT
* **
51024132 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
51024197 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
51024211 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
51024274 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
51024290 CCGAAGG
1 CCGAAGG
51024297 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:51027058 original size:16 final size:16
Alignment explanation
Indices: 51027037--51027069 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
51027027 TTGTAACGCC
*
51027037 CCAAAAATCTCAAAAT
1 CCAAAAATCCCAAAAT
51027053 CCAAAAATCCCAAAAT
1 CCAAAAATCCCAAAAT
51027069 C
1 C
51027070 TTGAAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.30, G:0.00, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCAAAAT
Found at i:51028341 original size:24 final size:23
Alignment explanation
Indices: 51028309--51028356 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
51028299 GATAAATGCC
*
51028309 GAAATGCCGAAAAGCTGAAAAGTT
1 GAAATGCCGAAAAGCCG-AAAGTT
51028333 GAAATGCCGAAAAGCCGAAAGTT
1 GAAATGCCGAAAAGCCGAAAGTT
51028356 G
1 G
51028357 GGCTATGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.44, C:0.15, G:0.27, T:0.15
Consensus pattern (23 bp):
GAAATGCCGAAAAGCCGAAAGTT
Found at i:51028352 original size:16 final size:16
Alignment explanation
Indices: 51028302--51028352 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
51028292 ATGAATCGAT
*
51028302 AAATGCCGAAATGCCG
1 AAATGCCGAAAAGCCG
* * **
51028318 AAAAGCTGAAAAGTTG
1 AAATGCCGAAAAGCCG
51028334 AAATGCCGAAAAGCCG
1 AAATGCCGAAAAGCCG
51028350 AAA
1 AAA
51028353 GTTGGGCTAT
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.47, C:0.18, G:0.24, T:0.12
Consensus pattern (16 bp):
AAATGCCGAAAAGCCG
Found at i:51033479 original size:278 final size:266
Alignment explanation
Indices: 51032994--51033539 Score: 930
Period size: 278 Copynumber: 2.0 Consensus size: 266
51032984 ATGCTAGTTT
*
51032994 AGGAAAAATTCGGTCAAGTGTTCATGAGATGAAAATATGTGTGTAAATGAATTAAAAATGATATT
1 AGGAAAAATTCGGTCAAGTGTTCATGAGATGAAAATATGTCTGTAAATGAATTAAAAATGATATT
*
51033059 GTATATTCGGCCATCTAATTAAGTACATAGGTGATGTTGAATTTAATTTTTGCACATTCGGCTAT
66 GTATATTCAGCCATCTAATTAAGTACATAGGTGATGTTGAATTTAATTTTTGCACATTCGGCTAT
51033124 ATAGGTATGCCCAATTGTGATATTACCTTTGATTATATATAATCAACTAAATGAGTAATGTTGGC
131 ATAGGTATGCCCAATTGTGATATTACCTTTGATTATATATAATCAACTAAATGAGTAATGTTGGC
51033189 TTATAAGTTGAGTTTGATTCATGATTATATATATATTTGAATGTAAACCTATTTGAGATAATGTT
196 TTATAAGTTGAGTTTGATTCATGATTATATATATATTTGAATGTAAACCTATTTGAGATAATGTT
51033254 ATGTTG
261 ATGTTG
*
51033260 AGGAAAAATTCGGTCAAGTGTTCATGAGATGAAACTATGTCTGTAAATGAATTAAAAATAATATT
1 AGGAAAAATTCGGTCAAGTGTTCATGAGATGAAAATATGTCTGTAAATGAA-T-----T-A-A--
51033325 ATAATTGATATTGTATATTCAGCCATCTAATTAAGTACATAGGTGATGTTGAATTTAATTTTTGC
56 A-AA-TGATATTGTATATTCAGCCATCTAATTAAGTACATAGGTGATGTTGAATTTAATTTTTGC
* *
51033390 ACATTCGGCTATATAGGTATGCCCATTTGTGATATTACCTTTGATTATATATAATCGACTAAATG
119 ACATTCGGCTATATAGGTATGCCCAATTGTGATATTACCTTTGATTATATATAATCAACTAAATG
*
51033455 AGTGATGTTGGCTTATAAGTTGAGTTTGATTCATGATTATATATATATTTGAATGTAAACCTATT
184 AGTAATGTTGGCTTATAAGTTGAGTTTGATTCATGATTATATATATATTTGAATGTAAACCTATT
51033520 TGAGATAATGTTATGTTG
249 TGAGATAATGTTATGTTG
51033538 AG
1 AG
51033540 TAGTGACGAT
Statistics
Matches: 262, Mismatches: 6, Indels: 12
0.94 0.02 0.04
Matches are distributed among these distances:
266 49 0.19
267 1 0.00
272 1 0.00
273 1 0.00
274 1 0.00
276 1 0.00
277 2 0.01
278 206 0.79
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (266 bp):
AGGAAAAATTCGGTCAAGTGTTCATGAGATGAAAATATGTCTGTAAATGAATTAAAAATGATATT
GTATATTCAGCCATCTAATTAAGTACATAGGTGATGTTGAATTTAATTTTTGCACATTCGGCTAT
ATAGGTATGCCCAATTGTGATATTACCTTTGATTATATATAATCAACTAAATGAGTAATGTTGGC
TTATAAGTTGAGTTTGATTCATGATTATATATATATTTGAATGTAAACCTATTTGAGATAATGTT
ATGTTG
Found at i:51034252 original size:94 final size:94
Alignment explanation
Indices: 51034089--51034464 Score: 707
Period size: 94 Copynumber: 4.0 Consensus size: 94
51034079 AATGTGACCG
* * *
51034089 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCA
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
51034154 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
51034183 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
51034248 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
51034277 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
51034342 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
51034371 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
51034436 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
51034465 GAATGTCGAT
Statistics
Matches: 277, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 277 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:51034525 original size:24 final size:24
Alignment explanation
Indices: 51034493--51034556 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
51034483 GAAAATTTCA
* *
51034493 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
51034517 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
51034541 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
51034557 ATTTGGTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:51050833 original size:19 final size:20
Alignment explanation
Indices: 51050806--51050845 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
51050796 CAACTAACAT
*
51050806 AGAACTCTTGACATGGCATA
1 AGAACTCTTGACATGGAATA
*
51050826 AGAA-TCTTGAGATGGAATA
1 AGAACTCTTGACATGGAATA
51050845 A
1 A
51050846 TAATGACTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (20 bp):
AGAACTCTTGACATGGAATA
Found at i:51053565 original size:22 final size:21
Alignment explanation
Indices: 51053516--51053567 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
51053506 CAGCCTGTAG
* *
51053516 CACGAGCGTGTCCCAGGATCA
1 CACGGGCGTGTCCCAGGACCA
* *
51053537 CATGGGCGTGTCCCTTGGACCA
1 CACGGGCGTGTCCC-AGGACCA
51053559 CACGGGCGT
1 CACGGGCGT
51053568 AAGCCCTGCA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (21 bp):
CACGGGCGTGTCCCAGGACCA
Found at i:51055866 original size:30 final size:30
Alignment explanation
Indices: 51055830--51055889 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
51055820 ACTTAACAAG
*
51055830 CAAATGCCTCTAAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
*
51055860 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
51055890 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:51055969 original size:11 final size:11
Alignment explanation
Indices: 51055929--51055968 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
51055919 ACAATAACAA
51055929 CAAAATAATAG
1 CAAAATAATAG
*
51055940 CAACATAATAG
1 CAAAATAATAG
* *
51055951 TAAAATAGTAG
1 CAAAATAATAG
51055962 CAAAATA
1 CAAAATA
51055969 GGGAGAAAAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (11 bp):
CAAAATAATAG
Found at i:51058286 original size:41 final size:45
Alignment explanation
Indices: 51058229--51058356 Score: 129
Period size: 45 Copynumber: 2.9 Consensus size: 45
51058219 TCAATGGCAC
* * * **
51058229 TGTCCCAGACAGGGTCTTACACG-AATC-GA-ATA-CGATGCTGA
1 TGTCCCAGACATGGTCTTACACGTAACCACATATATCGATGCCAA
*
51058270 TGTCCCAGACATGGTCTTACATGTAACCACATATATCGATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAACCACATATATCGATGCCAA
* ** * *
51058315 TGTCCCAGACGTGGTCTTACACAAAAACACATATATTGATGC
1 TGTCCCAGACATGGTCTTACACGTAACCACATATATCGATGC
51058357 TGACTTCCCA
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
41 21 0.30
42 3 0.04
43 1 0.01
44 3 0.04
45 43 0.61
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (45 bp):
TGTCCCAGACATGGTCTTACACGTAACCACATATATCGATGCCAA
Found at i:51058346 original size:45 final size:46
Alignment explanation
Indices: 51058261--51058393 Score: 146
Period size: 45 Copynumber: 3.0 Consensus size: 46
51058251 GAATCGAATA
* * * *
51058261 CGATGCT-GATGTCCCAGACATGGTCTTACATGTAACCACATATAT
1 CGATGCTCAATGTCCCAGACGTGGTCTTACATGAAAACACATATAT
**
51058306 CGATGC-CAATGTCCCAGACGTGGTCTTACACAAAAACACATATAT
1 CGATGCTCAATGTCCCAGACGTGGTCTTACATGAAAACACATATAT
* * * * *
51058351 TGATGCTGACT-TCCCAAATGTGGTCTTACATGAAAACACATAT
1 CGATGCTCAATGTCCCAGACGTGGTCTTACATGAAAACACATAT
51058394 CGATATCCCA
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
45 71 0.97
46 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (46 bp):
CGATGCTCAATGTCCCAGACGTGGTCTTACATGAAAACACATATAT
Found at i:51062652 original size:33 final size:33
Alignment explanation
Indices: 51062606--51062673 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
51062596 TCGTAAGGTG
*
51062606 ATGTCGGGGTTACCAGTCCAGGCTAAATCCCTT
1 ATGTCGGGATTACCAGTCCAGGCTAAATCCCTT
51062639 ATGTCGGGATTACCAGTCCAGGCTAAATCCCTT
1 ATGTCGGGATTACCAGTCCAGGCTAAATCCCTT
51062672 AT
1 AT
51062674 AGCCACAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (33 bp):
ATGTCGGGATTACCAGTCCAGGCTAAATCCCTT
Found at i:51067763 original size:29 final size:29
Alignment explanation
Indices: 51067730--51067787 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
51067720 ACTTAATGGG
51067730 TGTGCTTTATCCATGTAAAATTTCTTTAA
1 TGTGCTTTATCCATGTAAAATTTCTTTAA
51067759 TGTGCTTTATCCATGTAAAATTTCTTTAA
1 TGTGCTTTATCCATGTAAAATTTCTTTAA
51067788 CATCTTTTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.14, G:0.10, T:0.48
Consensus pattern (29 bp):
TGTGCTTTATCCATGTAAAATTTCTTTAA
Found at i:51068255 original size:26 final size:26
Alignment explanation
Indices: 51068226--51068277 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
51068216 TAGGATGTAA
51068226 CAACATACATTAGATGTATGTCAAGT
1 CAACATACATTAGATGTATGTCAAGT
*
51068252 CAACATCCATTAGATGTATGTCAAGT
1 CAACATACATTAGATGTATGTCAAGT
51068278 TTTTCACGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (26 bp):
CAACATACATTAGATGTATGTCAAGT
Found at i:51071319 original size:43 final size:43
Alignment explanation
Indices: 51071272--51071365 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
51071262 ACGGCTTGTG
* *
51071272 ACACGGGCATGTCTGGTGGCCGTGTGAGACACACGGCTGGGCT
1 ACACGGGCATGTCTGGTGGCCATGTGAGACACACGGCCGGGCT
* * *
51071315 ACACGGGCATGTCTGGTGGCTATGTGAGACACATGGCCGTGCT
1 ACACGGGCATGTCTGGTGGCCATGTGAGACACACGGCCGGGCT
51071358 ACACGGGC
1 ACACGGGC
51071366 GTATGTCCTC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.18, C:0.26, G:0.37, T:0.19
Consensus pattern (43 bp):
ACACGGGCATGTCTGGTGGCCATGTGAGACACACGGCCGGGCT
Found at i:51075472 original size:41 final size:43
Alignment explanation
Indices: 51075427--51075580 Score: 190
Period size: 43 Copynumber: 3.7 Consensus size: 43
51075417 TGTGATGACA
*
51075427 TGTAAGACCATGTCTGGGACAATGGCATTG-TAT-TGATTACG
1 TGTAAGACCATGTCTGGGACAATGGCATCGATATATGATTACG
* *
51075468 TGTAAGACCATGTCTGGGACATTGGCATCGTTATATGATCT-CG
1 TGTAAGACCATGTCTGGGACAATGGCATCGATATATGAT-TACG
* * * *
51075511 TGTAAGACCCTGTCTGGGACAATGGCATCGATATGTGATAACA
1 TGTAAGACCATGTCTGGGACAATGGCATCGATATATGATTACG
* *
51075554 TGTAAGACCATATCTGGGA-TATGGCAT
1 TGTAAGACCATGTCTGGGACAATGGCAT
51075581 TGTACGAGTT
Statistics
Matches: 98, Mismatches: 11, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
41 28 0.29
42 10 0.10
43 59 0.60
44 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAATGGCATCGATATATGATTACG
Found at i:51077127 original size:13 final size:13
Alignment explanation
Indices: 51077109--51077136 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
51077099 GGCGTGTCTG
51077109 GTACACATGCTAC
1 GTACACATGCTAC
51077122 GTACACATGCTAC
1 GTACACATGCTAC
51077135 GT
1 GT
51077137 TAATCCAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (13 bp):
GTACACATGCTAC
Found at i:51083732 original size:27 final size:27
Alignment explanation
Indices: 51083702--51083879 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51083692 ATATTGAGTC
* * * *
51083702 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51083729 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51083756 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
51083784 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51083811 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51083838 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51083865 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51083880 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51083841 original size:82 final size:81
Alignment explanation
Indices: 51083723--51083878 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51083713 TGCTATATAA
* *
51083723 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51083788 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51083805 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51083869 CACTTAGTGC
65 CACTTAGTGC
51083879 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51091795 original size:27 final size:27
Alignment explanation
Indices: 51091765--51091942 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51091755 ATATTGAGTC
* * * *
51091765 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51091792 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51091819 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
51091847 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51091874 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51091901 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51091928 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51091943 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51091904 original size:82 final size:81
Alignment explanation
Indices: 51091786--51091941 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51091776 TGCTATATAA
* *
51091786 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51091851 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51091868 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51091932 CACTTAGTGC
65 CACTTAGTGC
51091942 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51096776 original size:48 final size:47
Alignment explanation
Indices: 51096723--51096949 Score: 177
Period size: 46 Copynumber: 4.9 Consensus size: 47
51096713 CCACATTATG
* *
51096723 AGAGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACA
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGA-A
* * *
51096771 AGAGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGACCTCGAGATGTA
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGA---A
* *
51096819 AG-GC-AGTGTAAGA-CGTCTCTGGGACAT-GCATCGGC-TACGAG-A
1 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGAA
* * * *
51096861 TGTG-TCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA-CGTATAA
1 AGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCG-AGAA
* * * *
51096908 AGGTGCCAATATAAGACCATGTCTGGGACATGGCATCGGCAT
1 A-GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
51096950 GTAAAACCAT
Statistics
Matches: 145, Mismatches: 20, Indels: 27
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.01
43 1 0.01
44 9 0.06
45 15 0.10
46 51 0.35
47 16 0.11
48 51 0.35
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (47 bp):
AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGAA
Found at i:51096829 original size:46 final size:44
Alignment explanation
Indices: 51096677--51096896 Score: 151
Period size: 46 Copynumber: 4.8 Consensus size: 44
51096667 GGGTTATTTG
* * *
51096677 TGTGCCAGTGTAAGACATGTCTAGGACATGCATCGGCC-AC-ATTA
1 TGTGGCAGTGTAAGACATGTCTGGGACATGCATC-GCCTACGA-GA
* * * *
51096721 TGAGAGCTAATGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGA
1 TGTG-GC-AGTGTAAGA-CATGTCTGGGACAT-GCATCGCCTA-CGAGA
*** *
51096769 CAAGAGCTAGTGTAAGACATGTTTGGGACATGCATCGACCT-CGAGA
1 TGTG-GC-AGTGTAAGACATGTCTGGGACATGCATCG-CCTACGAGA
* * *
51096815 TGTAAGGCAGTGTAAGACGTCTCTGGGACATGCATCGGCTACGAGA
1 TGT--GGCAGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGA
*
51096861 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATC
1 TGTGGCAGTGTAAGA-CATGTCTGGGACAT-GCATC
51096897 AGCACGTATA
Statistics
Matches: 140, Mismatches: 23, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
44 14 0.10
45 15 0.11
46 57 0.41
47 32 0.23
48 21 0.15
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (44 bp):
TGTGGCAGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGA
Found at i:51101298 original size:40 final size:40
Alignment explanation
Indices: 51101268--51101650 Score: 415
Period size: 40 Copynumber: 9.6 Consensus size: 40
51101258 GCTACTCATT
*
51101268 CAAATGCCTTCGAGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCA
*
51101308 CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGGA
1 CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCA
* *
51101348 CAAATGCCTTCGGGACTTAGCCCGGTTATAGCAACTCGCA
1 CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCA
* *
51101388 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGAGACTTAGCCCGG-TTATAGTAACTCGCA
* * * *
51101428 CCAATGCCTTCG-GGCTTAGCCCGG-AATTAGTAACTCGGA
1 CAAATGCCTTCGAGACTTAGCCCGGTTA-TAGTAACTCGCA
* *
51101467 CAAATGCCTTCG-GATCTTAGTCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGAGA-CTTAGCCCGGTTATAGTAACTCGCA
* *
51101507 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGAGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
51101547 CCAATGCCTTCG-GGCTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGAGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * * *
51101586 CAAATGCCTTCG-GATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGAGA-CTTAGCCCGGTTATAGTAAC-TCGCA
* *
51101627 CAAA-GCCTTCGGGACTCAGCCCGG
1 CAAATGCCTTCGAGACTTAGCCCGG
51101651 ACATCATTCA
Statistics
Matches: 295, Mismatches: 35, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
39 67 0.23
40 211 0.72
41 17 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:51101503 original size:119 final size:119
Alignment explanation
Indices: 51101268--51101651 Score: 551
Period size: 119 Copynumber: 3.2 Consensus size: 119
51101258 GCTACTCATT
* * * * *
51101268 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCG-GGCTTAGCCCG
* * * *
51101332 G-TTATAGTAACTCGGACAAATGCCTTCGGGA-CTTAGCCCGGTTATAGCAACTCGCA
64 GAAT-TAGTAACTCGGACAAATGCCTTC-GGATCTTAGTCCGGATATAGTAACTCGCA
51101388 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA
51101453 ATTAGTAACTCGGACAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTCGCA
66 ATTAGTAACTCGGACAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTCGCA
51101507 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA
* * * * *
51101572 ATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCTGGATATGGTCACTTAGCA
66 ATTAGTAACTCGGACAAATGCCTTCGGATCTTAGTCCGGATATAGTAAC-TCGCA
* *
51101627 CAAA-GCCTTCGGGACTCAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51101652 CATCATTCAA
Statistics
Matches: 244, Mismatches: 16, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
118 3 0.01
119 185 0.76
120 54 0.22
121 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGA
ATTAGTAACTCGGACAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTCGCA
Found at i:51109539 original size:79 final size:78
Alignment explanation
Indices: 51109437--51109660 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 78
51109427 GCTCCTCGTT
* *
51109437 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
51109502 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
51109517 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
51109581 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
51109595 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
51109659 GA
63 GA
51109661 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
78 36 0.29
79 56 0.44
80 34 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:51109554 original size:39 final size:40
Alignment explanation
Indices: 51109437--51109660 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
51109427 GCTCCTCGTT
* *
51109437 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
51109477 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
51109517 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
51109556 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
51109595 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
51109636 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51109661 CATCATTCAA
Statistics
Matches: 168, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 72 0.43
40 78 0.46
41 16 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:51112727 original size:79 final size:81
Alignment explanation
Indices: 51112625--51112809 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
51112615 GCTCCTCGTT
* *
51112625 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
51112688 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
51112705 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
51112769 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
51112785 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51112810 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:51112809 original size:40 final size:40
Alignment explanation
Indices: 51112625--51112809 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
51112615 GCTCCTCGTT
* *
51112625 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51112665 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
51112705 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
51112744 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
51112785 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51112810 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:51114415 original size:61 final size:61
Alignment explanation
Indices: 51114344--51114471 Score: 238
Period size: 61 Copynumber: 2.1 Consensus size: 61
51114334 GCTAACCTCA
51114344 TGTTGTTGTCGTTTGATAAATTTGATGTAATCCTTGGAATGGATTGGTTAACTTCTCATAG
1 TGTTGTTGTCGTTTGATAAATTTGATGTAATCCTTGGAATGGATTGGTTAACTTCTCATAG
* *
51114405 TGTTGTTGTCGTTTGATGAATTTGATGTAATCCTTGGAATGGATTGGTTAACTTTTCATAG
1 TGTTGTTGTCGTTTGATAAATTTGATGTAATCCTTGGAATGGATTGGTTAACTTCTCATAG
51114466 TGTTGT
1 TGTTGT
51114472 AGTGGACTGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 65 1.00
ACGTcount: A:0.21, C:0.09, G:0.24, T:0.46
Consensus pattern (61 bp):
TGTTGTTGTCGTTTGATAAATTTGATGTAATCCTTGGAATGGATTGGTTAACTTCTCATAG
Found at i:51119611 original size:42 final size:41
Alignment explanation
Indices: 51119565--51119686 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 41
51119555 TACCGTACCA
*
51119565 ATGCTATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCTATATCCCAGATATGGTCTTACA-GTAATCTCATATCG
* * ** * *
51119607 ATGCTAATAGCCCAGCTATGGTCTTACACAAAGTGTCATATTG
1 ATGCT-ATATCCCAGATATGGTCTTACAGTAA-TCTCATATCG
* *
51119650 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCA
1 ATGCTATATCCCAGATATGGTCTTACA-GTAATCTCA
51119687 GTAACCCTAA
Statistics
Matches: 63, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
42 30 0.48
43 33 0.52
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (41 bp):
ATGCTATATCCCAGATATGGTCTTACAGTAATCTCATATCG
Found at i:51121692 original size:20 final size:21
Alignment explanation
Indices: 51121645--51121692 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
51121635 ACTGCCTGTA
*
51121645 ACACGGGCGTGTCCCAGGGAC
1 ACACGAGCGTGTCCCAGGGAC
51121666 ACACGAGCGTGTCCCTA-GGAC
1 ACACGAGCGTGTCCC-AGGGAC
51121687 -CACGAG
1 ACACGAG
51121693 GGCGTGTGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 6 0.24
21 18 0.72
22 1 0.04
ACGTcount: A:0.23, C:0.33, G:0.33, T:0.10
Consensus pattern (21 bp):
ACACGAGCGTGTCCCAGGGAC
Found at i:51123171 original size:15 final size:14
Alignment explanation
Indices: 51123094--51123175 Score: 53
Period size: 14 Copynumber: 5.7 Consensus size: 14
51123084 TAATTCATAT
51123094 TTTAATAATAATTA
1 TTTAATAATAATTA
*
51123108 TATTAATAAT-GTTA
1 T-TTAATAATAATTA
* *
51123122 TTAAATTATATATTA
1 TTTAATAATA-ATTA
* *
51123137 TTTTATTAA-ATTGTA
1 -TTTAATAATAAT-TA
51123152 TTTAATAATAATTA
1 TTTAATAATAATTA
51123166 TGTTAA-AATA
1 T-TTAATAATA
51123176 TGATTAAATT
Statistics
Matches: 51, Mismatches: 10, Indels: 14
0.68 0.13 0.19
Matches are distributed among these distances:
13 6 0.12
14 20 0.39
15 20 0.39
16 5 0.10
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (14 bp):
TTTAATAATAATTA
Found at i:51123216 original size:62 final size:61
Alignment explanation
Indices: 51123013--51123225 Score: 237
Period size: 62 Copynumber: 3.5 Consensus size: 61
51123003 AATTAAATTA
*
51123013 TATATTATTCTATTAAATTGTA-TT--TAATAATTATGTTAAAATATGATTAAATTATTTA-T
1 TATATT-TT-TATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAAATTATTTATT
* * * * *
51123072 TATGATTTTTGTT-AATTCATATTTTAATAATAATTATATTAATAATGTTATTAAATTA--TATA
1 TAT-ATTTTTATTAAATT-ATA-TTTAATAATAATTATGTTAA-AATATGATTAAATTATTTATT
*
51123134 T-TA-TTTTATTAAATTGTATTTAATAATAATTATGTTAAAATATGATTAAATTATTTAATT
1 TATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAAATTATTT-ATT
51123194 TATATTTTTATTAAATTATATTTAATAATAAT
1 TATATTTTTATTAAATTATATTTAATAATAAT
51123226 CTTATTAAAA
Statistics
Matches: 127, Mismatches: 13, Indels: 25
0.77 0.08 0.15
Matches are distributed among these distances:
57 17 0.13
58 24 0.19
59 14 0.11
60 13 0.10
61 5 0.04
62 41 0.32
63 13 0.10
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (61 bp):
TATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATATGATTAAATTATTTATT
Found at i:51123232 original size:120 final size:117
Alignment explanation
Indices: 51122990--51123241 Score: 361
Period size: 120 Copynumber: 2.1 Consensus size: 117
51122980 TTTGTCTAAA
51122990 ATATTAAGAATGTAATTAAATTATATATTATTCTATTAAATTGTATTTAATAATTATGTTAAAAT
1 ATATTAAGAATGTAATTAAATTATATATTATTCTATTAAATTGTATTTAATAATTATGTTAAAAT
*
51123055 ATGATTAAATTATTTATTATGATTTTTGTTAATTCATATTTTAATAATAATT
66 ATGATTAAATTATTTATTATGATTTTTATTAATTCATATTTTAATAATAATT
* * *
51123107 ATATTAATAATGTTATTAAATTATATATTATTTTATTAAATTGTATTTAATAATAATTATGTTAA
1 ATATTAAGAATGTAATTAAATTATATATTATTCTATTAAATTGTA-TT--TAATAATTATGTTAA
51123172 AATATGATTAAATTATTTAATTTAT-ATTTTTATTAAATT-ATA-TTTAATAATAATCT
63 AATATGATTAAATTATTT-A-TTATGATTTTTATT-AATTCATATTTTAATAATAAT-T
*
51123228 -TATTAA-AATTTAAT
1 ATATTAAGAATGTAAT
51123242 AACAATAACA
Statistics
Matches: 122, Mismatches: 6, Indels: 12
0.87 0.04 0.09
Matches are distributed among these distances:
117 42 0.34
118 2 0.02
119 6 0.05
120 51 0.42
121 13 0.11
122 8 0.07
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.52
Consensus pattern (117 bp):
ATATTAAGAATGTAATTAAATTATATATTATTCTATTAAATTGTATTTAATAATTATGTTAAAAT
ATGATTAAATTATTTATTATGATTTTTATTAATTCATATTTTAATAATAATT
Found at i:51131654 original size:14 final size:15
Alignment explanation
Indices: 51131637--51131673 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
51131627 AGCTGGCAGT
51131637 GAGGAGAAAA-AAGA
1 GAGGAGAAAAGAAGA
51131651 GAGG-GAAAAGAAGA
1 GAGGAGAAAAGAAGA
51131665 GAGGAGAAA
1 GAGGAGAAA
51131674 GAAAAGAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 5 0.24
14 12 0.57
15 4 0.19
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (15 bp):
GAGGAGAAAAGAAGA
Found at i:51131978 original size:15 final size:15
Alignment explanation
Indices: 51131955--51131990 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
51131945 TTAAGTTGAA
51131955 TTAAGTGAAAATTTT
1 TTAAGTGAAAATTTT
*
51131970 TTAATTGAAAATTTT
1 TTAAGTGAAAATTTT
51131985 TTAAGT
1 TTAAGT
51131991 TAATTGAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (15 bp):
TTAAGTGAAAATTTT
Found at i:51132828 original size:149 final size:150
Alignment explanation
Indices: 51132628--51132902 Score: 446
Period size: 149 Copynumber: 1.8 Consensus size: 150
51132618 AAATAATTTT
* *
51132628 TTATTAGAATAATGTTCTCGAGAAAAAAAATAATGTCAATATTTTCATTGAAATAGTTATTAATA
1 TTATTAGAATAATGTTCTCAAGAAAAAAAATAATGTCAATATTTTCATTGAAATAGTTAATAATA
* *
51132693 TTTAACTATTTAAACTAATTAATGATAGAGAATCAAATTATATTAAAAATTAAAGTATATAGATT
66 TTTAACTATTTAAACAAACTAATGATAGAGAATCAAATTATATTAAAAATTAAAGTATATAGATT
51132758 GAATCTTAAATTTTAGCATA
131 GAATCTTAAATTTTAGCATA
* * *
51132778 TTATTAGAATAATGTTTTCAAG-AAAAAAATAATGT-AAGTATTTTGATTGAAATATTTAATAAT
1 TTATTAGAATAATGTTCTCAAGAAAAAAAATAATGTCAA-TATTTTCATTGAAATAGTTAATAAT
* *
51132841 ATTTAACTATTTAAACAAACTAATGATAGAGGATCAAATTATATTAGAAATTAAAGTATATA
65 ATTTAACTATTTAAACAAACTAATGATAGAGAATCAAATTATATTAAAAATTAAAGTATATA
51132903 TATTAAAATT
Statistics
Matches: 115, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
148 2 0.02
149 93 0.81
150 20 0.17
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (150 bp):
TTATTAGAATAATGTTCTCAAGAAAAAAAATAATGTCAATATTTTCATTGAAATAGTTAATAATA
TTTAACTATTTAAACAAACTAATGATAGAGAATCAAATTATATTAAAAATTAAAGTATATAGATT
GAATCTTAAATTTTAGCATA
Found at i:51133319 original size:15 final size:15
Alignment explanation
Indices: 51133296--51133331 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
51133286 TTAAGTTGAA
51133296 TTAAGTGAAAATTTT
1 TTAAGTGAAAATTTT
*
51133311 TTAATTGAAAATTTT
1 TTAAGTGAAAATTTT
51133326 TTAAGT
1 TTAAGT
51133332 TAATTGAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (15 bp):
TTAAGTGAAAATTTT
Found at i:51134169 original size:149 final size:150
Alignment explanation
Indices: 51133969--51134243 Score: 446
Period size: 149 Copynumber: 1.8 Consensus size: 150
51133959 AAATAATTTT
* *
51133969 TTATTAGAATAATGTTCTCGAGAAAAAAAATAATGTCAATATTTTCATTGAAATAGTTATTAATA
1 TTATTAGAATAATGTTCTCAAGAAAAAAAATAATGTCAATATTTTCATTGAAATAGTTAATAATA
* *
51134034 TTTAACTATTTAAACTAATTAATGATAGAGAATCAAATTATATTAAAAATTAAAGTATATAGATT
66 TTTAACTATTTAAACAAACTAATGATAGAGAATCAAATTATATTAAAAATTAAAGTATATAGATT
51134099 GAATCTTAAATTTTAGCATA
131 GAATCTTAAATTTTAGCATA
* * *
51134119 TTATTAGAATAATGTTTTCAAG-AAAAAAATAATGT-AAGTATTTTGATTGAAATATTTAATAAT
1 TTATTAGAATAATGTTCTCAAGAAAAAAAATAATGTCAA-TATTTTCATTGAAATAGTTAATAAT
* *
51134182 ATTTAACTATTTAAACAAACTAATGATAGAGGATCAAATTATATTAGAAATTAAAGTATATA
65 ATTTAACTATTTAAACAAACTAATGATAGAGAATCAAATTATATTAAAAATTAAAGTATATA
51134244 TATTAAAATT
Statistics
Matches: 115, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
148 2 0.02
149 93 0.81
150 20 0.17
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (150 bp):
TTATTAGAATAATGTTCTCAAGAAAAAAAATAATGTCAATATTTTCATTGAAATAGTTAATAATA
TTTAACTATTTAAACAAACTAATGATAGAGAATCAAATTATATTAAAAATTAAAGTATATAGATT
GAATCTTAAATTTTAGCATA
Found at i:51134437 original size:16 final size:17
Alignment explanation
Indices: 51134416--51134487 Score: 64
Period size: 17 Copynumber: 4.4 Consensus size: 17
51134406 ATATTTTTTT
51134416 AAATATTT-AATATATA
1 AAATATTTAAATATATA
*
51134432 AAATATTTAAATATATC
1 AAATATTTAAATATATA
* *
51134449 AAATGAATTAGAT-TA-A
1 AAAT-ATTTAAATATATA
51134465 ATAAT-TTTAAATATA-A
1 A-AATATTTAAATATATA
51134481 AAATATT
1 AAATATT
51134488 AATTGATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
15 8 0.18
16 15 0.33
17 16 0.36
18 6 0.13
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (17 bp):
AAATATTTAAATATATA
Found at i:51134496 original size:33 final size:33
Alignment explanation
Indices: 51134437--51134501 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
51134427 ATATAAAATA
**
51134437 TTTAAATATATCAAATGAATTAGATTAAATAAT
1 TTTAAATATAAAAAATGAATTAGATTAAATAAT
* *
51134470 TTTAAATATAAAAATATTAATT-GATTATATAA
1 TTTAAATATAAAAA-ATGAATTAGATTAAATAA
51134502 ATTATTCATC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 21 0.78
34 6 0.22
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.42
Consensus pattern (33 bp):
TTTAAATATAAAAAATGAATTAGATTAAATAAT
Found at i:51136791 original size:12 final size:12
Alignment explanation
Indices: 51136771--51136809 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
51136761 GAAAAGGCAA
*
51136771 AAAACAAAAAAT
1 AAAACAAAAAAC
*
51136783 AAAATAAAAAAC
1 AAAACAAAAAAC
*
51136795 AAAACAAAAACC
1 AAAACAAAAAAC
51136807 AAA
1 AAA
51136810 GGCCCAAAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.82, C:0.13, G:0.00, T:0.05
Consensus pattern (12 bp):
AAAACAAAAAAC
Found at i:51137675 original size:21 final size:20
Alignment explanation
Indices: 51137651--51137690 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
51137641 TATGTATTTT
51137651 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
51137672 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
51137691 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:51137698 original size:20 final size:21
Alignment explanation
Indices: 51137656--51137698 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
51137646 ATTTTAATGA
*
51137656 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
51137677 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
51137697 TT
1 TT
51137699 TGTTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:51139560 original size:43 final size:44
Alignment explanation
Indices: 51139511--51139677 Score: 189
Period size: 43 Copynumber: 3.9 Consensus size: 44
51139501 GGATTACGAG
*
51139511 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
**
51139555 -TGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * * ** *
51139597 ATATGATTTCGTCTAAGACCCCGTCTGGGACAGTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
51139640 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
51139678 TGTACGAGAT
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 7 0.07
43 95 0.93
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:51149704 original size:40 final size:40
Alignment explanation
Indices: 51149582--51149725 Score: 129
Period size: 40 Copynumber: 3.6 Consensus size: 40
51149572 TTCTAGCACC
** * *
51149582 AGCCTGCGGGAATTTAAACCCGGTATAATA--CCAGC-TCGT
1 AGCCTGCGGGTCTTTAAGCCCGG-ATAATATTCCAGCGT-AT
* ** *
51149621 AGCCTGCGGGTCTCT-AGCCCGGATAGCATTCTAGCACG-A-
1 AGCCTGCGGGTCTTTAAGCCCGGATAATATTCCAG--CGTAT
51149660 AGCCTGCGGGTCTTTAAGCCCGGATAATATTCCAGCGTAT
1 AGCCTGCGGGTCTTTAAGCCCGGATAATATTCCAGCGTAT
*
51149700 AGCCTGCGGGTCTTTAAGCCTGGATA
1 AGCCTGCGGGTCTTTAAGCCCGGATA
51149726 CAATTCCTCA
Statistics
Matches: 84, Mismatches: 13, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
37 4 0.05
38 8 0.10
39 30 0.36
40 41 0.49
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.24
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATAATATTCCAGCGTAT
Found at i:51151278 original size:18 final size:19
Alignment explanation
Indices: 51151236--51151278 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
51151226 TGAACACCCA
*
51151236 TTATTTTATAATCTTTTTC
1 TTATTTTATAATCTATTTC
51151255 TTATTTTACTAAT-TATTT-
1 TTATTTTA-TAATCTATTTC
51151273 TTATTT
1 TTATTT
51151279 CAAAATAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 6 0.27
19 12 0.55
20 4 0.18
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (19 bp):
TTATTTTATAATCTATTTC
Found at i:51154178 original size:21 final size:20
Alignment explanation
Indices: 51154149--51154188 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
51154139 CACTTATTTT
*
51154149 AATGATTGATTATAGATTATG
1 AATGATTGATGATAG-TTATG
*
51154170 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
51154189 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:51162239 original size:6 final size:6
Alignment explanation
Indices: 51162150--51162238 Score: 135
Period size: 6 Copynumber: 14.7 Consensus size: 6
51162140 CTAAGAATTA
* *
51162150 AAAATC AAAAAC TAAAACTA AAAATC AAAATC AAAATC AAAATC AAAATC
1 AAAATC AAAATC -AAAA-TC AAAATC AAAATC AAAATC AAAATC AAAATC
51162200 AAAATC AAAATC AAAATC AAAATC AAAATC AAAAT- AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
51162239 AGAAAATAAA
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
5 4 0.05
6 65 0.84
7 8 0.10
ACGTcount: A:0.70, C:0.15, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATC
Found at i:51164653 original size:20 final size:20
Alignment explanation
Indices: 51164628--51164674 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
51164618 ATTTTGATAT
*
51164628 ACATGAT-TGAGATGATATGG
1 ACATGATATG-GATGATATGC
*
51164648 ACATGATATGTATGATATGC
1 ACATGATATGGATGATATGC
51164668 ACATGAT
1 ACATGAT
51164675 GTATTCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.09, G:0.23, T:0.32
Consensus pattern (20 bp):
ACATGATATGGATGATATGC
Found at i:51164796 original size:25 final size:26
Alignment explanation
Indices: 51164724--51164820 Score: 137
Period size: 27 Copynumber: 3.8 Consensus size: 26
51164714 GAGGAAGTGC
51164724 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
51164750 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
* **
51164777 AAAAGGG-TTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
51164802 AAAAGGGCTT-TG-CCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
51164821 ATTAAAGAGG
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
24 7 0.11
25 24 0.36
26 9 0.14
27 26 0.39
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:51166877 original size:40 final size:40
Alignment explanation
Indices: 51166686--51166870 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
51166676 TCGAATGATG
* * * * * *
51166686 TCCGGGCTAACTCTCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
51166726 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51166766 TCAGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51166805 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
51166846 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51166871 AACGAGTAGC
Statistics
Matches: 117, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
39 31 0.26
40 77 0.66
41 9 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51166892 original size:79 final size:79
Alignment explanation
Indices: 51166739--51166893 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 79
51166729 GGACTAAGAT
* * **
51166739 CCGAAGGCATTTGTGTGAGATACTAATTCAGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACAGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
51166804 ATCCAGGTTAAGTC
66 ATCCAGGTTAAGTC
* * * *
51166818 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACAGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
51166881 TATATCC-GGTTAA
63 TAAATCCAGGTTAA
51166894 ATTTTGAAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.59
80 24 0.38
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACAGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCAGGTTAAGTC
Found at i:51168856 original size:48 final size:48
Alignment explanation
Indices: 51168803--51168898 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
51168793 AGAATTTTGG
* * *
51168803 TTGGACAACGCTATCCGGGTACTCGATGAGCTATCTTGCACCCCCGAT
1 TTGGACAACACTATCCGGGTACTCGACGAGCTATCTTGCACACCCGAT
51168851 TTGGACAACACTATCCGGGTACTCGACGAGCTATCTTGCACACCCGAT
1 TTGGACAACACTATCCGGGTACTCGACGAGCTATCTTGCACACCCGAT
51168899 GAGTGCCTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (48 bp):
TTGGACAACACTATCCGGGTACTCGACGAGCTATCTTGCACACCCGAT
Found at i:51175179 original size:40 final size:40
Alignment explanation
Indices: 51174990--51175172 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
51174980 GAATGATGTT
* * * * *
51174990 CGGGCTATGTCCCGAAGGC-TTTGTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATC
* * * *
51175030 CGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
51175070 CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
51175109 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
* *
51175149 CGGGCTATGTCTCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
51175173 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 33 0.28
40 77 0.65
41 9 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:51175194 original size:79 final size:79
Alignment explanation
Indices: 51175041--51175205 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
51175031 GGACTAAGAT
* * **
51175041 CCGAAGGCATTTGTGTGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
51175106 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * * *
51175120 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCTCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
51175183 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
51175199 CCGAAGG
1 CCGAAGG
51175206 TACATGATTC
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:51186620 original size:46 final size:46
Alignment explanation
Indices: 51186553--51187459 Score: 1674
Period size: 46 Copynumber: 19.7 Consensus size: 46
51186543 CCTGCCCCTG
* * * * *
51186553 AGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
* * * * *
51186599 AGTGAACTCGGACTCAACTCAACGAGTTCGGACACCTAG-TTACATTTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACA-TTCGCATCCA--TA
*
51186647 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51186692 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51186738 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51186784 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51186830 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51186876 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51186922 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51186968 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51187014 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51187060 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51187106 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51187152 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51187198 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51187244 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51187290 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51187336 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51187382 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
51187428 AGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGA
51187460 TGCTCAACCA
Statistics
Matches: 839, Mismatches: 17, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
45 2 0.00
46 799 0.95
47 36 0.04
48 2 0.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATA
Found at i:51191120 original size:53 final size:53
Alignment explanation
Indices: 51191040--51191143 Score: 181
Period size: 53 Copynumber: 2.0 Consensus size: 53
51191030 AGGGCGTGCA
*
51191040 GGCGTGGTGCGTGTGGGAGCAGTGGTGCGCAGTAGGGCTACTAGCAACACGCG
1 GGCGTGGTGCGTGTGGGAGCAGCGGTGCGCAGTAGGGCTACTAGCAACACGCG
**
51191093 GGCGTGGTGCGTGTGGGAGCAGCGGTGCGCAGTAGGGCTGGTAGCAACACG
1 GGCGTGGTGCGTGTGGGAGCAGCGGTGCGCAGTAGGGCTACTAGCAACACG
51191144 GCGTTCAGCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.16, C:0.20, G:0.47, T:0.16
Consensus pattern (53 bp):
GGCGTGGTGCGTGTGGGAGCAGCGGTGCGCAGTAGGGCTACTAGCAACACGCG
Found at i:51195454 original size:47 final size:46
Alignment explanation
Indices: 51195385--51195477 Score: 141
Period size: 47 Copynumber: 2.0 Consensus size: 46
51195375 CCAGGATAGT
* *
51195385 TGGTACTTCTTTATTTACTTCGAAATCTAAAATTACAAAATCAGCA
1 TGGTACTTCTTTATCTACTTCGAAATCTAAAATTACAAAAGCAGCA
* *
51195431 NTGGTACTTCTTTGTCTGCTTCGAAATCTAAAATTACAAAAGCAGCA
1 -TGGTACTTCTTTATCTACTTCGAAATCTAAAATTACAAAAGCAGCA
51195478 GGAAAGATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.34
Consensus pattern (46 bp):
TGGTACTTCTTTATCTACTTCGAAATCTAAAATTACAAAAGCAGCA
Found at i:51208955 original size:59 final size:59
Alignment explanation
Indices: 51208885--51209004 Score: 213
Period size: 59 Copynumber: 2.0 Consensus size: 59
51208875 AAATATTTAC
*
51208885 GGCTTGATTTATAAAAACGAGGTCTCAATACCTCATTTTCTAAAACCACTTGACTATAG
1 GGCTTGATTTATAAAAACAAGGTCTCAATACCTCATTTTCTAAAACCACTTGACTATAG
* *
51208944 GGCTTGATTTATAAAAACAAGGTCTCGATACCTCATTTTCTAAAACCACTTGACTTTAG
1 GGCTTGATTTATAAAAACAAGGTCTCAATACCTCATTTTCTAAAACCACTTGACTATAG
51209003 GG
1 GG
51209005 TCATAACACT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (59 bp):
GGCTTGATTTATAAAAACAAGGTCTCAATACCTCATTTTCTAAAACCACTTGACTATAG
Found at i:51215567 original size:43 final size:43
Alignment explanation
Indices: 51215417--51215575 Score: 134
Period size: 43 Copynumber: 3.7 Consensus size: 43
51215407 TATGTGTTAT
*
51215417 CATGGAAGACCACGTCTGGGATGTTGGCATC-A-ACTTATGATTTA
1 CATGTAAGACCACGTCTGGGATGTTGGCATCGATA-TT-TGA-TTA
* ** * *
51215461 CATGTAAGACCATGTCTGGGACATCGGTATCG-TATTTGATCT-
1 CATGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGAT-TA
* *
51215503 CGTGTAAGACC-CTGTCCGGGATAG-TGGCATCGATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGAT-GTTGGCATCGATATTTGATTA
51215546 CATAG-AAGACCACGTCTGGGATGTTGGCAT
1 CAT-GTAAGACCACGTCTGGGATGTTGGCAT
51215576 TGTATGAGCT
Statistics
Matches: 90, Mismatches: 15, Indels: 21
0.71 0.12 0.17
Matches are distributed among these distances:
42 26 0.29
43 34 0.38
44 29 0.32
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGATGTTGGCATCGATATTTGATTA
Found at i:51216455 original size:35 final size:35
Alignment explanation
Indices: 51216398--51216464 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
51216388 TTGATGCTTG
*
51216398 TAGGGAAGACCCTAAATGGGTGGCAAATTGGCCTT
1 TAGGGAAGACCCTAAATAGGTGGCAAATTGGCCTT
*
51216433 TAGGGAA-AGCCCTTAATAGGTGGCAAATTGGC
1 TAGGGAAGA-CCCTAAATAGGTGGCAAATTGGC
51216465 GTTGTAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 1 0.03
35 28 0.97
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.22
Consensus pattern (35 bp):
TAGGGAAGACCCTAAATAGGTGGCAAATTGGCCTT
Found at i:51229295 original size:42 final size:43
Alignment explanation
Indices: 51229192--51229343 Score: 145
Period size: 43 Copynumber: 3.5 Consensus size: 43
51229182 ATATGTGTTA
* * *
51229192 TCGTGTAAGAACAC-GTCTGGAAC-GTTGGCATCGACT-TATGATT
1 TCGTGTAAG-ACCCTGTCTGGGACAG-TGGCATCGA-TATTTGATT
* *
51229235 TACGTGTAAGACCATGTCTGGGACA-TCTGCATCG-TATTTGATT
1 T-CGTGTAAGACCCTGTCTGGGACAGT-GGCATCGATATTTGATT
51229278 TCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATT
1 TCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATT
* *
51229321 ACATGTAAGACCAC-GTCTGGGAC
1 TCGTGTAAGACC-CTGTCTGGGAC
51229344 GTTGCCATTG
Statistics
Matches: 92, Mismatches: 9, Indels: 16
0.79 0.08 0.14
Matches are distributed among these distances:
42 29 0.32
43 40 0.43
44 23 0.25
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
TCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATT
Found at i:51230992 original size:39 final size:40
Alignment explanation
Indices: 51230930--51231044 Score: 160
Period size: 39 Copynumber: 2.9 Consensus size: 40
51230920 TCGGATATAG
* *
51230930 TACCAGCACTAAGCCTGCGGGATTTAACTCGAATATACAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGAATATACAT
* * *
51230970 TACCAGCACGAAGCTTAC-GGATTTAACCCGGATATACAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGAATATACAT
* *
51231009 TACCAGCATGAAGCCTGCGGGATTTAACCCGGATAT
1 TACCAGCACGAAGCCTGCGGGATTTAACCCGAATAT
51231045 TTAATATATC
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
39 34 0.52
40 32 0.48
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.23
Consensus pattern (40 bp):
TACCAGCACGAAGCCTGCGGGATTTAACCCGAATATACAT
Found at i:51238988 original size:40 final size:40
Alignment explanation
Indices: 51238928--51239059 Score: 196
Period size: 40 Copynumber: 3.3 Consensus size: 40
51238918 CTGCGAAACG
* *
51238928 TTAAGCCCGGATAT--AGTACCAGCACTAAGCCTGCGGGAT
1 TTAA-CCCGGATATACATTACCAGCACGAAGCCTGCGGGAT
*
51238967 TTAACCCGGATATACATTACCAGCACGAAGCTTGCGGGAT
1 TTAACCCGGATATACATTACCAGCACGAAGCCTGCGGGAT
* *
51239007 TTAACTCGGATATACATTACCAGCACGAAGCCTGCGAGAT
1 TTAACCCGGATATACATTACCAGCACGAAGCCTGCGGGAT
51239047 TTAACCCGGATAT
1 TTAACCCGGATAT
51239060 TTAATATATC
Statistics
Matches: 84, Mismatches: 7, Indels: 3
0.89 0.07 0.03
Matches are distributed among these distances:
38 9 0.11
39 4 0.05
40 71 0.85
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAACCCGGATATACATTACCAGCACGAAGCCTGCGGGAT
Found at i:51242823 original size:40 final size:35
Alignment explanation
Indices: 51242722--51242849 Score: 114
Period size: 35 Copynumber: 3.5 Consensus size: 35
51242712 CATTGAAATG
* * * *
51242722 CCATACCTACATTTTACAACTCGGTATGGGA-AATG
1 CCATACCTACATTTCACAACTCAGTAT-GGACGATA
* ** * *
51242757 CCATACTTACATTTCTTAACTTAGTATGGATTTGGTAATA
1 CCATACCTACATTTCACAACTCAGTATGGA---CG--ATA
51242797 CCATACCTACATTTCACAACTCAGTATGGACGATA
1 CCATACCTACATTTCACAACTCAGTATGGACGATA
51242832 CCATACCTACATTTCACA
1 CCATACCTACATTTCACA
51242850 CTTTGCCATG
Statistics
Matches: 74, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
34 3 0.04
35 42 0.57
37 1 0.01
40 28 0.38
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (35 bp):
CCATACCTACATTTCACAACTCAGTATGGACGATA
Found at i:51250681 original size:20 final size:20
Alignment explanation
Indices: 51250656--51250762 Score: 180
Period size: 20 Copynumber: 5.3 Consensus size: 20
51250646 GTTTTGATAT
51250656 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
51250676 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
51250696 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
51250716 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
51250736 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
51250756 ATATGAT
1 ACATGAT
51250763 GTAATCATAA
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
20 81 0.98
21 2 0.02
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.35
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:51250690 original size:9 final size:9
Alignment explanation
Indices: 51250678--51250754 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
51250668 TGATATGCAC
51250678 ATGATATGT
1 ATGATATGT
*
51250687 ATGATATGCAC
1 ATGATATG--T
51250698 ATGATATGT
1 ATGATATGT
*
51250707 ATGATATGCAC
1 ATGATATG--T
51250718 ATGATATGT
1 ATGATATGT
* *
51250727 ACGATATGCAC
1 ATGATATG--T
51250738 ATGATATGT
1 ATGATATGT
51250747 ATGATATG
1 ATGATATG
51250755 CATATGATGT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:51250871 original size:25 final size:26
Alignment explanation
Indices: 51250811--51250871 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 26
51250801 GGAGGAAGTG
51250811 CAAAAG-GGCTTATGCCCCAGTTTAC
1 CAAAAGAGGCTTATGCCCCAGTTTAC
* *
51250836 CAAAA-AGGGCTTTTGCCCCAG-TTAT
1 CAAAAGA-GGCTTATGCCCCAGTTTAC
*
51250861 TAAAAGAGGCT
1 CAAAAGAGGCT
51250872 AGGCCTCCAG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
25 16 0.53
26 14 0.47
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CAAAAGAGGCTTATGCCCCAGTTTAC
Found at i:51251115 original size:31 final size:31
Alignment explanation
Indices: 51251080--51251181 Score: 96
Period size: 31 Copynumber: 3.1 Consensus size: 31
51251070 CGTTTACAGT
51251080 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
51251111 AAAGGCTTCGACCCAGTGTTACGAAATATGAAATATGA
1 AAAGGCTTCGGCCCA--G-T----AATATGAAATATGA
* ** *
51251149 AAAGGCTTCAGCCCAGTGTTACGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51251180 AA
1 AA
51251182 TATCAAAAGC
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
31 27 0.47
33 1 0.02
34 1 0.02
35 1 0.02
36 1 0.02
38 27 0.47
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:51251148 original size:38 final size:39
Alignment explanation
Indices: 51251097--51251195 Score: 168
Period size: 38 Copynumber: 2.6 Consensus size: 39
51251087 TCGGCCCAGT
51251097 AATATGAAATATGAAAAGGCTTCGA-CCCAGTGTTACGA
1 AATATGAAATATGAAAAGGCTTCGAGCCCAGTGTTACGA
51251135 AATATGAAATATGAAAAGGCTTC-AGCCCAGTGTTACGA
1 AATATGAAATATGAAAAGGCTTCGAGCCCAGTGTTACGA
*
51251173 AATATGAAATATCAAAA-GCTTCG
1 AATATGAAATATGAAAAGGCTTCG
51251196 GCCTAGTATA
Statistics
Matches: 58, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
37 6 0.10
38 52 0.90
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.24
Consensus pattern (39 bp):
AATATGAAATATGAAAAGGCTTCGAGCCCAGTGTTACGA
Found at i:51256183 original size:14 final size:14
Alignment explanation
Indices: 51256164--51256190 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51256154 CCGAAACTAG
51256164 AAAGAAAAAAAAAC
1 AAAGAAAAAAAAAC
51256178 AAAGAAAAAAAAA
1 AAAGAAAAAAAAA
51256191 TGCTCATCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.04, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAAAAAC
Found at i:51258228 original size:40 final size:40
Alignment explanation
Indices: 51257270--51258214 Score: 1718
Period size: 40 Copynumber: 23.6 Consensus size: 40
51257260 TTGAATGATG
* * * * *
51257270 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
51257310 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51257350 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257389 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257429 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257469 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257509 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257549 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257589 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257629 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257669 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257709 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257749 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257789 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257829 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257869 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257909 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257949 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51257989 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51258029 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51258069 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
51258109 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
51258149 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
51258190 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
51258215 AACGAGGAGC
Statistics
Matches: 886, Mismatches: 14, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
39 35 0.04
40 841 0.95
41 10 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51261548 original size:11 final size:11
Alignment explanation
Indices: 51261532--51261587 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
51261522 ATACATGGGT
51261532 ATGATATGCAC
1 ATGATATGCAC
*
51261543 ATGATATG--T
1 ATGATATGCAC
51261552 ATGATATGCAC
1 ATGATATGCAC
*
51261563 ATGATATG--T
1 ATGATATGCAC
51261572 ATGATATGCAC
1 ATGATATGCAC
51261583 ATGAT
1 ATGAT
51261588 GTAATCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:51261555 original size:20 final size:20
Alignment explanation
Indices: 51261530--51261587 Score: 116
Period size: 20 Copynumber: 2.9 Consensus size: 20
51261520 TGATACATGG
51261530 GTATGATATGCACATGATAT
1 GTATGATATGCACATGATAT
51261550 GTATGATATGCACATGATAT
1 GTATGATATGCACATGATAT
51261570 GTATGATATGCACATGAT
1 GTATGATATGCACATGAT
51261588 GTAATCATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
GTATGATATGCACATGATAT
Found at i:51261709 original size:26 final size:26
Alignment explanation
Indices: 51261637--51261698 Score: 124
Period size: 26 Copynumber: 2.4 Consensus size: 26
51261627 GAGGAAGTGC
51261637 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
51261663 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
51261689 AAAAGGGCTT
1 AAAAGGGCTT
51261699 TTTCCCTAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:51266419 original size:26 final size:24
Alignment explanation
Indices: 51266390--51266479 Score: 103
Period size: 23 Copynumber: 3.8 Consensus size: 24
51266380 GGACTCATCA
* *
51266390 CAGCTCATATGAGCTTACTGATATAT
1 CAGCTCGTAAGAGCTTACTGAT-T-T
*
51266416 CAGCTCGTACGAGCTTACT-ATTT
1 CAGCTCGTAAGAGCTTACTGATTT
*
51266439 CAGCTCGTAAGAGCTTGCTGA-TT
1 CAGCTCGTAAGAGCTTACTGATTT
*
51266462 CAGCTCGTTAGAGCTTAC
1 CAGCTCGTAAGAGCTTAC
51266480 CGTTTCAACT
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
23 36 0.63
24 2 0.04
25 2 0.04
26 17 0.30
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.32
Consensus pattern (24 bp):
CAGCTCGTAAGAGCTTACTGATTT
Found at i:51266445 original size:23 final size:23
Alignment explanation
Indices: 51266390--51266497 Score: 96
Period size: 23 Copynumber: 4.5 Consensus size: 23
51266380 GGACTCATCA
*
51266390 CAGCTCATATGAGCTTACTGATATAT
1 CAGCTCGTA-GAGCTTACTGAT-T-T
51266416 CAGCTCGTACGAGCTTACT-ATTT
1 CAGCTCGTA-GAGCTTACTGATTT
*
51266439 CAGCTCGTAAGAGCTTGCTGA-TT
1 CAGCTCGT-AGAGCTTACTGATTT
*
51266462 CAGCTCGTTAGAGCTTACCG-TTT
1 CAGCTCG-TAGAGCTTACTGATTT
*
51266485 CAACTCAGTAGAG
1 CAGCTC-GTAGAG
51266498 TTTGTTGTCC
Statistics
Matches: 71, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
23 47 0.66
24 5 0.07
25 2 0.03
26 17 0.24
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.31
Consensus pattern (23 bp):
CAGCTCGTAGAGCTTACTGATTT
Found at i:51271624 original size:37 final size:37
Alignment explanation
Indices: 51271574--51271652 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
51271564 TTATTACGAA
* * * *
51271574 GTCTTATCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
51271611 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
51271648 GTCTT
1 GTCTT
51271653 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:51271921 original size:47 final size:47
Alignment explanation
Indices: 51271771--51272055 Score: 428
Period size: 47 Copynumber: 6.1 Consensus size: 47
51271761 CCCTTCGGGA
* * * * * * *
51271771 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51271818 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51271864 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
51271911 CTTATTACATATATACACTTTCACATTCATCACATCGACCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51271958 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
51272005 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51272052 CTTA
1 CTTA
51272056 CTATCATTTC
Statistics
Matches: 217, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 40 0.18
47 177 0.82
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51275536 original size:40 final size:38
Alignment explanation
Indices: 51275483--51275621 Score: 125
Period size: 40 Copynumber: 3.5 Consensus size: 38
51275473 CATGATTGCT
* * *
51275483 CTTCGGGATTTAGCACGGATATATCACTAGCACGAATGC
1 CTTCGGAACTTAGCCCGGATATATCACTAGCAC-AATGC
* * *
51275522 TCTTCGGAACTTAGCCCGGATTTAGTAACTCGCACCAATGC
1 -CTTCGGAACTTAGCCCGGATATA-TCACTAGCA-CAATGC
* * * *
51275563 CTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGAACTTAGCCCGGATAT-ATCAC-TAGCACAATGC
*
51275603 CTTCGGGACTTAGCCCGGA
1 CTTCGGAACTTAGCCCGGA
51275622 CATCATTCGA
Statistics
Matches: 79, Mismatches: 16, Indels: 8
0.77 0.16 0.08
Matches are distributed among these distances:
40 62 0.78
41 16 0.20
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (38 bp):
CTTCGGAACTTAGCCCGGATATATCACTAGCACAATGC
Found at i:51275970 original size:29 final size:29
Alignment explanation
Indices: 51275931--51276009 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
51275921 CTTAATAATC
*
51275931 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
51275961 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
51275990 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
51276010 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:51277509 original size:50 final size:50
Alignment explanation
Indices: 51277434--51277534 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
51277424 ACAGTGGATA
*
51277434 GTGATAGTGTGACTAGTTGCTGACGATCCTCGAGCCTGTAGCTTCGCAAT
1 GTGATAGTGTGACTAGTTGCTGACGATCCCCGAGCCTGTAGCTTCGCAAT
51277484 GTGATAGTGTGACTAGTTGCTGACGATCCCCGAGCCTGTAGCTTCGCAAT
1 GTGATAGTGTGACTAGTTGCTGACGATCCCCGAGCCTGTAGCTTCGCAAT
51277534 G
1 G
51277535 AGATCTATAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (50 bp):
GTGATAGTGTGACTAGTTGCTGACGATCCCCGAGCCTGTAGCTTCGCAAT
Found at i:51278003 original size:37 final size:37
Alignment explanation
Indices: 51277953--51278031 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
51277943 TTATTACGAA
* * *
51277953 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
51277990 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
51278027 GTCTT
1 GTCTT
51278032 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Done.