Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 153 of 284
Found at i:51278228 original size:47 final size:47
Alignment explanation
Indices: 51278150--51278448 Score: 463
Period size: 47 Copynumber: 6.4 Consensus size: 47
51278140 CCCTTTGGGA
* * * * * **
51278150 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
* * **
51278197 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
* * **
51278244 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
51278291 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
51278338 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
51278385 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
51278432 CTTATCACATATATACA
1 CTTATCACATATATACA
51278449 ACCATTTGGT
Statistics
Matches: 235, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 235 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.30
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
Found at i:51278473 original size:74 final size:74
Alignment explanation
Indices: 51278385--51278522 Score: 222
Period size: 74 Copynumber: 1.9 Consensus size: 74
51278375 GCCACGAGGC
* *
51278385 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACATATATACAA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACACATATACAA
51278450 CCATTTGGT
66 CCATTTGGT
* ** *
51278459 CTTATCACACATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTCTCACACATATACA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACACATATACA
51278523 CTTTCACATT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 58 1.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.30
Consensus pattern (74 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACACATATACAA
CCATTTGGT
Found at i:51278476 original size:168 final size:168
Alignment explanation
Indices: 51278291--51278616 Score: 580
Period size: 168 Copynumber: 1.9 Consensus size: 168
51278281 GCTATTAGGC
* *
51278291 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACACATATACAC
51278356 TTTCACATTCATCACATCGGCCACGAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCACGAGGCCTTATCACATATATACACTTTCACATTCATCACATC
51278421 GGCCACGAGGCCTTATCACATATATACAACCATTTGGT
131 GGCCACGAGGCCTTATCACATATATACAACCATTTGGT
* ** *
51278459 CTTATCACACATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTCTCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACACATATACAC
**
51278524 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCACGAGGCCTTATCACATATATACACTTTCACATTCATCACATC
51278589 GGCCACGAGGCCTTATCACATATATACA
131 GGCCACGAGGCCTTATCACATATATACA
51278617 CTTTCACATT
Statistics
Matches: 150, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
168 150 1.00
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.29
Consensus pattern (168 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCCACGAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCACGAGGCCTTATCACATATATACAACCATTTGGT
Found at i:51278481 original size:121 final size:121
Alignment explanation
Indices: 51278338--51278569 Score: 392
Period size: 121 Copynumber: 1.9 Consensus size: 121
51278328 GCCACGAGGC
* *
51278338 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACACATATACAC
51278403 TTTCACATTCATCACATCGGCCACGAGGCCTTATCACATATATACAACCATTTGGT
66 TTTCACATTCATCACATCGGCCACGAGGCCTTATCACATATATACAACCATTTGGT
* ** *
51278459 CTTATCACACATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTCTCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACACATATACAC
**
51278524 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
66 TTTCACATTCATCACATCGGCCACGAGGCCTTATCACATATATACA
51278570 CTTTCACATT
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
121 103 1.00
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (121 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCCACGAGGCCTTATCACATATATACAACCATTTGGT
Found at i:51278514 original size:47 final size:47
Alignment explanation
Indices: 51278459--51278685 Score: 382
Period size: 47 Copynumber: 4.8 Consensus size: 47
51278449 ACCATTTGGT
* * **
51278459 CTTATCACACATATACACTTTCACCTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
* * **
51278506 CTTCTCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
51278553 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
51278600 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
51278647 CTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC
51278686 TATATATACA
Statistics
Matches: 174, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 174 1.00
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.30
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGC
Found at i:51278625 original size:215 final size:214
Alignment explanation
Indices: 51278235--51278776 Score: 868
Period size: 215 Copynumber: 2.5 Consensus size: 214
51278225 ATCACATCGG
* * *
51278235 CCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACA
1 CCATTTGGTCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACA
* **
51278300 TATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACATATATACACTTTCACATT
66 CATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
51278365 CATCACATCGGCCACGAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAG
131 CATCACATCGGCCACGAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAG
51278430 GCCTTATCACATATATACAA
196 GCCTTATCACATATATAC-A
* * * *
51278450 CCATTTGGTCTTATCACACATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTCTCACA
1 CCATTTGGTCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACA
51278515 CATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
66 CATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
51278580 CATCACATCGGCCACGAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAG
131 CATCACATCGGCCACGAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAG
51278645 GCCTTATCACATATATACA
196 GCCTTATCACATATATACA
* ** ** *
51278664 CTTTCACATTCATCACATCGGCTATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
1 C---CA-TTTGGTCTTATC-AC-ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
*
51278729 ATCACACATATACACTTTCACATTCATTACATCGGCCATTAGGCCTTA
60 ATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
51278777 CTATCATTTC
Statistics
Matches: 300, Mismatches: 21, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
214 2 0.01
215 203 0.68
217 2 0.01
218 7 0.02
219 1 0.00
220 85 0.28
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (214 bp):
CCATTTGGTCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACA
CATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
CATCACATCGGCCACGAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAG
GCCTTATCACATATATACA
Found at i:51278672 original size:262 final size:266
Alignment explanation
Indices: 51278201--51278776 Score: 948
Period size: 262 Copynumber: 2.2 Consensus size: 266
51278191 CTCGGCCCTG
* * *
51278201 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
*
51278266 ACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
51278331 ACGAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACATA
131 ACGAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACATA
* *
51278396 TATACACTTTCACATTCATCACATCGGCCA-CGAGGC-CTTATCACATAT-AT-ACAAC-C-ATT
196 TATACACTTTCACATTCATCACATCGGCCATAGAGACACTT-TCACAT-TCATCACAACGCTATT
* *
51278455 TGGTCTTA
259 AGGCCTTA
* *
51278463 TCACACATATACACTTTCACCTTCATCACATCGGCCATTAGGCCTTCTCACACATATACACTTTC
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
51278528 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
66 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
51278593 ACGAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACATA
131 ACGAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACATA
* * * *
51278658 TATACACTTTCACATTCATCACATCGGCTATATATACACTTTCACATTCATCACATCGGCTATTA
196 TATACACTTTCACATTCATCACATCGGCCATAGAGACACTTTCACATTCATCACAAC-GCTATTA
51278723 GGCCTTA
260 GGCCTTA
*
51278730 TCACACATATACACTTTCACATTCATTACATCGGCCATTAGGCCTTA
1 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
51278777 CTATCATTTC
Statistics
Matches: 290, Mismatches: 17, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
262 219 0.76
263 10 0.03
264 7 0.02
266 1 0.00
267 53 0.18
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (266 bp):
TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
ACGAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACATA
TATACACTTTCACATTCATCACATCGGCCATAGAGACACTTTCACATTCATCACAACGCTATTAG
GCCTTA
Found at i:51278695 original size:32 final size:32
Alignment explanation
Indices: 51278655--51278720 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
51278645 GCCTTATCAC
51278655 ATATATACACTTTCACATTCATCACATCGGCT
1 ATATATACACTTTCACATTCATCACATCGGCT
51278687 ATATATACACTTTCACATTCATCACATCGGCT
1 ATATATACACTTTCACATTCATCACATCGGCT
51278719 AT
1 AT
51278721 TAGGCCTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (32 bp):
ATATATACACTTTCACATTCATCACATCGGCT
Found at i:51278698 original size:79 final size:79
Alignment explanation
Indices: 51278608--51278764 Score: 269
Period size: 79 Copynumber: 2.0 Consensus size: 79
51278598 GCCTTATCAC
*
51278608 ATATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACACATATACACTTTCACAT
51278673 TCATCACATCGGCT
66 TCATCACATCGGCT
* **
51278687 ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACACATATACACTTTCACAT
*
51278752 TCATTACATCGGC
66 TCATCACATCGGC
51278765 CATTAGGCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (79 bp):
ATATATACACTTTCACATTCATCACATCGGCCACGAGGCCTTATCACACATATACACTTTCACAT
TCATCACATCGGCT
Found at i:51279491 original size:274 final size:274
Alignment explanation
Indices: 51279002--51279522 Score: 943
Period size: 274 Copynumber: 1.9 Consensus size: 274
51278992 TGAATATAGA
*
51279002 CTCGTATATCTTCCATCCATAAAATTTCCAGAATTTTAGGTTTGGCCAATAAATACCAGATTTTT
1 CTCGTATATATTCCATCCATAAAATTTCCAGAATTTTAGGTTTGGCCAATAAATACCAGATTTTT
** * *
51279067 CTTAAAGTTTCCCCTGTTTCACTGTTTGACTAATCTGACCACTCTTCACTACGAATCAAATTTCT
66 CTTAAAACTTCCCCTGTTTCACTATTTGACTAATCTGACCACTCTTCACTAAGAATCAAATTTCT
51279132 CATTGTACAGAATTCAAAATATGTTCTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCT
131 CATTGTACAGAATTCAAAATATGTTCTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCT
51279197 AAGCATAAAATTTTATCTTATAACCATTTTTGTACAATATATAATGATTTTCTAAAAACCGAATA
196 AAGCATAAAATTTTATCTTATAACCATTTTTGTACAATATATAATGATTTTCTAAAAACCGAATA
51279262 GGTGATTTCGGAGT
261 GGTGATTTCGGAGT
* * *
51279276 CTCGTATATATTCTATCCATAAATTTTCCAGAATTTTAGGTTTGGCCAATCAATACCAGATTTTT
1 CTCGTATATATTCCATCCATAAAATTTCCAGAATTTTAGGTTTGGCCAATAAATACCAGATTTTT
51279341 CTTAAAACTTCCCCTGTTTCACTATTTGACTAATCTGACCACTCTTCACTAAGAATCAAATTTCT
66 CTTAAAACTTCCCCTGTTTCACTATTTGACTAATCTGACCACTCTTCACTAAGAATCAAATTTCT
* * *
51279406 CATTTTACAGAATTCAAAATGTGTTGTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCT
131 CATTGTACAGAATTCAAAATATGTTCTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCT
51279471 AAGCATAAAATTTTATCTTATAACCATTTTTGTACAATATATAATGATTTTC
196 AAGCATAAAATTTTATCTTATAACCATTTTTGTACAATATATAATGATTTTC
51279523 ATTTTATCTT
Statistics
Matches: 236, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
274 236 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (274 bp):
CTCGTATATATTCCATCCATAAAATTTCCAGAATTTTAGGTTTGGCCAATAAATACCAGATTTTT
CTTAAAACTTCCCCTGTTTCACTATTTGACTAATCTGACCACTCTTCACTAAGAATCAAATTTCT
CATTGTACAGAATTCAAAATATGTTCTATTTGATTTCATTTGAAACTAGACTCATTAAGGAGTCT
AAGCATAAAATTTTATCTTATAACCATTTTTGTACAATATATAATGATTTTCTAAAAACCGAATA
GGTGATTTCGGAGT
Found at i:51279541 original size:43 final size:43
Alignment explanation
Indices: 51279480--51279565 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
51279470 TAAGCATAAA
51279480 ATTTTATCTTATAACCATTTTTGTACAATATATAATGATTTTC
1 ATTTTATCTTATAACCATTTTTGTACAATATATAATGATTTTC
*
51279523 ATTTTATCTTATAACCATTTTTGTACAATTTATAATGATTTTC
1 ATTTTATCTTATAACCATTTTTGTACAATATATAATGATTTTC
51279566 TAAAAACCGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.31, C:0.12, G:0.05, T:0.52
Consensus pattern (43 bp):
ATTTTATCTTATAACCATTTTTGTACAATATATAATGATTTTC
Found at i:51279557 original size:21 final size:21
Alignment explanation
Indices: 51279488--51279557 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
51279478 AAATTTTATC
51279488 TTATAACCATTTTTGTACAAT
1 TTATAACCATTTTTGTACAAT
* ** ** ***
51279509 ATATAATGATTTTCATTTTAT
1 TTATAACCATTTTTGTACAAT
51279530 CTTATAACCATTTTTGTACAAT
1 -TTATAACCATTTTTGTACAAT
51279552 TTATAA
1 TTATAA
51279558 TGATTTTCTA
Statistics
Matches: 32, Mismatches: 16, Indels: 2
0.64 0.32 0.04
Matches are distributed among these distances:
21 19 0.59
22 13 0.41
ACGTcount: A:0.34, C:0.11, G:0.04, T:0.50
Consensus pattern (21 bp):
TTATAACCATTTTTGTACAAT
Found at i:51279563 original size:21 final size:21
Alignment explanation
Indices: 51279496--51279564 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
51279486 TCTTATAACC
*
51279496 ATTTTTGTACAATATATAATG
1 ATTTTTGTACAATTTATAATG
** *** **
51279517 ATTTTCATTTTATCTTATAACC
1 ATTTTTGTACAAT-TTATAATG
51279539 ATTTTTGTACAATTTATAATG
1 ATTTTTGTACAATTTATAATG
51279560 ATTTT
1 ATTTT
51279565 CTAAAAACCG
Statistics
Matches: 32, Mismatches: 15, Indels: 2
0.65 0.31 0.04
Matches are distributed among these distances:
21 19 0.59
22 13 0.41
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.54
Consensus pattern (21 bp):
ATTTTTGTACAATTTATAATG
Found at i:51281418 original size:37 final size:38
Alignment explanation
Indices: 51281359--51281438 Score: 119
Period size: 37 Copynumber: 2.1 Consensus size: 38
51281349 ACTTCCCGAC
*
51281359 TAGGGTAAATTTTGGGGGGTCACAACTCT-CCCCCCTT
1 TAGGGTAAATTTAGGGGGGTCACAACTCTCCCCCCCTT
*
51281396 TAGGGTCAAA-TTAGGGGTGTCACAACTCTCCCCCCCTT
1 TAGGGT-AAATTTAGGGGGGTCACAACTCTCCCCCCCTT
51281434 TAGGG
1 TAGGG
51281439 ATTTTCATCC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
37 23 0.59
38 16 0.41
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.28
Consensus pattern (38 bp):
TAGGGTAAATTTAGGGGGGTCACAACTCTCCCCCCCTT
Found at i:51282694 original size:40 final size:37
Alignment explanation
Indices: 51282556--51282694 Score: 116
Period size: 40 Copynumber: 3.5 Consensus size: 37
51282546 CATGATTGCT
* * *
51282556 CTTCGGGATTTAGCACGGATATATCACTAGCACGAATGC
1 CTTC-GGACTTAGCCCGGATATGTCACTAGCAC-AATGC
* * *
51282595 TCTTCGGAACTTAGCCCGGATTTAGTAACTCGCACCAATGC
1 -CTTCGG-ACTTAGCCCGGATAT-GTCACTAGCA-CAATGC
* *
51282636 CTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGA-CTTAGCCCGGATAT-GTCAC-TAGCACAATGC
51282676 CTTCGAGACTTAGCCCGGA
1 CTTCG-GACTTAGCCCGGA
51282695 CATCATTCGA
Statistics
Matches: 80, Mismatches: 13, Indels: 12
0.76 0.12 0.11
Matches are distributed among these distances:
39 3 0.04
40 58 0.73
41 18 0.22
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (37 bp):
CTTCGGACTTAGCCCGGATATGTCACTAGCACAATGC
Found at i:51282816 original size:28 final size:27
Alignment explanation
Indices: 51282776--51282877 Score: 114
Period size: 28 Copynumber: 3.6 Consensus size: 27
51282766 CTCAAACAAT
*
51282776 CTCGTACACATAGTGCTCGATTGAAGAA
1 CTCGCACACATAGTGCTCGATT-AAGAA
* * * *
51282804 CTCGCACACATAGTGCCTCAACTACTGAT
1 CTCGCACACATAGTG-CTCGATTA-AGAA
*
51282833 CTGGCACACATAGTGCTCGATTAAAGAA
1 CTCGCACACATAGTGCTCGATT-AAGAA
51282861 CTCGCACACATAGTGCT
1 CTCGCACACATAGTGCT
51282878 TAAATTACAG
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 38 0.63
29 22 0.37
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (27 bp):
CTCGCACACATAGTGCTCGATTAAGAA
Found at i:51283126 original size:29 final size:29
Alignment explanation
Indices: 51283092--51283164 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
51283082 AATCAACCAG
* *
51283092 GCACACTTAGTGCCATGTACTTT-AAACTC
1 GCACACTTAGTGCCATGCA-TTTCAAACCC
*
51283121 GCACACTTAGTGCCATGCATTTCAAGCCC
1 GCACACTTAGTGCCATGCATTTCAAACCC
51283150 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
51283165 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATGCATTTCAAACCC
Found at i:51283281 original size:40 final size:40
Alignment explanation
Indices: 51283226--51283314 Score: 160
Period size: 40 Copynumber: 2.2 Consensus size: 40
51283216 ACCGTGAACA
51283226 CCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGC
1 CCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGC
*
51283266 CCGGATATAACACCAGCATGAATGCTCTTCGGGACTTAGC
1 CCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGC
*
51283306 CCAGATATA
1 CCGGATATA
51283315 TAACTCTCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (40 bp):
CCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGC
Found at i:51286427 original size:80 final size:79
Alignment explanation
Indices: 51286343--51286514 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
51286333 GGACTAAGAT
*
51286343 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
51286407 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
51286423 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
51286488 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
51286502 CCGAAGGCATTTG
1 CCGAAGGCATTTG
51286515 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:51286494 original size:39 final size:39
Alignment explanation
Indices: 51286290--51286512 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
51286280 TTGAATGCTG
* * * * *
51286290 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
51286330 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
51286369 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
51286410 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
51286450 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
51286489 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51286513 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:51286532 original size:79 final size:80
Alignment explanation
Indices: 51286370--51286547 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
51286360 AGATACAAAT
* * * *
51286370 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
51286435 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
51286450 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
51286514 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
51286529 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
51286548 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:51294355 original size:81 final size:81
Alignment explanation
Indices: 51294257--51294427 Score: 315
Period size: 81 Copynumber: 2.1 Consensus size: 81
51294247 ATTTCATCTT
* *
51294257 ATTCTCAACAATCATTGTAGTCATATCTTATCTCATTCAATATCTATAATGTTCAATAGAACTCA
1 ATTCTCATCAATCATTGTAGTCATATCCTATCTCATTCAATATCTATAATGTTCAATAGAACTCA
51294322 AAATCATAATTCCCTC
66 AAATCATAATTCCCTC
*
51294338 ATTCTCATCAATCATTGTAGTCATATCCTATCTCATTCAATATCTATAATGTTTAATAGAACTCA
1 ATTCTCATCAATCATTGTAGTCATATCCTATCTCATTCAATATCTATAATGTTCAATAGAACTCA
51294403 AAATCATAATTCCCTC
66 AAATCATAATTCCCTC
51294419 ATTCTCATC
1 ATTCTCATC
51294428 TTACCAAGGC
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 87 1.00
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.38
Consensus pattern (81 bp):
ATTCTCATCAATCATTGTAGTCATATCCTATCTCATTCAATATCTATAATGTTCAATAGAACTCA
AAATCATAATTCCCTC
Found at i:51294460 original size:81 final size:80
Alignment explanation
Indices: 51294277--51294445 Score: 212
Period size: 81 Copynumber: 2.0 Consensus size: 80
51294267 ATCATTGTAG
* *
51294277 TCATATCTTATCTCATTCAATATCTATAATGTTCAATAGAACTCAAAATCATAATTCCCTCATTC
1 TCATATCCTATATCA-TCAATATCTATAATGTTCAATAGAACTCAAAATCATAATTCCCTCATTC
* ** *
51294342 TCATCAATCATTGTAG
65 TCATCAACCAAGGTAA
* *
51294358 TCATATCCTATCTCATTCAATATCTATAATGTTTAATAGAACTCAAAATCATAATTCCCTCATTC
1 TCATATCCTATATCA-TCAATATCTATAATGTTCAATAGAACTCAAAATCATAATTCCCTCATTC
*
51294423 TCATCTTACCAAGGCTTAA
65 TCATC-AACCAAGG--TAA
51294442 TCAT
1 TCAT
51294446 TTCGTAATCT
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
81 68 0.87
82 4 0.05
84 6 0.08
ACGTcount: A:0.34, C:0.23, G:0.05, T:0.38
Consensus pattern (80 bp):
TCATATCCTATATCATCAATATCTATAATGTTCAATAGAACTCAAAATCATAATTCCCTCATTCT
CATCAACCAAGGTAA
Found at i:51294815 original size:50 final size:50
Alignment explanation
Indices: 51294598--51294831 Score: 171
Period size: 50 Copynumber: 4.8 Consensus size: 50
51294588 CATAGTAGGG
* * ** *
51294598 TGCCAATGCCATATCCCGGATATGGTCTTACATGGTA-C-CATTTATTGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCACATATCGA
* * *
51294646 TGCCAATGCCATGTGCCAGACATGGTCTTACATGGGATCTCACATATCGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCACATATCGA
* * * * * * * * **
51294696 AG-C--TG--ATAGCCCAGCTATGGTTTTACACGATGTTCT-A-GTATTAA
1 TGCCAATGCCATATCCCAGATATGGTCTTACATG-GGATCTCACATATCGA
* *
51294740 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCACATATCGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCACATATCGA
* * * * *
51294790 TGCCGATGCCATATCCTAGATATGGTATTATACGGGATCTCA
1 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCA
51294832 TCAACCCAAC
Statistics
Matches: 136, Mismatches: 40, Indels: 18
0.70 0.21 0.09
Matches are distributed among these distances:
44 5 0.04
45 19 0.14
46 4 0.03
47 4 0.03
48 36 0.26
49 21 0.15
50 47 0.35
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (50 bp):
TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCTCACATATCGA
Found at i:51295414 original size:25 final size:25
Alignment explanation
Indices: 51295386--51295436 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
51295376 AGAAAAGATG
*
51295386 TTTATATTGCATCAAACTTTCATAT
1 TTTACATTGCATCAAACTTTCATAT
*
51295411 TTTACCTTGCATCAAACTTTCATAT
1 TTTACATTGCATCAAACTTTCATAT
51295436 T
1 T
51295437 CCTCCATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.04, T:0.47
Consensus pattern (25 bp):
TTTACATTGCATCAAACTTTCATAT
Found at i:51300664 original size:22 final size:22
Alignment explanation
Indices: 51300636--51300680 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
51300626 TCAGGAGTCG
51300636 TTACACTATCATAATTCATTTA
1 TTACACTATCATAATTCATTTA
51300658 TTACACTATCATAATTCATTTA
1 TTACACTATCATAATTCATTTA
51300680 T
1 T
51300681 GATATGTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.47
Consensus pattern (22 bp):
TTACACTATCATAATTCATTTA
Found at i:51306649 original size:21 final size:20
Alignment explanation
Indices: 51306623--51306663 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
51306613 ATGCAATCGT
51306623 TGAGTTCCGAACTCAACTCAA
1 TGAGTT-CGAACTCAACTCAA
* *
51306644 TGAGTTCGGATTCAACTCAA
1 TGAGTTCGAACTCAACTCAA
51306664 ATAATTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (20 bp):
TGAGTTCGAACTCAACTCAA
Found at i:51306940 original size:47 final size:46
Alignment explanation
Indices: 51306832--51307002 Score: 149
Period size: 46 Copynumber: 3.7 Consensus size: 46
51306822 TCTCGTAGCC
* * *
51306832 GATGCATGTCCCAAACATGTCTTACACTGGCT-TACAT-CTCGA-GG-T
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATAAT--ATGGCT
* *
51306877 CGATGCATGTCCCAGACATGTCTTACATTAGATCTCGTC-TCA-AT-GCT
1 -GATGCATGTCCCAGACATGTCTTACACTAG--CTC-TCATAATATGGCT
* *
51306924 GGTGCCATGTCCCAGACATGGTCTTTCACTAGCTCTCATAATATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATATGGCT
51306972 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
51307003 ACACAAATAA
Statistics
Matches: 103, Mismatches: 10, Indels: 24
0.75 0.07 0.18
Matches are distributed among these distances:
45 2 0.02
46 49 0.48
47 31 0.30
48 19 0.18
49 1 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGGCT
Found at i:51310444 original size:28 final size:28
Alignment explanation
Indices: 51310376--51310585 Score: 350
Period size: 28 Copynumber: 7.5 Consensus size: 28
51310366 CATGAGATTG
* * * *
51310376 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
51310405 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51310433 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51310461 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51310489 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51310517 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
51310545 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51310572 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
51310586 GACTTAATAT
Statistics
Matches: 174, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
27 24 0.14
28 132 0.76
29 18 0.10
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:51317852 original size:46 final size:45
Alignment explanation
Indices: 51317791--51317957 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 45
51317781 CTCGTAACCG
*
51317791 ATGCATGTCCTAGACATGTCTTACACTGGCT-TACATCTTGAGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATC-TGAGGCCA
* * *
51317837 ATGCATGTCCCAGACATGTCTTACATTGGCTCTCGTCTCAGTGCCGA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTGAG-GCC-A
* * * *
51317884 A-GCCATGTCCCAGACATGGTCTTTCACTGGCTCTCATAATGTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTGAGGCCA
51317931 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
51317958 AGCACACAAA
Statistics
Matches: 102, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
45 3 0.03
46 45 0.44
47 32 0.31
48 20 0.20
49 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTGAGGCCA
Found at i:51323585 original size:18 final size:17
Alignment explanation
Indices: 51323562--51323595 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
51323552 ATTGTAAGTC
51323562 CGTTTTTAATGATTTTTA
1 CGTTTTT-ATGATTTTTA
*
51323580 CGTTTTTGTGATTTTT
1 CGTTTTTATGATTTTT
51323596 GTAACTTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.06, G:0.15, T:0.65
Consensus pattern (17 bp):
CGTTTTTATGATTTTTA
Found at i:51324509 original size:14 final size:14
Alignment explanation
Indices: 51324490--51324517 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
51324480 AGTGTAAATT
51324490 CATTATTATTCCGA
1 CATTATTATTCCGA
51324504 CATTATTATTCCGA
1 CATTATTATTCCGA
51324518 GTGGTTCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (14 bp):
CATTATTATTCCGA
Found at i:51334859 original size:40 final size:40
Alignment explanation
Indices: 51334761--51335023 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
51334751 TCCTCGTTCA
* * * ** *
51334761 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
51334800 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
51334840 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
51334880 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
51334920 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
51334960 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
51335000 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
51335024 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:51341655 original size:40 final size:40
Alignment explanation
Indices: 51341606--51341793 Score: 322
Period size: 40 Copynumber: 4.7 Consensus size: 40
51341596 GCAAACACAT
* * *
51341606 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
51341646 TTGACTTCGGGTCTTAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
51341686 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
51341726 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
51341766 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
51341794 TCCAATGCTC
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:51348203 original size:16 final size:16
Alignment explanation
Indices: 51348182--51348213 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
51348172 TTTCTATTAT
51348182 ACAAACTTACTAAGCA
1 ACAAACTTACTAAGCA
51348198 ACAAACTTACTAAGCA
1 ACAAACTTACTAAGCA
51348214 TGTAATGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (16 bp):
ACAAACTTACTAAGCA
Found at i:51352930 original size:16 final size:16
Alignment explanation
Indices: 51352909--51352940 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
51352899 TTTCTATTAT
51352909 ACAAACTTACTAAGCA
1 ACAAACTTACTAAGCA
51352925 ACAAACTTACTAAGCA
1 ACAAACTTACTAAGCA
51352941 TGTAATGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (16 bp):
ACAAACTTACTAAGCA
Found at i:51355506 original size:17 final size:17
Alignment explanation
Indices: 51355484--51355519 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
51355474 GAATTTGATG
51355484 TGATTTTGGGAATGGAT
1 TGATTTTGGGAATGGAT
51355501 TGATTTTGGGAATGGAT
1 TGATTTTGGGAATGGAT
51355518 TG
1 TG
51355520 GTTAACCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.36, T:0.42
Consensus pattern (17 bp):
TGATTTTGGGAATGGAT
Found at i:51359798 original size:85 final size:85
Alignment explanation
Indices: 51359653--51359825 Score: 319
Period size: 85 Copynumber: 2.0 Consensus size: 85
51359643 TTTATCATTT
*
51359653 TGACATATCAAATCAAATGGTGTGGTCTTGACATGCATAATCAAACAAGTTCTAGTATAACAATT
1 TGACATATCAAATCAAATGGTGTGGTCTTGACATGCATAATCAAACAAGTTCTAGAATAACAATT
*
51359718 CAATACTGACGTACTCATAA
66 CAATACTGACGCACTCATAA
*
51359738 TGACATATCAAATCAAATGGTGTGGTCTTGACATGCATAATCAAGCAAGTTCTAGAATAACAATT
1 TGACATATCAAATCAAATGGTGTGGTCTTGACATGCATAATCAAACAAGTTCTAGAATAACAATT
51359803 CAATACTGACGCACTCATAA
66 CAATACTGACGCACTCATAA
51359823 TGA
1 TGA
51359826 AAGTGAGCAT
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (85 bp):
TGACATATCAAATCAAATGGTGTGGTCTTGACATGCATAATCAAACAAGTTCTAGAATAACAATT
CAATACTGACGCACTCATAA
Found at i:51363709 original size:93 final size:93
Alignment explanation
Indices: 51363599--51363769 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
51363589 GCCCCTAAGT
* *
51363599 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
51363664 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
51363692 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
51363757 CGAGTTCGGATGC
66 CGAGTTCGGATGC
51363770 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:51363766 original size:46 final size:46
Alignment explanation
Indices: 51363594--51363766 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
51363584 AACCCGCCCC
* * * *
51363594 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
51363640 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
51363688 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
51363733 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
51363767 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:51364223 original size:30 final size:30
Alignment explanation
Indices: 51364189--51364248 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
51364179 ATTTAATACG
51364189 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
51364219 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
51364249 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:51372080 original size:37 final size:37
Alignment explanation
Indices: 51372039--51372113 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
51372029 CTCCACACGT
51372039 AGTCATCGGGTCTTTAGAGCTCGGATATAGTACGAGC
1 AGTCATCGGGTCTTTAGAGCTCGGATATAGTACGAGC
51372076 AGTCATCGGGTCTTTAGAGCTCGGATATAGTACGAGC
1 AGTCATCGGGTCTTTAGAGCTCGGATATAGTACGAGC
51372113 A
1 A
51372114 CGAAGCTTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
AGTCATCGGGTCTTTAGAGCTCGGATATAGTACGAGC
Found at i:51372286 original size:47 final size:47
Alignment explanation
Indices: 51372208--51372618 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
51372198 CCCTTCGGGA
* * * * * *
51372208 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
51372255 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51372302 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51372349 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51372396 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51372443 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51372490 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51372537 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
51372584 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
51372619 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:51374903 original size:85 final size:85
Alignment explanation
Indices: 51374804--51375067 Score: 510
Period size: 85 Copynumber: 3.1 Consensus size: 85
51374794 TATTTTATTG
51374804 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
51374869 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
* *
51374889 CCCATGGTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
51374954 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
51374974 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
51375039 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
51375059 CCCATGCTC
1 CCCATGCTC
51375068 ATGGCCGGCC
Statistics
Matches: 175, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 175 1.00
ACGTcount: A:0.27, C:0.26, G:0.09, T:0.39
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:51378446 original size:93 final size:93
Alignment explanation
Indices: 51378318--51378489 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
51378308 GCCCATAAGT
* * *
51378318 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
51378383 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
51378411 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAG
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
51378476 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
51378490 CAAACATTCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:51378485 original size:46 final size:46
Alignment explanation
Indices: 51378310--51378485 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
51378300 TGTAACCCGC
* *
51378310 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
51378356 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** * *
51378402 ACATCTCTCGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
51378449 CCATAAGTGAACTCAGACTCAACTCAGCGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
51378486 TGCCCAAACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 67 0.63
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:51386423 original size:21 final size:21
Alignment explanation
Indices: 51386395--51386446 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
51386385 TAGTACATGG
*
51386395 CCTA-ACCACACGGGCATGTC
1 CCTAGACCACACAGGCATGTC
51386415 CCTAGACCACACAGGCATGTC
1 CCTAGACCACACAGGCATGTC
51386436 CCTAGACCACA
1 CCTAGACCACA
51386447 TGGGTGTGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 4 0.13
21 26 0.87
ACGTcount: A:0.29, C:0.40, G:0.17, T:0.13
Consensus pattern (21 bp):
CCTAGACCACACAGGCATGTC
Found at i:51386733 original size:16 final size:15
Alignment explanation
Indices: 51386712--51386751 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
51386702 CTATGAATAA
51386712 TTTCTTTTTCTTTTCT
1 TTTCTTTTT-TTTTCT
*
51386728 TTTCTTTTTTTTTGT
1 TTTCTTTTTTTTTCT
51386743 TTGTCTTTT
1 TT-TCTTTT
51386752 AATGAGGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.00, C:0.12, G:0.05, T:0.82
Consensus pattern (15 bp):
TTTCTTTTTTTTTCT
Found at i:51386913 original size:15 final size:16
Alignment explanation
Indices: 51386893--51386925 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
51386883 GAATGTTGAA
51386893 TGTAATTCATCT-ATT
1 TGTAATTCATCTAATT
*
51386908 TGTAATTTATCTAATT
1 TGTAATTCATCTAATT
51386924 TG
1 TG
51386926 GTATATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.27, C:0.09, G:0.09, T:0.55
Consensus pattern (16 bp):
TGTAATTCATCTAATT
Found at i:51390674 original size:24 final size:24
Alignment explanation
Indices: 51390637--51390817 Score: 247
Period size: 24 Copynumber: 7.4 Consensus size: 24
51390627 CTGGAGGCCT
*
51390637 AGCCTCTTTTAATAACTAGGGCGA-A
1 AGCC-CTTTTGATAACTAGGGC-ATA
* *
51390662 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTGATAACTAGGGCATA
51390686 AGCCCTTTTGATAACTAGGGCATA
1 AGCCCTTTTGATAACTAGGGCATA
51390710 AGCCCTTTTGATAACTAGGGCATA
1 AGCCCTTTTGATAACTAGGGCATA
51390734 AGCCCTTTTGATAACTAGGGCATA
1 AGCCCTTTTGATAACTAGGGCATA
* * * *
51390758 AGCCCCTTTTTAATAATTGGGGTATA
1 AG-CCC-TTTTGATAACTAGGGCATA
*
51390784 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTGATAACTAGGGCATA
51390808 AGCCCTTTTG
1 AGCCCTTTTG
51390818 CACTTCCTCC
Statistics
Matches: 143, Mismatches: 10, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
23 1 0.01
24 115 0.80
25 10 0.07
26 17 0.12
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTGATAACTAGGGCATA
Found at i:51390791 original size:98 final size:97
Alignment explanation
Indices: 51390637--51390817 Score: 285
Period size: 98 Copynumber: 1.9 Consensus size: 97
51390627 CTGGAGGCCT
51390637 AGCCTCTTTTAATAACTAGGGCGAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACT
1 AGCCTCTTTTAATAACTAGGGCGAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACT
51390702 AGGGCATAAGCCCTTTTGATAACTAGGGCATA
66 AGGGCATAAGCCCTTTTGATAACTAGGGCATA
* * *
51390734 AGCC-CTTTTGATAACTAGGGC-ATAAGCCCCTTTTTAATAATTGGGGTATAAGCCCTTTTGATA
1 AGCCTCTTTTAATAACTAGGGCGA-AAG-CCC-TTTTAATAACTGGGGCATAAGCCCTTTTGATA
*
51390797 ACTGGGGCATAAGCCCTTTTG
63 ACTAGGGCATAAGCCCTTTTG
51390818 CACTTCCTCC
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
95 1 0.01
96 19 0.25
97 7 0.09
98 50 0.65
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (97 bp):
AGCCTCTTTTAATAACTAGGGCGAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACT
AGGGCATAAGCCCTTTTGATAACTAGGGCATA
Found at i:51390888 original size:20 final size:20
Alignment explanation
Indices: 51390863--51390929 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
51390853 TTATGAATAC
* *
51390863 ATCATGTGCCTATCATATAT
1 ATCATGTGCATATCATACAT
51390883 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
51390903 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
51390923 ACCATGT
1 ATCATGT
51390930 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:51395841 original size:39 final size:39
Alignment explanation
Indices: 51395787--51395865 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
51395777 CGAAACAACG
51395787 TTGGACAAATAATCCCTTCGTTCCCCTATGACCATTATC
1 TTGGACAAATAATCCCTTCGTTCCCCTATGACCATTATC
*
51395826 TTGGACAAATAATCCCTTTGTTCCCCTATGACCATTATC
1 TTGGACAAATAATCCCTTCGTTCCCCTATGACCATTATC
51395865 T
1 T
51395866 CCTCATCTTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.25, C:0.29, G:0.10, T:0.35
Consensus pattern (39 bp):
TTGGACAAATAATCCCTTCGTTCCCCTATGACCATTATC
Found at i:51399032 original size:50 final size:50
Alignment explanation
Indices: 51398913--51399062 Score: 234
Period size: 50 Copynumber: 3.0 Consensus size: 50
51398903 CCCTAGCCTC
* *
51398913 TTTTAATAACTGGGGCGA-AATCCCTTTTAATAACTGGGGCATAAGCCC--
1 TTTTAATAACTGGGGC-ATAAGCCCTTTTGATAACTGGGGCATAAGCCCTT
* *
51398961 TTTTAATAACTGGGGCATAAGCCTTTTTGATAACTGAGGCATAAGCCCTT
1 TTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTT
51399011 TTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTT
1 TTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTT
51399061 TT
1 TT
51399063 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
47 1 0.01
48 42 0.45
50 50 0.54
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (50 bp):
TTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTT
Found at i:51399063 original size:24 final size:24
Alignment explanation
Indices: 51398907--51399062 Score: 224
Period size: 24 Copynumber: 6.4 Consensus size: 24
51398897 GTGGAGCCCT
51398907 AGCCTCTTTTAATAACTGGGGCGA-A
1 AGCC-CTTTTAATAACTGGGGC-ATA
*
51398932 ATCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
51398956 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* * *
51398980 AGCCTTTTTGATAACTGAGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
51399004 AGCCCTTTTTTAATAACTGGGGCATA
1 AGCCC--TTTTAATAACTGGGGCATA
*
51399030 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
51399054 AGCCCTTTT
1 AGCCCTTTT
51399063 GCACTTCCTC
Statistics
Matches: 119, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
23 1 0.01
24 93 0.78
25 3 0.03
26 22 0.18
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:51399137 original size:20 final size:20
Alignment explanation
Indices: 51399112--51399178 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
51399102 TTATGTATAC
*
51399112 ATCATGTGCCTATCATACAT
1 ATCATGTGCATATCATACAT
51399132 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
51399152 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
51399172 ACCATGT
1 ATCATGT
51399179 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:51401561 original size:7 final size:7
Alignment explanation
Indices: 51401547--51401634 Score: 86
Period size: 7 Copynumber: 12.0 Consensus size: 7
51401537 TAAAATCTCT
51401547 GGGTTTA
1 GGGTTTA
*
51401554 GAGTTTA
1 GGGTTTA
51401561 GGGTTTA
1 GGGTTTA
51401568 GGGTTTA
1 GGGTTTA
51401575 GGGTTTA
1 GGGTTTA
51401582 GGGTTTTA
1 GGG-TTTA
*
51401590 TGGTTTTA
1 -GGGTTTA
*
51401598 TGGTTTTA
1 -GGGTTTA
*
51401606 TGGTTTTA
1 -GGGTTTA
51401614 GGGTTTA
1 GGGTTTA
*
51401621 GAGTTTA
1 GGGTTTA
*
51401628 AGGTTTA
1 GGGTTTA
51401635 TGGTGGAAAA
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
7 46 0.64
8 24 0.33
9 2 0.03
ACGTcount: A:0.17, C:0.00, G:0.34, T:0.49
Consensus pattern (7 bp):
GGGTTTA
Found at i:51401594 original size:8 final size:8
Alignment explanation
Indices: 51401578--51401619 Score: 66
Period size: 8 Copynumber: 5.2 Consensus size: 8
51401568 GGGTTTAGGG
*
51401578 TTTAGGGT
1 TTTATGGT
51401586 TTTATGGT
1 TTTATGGT
51401594 TTTATGGT
1 TTTATGGT
51401602 TTTATGGT
1 TTTATGGT
*
51401610 TTTAGGGT
1 TTTATGGT
51401618 TT
1 TT
51401620 AGAGTTTAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.12, C:0.00, G:0.29, T:0.60
Consensus pattern (8 bp):
TTTATGGT
Found at i:51401602 original size:16 final size:16
Alignment explanation
Indices: 51401564--51401619 Score: 80
Period size: 16 Copynumber: 3.6 Consensus size: 16
51401554 GAGTTTAGGG
*
51401564 TTTAGGG-TTTA-GGG
1 TTTAGGGTTTTATGGT
51401578 TTTAGGGTTTTATGGT
1 TTTAGGGTTTTATGGT
*
51401594 TTTATGGTTTTATGGT
1 TTTAGGGTTTTATGGT
51401610 TTTAGGGTTT
1 TTTAGGGTTT
51401620 AGAGTTTAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
14 7 0.19
15 4 0.11
16 26 0.70
ACGTcount: A:0.12, C:0.00, G:0.32, T:0.55
Consensus pattern (16 bp):
TTTAGGGTTTTATGGT
Found at i:51404974 original size:26 final size:24
Alignment explanation
Indices: 51404930--51404977 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
51404920 ATTTGTCTTA
*
51404930 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
51404954 ATATTTGATTTATTATATTTTTAA
1 ATATTTG-TTT-TTATATTTTTAA
51404978 TTTTTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:51406637 original size:38 final size:39
Alignment explanation
Indices: 51406592--51406692 Score: 123
Period size: 41 Copynumber: 2.6 Consensus size: 39
51406582 GAAATCCTTG
*
51406592 TATAATTATTGTAATTATAATTTAG-GATCAAATATTAT
1 TATAATTATTGTAATTATAATTTAGTGATCAAACATTAT
* * * *
51406630 TATAATTACTATAATTATAAGTTTTGTTGGTCAAACATTAT
1 TATAATTATTGTAATTATAA-TTTAG-TGATCAAACATTAT
*
51406671 TATAATTATGGTAATTATAATT
1 TATAATTATTGTAATTATAATT
51406693 ATTATATTCA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
38 18 0.35
39 4 0.08
40 2 0.04
41 28 0.54
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.48
Consensus pattern (39 bp):
TATAATTATTGTAATTATAATTTAGTGATCAAACATTAT
Found at i:51420942 original size:51 final size:51
Alignment explanation
Indices: 51420883--51420994 Score: 215
Period size: 51 Copynumber: 2.2 Consensus size: 51
51420873 CGGGCATGTG
51420883 ATTATTTCATACATCCATAACATTCATATAATTCAAGTAAACACATTCCAC
1 ATTATTTCATACATCCATAACATTCATATAATTCAAGTAAACACATTCCAC
51420934 ATTATTTCATACATCCATAACATTCATATAATTCAAGTAAACACATTCCAC
1 ATTATTTCATACATCCATAACATTCATATAATTCAAGTAAACACATTCCAC
51420985 ATTCATTTCA
1 ATT-ATTTCA
51420995 AGCATAAAAG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 54 0.90
52 6 0.10
ACGTcount: A:0.40, C:0.23, G:0.02, T:0.35
Consensus pattern (51 bp):
ATTATTTCATACATCCATAACATTCATATAATTCAAGTAAACACATTCCAC
Found at i:51438872 original size:12 final size:12
Alignment explanation
Indices: 51438855--51438880 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51438845 TTTTAGTAAG
51438855 TTTTATAATTTT
1 TTTTATAATTTT
51438867 TTTTATAATTTT
1 TTTTATAATTTT
51438879 TT
1 TT
51438881 ACATGATATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTATAATTTT
Found at i:51440925 original size:153 final size:154
Alignment explanation
Indices: 51440734--51441029 Score: 400
Period size: 153 Copynumber: 1.9 Consensus size: 154
51440724 ACTAGACGCT
* *
51440734 TTTTTTGCATCGTTGATTCTGAAAAATAATTTTGAGAAGATGGT-TCTGAAAAAATATCTCGGGA
1 TTTTTTGCATCGTTAATTCTAAAAAATAATTTTGAGAAGATGGTAT-TGAAAAAATATCTCGGGA
* ** ** *
51440798 TTCTCGGGAAATCTGATAGTTGGGGTTAAAAAACACTTCAACTGGGATGCACTTTCAGCAAAAGT
65 TTCACAAGAAATCTGATAGTTGGGGTTAAAAAACACTTCAACTAAGATGCACTGTCAGCAAAAGT
51440863 ACT-AAAAAGCTCCTAACTGGACTC
130 ACTGAAAAAGCTCCTAACTGGACTC
* * * *
51440887 TTTTTTGTATTGTTAATTCTAAAAAATATATTTT-AGAAGATGGTATTGACAAAATATCTTGGGA
1 TTTTTTGCATCGTTAATTCTAAAAAATA-ATTTTGAGAAGATGGTATTGAAAAAATATCTCGGGA
* * ** *
51440951 TTCACAAGAAATTTGATAGTTGGGGTTCAAAAATGCTTCAAGTAAGATGCACTGTCAGCAAAAGT
65 TTCACAAGAAATCTGATAGTTGGGGTTAAAAAACACTTCAACTAAGATGCACTGTCAGCAAAAGT
51441016 ACTGAAAAAGCTCC
130 ACTGAAAAAGCTCC
51441030 CAGTTGGATG
Statistics
Matches: 123, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
153 107 0.87
154 16 0.13
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (154 bp):
TTTTTTGCATCGTTAATTCTAAAAAATAATTTTGAGAAGATGGTATTGAAAAAATATCTCGGGAT
TCACAAGAAATCTGATAGTTGGGGTTAAAAAACACTTCAACTAAGATGCACTGTCAGCAAAAGTA
CTGAAAAAGCTCCTAACTGGACTC
Found at i:51444222 original size:56 final size:56
Alignment explanation
Indices: 51444160--51444324 Score: 192
Period size: 56 Copynumber: 2.9 Consensus size: 56
51444150 TAACTCCTAA
* *
51444160 TTTATTAAATGAGACAATGA-AAAAACAATTTGTACAAACATATTCAAAAGAA-CTAT
1 TTTATTAAATGAAACAAT-ATAAAAACAATTTGTACAAA-ATATTCAAAAAAATCTAT
* * *
51444216 TTTATTAAATGAAATAATATAAAAATAATTTGTATTAAAATATTCAAAAAAACTTCTAT
1 TTTATTAAATGAAACAATATAAAAACAATTTGTA-CAAAATATTCAAAAAAA--TCTAT
* *
51444275 TTCATTAAATAAAACAATATAAAAACAATTTGTACAAATATATT-AAAAAA
1 TTTATTAAATGAAACAATATAAAAACAATTTGTACAAA-ATATTCAAAAAA
51444325 TAAATCAATG
Statistics
Matches: 93, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
55 1 0.01
56 41 0.44
57 3 0.03
58 9 0.10
59 39 0.42
ACGTcount: A:0.55, C:0.08, G:0.05, T:0.33
Consensus pattern (56 bp):
TTTATTAAATGAAACAATATAAAAACAATTTGTACAAAATATTCAAAAAAATCTAT
Found at i:51446243 original size:18 final size:18
Alignment explanation
Indices: 51446220--51446258 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
51446210 TAAGTTACAA
51446220 AAATAA-AATAAAAATATT
1 AAATAATAATAAAAA-ATT
*
51446238 AAATAATATTAAAAAATT
1 AAATAATAATAAAAAATT
51446256 AAA
1 AAA
51446259 ATTAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATAATAATAAAAAATT
Found at i:51446253 original size:31 final size:32
Alignment explanation
Indices: 51446196--51446260 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 32
51446186 ATAAAAAATT
* *
51446196 ATAAAAATATTAATTAAGTTACAAAAA-TAAA
1 ATAAAAATATTAAATAAATTACAAAAATTAAA
51446227 ATAAAAATATTAAATAATATTA-AAAAATTAAA
1 ATAAAAATATTAAATAA-ATTACAAAAATTAAA
51446259 AT
1 AT
51446261 TAACCCTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
31 21 0.70
32 9 0.30
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (32 bp):
ATAAAAATATTAAATAAATTACAAAAATTAAA
Found at i:51449331 original size:46 final size:46
Alignment explanation
Indices: 51449111--51449430 Score: 205
Period size: 46 Copynumber: 6.8 Consensus size: 46
51449101 CGGTTATTTG
* * * *
51449111 TGTGCTAGTGTAA-AACATGTCTGGGACAT-GCATCGGCCACGTTATGA
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTACG--A-GA
* * * *
51449158 -GAGCCAGTGTAAGACCATGTCTGGGACATGACATCGACATTGA-GACGA
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC--T-ACGA-GA
* *
51449206 -GAGCCAATGTAAGA-CATGTCTAGGACAT-GCATCGGCCT-CGAGA
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGG-CTACGAGA
* * ** *
51449249 TGTAAGCCAATGTAAGA-CATGTCTGGGACA-CACATCGGCTACAAGA
1 TGT--GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTACGAGA
* *
51449295 TGTGTCAGTGTAAGACCATGTCTAGGACATGGCATCGG-TACGGATA
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTAC-GAGA
* * * *
51449341 TGTGAAAGCTAGTCTAAGACCATGTCTGGGACATGGCATCGACTTGACG-GA
1 TGT----GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC-T-ACGAGA
*
51449392 TGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
51449431 ATTATAGCCT
Statistics
Matches: 218, Mismatches: 33, Indels: 44
0.74 0.11 0.15
Matches are distributed among these distances:
43 2 0.01
44 13 0.06
45 18 0.08
46 63 0.29
47 61 0.28
48 22 0.10
50 31 0.14
51 4 0.02
52 2 0.01
53 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (46 bp):
TGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTACGAGA
Found at i:51449365 original size:50 final size:45
Alignment explanation
Indices: 51449300--51449429 Score: 136
Period size: 47 Copynumber: 2.7 Consensus size: 45
51449290 CAAGATGTGT
*
51449300 CAGTGTAAGACCATGTCTAGGACATGGCATCGGT-ACGGATATGTGAAAGC
1 CAGTCTAAGACCATGTCTAGGACATGGCATCGGTGACGG--A--TG--AGC
* * *
51449350 TAGTCTAAGACCATGTCTGGGACATGGCATCGACTTGACGGATGAGC
1 CAGTCTAAGACCATGTCTAGGACATGGCATCG--GTGACGGATGAGC
*
51449397 CAGTGTAAGACCATGTCTAGGACATGGCATCGG
1 CAGTCTAAGACCATGTCTAGGACATGGCATCGG
51449430 CATTATAGCC
Statistics
Matches: 69, Mismatches: 8, Indels: 11
0.78 0.09 0.12
Matches are distributed among these distances:
47 32 0.46
49 2 0.03
50 29 0.42
51 1 0.01
52 1 0.01
53 4 0.06
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (45 bp):
CAGTCTAAGACCATGTCTAGGACATGGCATCGGTGACGGATGAGC
Found at i:51449411 original size:97 final size:94
Alignment explanation
Indices: 51449167--51449430 Score: 285
Period size: 97 Copynumber: 2.8 Consensus size: 94
51449157 AGAGCCAGTG
*
51449167 TAAGACCATGTCTGGGACATGACATCGACATTGA-GACGA-GAGCCAATGTAAGA-CATGTCTAG
1 TAAGACCATGTCTGGGACATGACATCGAC-TTGACG--GATGAGCCAGTGTAAGACCATGTCTAG
*
51449229 GACAT-GCATCGGCCTCGAGATGTAAGCCAATG
63 GACATGGCATCGG-CTCGAGATGTAAGCCAATC
* * * * *
51449261 TAAGA-CATGTCTGGGACA-CACATCGGC-T-ACAAGATGTGTCAGTGTAAGACCATGTCTAGGA
1 TAAGACCATGTCTGGGACATGACATCGACTTGAC-GGATGAGCCAGTGTAAGACCATGTCTAGGA
* * *
51449322 CATGGCATCGG-TACGGATATGTGAAAGCTAGTC
65 CATGGCATCGGCT-C-GAGATGT--AAGCCAATC
*
51449355 TAAGACCATGTCTGGGACATGGCATCGACTTGACGGATGAGCCAGTGTAAGACCATGTCTAGGAC
1 TAAGACCATGTCTGGGACATGACATCGACTTGACGGATGAGCCAGTGTAAGACCATGTCTAGGAC
51449420 ATGGCATCGGC
66 ATGGCATCGGC
51449431 ATTATAGCCT
Statistics
Matches: 140, Mismatches: 16, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
89 3 0.02
90 13 0.09
91 15 0.11
92 20 0.14
93 13 0.09
94 16 0.11
95 13 0.09
96 6 0.04
97 39 0.28
98 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (94 bp):
TAAGACCATGTCTGGGACATGACATCGACTTGACGGATGAGCCAGTGTAAGACCATGTCTAGGAC
ATGGCATCGGCTCGAGATGTAAGCCAATC
Found at i:51450559 original size:20 final size:21
Alignment explanation
Indices: 51450520--51450559 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
51450510 GTTATAATGA
*
51450520 CCACATGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
51450541 CCACACGGGCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
51450560 GTTTCAAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.30, T:0.23
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:51457090 original size:27 final size:26
Alignment explanation
Indices: 51457073--51457142 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
51457063 ATATTAAGTC
51457073 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
51457100 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
51457128 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
51457143 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:51457136 original size:28 final size:28
Alignment explanation
Indices: 51457073--51457170 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
51457063 ATATTAAGTC
*
51457073 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
51457100 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51457128 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
51457157 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51457171 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51463469 original size:43 final size:42
Alignment explanation
Indices: 51463337--51463500 Score: 188
Period size: 42 Copynumber: 3.9 Consensus size: 42
51463327 TTAGGGTTAC
* * *
51463337 TGAGATTACGTGTAAGACCATATCTGGGATATGACATCGATA
1 TGAGATTTCGAGTAAGACCATATCTGGGATATGGCATCGATA
*
51463379 TGAGACTTCGTA-TAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTTCG-AGTAAGACCATATCTGGGATATGGCATCGATA
* * *
51463421 TGAGATTTCGAGTAAGGCCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTTCGAGTAAGACCATATCTGGGATA-TGGCATCGATA
* * * *
51463464 CGAGATTAC-ATGTAAGACCATATTTAGGATATGGCAT
1 TGAGATTTCGA-GTAAGACCATATCTGGGATATGGCAT
51463501 TGGTATAGTA
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
41 1 0.01
42 69 0.67
43 33 0.32
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTTCGAGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:51463494 original size:85 final size:84
Alignment explanation
Indices: 51463337--51463500 Score: 204
Period size: 85 Copynumber: 1.9 Consensus size: 84
51463327 TTAGGGTTAC
* * * *
51463337 TGAGATTACGTGTAAGACCATATCTGGGATATGACATCGATATGAGACTTCGTATAAGACCATAT
1 TGAGATTACGAGTAAGACCATAGCTGGGATATGACATCGATACGAGACTTCATATAAGACCATAT
*
51463402 CTGGGATATGGCATCGATA
66 CTAGGATATGGCATCGATA
* * * * *
51463421 TGAGATTTCGAGTAAGGCCATAGCTGGGCTATTGGCATCGATACGAGA-TTACATGTAAGACCAT
1 TGAGATTACGAGTAAGACCATAGCTGGGATA-TGACATCGATACGAGACTT-CATATAAGACCAT
*
51463485 ATTTAGGATATGGCAT
64 ATCTAGGATATGGCAT
51463501 TGGTATAGTA
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
84 28 0.42
85 39 0.58
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (84 bp):
TGAGATTACGAGTAAGACCATAGCTGGGATATGACATCGATACGAGACTTCATATAAGACCATAT
CTAGGATATGGCATCGATA
Found at i:51472641 original size:20 final size:20
Alignment explanation
Indices: 51472596--51472688 Score: 82
Period size: 20 Copynumber: 4.7 Consensus size: 20
51472586 AAAGCACTGT
*
51472596 AGTGCAAATAGAGGCA-TGA
1 AGTGCAAATAGAGGCACCGA
* *
51472615 TTA-TGCAATTAGAGGCACCGG
1 --AGTGCAAATAGAGGCACCGA
* * *
51472636 AGTGCAAACAGAGACACCAA
1 AGTGCAAATAGAGGCACCGA
* *
51472656 AGTGTAAATAGAGGCACTGA
1 AGTGCAAATAGAGGCACCGA
51472676 AGTGCAAATAGAG
1 AGTGCAAATAGAG
51472689 AAACTGAAGT
Statistics
Matches: 56, Mismatches: 14, Indels: 5
0.75 0.19 0.07
Matches are distributed among these distances:
19 1 0.02
20 53 0.95
21 2 0.04
ACGTcount: A:0.41, C:0.15, G:0.28, T:0.16
Consensus pattern (20 bp):
AGTGCAAATAGAGGCACCGA
Found at i:51472694 original size:20 final size:20
Alignment explanation
Indices: 51472590--51472699 Score: 80
Period size: 20 Copynumber: 5.5 Consensus size: 20
51472580 TATACAAAAG
* *
51472590 CACTGTAGTGCAAATAGAGG
1 CACTGAAGTGCAAATAGAGA
* *
51472610 CA-TGATTA-TGCAATTAGAGG
1 CACTGA--AGTGCAAATAGAGA
* * *
51472630 CACCGGAGTGCAAACAGAGA
1 CACTGAAGTGCAAATAGAGA
** * *
51472650 CACCAAAGTGTAAATAGAGG
1 CACTGAAGTGCAAATAGAGA
51472670 CACTGAAGTGCAAATAGAGA
1 CACTGAAGTGCAAATAGAGA
*
51472690 AACTGAAGTG
1 CACTGAAGTG
51472700 TTAACCCGTA
Statistics
Matches: 69, Mismatches: 17, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
19 3 0.04
20 64 0.93
21 2 0.03
ACGTcount: A:0.40, C:0.15, G:0.27, T:0.17
Consensus pattern (20 bp):
CACTGAAGTGCAAATAGAGA
Found at i:51479842 original size:19 final size:19
Alignment explanation
Indices: 51479797--51479846 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
51479787 TTAAAATATA
51479797 TATAATTTTTTAATAATTT
1 TATAATTTTTTAATAATTT
*
51479816 TATGATTTTTTAATAATTT
1 TATAATTTTTTAATAATTT
*
51479835 T-TAAATTTTTAA
1 TATAATTTTTTAA
51479847 AGGGATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 9 0.32
19 19 0.68
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
TATAATTTTTTAATAATTT
Found at i:51482981 original size:33 final size:33
Alignment explanation
Indices: 51482944--51483012 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
51482934 TTTATGAGTT
*
51482944 AAAAAAAAAGATA--AAG-AAAAAACAAAGGAA
1 AAAAAAAAAGAAAGTAAGCAAAAAACAAAGGAA
* * *
51482974 AAAAAAAAAGAAAGTGAGCCAAAAACAAAGGCA
1 AAAAAAAAAGAAAGTAAGCAAAAAACAAAGGAA
51483007 AAAAAA
1 AAAAAA
51483013 TATAAATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 12 0.38
32 2 0.06
33 18 0.56
ACGTcount: A:0.75, C:0.07, G:0.14, T:0.03
Consensus pattern (33 bp):
AAAAAAAAAGAAAGTAAGCAAAAAACAAAGGAA
Found at i:51487170 original size:3 final size:3
Alignment explanation
Indices: 51487162--51487186 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
51487152 CAAATAAATG
51487162 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
51487187 AGACTAAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:51488876 original size:95 final size:97
Alignment explanation
Indices: 51488673--51488953 Score: 266
Period size: 95 Copynumber: 2.9 Consensus size: 97
51488663 CCACATTATA
*
51488673 AGAGCCAGTGTAAGACCATGTTTGGGACATGACATCGGCATTGAGACAAGAGCTAGTGTAAGACC
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCATT-AGACAAGAGCTAGTGTAAGACC
* ** * **
51488738 ATGTTTAGGACATGGCATCGGCCTCGACATTTG
65 ATGTTTAGGACATGGCATCGACAACAACAGATG
* ** * * * *
51488771 AAAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TT-GATATGTG-TGAGTGTAAGACC
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCATTAGACAAGAGCT-AGTGTAAGACC
* *
51488833 ATGTATT-GGACATGGCATTGACAACAATAGATG
65 ATGT-TTAGGACATGGCATCGACAACAACAGATG
* * *
51488866 AGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCCTCGATACATGAGAG-TCAGTGTAAG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCAT-TAGACA--AGAGCT-AGTGTAAG
* * *
51488930 ACCATGTCTGGGACATGACATCGA
62 ACCATGTTTAGGACATGGCATCGA
51488954 TTTTGATGTG
Statistics
Matches: 146, Mismatches: 29, Indels: 14
0.77 0.15 0.07
Matches are distributed among these distances:
94 1 0.01
95 73 0.50
96 3 0.02
97 2 0.01
98 36 0.25
99 1 0.01
100 30 0.21
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (97 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGGCATTAGACAAGAGCTAGTGTAAGACCA
TGTTTAGGACATGGCATCGACAACAACAGATG
Found at i:51488992 original size:48 final size:49
Alignment explanation
Indices: 51488633--51488994 Score: 244
Period size: 50 Copynumber: 7.5 Consensus size: 49
51488623 CATGTGTGCT
* * * *
51488633 AGTGTAAGA-CATGTCTGAGACATG-CATC-AGCCAC-ATTATAAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCGA-CCTCGATAATGAGAGCC
* * * * * *
51488679 AGTGTAAGACCATGTTTGGGACATGACATCGGCATTGAGACA--AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATA-ATGAGAGCC
* * * * * * * **
51488727 AGTGTAAGACCATGTTTAGGACATGGCATCGGCCTCGACATTTGAAAGTT
1 AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATA-ATGAGAGCC
* * * * *
51488777 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCTTGAT-ATGTGTG--
1 AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATAATGAGAGCC
* * * * ** *
51488822 AGTGTAAGACCATGTATTGGACATGGCATTGACAACAATAGATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATA-ATGAGAGCC
* *
51488872 AGTGTAAGACCATGTCTGGGACATGACATCGGCCTCGATACATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATA-ATGAGAGCC
** * *
51488922 AGTGTAAGACCATGTCTGGGACATGACATCGATTTTGAT-GTGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATAATG-AGAGCC
*
51488970 AGTGTAAGACCATGTCCGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
51488995 GCGTCGACAT
Statistics
Matches: 249, Mismatches: 54, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
45 28 0.11
46 11 0.04
47 16 0.06
48 79 0.32
49 6 0.02
50 109 0.44
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATAATGAGAGCC
Found at i:51494639 original size:23 final size:23
Alignment explanation
Indices: 51494585--51494639 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
51494575 AAAAGAGATA
* * *
51494585 AAAATAAATGATGAGATATTAAT
1 AAAATAAGTAATGAGATATAAAT
*
51494608 AATAA-AAGTAATGATATATAAAT
1 AA-AATAAGTAATGAGATATAAAT
51494631 AAAATAAGT
1 AAAATAAGT
51494640 GTGCTAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 2 0.08
23 22 0.85
24 2 0.08
ACGTcount: A:0.60, C:0.00, G:0.11, T:0.29
Consensus pattern (23 bp):
AAAATAAGTAATGAGATATAAAT
Found at i:51494713 original size:3 final size:3
Alignment explanation
Indices: 51494707--51495042 Score: 170
Period size: 3 Copynumber: 111.0 Consensus size: 3
51494697 AAAGGAAAAT
51494707 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
51494754 ATA GTA ATA ATA ATA AAA AGGT- ATA ATA ATA CATTA GATA GTA ACA
1 ATA ATA ATA ATA ATA ATA A--TA ATA ATA ATA -A-TA -ATA ATA ATA
* * * *
51494800 A-A GGTA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA GTG ATA
1 ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
51494845 TTA GTA GTA ATA ATA ATA ATA ATA GAAA ATA TTA GTA CGTTA ATA AGA
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA --ATA ATA ATA
* * * *
51494893 ATA ATA TATG TTA ATA ACA ATA ATA A-C ATA A-A A-A ATA ATA AT-
1 ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * * *
51494935 ATG GTA AAA ATTA GTA ATA AT- ATG TTA ATA AAA ATA ATA GTA ATGA
1 ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A
* ** * *
51494981 A-A ATA ATA CTA ACG GTA ATA ATA ATA ATA GA-A ATA AAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* *
51495025 GTA ATA ATA TTA ATA ATA
1 ATA ATA ATA ATA ATA ATA
51495043 TTAAAAAAAT
Statistics
Matches: 249, Mismatches: 63, Indels: 42
0.70 0.18 0.12
Matches are distributed among these distances:
2 16 0.06
3 215 0.86
4 13 0.05
5 5 0.02
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:51496132 original size:38 final size:37
Alignment explanation
Indices: 51496082--51496161 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 37
51496072 GTTAAGTCTG
* *
51496082 TTGGGTTTGGGTATTGGGTTTTCATGGATTTAGGGAT
1 TTGGGTTTGGGTATTGGGTTGTAATGGATTTAGGGAT
*
51496119 TTGGGTATTGGGTATTGGGTTGTAATGGGTTTAGGGAT
1 TTGGGT-TTGGGTATTGGGTTGTAATGGATTTAGGGAT
51496157 TTGGG
1 TTGGG
51496162 GAGGTTGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 6 0.15
38 33 0.85
ACGTcount: A:0.14, C:0.01, G:0.41, T:0.44
Consensus pattern (37 bp):
TTGGGTTTGGGTATTGGGTTGTAATGGATTTAGGGAT
Found at i:51496796 original size:64 final size:64
Alignment explanation
Indices: 51496713--51496832 Score: 195
Period size: 64 Copynumber: 1.9 Consensus size: 64
51496703 TAAAAAATTG
* ** * *
51496713 AAAATACCTTAGTGTGTGACCTGAGGCTCAACTCACCTTTTGTAATATGAGTTGATAGAAACTA
1 AAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATAGAAACTA
51496777 AAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGAT
1 AAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGAT
51496833 TTTTTTGAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 51 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (64 bp):
AAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATAGAAACTA
Found at i:51496899 original size:75 final size:75
Alignment explanation
Indices: 51496771--51497071 Score: 370
Period size: 75 Copynumber: 4.0 Consensus size: 75
51496761 GAGTTGATAG
** *
51496771 AAACTAAAAATACCTCAGCATGTGACCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTT
1 AAACTAAAAATACCTCAGCGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
51496836 TTTGAAACAT
66 TTTGAAACAT
* ** *
51496846 AAACTAAAAATACCTCAGTGCGTGATTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
1 AAACTAAAAATACCTCAGCGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
51496911 TTTGAAACAT
66 TTTGAAACAT
* * * ** * * *
51496921 AAATTGAAAATACCTCAGTGCGTGATTTGAGGCTCAACTCACTTCTCACAATATGAGTTCATTTT
1 AAACTAAAAATACCTCAGCGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---T
*
51496986 TTTTTTGAAAAAT
63 TTTTTTGAAACAT
* * * *
51496999 AGGAACTTAAGATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGA-T
1 A--AACTAAAAATACCTCAGCGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
51497063 TTTTTGAAA
64 TTTTTGAAA
51497072 AACAGAAATT
Statistics
Matches: 198, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
75 125 0.63
76 10 0.05
78 14 0.07
80 49 0.25
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.33
Consensus pattern (75 bp):
AAACTAAAAATACCTCAGCGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTGAAACAT
Found at i:51498022 original size:26 final size:26
Alignment explanation
Indices: 51497983--51498036 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
51497973 TGGGTTAGGT
*
51497983 AACTCTTTCTCATCCATCTCAGTGAG
1 AACTCTTTCCCATCCATCTCAGTGAG
*
51498009 AACTCTTTCCCATCCATCTCAGTTAG
1 AACTCTTTCCCATCCATCTCAGTGAG
51498035 AA
1 AA
51498037 TCAAAGCTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.33
Consensus pattern (26 bp):
AACTCTTTCCCATCCATCTCAGTGAG
Found at i:51510256 original size:95 final size:94
Alignment explanation
Indices: 51510088--51510305 Score: 205
Period size: 95 Copynumber: 2.3 Consensus size: 94
51510078 TTTGAAAGTT
* * * *
51510088 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTGAGTGTAAGAACATGTATGAG
1 AGTGTAAGACCATGTCTGGGACATGACATCGGCTCGATATGAGTCAGTGTAAGAACATGTATGAG
51510153 ACATGACATTGACAAC-A-ATAGATGAG-AGCC
66 --A-GACA-TGACAACGATATAGATGAGAAGCC
*
51510183 AGTGTAAGACCATGTCTGGGACATGACATCGGCCTCGATACATGAGAGTCAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGACATCGG-CTCGAT--AT--GAGTCAGTGTAAGAACATGT
* * * * *
51510248 CTG-G-GACATGACATCGATTTTGATGTGTAAGCC
61 ATGAGAGACATGACAACGATATAGATGAG-AAGCC
51510281 AGTGTAAGACCATGTAC-GGGACATG
1 AGTGTAAGACCATGT-CTGGGACATG
51510306 GCGTCGGCAT
Statistics
Matches: 103, Mismatches: 10, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
94 6 0.06
95 36 0.35
96 11 0.11
98 29 0.28
99 2 0.02
100 19 0.18
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGACATCGGCTCGATATGAGTCAGTGTAAGAACATGTATGAG
AGACATGACAACGATATAGATGAGAAGCC
Found at i:51510303 original size:48 final size:49
Alignment explanation
Indices: 51509944--51510305 Score: 237
Period size: 50 Copynumber: 7.5 Consensus size: 49
51509934 CATGTGTGCT
* * * * *
51509944 AGTGTAAGA-CATGTCTGAGACATG-CATTG-GCTAC-ATTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGACATCGACCT-CGATAATGAGAGCC
* * * * * *
51509990 AGTGTAAGACCATGTTTGGGACATGACATCGGCATTGAGACA--AGAGCT
1 AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATA-ATGAGAGCC
* * * * * * **
51510038 AGTGTAAGACCATGTTTAGGACATGGCATCGACCTCGACATTTGAAAGTT
1 AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATA-ATGAGAGCC
* * * * *
51510088 AGTGTAAGACCATGTCTGGGACATGGCATCG-GCTTGAT-ATGTGTG--
1 AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATAATGAGAGCC
* * * * ** *
51510133 AGTGTAAGAACATGTATGAGACATGACATTGACAACAATAGATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATA-ATGAGAGCC
* *
51510183 AGTGTAAGACCATGTCTGGGACATGACATCGGCCTCGATACATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATA-ATGAGAGCC
** * *
51510233 AGTGTAAGACCATGTCTGGGACATGACATCGATTTTGAT-GTGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATAATG-AGAGCC
51510281 AGTGTAAGACCATGTAC-GGGACATG
1 AGTGTAAGACCATGT-CTGGGACATG
51510306 GCGTCGGCAT
Statistics
Matches: 247, Mismatches: 55, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
45 26 0.11
46 11 0.04
47 16 0.06
48 77 0.31
49 8 0.03
50 109 0.44
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGACATCGACCTCGATAATGAGAGCC
Found at i:51515849 original size:3 final size:3
Alignment explanation
Indices: 51515696--51515837 Score: 56
Period size: 3 Copynumber: 47.0 Consensus size: 3
51515686 AAATGTACAC
* * * * * * *
51515696 TAA TAT TAA TAA AAA TAA TAA TAG TAA TAA TATG TAT TAA CAGG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA
* * * * * * *
51515743 -AA GAA TAA TAG TAA TAA TAA T-T TAA AAA TGA TAA TAG TAA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
51515789 TAA AAA TAA TAG TGA TAA TAA TGA TAAA TACA -AA TAA TAA TAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TA-A TAA TAA TAA TAA TAA
51515835 TAA
1 TAA
51515838 GACAGATAAT
Statistics
Matches: 96, Mismatches: 36, Indels: 14
0.66 0.25 0.10
Matches are distributed among these distances:
2 4 0.04
3 86 0.90
4 6 0.06
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:51516015 original size:3 final size:3
Alignment explanation
Indices: 51516009--51516135 Score: 62
Period size: 3 Copynumber: 41.0 Consensus size: 3
51515999 AAAGGAAAAT
* ** * * *
51516009 ATA ATA AAA ATA ATA ATA GCA ATA ATA CT- ATA GTA ATA ATA ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
51516056 AGGT- ATA ATA ATA CATTA GATA A-A AAA AGTGA ATA ATA ATA ATA ATG
1 A--TA ATA ATA ATA -A-TA -ATA ATA ATA A-T-A ATA ATA ATA ATA ATA
* * * *
51516103 ATA ATA GTG ATA TTA GTA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
51516136 GAAAATATTA
Statistics
Matches: 92, Mismatches: 23, Indels: 18
0.69 0.17 0.14
Matches are distributed among these distances:
2 4 0.04
3 78 0.85
4 5 0.05
5 5 0.05
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:51516105 original size:28 final size:29
Alignment explanation
Indices: 51515992--51516108 Score: 77
Period size: 28 Copynumber: 4.2 Consensus size: 29
51515982 GTATGTGTAA
* **
51515992 ATAAAAAAAAGGAA-AAT-ATA-ATAAAA
1 ATAATAAAAAGGAATAATAATACATAATG
* * * * *
51516018 ATAAT-AATAGCAATAATACTATAGTAATA
1 ATAATAAAAAGGAATAATAATACA-TAATG
* *
51516047 ATAATAAAAAGGTATAATAATACATTA-G
1 ATAATAAAAAGGAATAATAATACATAATG
51516075 ATAA-AAAAAGTGAATAATAATA-ATAATG
1 ATAATAAAAAG-GAATAATAATACATAATG
51516103 ATAATA
1 ATAATA
51516109 GTGATATTAG
Statistics
Matches: 69, Mismatches: 14, Indels: 13
0.72 0.15 0.14
Matches are distributed among these distances:
25 6 0.09
26 7 0.10
27 11 0.16
28 20 0.29
29 12 0.17
30 13 0.19
ACGTcount: A:0.63, C:0.03, G:0.09, T:0.26
Consensus pattern (29 bp):
ATAATAAAAAGGAATAATAATACATAATG
Found at i:51516209 original size:18 final size:18
Alignment explanation
Indices: 51516188--51516292 Score: 56
Period size: 18 Copynumber: 5.7 Consensus size: 18
51516178 AATAAAAACA
51516188 TAAAAAATAATAATATGG
1 TAAAAAATAATAATATGG
* *
51516206 TAAAAATTAGTAATAATTTGT
1 TAAAAA--A-TAATAATATGG
*
51516227 TAATAAA-AATAATA--G
1 TAAAAAATAATAATATGG
* *
51516242 TAATGAAAATAATACTAACGG
1 TAA--AAAATAATAAT-ATGG
*
51516263 T-AAAAATAATAATAATAG
1 TAAAAAATAATAAT-ATGG
*
51516281 AAAAAAATAATA
1 TAAAAAATAATA
51516293 GTAATAATAT
Statistics
Matches: 66, Mismatches: 11, Indels: 19
0.69 0.11 0.20
Matches are distributed among these distances:
15 3 0.05
17 9 0.14
18 24 0.36
19 12 0.18
20 2 0.03
21 16 0.24
ACGTcount: A:0.61, C:0.02, G:0.09, T:0.29
Consensus pattern (18 bp):
TAAAAAATAATAATATGG
Found at i:51516250 original size:15 final size:15
Alignment explanation
Indices: 51516227--51516299 Score: 56
Period size: 15 Copynumber: 4.4 Consensus size: 15
51516217 AATAATTTGT
51516227 TAATAAAAATAATAG
1 TAATAAAAATAATAG
* *
51516242 TAATGAAAATAATAC
1 TAATAAAAATAATAG
*
51516257 TAACGGTAAAAATAATAA
1 TAA---TAAAAATAATAG
51516275 TAATAGAAAAAAATAATAG
1 TAAT----AAAAATAATAG
51516294 TAATAA
1 TAATAA
51516300 TATTAAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
15 19 0.41
18 13 0.28
19 14 0.30
ACGTcount: A:0.64, C:0.03, G:0.08, T:0.25
Consensus pattern (15 bp):
TAATAAAAATAATAG
Found at i:51516251 original size:56 final size:52
Alignment explanation
Indices: 51516191--51516297 Score: 126
Period size: 56 Copynumber: 2.0 Consensus size: 52
51516181 AAAAACATAA
* * *
51516191 AAAATAATAAT-ATGGTAAAAATTAGTAATAATTTGTTAATAAAAATAATAGTAATG
1 AAAATAATAATAACGGTAAAAA-TAATAATAA-TAG--AA-AAAAATAATAGTAATG
*
51516247 AAAATAATACTAACGGTAAAAATAATAATAATAGAAAAAAATAATAGTAAT
1 AAAATAATAATAACGGTAAAAATAATAATAATAGAAAAAAATAATAGTAAT
51516298 AATATTAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
52 15 0.33
53 2 0.04
55 2 0.04
56 18 0.39
57 9 0.20
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (52 bp):
AAAATAATAATAACGGTAAAAATAATAATAATAGAAAAAAATAATAGTAATG
Found at i:51516297 original size:22 final size:22
Alignment explanation
Indices: 51516267--51516315 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
51516257 TAACGGTAAA
51516267 AATAATAATAATAGAAAAAAAT
1 AATAATAATAATAGAAAAAAAT
* **
51516289 AATAGTAATAATATTAAAAAAT
1 AATAATAATAATAGAAAAAAAT
51516311 AATAA
1 AATAA
51516316 AAAAATAAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (22 bp):
AATAATAATAATAGAAAAAAAT
Found at i:51517423 original size:38 final size:37
Alignment explanation
Indices: 51517369--51517448 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 37
51517359 GTTAATTCTG
* *
51517369 TTGGGTTTGGGTATTGGGTTTTCATGGATTTAGGGAT
1 TTGGGTTTGGGTATTGGGTTGTAATGGATTTAGGGAT
* *
51517406 TTGGGTTTTTGGTATTGGGTTGTAATGGGTTTAGGGAT
1 TTGGG-TTTGGGTATTGGGTTGTAATGGATTTAGGGAT
51517444 TTGGG
1 TTGGG
51517449 GAGGTTGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
37 5 0.13
38 33 0.87
ACGTcount: A:0.12, C:0.01, G:0.40, T:0.46
Consensus pattern (37 bp):
TTGGGTTTGGGTATTGGGTTGTAATGGATTTAGGGAT
Found at i:51518448 original size:21 final size:21
Alignment explanation
Indices: 51518422--51518464 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
51518412 GGGACGATAG
* *
51518422 AGGCATAATGTTAGTGGCCTT
1 AGGCATAATGTCAATGGCCTT
*
51518443 AGGCATGATGTCAATGGCCTT
1 AGGCATAATGTCAATGGCCTT
51518464 A
1 A
51518465 CACTATTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (21 bp):
AGGCATAATGTCAATGGCCTT
Found at i:51520074 original size:42 final size:42
Alignment explanation
Indices: 51519984--51520074 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
51519974 TAGGTACAGA
* * * * * *
51519984 CTTCACACGATCGGGACACACGGCCGTTCTTGAGGTCGTGTC
1 CTTCACACGATCGAGACACACGCCCGTGCTTGAGGCCATATC
*
51520026 CCTCACACGA-CTGAGACACACGCCCGTGCTTGAGGCCATATC
1 CTTCACACGATC-GAGACACACGCCCGTGCTTGAGGCCATATC
51520068 CTTCACA
1 CTTCACA
51520075 TAGCTGAGGC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
41 1 0.03
42 39 0.98
ACGTcount: A:0.21, C:0.35, G:0.23, T:0.21
Consensus pattern (42 bp):
CTTCACACGATCGAGACACACGCCCGTGCTTGAGGCCATATC
Found at i:51533296 original size:28 final size:28
Alignment explanation
Indices: 51533228--51533493 Score: 428
Period size: 28 Copynumber: 9.5 Consensus size: 28
51533218 CATGAGATTG
* * *
51533228 GCACTAAGTGTGCGGGTTTAAAT-TGTACA
1 GCACTAAGTGTGCGAGTTTGATTATGT--A
*
51533257 GCACTAAGTGTGCGAGCTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
51533285 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
51533313 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
51533341 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
51533369 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
51533397 GCACTAAGTGCGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
51533425 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
51533453 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
51533480 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
51533494 GACTTAATAT
Statistics
Matches: 227, Mismatches: 9, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
27 24 0.11
28 181 0.80
29 19 0.08
30 3 0.01
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATGTA
Found at i:51544022 original size:28 final size:27
Alignment explanation
Indices: 51543965--51544116 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
51543955 TAAATTGTGC
*
51543965 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
51543992 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
51544020 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
51544047 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
51544075 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
51544102 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51544117 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:51544030 original size:55 final size:55
Alignment explanation
Indices: 51543965--51544116 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
51543955 TAAATTGTGC
*
51543965 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
51544020 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
51544075 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
51544117 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:51563861 original size:18 final size:18
Alignment explanation
Indices: 51563840--51563883 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
51563830 ATTCTGGTGA
51563840 TTCTAATAAAAGCAACAG
1 TTCTAATAAAAGCAACAG
**
51563858 TTCTGAAT-TGAGCAACAG
1 TTCT-AATAAAAGCAACAG
51563876 TTCTAATA
1 TTCTAATA
51563884 GAATCCCTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 3 0.14
18 16 0.73
19 3 0.14
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (18 bp):
TTCTAATAAAAGCAACAG
Found at i:51566087 original size:292 final size:292
Alignment explanation
Indices: 51565563--51566111 Score: 1098
Period size: 292 Copynumber: 1.9 Consensus size: 292
51565553 CAGTCTGCTG
51565563 CAAAATGAAATGTCGGAGCAATGTAGACCCGAAAACATATAAAAAGGAGAGGAAAAAGAATGAAA
1 CAAAATGAAATGTCGGAGCAATGTAGACCCGAAAACATATAAAAAGGAGAGGAAAAAGAATGAAA
51565628 AAACAACCTGTTGGTTACTTTGATCTTTTGAGGAAGTCACTGTTTGATTCTGTTGTTGCAATTGC
66 AAACAACCTGTTGGTTACTTTGATCTTTTGAGGAAGTCACTGTTTGATTCTGTTGTTGCAATTGC
51565693 GGCACATATGTAACGGAATGAGAACCTCCAAAAGTGTTGCCGTTCATCTGACCACGGTTTGGCCT
131 GGCACATATGTAACGGAATGAGAACCTCCAAAAGTGTTGCCGTTCATCTGACCACGGTTTGGCCT
51565758 GGTTTGTCTTGGAGCAGTAGGGAACTATCACATGGTATAGTAAGTACTCATATTCGTACAGTAGA
196 GGTTTGTCTTGGAGCAGTAGGGAACTATCACATGGTATAGTAAGTACTCATATTCGTACAGTAGA
51565823 CCCGAAAATGTCGGAGCAATGTAGGAGCTATC
261 CCCGAAAATGTCGGAGCAATGTAGGAGCTATC
51565855 CAAAATGAAATGTCGGAGCAATGTAGACCCGAAAACATATAAAAAGGAGAGGAAAAAGAATGAAA
1 CAAAATGAAATGTCGGAGCAATGTAGACCCGAAAACATATAAAAAGGAGAGGAAAAAGAATGAAA
51565920 AAACAACCTGTTGGTTACTTTGATCTTTTGAGGAAGTCACTGTTTGATTCTGTTGTTGCAATTGC
66 AAACAACCTGTTGGTTACTTTGATCTTTTGAGGAAGTCACTGTTTGATTCTGTTGTTGCAATTGC
51565985 GGCACATATGTAACGGAATGAGAACCTCCAAAAGTGTTGCCGTTCATCTGACCACGGTTTGGCCT
131 GGCACATATGTAACGGAATGAGAACCTCCAAAAGTGTTGCCGTTCATCTGACCACGGTTTGGCCT
51566050 GGTTTGTCTTGGAGCAGTAGGGAACTATCACATGGTATAGTAAGTACTCATATTCGTACAGT
196 GGTTTGTCTTGGAGCAGTAGGGAACTATCACATGGTATAGTAAGTACTCATATTCGTACAGT
51566112 TCGAACCGCT
Statistics
Matches: 257, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
292 257 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (292 bp):
CAAAATGAAATGTCGGAGCAATGTAGACCCGAAAACATATAAAAAGGAGAGGAAAAAGAATGAAA
AAACAACCTGTTGGTTACTTTGATCTTTTGAGGAAGTCACTGTTTGATTCTGTTGTTGCAATTGC
GGCACATATGTAACGGAATGAGAACCTCCAAAAGTGTTGCCGTTCATCTGACCACGGTTTGGCCT
GGTTTGTCTTGGAGCAGTAGGGAACTATCACATGGTATAGTAAGTACTCATATTCGTACAGTAGA
CCCGAAAATGTCGGAGCAATGTAGGAGCTATC
Found at i:51573764 original size:80 final size:79
Alignment explanation
Indices: 51573680--51573851 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
51573670 GGACTAAGAT
*
51573680 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
51573744 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
51573760 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
51573825 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
51573839 CCGAAGGCATTTG
1 CCGAAGGCATTTG
51573852 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:51573831 original size:39 final size:39
Alignment explanation
Indices: 51573627--51573849 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
51573617 TTGAATGCTG
* * * * *
51573627 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
51573667 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
51573706 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
51573747 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
51573787 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
51573826 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51573850 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:51573869 original size:79 final size:80
Alignment explanation
Indices: 51573707--51573884 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
51573697 AGATACAAAT
* * * *
51573707 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
51573772 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
51573787 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
51573851 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
51573866 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
51573885 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:51584930 original size:41 final size:41
Alignment explanation
Indices: 51584710--51584914 Score: 313
Period size: 41 Copynumber: 5.0 Consensus size: 41
51584700 ATCAGCGATA
*
51584710 TTCAGGCTT-TATGCCTAGCAGGCTTTATGCCGGTGAATTAT
1 TTCAGGCTTAT-TGCCTAGCAGGCTTTATGCCGGTGTATTAT
* * *
51584751 ATCAGGCTTATTTCCTAGCAGGCTTTATCCCGGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
51584792 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
*
51584833 TTCAGGCCTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
* * * *
51584874 TTCAGGCCTATTGCCTAGTAGGCTCTGTGCCGGTGTATTAT
1 TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
51584915 ACTAGGCTTT
Statistics
Matches: 152, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
41 151 0.99
42 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.38
Consensus pattern (41 bp):
TTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTAT
Found at i:51584942 original size:123 final size:123
Alignment explanation
Indices: 51584721--51584943 Score: 297
Period size: 123 Copynumber: 1.8 Consensus size: 123
51584711 TCAGGCTTTA
* * *
51584721 TGCCTAGCAGGCTTTATGCCGGTGAATTATATCAGGCTTATTTCCTAGCAGGCTTTATCCCGGTG
1 TGCCTAGCAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAGCAGGCTCTATCCCGGTG
* **
51584786 TATTATTTCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATTTCAGGCCTAT
66 TATTATCTCAGGCTTATTGCCTAGCAAACTTTATGCCGGTGTATTATTTCAGGCCTAT
* * * * *
51584844 TGCCTAGCAGGCTTTATGCCGGTGTATTATTTCAGGCCTATTGCCTAGTAGGCTCTGTGCCGGTG
1 TGCCTAGCAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAGCAGGCTCTATCCCGGTG
* *
51584909 TATTATACT-AGGCTT-TATGCCTGGCAAATTTTATG
66 TATTAT-CTCAGGCTTAT-TGCCTAGCAAACTTTATG
51584944 TGAGCAATGA
Statistics
Matches: 85, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 1 0.01
123 83 0.98
124 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (123 bp):
TGCCTAGCAGGCTTTATGCCGGTGAATTATATCAGGCCTATTGCCTAGCAGGCTCTATCCCGGTG
TATTATCTCAGGCTTATTGCCTAGCAAACTTTATGCCGGTGTATTATTTCAGGCCTAT
Found at i:51588993 original size:13 final size:13
Alignment explanation
Indices: 51588975--51588999 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51588965 CCGAAACTAG
51588975 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
51588988 AAAGAAAAAAAA
1 AAAGAAAAAAAA
51589000 TGCTCATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:51590179 original size:39 final size:40
Alignment explanation
Indices: 51590078--51590341 Score: 310
Period size: 40 Copynumber: 6.7 Consensus size: 40
51590068 TTGAATGATG
* *
51590078 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
51590117 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
51590158 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
51590197 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
51590236 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
51590276 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
51590315 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51590342 AACGAGGAGC
Statistics
Matches: 202, Mismatches: 14, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
39 75 0.37
40 114 0.56
41 12 0.06
42 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:51590359 original size:80 final size:77
Alignment explanation
Indices: 51590079--51590374 Score: 280
Period size: 80 Copynumber: 3.7 Consensus size: 77
51590069 TGAATGATGT
* * **
51590079 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAG-GACTA-ATCCGGGTTAAG-TCCCGAAGGCATT
*
51590142 TGTGCGAGA-TACTAATT
62 TGTGCGA-ATTACTAA-A
* *
51590159 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAA-TCCGGGTTAAGTCCCGAAGGCATTTG
*
51590222 TGCGAGTTACTAAA
64 TGCGAATTACTAAA
* * *
51590236 TCCGGGTTAAGTCCTGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACT-AATCCGGGTTAAGTCCCGAAGGCATTT
51590301 GTGCGAATTACTATAA
63 GTGCGAATTACTA-AA
* ** * *
51590317 CCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGA-CTA-ATCCGGGTTAAGTCCCGAAGG
51590375 TACGTGATTT
Statistics
Matches: 185, Mismatches: 20, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
78 34 0.18
79 73 0.39
80 76 0.41
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGACTAATCCGGGTTAAGTCCCGAAGGCATTTGTG
CGAATTACTAAA
Found at i:51593273 original size:29 final size:29
Alignment explanation
Indices: 51593207--51593326 Score: 118
Period size: 29 Copynumber: 4.2 Consensus size: 29
51593197 CACATACCTG
* * * *
51593207 TATATGGCCCACTAGACCC-AATTATATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * *
51593235 CACATGGCCCATTAGGCCCAAATCACGTT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
51593264 TATATGGCCCCTTTAGGCCCAAATCACATT
1 TATATGG-CCCATTAGGCCCAAATCACATT
* **
51593294 TATGTGGCCCATTAGATCCAAATCACA-T
1 TATATGGCCCATTAGGCCCAAATCACATT
51593322 TATAT
1 TATAT
51593327 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
28 20 0.27
29 28 0.38
30 26 0.35
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:51593282 original size:30 final size:30
Alignment explanation
Indices: 51593238--51593326 Score: 112
Period size: 30 Copynumber: 3.1 Consensus size: 30
51593228 TTATATTCAC
*
51593238 ATGG-CCCATTAGGCCCAAATCACGTTTAT
1 ATGGCCCCATTAGGCCCAAATCACATTTAT
*
51593267 ATGGCCCCTTTAGGCCCAAATCACATTTAT
1 ATGGCCCCATTAGGCCCAAATCACATTTAT
* **
51593297 GTGG-CCCATTAGATCCAAATCACA-TTAT
1 ATGGCCCCATTAGGCCCAAATCACATTTAT
51593325 AT
1 AT
51593327 TCATGCTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 5 0.10
29 21 0.40
30 26 0.50
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
ATGGCCCCATTAGGCCCAAATCACATTTAT
Found at i:51594536 original size:30 final size:29
Alignment explanation
Indices: 51594493--51594581 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
51594483 TTATATTCAC
51594493 ATGG-CCTATTAGGCCCAAATCACATTTAT
1 ATGGCCCT-TTAGGCCCAAATCACATTTAT
51594522 ATGGCCCCTTTAGGCCCAAATCACATTTAT
1 ATGG-CCCTTTAGGCCCAAATCACATTTAT
*
51594552 GTGGCCCTTTAGGCCCAAATCACA-TTAT
1 ATGGCCCTTTAGGCCCAAATCACATTTAT
51594580 AT
1 AT
51594582 TCATGCTCAC
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
28 5 0.09
29 24 0.43
30 24 0.43
31 3 0.05
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (29 bp):
ATGGCCCTTTAGGCCCAAATCACATTTAT
Found at i:51598896 original size:41 final size:41
Alignment explanation
Indices: 51598834--51598922 Score: 142
Period size: 41 Copynumber: 2.2 Consensus size: 41
51598824 CCTTGTTTTA
* *
51598834 TAATGAATCCAAACTATTATATAAAGGTTATTTTAATAATT
1 TAATAAATCCAAACTATTATATAAAGGTCATTTTAATAATT
* *
51598875 TAATAAATCCAAATTATTATATAAAGGTCATTTTGATAATT
1 TAATAAATCCAAACTATTATATAAAGGTCATTTTAATAATT
51598916 TAATAAA
1 TAATAAA
51598923 ATAATATAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (41 bp):
TAATAAATCCAAACTATTATATAAAGGTCATTTTAATAATT
Found at i:51601151 original size:50 final size:50
Alignment explanation
Indices: 51601094--51601197 Score: 199
Period size: 50 Copynumber: 2.1 Consensus size: 50
51601084 GTGAAGTATG
51601094 TGAAATTGAACGATATTGATTGATACAAGCACAATGGTAATTTGAAAGAT
1 TGAAATTGAACGATATTGATTGATACAAGCACAATGGTAATTTGAAAGAT
*
51601144 TGAAATTGAACGATATTTATTGATACAAGCACAATGGTAATTTGAAAGAT
1 TGAAATTGAACGATATTGATTGATACAAGCACAATGGTAATTTGAAAGAT
51601194 TGAA
1 TGAA
51601198 CACTGTTCCC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (50 bp):
TGAAATTGAACGATATTGATTGATACAAGCACAATGGTAATTTGAAAGAT
Found at i:51607584 original size:48 final size:49
Alignment explanation
Indices: 51607464--51607631 Score: 157
Period size: 49 Copynumber: 3.5 Consensus size: 49
51607454 TAAGTCAATA
* *
51607464 CCATGTCCCAAATAGGTCTTACACTAGCTTCCATATATCAAGGCCGATG
1 CCATGTCCCAAACAGGTCTTACACTGGCTTCCATATATCAAGGCCGATG
** * * * * *
51607513 CCATGTCCCAGCCAGGTCTTACACTGGCTTGCGTATCTCGAGGTCGATG
1 CCATGTCCCAAACAGGTCTTACACTGGCTTCCATATATCAAGGCCGATG
* ** *
51607562 -CATGTCCCAAACATGTCTTACACTGGC-TCTCATA-AT-GTGGCCAAT-
1 CCATGTCCCAAACAGGTCTTACACTGGCTTC-CATATATCAAGGCCGATG
* *
51607607 CCATGTCTCAAACATGTCTTACACT
1 CCATGTCCCAAACAGGTCTTACACT
51607632 AGCACACATA
Statistics
Matches: 98, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
46 29 0.30
47 2 0.02
48 27 0.28
49 40 0.41
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (49 bp):
CCATGTCCCAAACAGGTCTTACACTGGCTTCCATATATCAAGGCCGATG
Found at i:51614589 original size:17 final size:18
Alignment explanation
Indices: 51614567--51614600 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51614557 TACATTGAAG
51614567 TGTTTT-AGTGAAAACCA
1 TGTTTTCAGTGAAAACCA
*
51614584 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
51614601 CTTTTTAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCA
Done.