Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 154 of 284
Found at i:51615706 original size:29 final size:29
Alignment explanation
Indices: 51615640--51615758 Score: 120
Period size: 29 Copynumber: 4.2 Consensus size: 29
51615630 TACATACATG
*
51615640 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCATATT
*
51615668 CAAATGGCCCATCT-GGCCCAATTCATATT
1 CATATGGCCCA-CTAGGCCCAATTCATATT
* *
51615697 CTTATGGCCCACTAAGCCCAATTC-TCATT
1 CATATGGCCCACTAGGCCCAATTCAT-ATT
* * * *
51615726 CATATTGCCTATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAATTCATATT
51615755 -ATAT
1 CATAT
51615759 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 11, Indels: 10
0.78 0.11 0.10
Matches are distributed among these distances:
28 24 0.32
29 50 0.67
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.31
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:51615710 original size:57 final size:58
Alignment explanation
Indices: 51615642--51615754 Score: 149
Period size: 58 Copynumber: 2.0 Consensus size: 58
51615632 CATACATGCA
* * *
51615642 TATGGCCCACTAGGCCCAA-TCTTATTCAAATGGCCCATCT-GGCCCAATTCATATTCT
1 TATGGCCCACTAAGCCCAATTCTCATTCAAATGGCCCAT-TAGGCCCAAATCATATTCT
* * *
51615699 TATGGCCCACTAAGCCCAATTCTCATTCATATTGCCTATTAGGCCCAAATCATATT
1 TATGGCCCACTAAGCCCAATTCTCATTCAAATGGCCCATTAGGCCCAAATCATATT
51615755 ATATTCATGC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 19 0.40
58 29 0.60
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (58 bp):
TATGGCCCACTAAGCCCAATTCTCATTCAAATGGCCCATTAGGCCCAAATCATATTCT
Found at i:51619383 original size:13 final size:13
Alignment explanation
Indices: 51619365--51619391 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51619355 TGAAATTGTA
51619365 TCTAATTAAGGCT
1 TCTAATTAAGGCT
51619378 TCTAATTAAGGCT
1 TCTAATTAAGGCT
51619391 T
1 T
51619392 AGGAACTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TCTAATTAAGGCT
Found at i:51627485 original size:26 final size:26
Alignment explanation
Indices: 51627456--51627537 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
51627446 TTAGGTCACC
51627456 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
** * * *
51627482 TGTGTACCA-GATAGT-TAGG-T-CGCA
1 TGTGTAGTACTA-AGTGCAGGCTAC-TA
51627506 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
51627532 TGTGTA
1 TGTGTA
51627538 CTCGACAACT
Statistics
Matches: 40, Mismatches: 10, Indels: 12
0.65 0.16 0.19
Matches are distributed among these distances:
23 1 0.03
24 12 0.30
25 8 0.20
26 18 0.45
27 1 0.03
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGCAGGCTACTA
Found at i:51627515 original size:50 final size:50
Alignment explanation
Indices: 51627418--51627683 Score: 266
Period size: 50 Copynumber: 5.3 Consensus size: 50
51627408 GAGAACTATC
*** * *
51627418 TGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACCTGTGTAGTACTAAG
1 TGCAGGCTACTATGTGTACCAGATAG--TTAGGTCACATGTGTAGTACTAAG
*
51627470 TGCAGGCTACTATGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAAG
1 TGCAGGCTACTATGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAG
* * * * * *
51627520 TGCAGGCTACTATGTGTACTC-GACAACTTTGATCACGTGTGTAGTACTAAA
1 TGCAGGCTACTATGTGTAC-CAGA-TAGTTAGGTCACATGTGTAGTACTAAG
* * * * * * * *
51627571 TGTAGGCTACTACGTGTATCAGATGGTTAGTTTACGTGTGTTGTACTAAG
1 TGCAGGCTACTATGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAG
* * * *
51627621 TGCAGGCTACTACGTGTACCGGATTGTT-GGTCGCATGTGTAGTACTAAG
1 TGCAGGCTACTATGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAG
51627670 TGCAGGCTACTATG
1 TGCAGGCTACTATG
51627684 CATACTAGAC
Statistics
Matches: 177, Mismatches: 34, Indels: 9
0.80 0.15 0.04
Matches are distributed among these distances:
49 29 0.16
50 87 0.49
51 39 0.22
52 22 0.12
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (50 bp):
TGCAGGCTACTATGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAG
Found at i:51627594 original size:101 final size:101
Alignment explanation
Indices: 51627451--51627681 Score: 270
Period size: 101 Copynumber: 2.3 Consensus size: 101
51627441 TGGTTTTAGG
* * *
51627451 TCACCTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCGCATGTGTAGTAC
1 TCACCTGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
*
51627516 TAAGTGCAGGCTACTATGTGTACTCGACAACTTTGA
66 TAAGTGCAGGCTACTACGTGTACTCGACAACTTTGA
* * * * * * * *
51627552 TCACGTGTGTAGTACTAAATGTAGGCTACTACGTGTATCAGATGGTTAGTTTACGTGTGTTGTAC
1 TCACCTGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
* * *
51627617 TAAGTGCAGGCTACTACGTGTAC-CG--GATTGTTGG
66 TAAGTGCAGGCTACTACGTGTACTCGACAACT-TTGA
* * *
51627651 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACCTGTGTAGTACTAAATGCAGGCTACTA
51627682 TGCATACTAG
Statistics
Matches: 110, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
98 2 0.02
99 30 0.27
100 2 0.02
101 76 0.69
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (101 bp):
TCACCTGTGTAGTACTAAATGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACTCGACAACTTTGA
Found at i:51630359 original size:51 final size:51
Alignment explanation
Indices: 51630304--51630452 Score: 118
Period size: 43 Copynumber: 3.1 Consensus size: 51
51630294 CTACCACATA
* * *
51630304 ACATGTAA-CACATTCATAATGAACTTAGACCTCTCAACAAGCTCGGATGTT
1 ACATG-AATCACATCCATAATGAACTCAGACCACTCAACAAGCTCGGATGTT
* * * * *
51630355 ACATGAATCGCATCCATCATTAACTCGGACCACTCAACGAGCTCGGATG--
1 ACATGAATCACATCCATAATGAACTCAGACCACTCAACAAGCTCGGATGTT
* * * *
51630404 -C-----TCGCATCCATAATGAACTCGGACCTCTCAACAAGCTCGGATGCT
1 ACATGAATCACATCCATAATGAACTCAGACCACTCAACAAGCTCGGATGTT
51630449 ACAT
1 ACAT
51630453 ACCTCACGAA
Statistics
Matches: 80, Mismatches: 12, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
43 38 0.47
46 1 0.01
48 1 0.01
50 2 0.03
51 38 0.47
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (51 bp):
ACATGAATCACATCCATAATGAACTCAGACCACTCAACAAGCTCGGATGTT
Found at i:51630423 original size:43 final size:43
Alignment explanation
Indices: 51630362--51630448 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 43
51630352 GTTACATGAA
* * *
51630362 TCGCATCCATCATTAACTCGGACCACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGGACCACTCAACAAGCTCGGATGC
*
51630405 TCGCATCCATAATGAACTCGGACCTCTCAACAAGCTCGGATGC
1 TCGCATCCATAATGAACTCGGACCACTCAACAAGCTCGGATGC
51630448 T
1 T
51630449 ACATACCTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCGGACCACTCAACAAGCTCGGATGC
Found at i:51641296 original size:14 final size:15
Alignment explanation
Indices: 51641267--51641296 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51641257 TGGCTTGAAA
51641267 TGTGTTATTGATGCT
1 TGTGTTATTGATGCT
51641282 TGTGTTATT-ATGCT
1 TGTGTTATTGATGCT
51641296 T
1 T
51641297 TGAATTATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.13, C:0.07, G:0.23, T:0.57
Consensus pattern (15 bp):
TGTGTTATTGATGCT
Found at i:51641734 original size:13 final size:13
Alignment explanation
Indices: 51641716--51641740 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51641706 TTGAATTGTA
51641716 ATACCCCACACCC
1 ATACCCCACACCC
51641729 ATACCCCACACC
1 ATACCCCACACC
51641741 GGGATGAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.60, G:0.00, T:0.08
Consensus pattern (13 bp):
ATACCCCACACCC
Found at i:51642170 original size:24 final size:24
Alignment explanation
Indices: 51642137--51642185 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
51642127 TCCCTGGCTT
51642137 GTGTCCTTCACACGGCCATGACAC
1 GTGTCCTTCACACGGCCATGACAC
*
51642161 GTGTCTTTCACACGGCCATGACAC
1 GTGTCCTTCACACGGCCATGACAC
51642185 G
1 G
51642186 CCCGTGTCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.20, C:0.35, G:0.22, T:0.22
Consensus pattern (24 bp):
GTGTCCTTCACACGGCCATGACAC
Found at i:51643257 original size:46 final size:45
Alignment explanation
Indices: 51643155--51643324 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 45
51643145 ATAGGGTGAT
*
51643155 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCATCTCGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTTCATCTC-AA
** *
51643201 GTTGATG-CATGTCCCGGACATGTCTTACACTGGCTTACATCTCAA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCAA
* *
51643246 GGCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA
1 -GCCGATGCCATGTCCCAGACATGTCTTACACTGGCT-TCATCTCAA
*
51643292 TGCCGATGCCATGTCTCAGACATGTCTTACACT
1 -GCCGATGCCATGTCCCAGACATGTCTTACACT
51643325 AACTCACAAT
Statistics
Matches: 108, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
44 13 0.12
45 15 0.14
46 56 0.52
47 24 0.22
ACGTcount: A:0.21, C:0.31, G:0.20, T:0.28
Consensus pattern (45 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTTCATCTCAA
Found at i:51645811 original size:21 final size:22
Alignment explanation
Indices: 51645786--51645830 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
51645776 ATAATAAAAT
51645786 TTATA-AAT-ATTTT-AATTAG
1 TTATATAATCATTTTAAATTAG
*
51645805 TTATATAATCATTTTAAATTAT
1 TTATATAATCATTTTAAATTAG
51645827 TTAT
1 TTAT
51645831 TATATTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 5 0.23
20 3 0.14
21 5 0.23
22 9 0.41
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (22 bp):
TTATATAATCATTTTAAATTAG
Found at i:51651328 original size:36 final size:36
Alignment explanation
Indices: 51651268--51651342 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 36
51651258 GTTTAGGATT
* * * * *
51651268 TTTTTAAACTTTTTTAAGTTTATTATATATTATTTA
1 TTTTTAAAATTTTTTAAGTATATTAAATAATAATTA
51651304 TTTTTAATAATTTTTTAAG-ATATTAAATAATAATTA
1 TTTTTAA-AATTTTTTAAGTATATTAAATAATAATTA
51651340 TTT
1 TTT
51651343 AATTTGAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
36 23 0.70
37 10 0.30
ACGTcount: A:0.36, C:0.01, G:0.03, T:0.60
Consensus pattern (36 bp):
TTTTTAAAATTTTTTAAGTATATTAAATAATAATTA
Found at i:51651616 original size:12 final size:12
Alignment explanation
Indices: 51651599--51651638 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
51651589 AGAGGCTGAG
51651599 ACCACAACTTGT
1 ACCACAACTTGT
* *
51651611 ACCACAGCCTGT
1 ACCACAACTTGT
*
51651623 ATCACAACTTGT
1 ACCACAACTTGT
51651635 ACCA
1 ACCA
51651639 GAGGTTGAAC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.33, C:0.35, G:0.10, T:0.23
Consensus pattern (12 bp):
ACCACAACTTGT
Found at i:51656796 original size:40 final size:40
Alignment explanation
Indices: 51656752--51656944 Score: 273
Period size: 40 Copynumber: 4.8 Consensus size: 40
51656742 GGATATAGCT
* * * *
51656752 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATT-TAGTA
*
51656792 ACTCGCACAAATGCCTTCGGGACTTAACTCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
* * * *
51656832 ACTCACACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
51656871 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
*
51656911 ACTCGCACAAATGCCTTCGGGACCTAACCCGGAT
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
51656945 ATCATTCGAA
Statistics
Matches: 136, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
39 34 0.25
40 100 0.74
41 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
Found at i:51656873 original size:79 final size:80
Alignment explanation
Indices: 51656759--51656946 Score: 281
Period size: 79 Copynumber: 2.4 Consensus size: 80
51656749 GCTACTCGCT
* *
51656759 CAAATGCCTTCGGGACATAGCCCGGTTATAATAACTCGCACAAATGCCTTCGGGACTTAACTCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAACCCGG
51656824 ATTTAGTAACTCACA
66 ATTTAGTAACTCACA
* * *
51656839 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAATAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
51656902 GATTTAGTAACTCGCA
65 GATTTAGTAACTCACA
* *
51656918 CAAATGCCTTCGGGACCTAACCCGGATAT
1 CAAATGCCTTCGGGACATAGCCCGGATAT
51656947 CATTCGAATA
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 71 0.74
80 23 0.24
81 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCACA
Found at i:51682606 original size:27 final size:27
Alignment explanation
Indices: 51682576--51682753 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
51682566 TATTGAGCCT
* * * *
51682576 GCACACTCAGTGCTATATAATCATCTC
1 GCACACTTAGTGCTACATAGTCATATC
* * *
51682603 GCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACATAGTCATATC
*
51682630 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAGTCATA-TC
** *
51682658 GCACACTTAGTGCCGCATGGTCA-ATTC
1 GCACACTTAGTGCTACATAGTCATA-TC
* *
51682685 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAGTCATATC
*
51682712 GCACACTTAGTGCAACATAGTCATATC
1 GCACACTTAGTGCTACATAGTCATATC
51682739 GCACACTTAGTGCTA
1 GCACACTTAGTGCTA
51682754 TACAATTTAA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAGTCATATC
Found at i:51682714 original size:82 final size:81
Alignment explanation
Indices: 51682601--51682751 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
51682591 TATAATCATC
* *
51682601 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
51682666 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* ** *
51682683 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
51682747 AGTGC
65 AGTGC
51682752 TATACAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:51685891 original size:98 final size:98
Alignment explanation
Indices: 51685722--51685917 Score: 392
Period size: 98 Copynumber: 2.0 Consensus size: 98
51685712 AAATATGAAT
51685722 TGCTACCGAGTATCGGTTCCGATATTCCATGGAAGACGGCAATGTGAGATCGAGGAAAAAAGCCC
1 TGCTACCGAGTATCGGTTCCGATATTCCATGGAAGACGGCAATGTGAGATCGAGGAAAAAAGCCC
51685787 GTTTGAACCTTAGGAATAAATTAGGATACAAGA
66 GTTTGAACCTTAGGAATAAATTAGGATACAAGA
51685820 TGCTACCGAGTATCGGTTCCGATATTCCATGGAAGACGGCAATGTGAGATCGAGGAAAAAAGCCC
1 TGCTACCGAGTATCGGTTCCGATATTCCATGGAAGACGGCAATGTGAGATCGAGGAAAAAAGCCC
51685885 GTTTGAACCTTAGGAATAAATTAGGATACAAGA
66 GTTTGAACCTTAGGAATAAATTAGGATACAAGA
51685918 GACATGTCAC
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (98 bp):
TGCTACCGAGTATCGGTTCCGATATTCCATGGAAGACGGCAATGTGAGATCGAGGAAAAAAGCCC
GTTTGAACCTTAGGAATAAATTAGGATACAAGA
Found at i:51687568 original size:24 final size:23
Alignment explanation
Indices: 51687529--51687578 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 23
51687519 AAGCTCTATT
51687529 GAGCTGAAACGATAAGCT-TTGAC
1 GAGCTGAAACGATAAGCTCTT-AC
51687552 GAGCTGAAAAC-AGTAAGCTCTTAC
1 GAGCTG-AAACGA-TAAGCTCTTAC
51687576 GAG
1 GAG
51687579 GTGATACATC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 7 0.29
24 15 0.62
25 2 0.08
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (23 bp):
GAGCTGAAACGATAAGCTCTTAC
Found at i:51690842 original size:12 final size:13
Alignment explanation
Indices: 51690811--51690843 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
51690801 TTAGTTGGAG
51690811 AAAATATAATCTT
1 AAAATATAATCTT
51690824 AAAATATAATCTT
1 AAAATATAATCTT
51690837 -AAATATA
1 AAAATATA
51690844 GTTATTTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.35
13 13 0.65
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (13 bp):
AAAATATAATCTT
Found at i:51698489 original size:2 final size:2
Alignment explanation
Indices: 51698482--51698507 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
51698472 ATGAATATCC
51698482 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
51698508 TTTCCTCCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51705450 original size:105 final size:104
Alignment explanation
Indices: 51705284--51705490 Score: 264
Period size: 105 Copynumber: 2.0 Consensus size: 104
51705274 TTGTATATAT
*
51705284 ATACTATATATAAAGATTCTTATTGAATTTGTGTCACTCATAACCGGATCTTAACTAAGTTATTA
1 ATACTATATATAAAGATTCTTATTGAAGTTGTGTCACTCATAACCGGATCTTAACTAAGTTATTA
*
51705349 AATTACCAAA-ATACATTTATTTTAACAAAGCAATAAATCC
66 AATGA-CAAACATAC-TTTATTTTAACAAAGCAATAAATCC
*
51705389 ATACTATATATAAAGATT-TTAATT-AAGTTGATGTCA-TCCATAACC-GAGT-TTCAACTCAGT
1 ATACTATATATAAAGATTCTT-ATTGAAGTTG-TGTCACT-CATAACCGGA-TCTT-AACTAAGT
* *
51705449 TATTAAATGACAAACATTCTTTATTTTAACAAAGTAATAAAT
61 TATTAAATGACAAACATACTTTATTTTAACAAAGCAATAAAT
51705491 ATTAGTTTAA
Statistics
Matches: 91, Mismatches: 5, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
104 38 0.42
105 53 0.58
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (104 bp):
ATACTATATATAAAGATTCTTATTGAAGTTGTGTCACTCATAACCGGATCTTAACTAAGTTATTA
AATGACAAACATACTTTATTTTAACAAAGCAATAAATCC
Found at i:51705859 original size:18 final size:20
Alignment explanation
Indices: 51705808--51705859 Score: 56
Period size: 23 Copynumber: 2.6 Consensus size: 20
51705798 ATATGATGGG
51705808 TTTTTTT-ATTTAAAGTTATT
1 TTTTTTTAATTTAAAGTTA-T
51705828 TTTATTTATAATTTAAA-TTA-
1 TTT-TTT-TAATTTAAAGTTAT
51705848 TTTTTTTAATTT
1 TTTTTTTAATTT
51705860 CATTAATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
18 6 0.21
19 3 0.10
20 6 0.21
21 3 0.10
22 4 0.14
23 7 0.24
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTTTTAATTTAAAGTTAT
Found at i:51708822 original size:21 final size:21
Alignment explanation
Indices: 51708796--51708839 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
51708786 ATGCTAATAT
51708796 CTCTTTCGAGAGTAAGAGCAA
1 CTCTTTCGAGAGTAAGAGCAA
51708817 CTCTTTCGAGAGTAAGAGCAA
1 CTCTTTCGAGAGTAAGAGCAA
51708838 CT
1 CT
51708840 AACTCTAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (21 bp):
CTCTTTCGAGAGTAAGAGCAA
Found at i:51719079 original size:22 final size:22
Alignment explanation
Indices: 51719054--51719097 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
51719044 ATGGCATACA
51719054 AAGCCTTAGAGTTTGCATTGGC
1 AAGCCTTAGAGTTTGCATTGGC
51719076 AAGCCTTAGAGTTTGCATTGGC
1 AAGCCTTAGAGTTTGCATTGGC
51719098 TACTTTATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (22 bp):
AAGCCTTAGAGTTTGCATTGGC
Found at i:51723202 original size:78 final size:78
Alignment explanation
Indices: 51723114--51723426 Score: 608
Period size: 78 Copynumber: 4.0 Consensus size: 78
51723104 ATCAATTAAT
51723114 TTAATTCTATTTAAGAACTTCAATTATTTTATTAAATAATAATTCAAAAAAATTAAATTAATTCT
1 TTAATTCTATTTAAGAACTTCAATTATTTTATTAAATAATAATTCAAAAAAATTAAATTAATTCT
51723179 CAAGTCATTTTCA
66 CAAGTCATTTTCA
51723192 TTAATTCTATTTAAGAACTTCAATTATTTTATTAAATAATAATTCAAAAAAATTAAATTAATTCT
1 TTAATTCTATTTAAGAACTTCAATTATTTTATTAAATAATAATTCAAAAAAATTAAATTAATTCT
51723257 CAAGTCATTTTCA
66 CAAGTCATTTTCA
51723270 TTAATTCTATTTAAGAACTTCAATTATTTTATTAAATAATAATTCAAAAAAATTAAATTAATTCT
1 TTAATTCTATTTAAGAACTTCAATTATTTTATTAAATAATAATTCAAAAAAATTAAATTAATTCT
51723335 CAAGTCATTTTCA
66 CAAGTCATTTTCA
* *
51723348 TTAATTCTATTTAAGAACTTCAATTATTTTATTAAATAATAATCCAAAAAACTTAAATTAATTCT
1 TTAATTCTATTTAAGAACTTCAATTATTTTATTAAATAATAATTCAAAAAAATTAAATTAATTCT
51723413 CAAGTCATTTTCA
66 CAAGTCATTTTCA
51723426 T
1 T
51723427 ACTCAATAAG
Statistics
Matches: 233, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 233 1.00
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.43
Consensus pattern (78 bp):
TTAATTCTATTTAAGAACTTCAATTATTTTATTAAATAATAATTCAAAAAAATTAAATTAATTCT
CAAGTCATTTTCA
Found at i:51725536 original size:3 final size:3
Alignment explanation
Indices: 51725528--51725729 Score: 57
Period size: 3 Copynumber: 68.7 Consensus size: 3
51725518 ATTTTTAAAG
** **
51725528 TTA TTA TTA CCA TTA TTA TTA TTA TTA TTA CCA TT- TT- TTA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * * *
51725572 TTA TTA TT- TGTG TTA TTG TTG TTA TTA TTA TTC TTGA TTTA TCA TTA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT-A -TTA TTA TTA
* * * * ** *
51725619 ATA -CA CTA TTA TTC TTCA TT- TT- TTA -TA TTA TTA TTA TCC TTG
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * **
51725661 TTA ACA -TA TT- TTA TTA TT- TTAA TTA TTA TTT TCTA TTA TCG TTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA T-TA TTA TTA TTA
* *
51725705 TCA TTA ATA -TA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
51725730 CCTATTACTA
Statistics
Matches: 145, Mismatches: 38, Indels: 32
0.67 0.18 0.15
Matches are distributed among these distances:
2 19 0.13
3 113 0.78
4 11 0.08
5 2 0.01
ACGTcount: A:0.28, C:0.08, G:0.04, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:51729968 original size:42 final size:40
Alignment explanation
Indices: 51729921--51730076 Score: 105
Period size: 42 Copynumber: 3.9 Consensus size: 40
51729911 TACTGTACCA
*
51729921 ATGCCATATCCAAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCAA-ATATGGTCTTACACG-AATCTCGTATCG
* *
51729963 ATGCCAATAGTCCAACTATGATCTT--AC--A---C--ATCG
1 ATGCC-ATA-TCCAAATATGGTCTTACACGAATCTCGTATCG
* * *
51729996 ATGCCATATCCTAGATATGGTCTTATACGAAGTCTCATATCG
1 ATGCCATATCC-AAATATGGTCTTACACGAA-TCTCGTATCG
* *
51730038 ATGGCATATCTCAAATATGGTCTCACACGTAATCTCGTA
1 ATGCCATATC-CAAATATGGTCTTACACG-AATCTCGTA
51730077 ACCCTAATAT
Statistics
Matches: 88, Mismatches: 11, Indels: 30
0.68 0.09 0.23
Matches are distributed among these distances:
31 3 0.03
32 12 0.14
33 9 0.10
34 2 0.02
35 1 0.01
36 1 0.01
38 1 0.01
40 1 0.01
41 1 0.01
42 38 0.43
43 14 0.16
44 5 0.06
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.31
Consensus pattern (40 bp):
ATGCCATATCCAAATATGGTCTTACACGAATCTCGTATCG
Found at i:51742593 original size:23 final size:24
Alignment explanation
Indices: 51742555--51742601 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
51742545 AGTTCAAAAA
*
51742555 AAATATAAAAATTTCTCAAA-TTTT
1 AAATATAAAAAATTCT-AAACTTTT
51742579 AAATA-AAAAAATTCTAAACTTTT
1 AAATATAAAAAATTCTAAACTTTT
51742602 TTAATTTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 3 0.14
23 13 0.62
24 5 0.24
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (24 bp):
AAATATAAAAAATTCTAAACTTTT
Found at i:51744076 original size:20 final size:21
Alignment explanation
Indices: 51744030--51744077 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
51744020 ATTACCACTA
51744030 ATTATCTTAAATAATACAAAAT
1 ATTAT-TTAAATAATACAAAAT
*
51744052 A-TATTTATATAAT-CAAAAT
1 ATTATTTAAATAATACAAAAT
51744071 ATTATTT
1 ATTATTT
51744078 GCGCAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 7 0.29
20 13 0.54
21 3 0.12
22 1 0.04
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTATTTAAATAATACAAAAT
Found at i:51744341 original size:17 final size:18
Alignment explanation
Indices: 51744309--51744342 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51744299 AGAAGAGATG
51744309 ATAATCATATATTTAAAA
1 ATAATCATATATTTAAAA
*
51744327 ATAATTATA-ATTTAAA
1 ATAATCATATATTTAAA
51744343 TTACAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (18 bp):
ATAATCATATATTTAAAA
Found at i:51748785 original size:11 final size:11
Alignment explanation
Indices: 51748769--51748799 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
51748759 AAGTATGGGT
51748769 AGGTATGGGAA
1 AGGTATGGGAA
*
51748780 AGGTATGGGCA
1 AGGTATGGGAA
51748791 AGGTATGGG
1 AGGTATGGG
51748800 GTATGGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:51750838 original size:23 final size:23
Alignment explanation
Indices: 51750808--51750853 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
51750798 ATTCAATGAA
51750808 ACTTTATTTCACCCTGTCATGTG
1 ACTTTATTTCACCCTGTCATGTG
51750831 ACTTTATTTCACCCTGTCATGTG
1 ACTTTATTTCACCCTGTCATGTG
51750854 CGTTACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.26, G:0.13, T:0.43
Consensus pattern (23 bp):
ACTTTATTTCACCCTGTCATGTG
Found at i:51754114 original size:32 final size:32
Alignment explanation
Indices: 51754075--51754139 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
51754065 TTCGAGTTGT
51754075 TTTATTGACTATTCTATGACAGCTCACTCCTA
1 TTTATTGACTATTCTATGACAGCTCACTCCTA
*
51754107 TTTATTGACTATTCTATGATAGCTCACTCCTA
1 TTTATTGACTATTCTATGACAGCTCACTCCTA
51754139 T
1 T
51754140 CTTCTTATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.23, G:0.09, T:0.43
Consensus pattern (32 bp):
TTTATTGACTATTCTATGACAGCTCACTCCTA
Found at i:51756004 original size:24 final size:25
Alignment explanation
Indices: 51755957--51756005 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
51755947 ATTTACTAAT
* *
51755957 TTGGATCAAAAATCAAGTTCAGGTA
1 TTGGATCAAAAATAAACTTCAGGTA
*
51755982 TTGGATC-AAAATAAACTTTAGGTA
1 TTGGATCAAAAATAAACTTCAGGTA
51756006 CCAAATTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (25 bp):
TTGGATCAAAAATAAACTTCAGGTA
Found at i:51759128 original size:51 final size:51
Alignment explanation
Indices: 51759073--51759198 Score: 182
Period size: 51 Copynumber: 2.5 Consensus size: 51
51759063 TCTCAAACTT
* *
51759073 ACTTCATACTTCATCCGGAATTACTACCTTATTGCTCTAGCTTCAACAAGA
1 ACTTCATATTTCATCCGGAATAACTACCTTATTGCTCTAGCTTCAACAAGA
* * * *
51759124 ACTTCATATTTCATCCGAAATAATTACTTTATTGCTCTAGCTTCAATAAGA
1 ACTTCATATTTCATCCGGAATAACTACCTTATTGCTCTAGCTTCAACAAGA
*
51759175 GCTTCATATTTCATCCGG-ATAACT
1 ACTTCATATTTCATCCGGAATAACT
51759199 TGGTTCTATT
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 5 0.08
51 61 0.92
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.37
Consensus pattern (51 bp):
ACTTCATATTTCATCCGGAATAACTACCTTATTGCTCTAGCTTCAACAAGA
Found at i:51760476 original size:31 final size:31
Alignment explanation
Indices: 51760417--51760492 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 31
51760407 ACACATATAT
*
51760417 ATATACTAAATAAAATAATAAAATAATAATAA
1 ATAT-CTAATTAAAATAATAAAATAATAATAA
* *
51760449 ATATCTTATTAAAAT-ATTAAATAAATAATAA
1 ATATCTAATTAAAATAATAAAAT-AATAATAA
*
51760480 TTATCTAATTAAA
1 ATATCTAATTAAA
51760493 TAACTATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
30 6 0.16
31 28 0.74
32 4 0.11
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (31 bp):
ATATCTAATTAAAATAATAAAATAATAATAA
Found at i:51760482 original size:23 final size:23
Alignment explanation
Indices: 51760423--51760482 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
51760413 ATATATATAC
51760423 TAAAT-AA-AATAA-TAAAATAA
1 TAAATAAATAATAATTAAAATAA
* * *
51760443 T-AATAAATATCTTATTAAAATAT
1 TAAATAAATA-ATAATTAAAATAA
51760466 TAAATAAATAATAATTA
1 TAAATAAATAATAATTA
51760483 TCTAATTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.10
20 3 0.10
21 1 0.03
22 2 0.07
23 13 0.43
24 8 0.27
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
TAAATAAATAATAATTAAAATAA
Found at i:51783181 original size:781 final size:781
Alignment explanation
Indices: 51781679--51783223 Score: 2928
Period size: 781 Copynumber: 2.0 Consensus size: 781
51781669 TTAGAGGCCG
51781679 AAAGGTAATAATTGGTTAATCGGTAGCTAATCCACCCTAAAACCCTAATTCGAAGTTAGTTACAA
1 AAAGGTAATAATTGGTTAATCGGTAGCTAATCCACCCTAAAACCCTAATTCGAAGTTAGTTACAA
51781744 ACCTTGAAGCAAGTTAATATTCCTGTTTGTGTTATTAATTTAGTTCGTTTGTTTATTTTTCTTAA
66 ACCTTGAAGCAAGTTAATATTCCTGTTTGTGTTATTAATTTAGTTCGTTTGTTTATTTTTCTTAA
51781809 CTTATTTATTTATTTACAAACAAAGATCGTTATTTATTTATTTTTATCTCATTAACTTATTTAAT
131 CTTATTTATTTATTTACAAACAAAGATCGTTATTTATTTATTTTTATCTCATTAACTTATTTAAT
*
51781874 GGTTTATCATAATATAGGAATTAATTAGTACTATTTAGACTTATTATCATAAAAAGGTTTTCATA
196 GGTTTATCATAATATAGGAATTAATTAGTACTATTTAAACTTATTATCATAAAAAGGTTTTCATA
* * *
51781939 ATTTATTCTATCCTACCTTGGGTATGATTATCAGAATATTTCTAAAGTATTTTATTGTACTAAAC
261 ATTTATTCTATCCTACCTCGGGTACGATTATCAGAATATTTCTAAAGTATTTAATTGTACTAAAC
* *
51782004 TATATTGTAATTTCACCCATGCACTTGCGGGCATCGCTGTTCACAATTCCTATATTTTTTGTGTT
326 TATATTATAATTTCACCCATGCACTTGCGGACATCGCTGTTCACAATTCCTATATTTTTTGTGTT
*
51782069 ACATTTTTATTATAAATAACTAGGCGGTCAATAATAATTTATTAAATTCAATTACTAAGGGCTCA
391 ACATTTTTATTATAAATAACTAGGCGGTCAACAATAATTTATTAAATTCAATTACTAAGGGCTCA
51782134 TGGATCCATTCTTTTCACTTCTTTCATTTTTGGTAGTTCAAATTTCACTTAGGTGATTTACCAAC
456 TGGATCCATTCTTTTCACTTCTTTCATTTTTGGTAGTTCAAATTTCACTTAGGTGATTTACCAAC
51782199 ACGTGTTCAAGCAATTATACACATTTATACAATCATTTTAACTTTTTCAACAAGGATTTATAACC
521 ACGTGTTCAAGCAATTATACACATTTATACAATCATTTTAACTTTTTCAACAAGGATTTATAACC
*
51782264 ATCACTTGACAACACCACTAATAACACTTTATAAAATCATTATGTCACTCAACTATAAATATTGT
586 ATCACTTGACAACACCACTAACAACACTTTATAAAATCATTATGTCACTCAACTATAAATATTGT
* ** *
51782329 ACATGCAACACCCTATACCTGATTCGGTCGTTGGATCTGAGCTACGACATGTCACATTCATTTCT
651 AAATGCAACACCCTATACCTGACCCGGTCGTTAGATCTGAGCTACGACATGTCACATTCATTTCT
51782394 AGAATAACTACGATAAATTATATACACAATGCTACCATTTATACATGAAGCAAGTTAATTACAAA
716 AGAATAACTACGATAAATTATATACACAATGCTACCATTTATACATGAAGCAAGTTAATTACAAA
51782459 C
781 C
51782460 AAAGGTAATAATTGGTTAATCGGTAGCTAATCCACCCTAAAACCCTAATTCGAAGTTAGTTACAA
1 AAAGGTAATAATTGGTTAATCGGTAGCTAATCCACCCTAAAACCCTAATTCGAAGTTAGTTACAA
51782525 ACCTTGAAGCAAGTTAATATTCCTGTTTGTGTTATTAATTTAGTTCGTTTGTTTATTTTTCTTAA
66 ACCTTGAAGCAAGTTAATATTCCTGTTTGTGTTATTAATTTAGTTCGTTTGTTTATTTTTCTTAA
51782590 CTTATTTATTTATTTACAAACAAAGATCGTTATTTATTTATTTTTATCTCATTAACTTATTTAAT
131 CTTATTTATTTATTTACAAACAAAGATCGTTATTTATTTATTTTTATCTCATTAACTTATTTAAT
*
51782655 GGTTTATCGTAATATAGGAATTAATTAGTACTATTTAAACTTATTATCATAAAAAGGTTTTCATA
196 GGTTTATCATAATATAGGAATTAATTAGTACTATTTAAACTTATTATCATAAAAAGGTTTTCATA
51782720 ATTTATTCTATCCTACCTCGGGTACGATTATCAGAATATTTCTAAAGTATTTAATTGTACTAAAC
261 ATTTATTCTATCCTACCTCGGGTACGATTATCAGAATATTTCTAAAGTATTTAATTGTACTAAAC
51782785 TATATTATAATTTCACCCATGCACTTGCGGACATCGCTGTTCACAATTCCTATATTTTTTGTGTT
326 TATATTATAATTTCACCCATGCACTTGCGGACATCGCTGTTCACAATTCCTATATTTTTTGTGTT
51782850 ACATTTTTATTATAAATAACTAGGCGGTCAACAATAATTTATTAAATTCAATTACTAAGGGCTCA
391 ACATTTTTATTATAAATAACTAGGCGGTCAACAATAATTTATTAAATTCAATTACTAAGGGCTCA
*
51782915 TGGATCCATTCTTTTCACTTCTTTCATTTTTGGTAGTTCACATTTCACTTAGGTGATTTACCAAC
456 TGGATCCATTCTTTTCACTTCTTTCATTTTTGGTAGTTCAAATTTCACTTAGGTGATTTACCAAC
*
51782980 ACGTGTTTAAGCAATTATACACATTTATACAATCATTTTAACTTTTTCAACAAGGATTTATAACC
521 ACGTGTTCAAGCAATTATACACATTTATACAATCATTTTAACTTTTTCAACAAGGATTTATAACC
*
51783045 ATCACTTGACAACACCACTAACAACACTTTATAAAATCATTATGTCGCTCAACTATAAATATTGT
586 ATCACTTGACAACACCACTAACAACACTTTATAAAATCATTATGTCACTCAACTATAAATATTGT
*
51783110 AAATGCAACACCCTATACCTGACCCGGTCGTTAGATCTGAGCTACGACATGTCACATTTATTTCT
651 AAATGCAACACCCTATACCTGACCCGGTCGTTAGATCTGAGCTACGACATGTCACATTCATTTCT
*
51783175 AGAATAACTACGATAAATTATATACATAATGCTACCATTTATACATGAA
716 AGAATAACTACGATAAATTATATACACAATGCTACCATTTATACATGAA
51783224 AATAAGTTTA
Statistics
Matches: 746, Mismatches: 18, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
781 746 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (781 bp):
AAAGGTAATAATTGGTTAATCGGTAGCTAATCCACCCTAAAACCCTAATTCGAAGTTAGTTACAA
ACCTTGAAGCAAGTTAATATTCCTGTTTGTGTTATTAATTTAGTTCGTTTGTTTATTTTTCTTAA
CTTATTTATTTATTTACAAACAAAGATCGTTATTTATTTATTTTTATCTCATTAACTTATTTAAT
GGTTTATCATAATATAGGAATTAATTAGTACTATTTAAACTTATTATCATAAAAAGGTTTTCATA
ATTTATTCTATCCTACCTCGGGTACGATTATCAGAATATTTCTAAAGTATTTAATTGTACTAAAC
TATATTATAATTTCACCCATGCACTTGCGGACATCGCTGTTCACAATTCCTATATTTTTTGTGTT
ACATTTTTATTATAAATAACTAGGCGGTCAACAATAATTTATTAAATTCAATTACTAAGGGCTCA
TGGATCCATTCTTTTCACTTCTTTCATTTTTGGTAGTTCAAATTTCACTTAGGTGATTTACCAAC
ACGTGTTCAAGCAATTATACACATTTATACAATCATTTTAACTTTTTCAACAAGGATTTATAACC
ATCACTTGACAACACCACTAACAACACTTTATAAAATCATTATGTCACTCAACTATAAATATTGT
AAATGCAACACCCTATACCTGACCCGGTCGTTAGATCTGAGCTACGACATGTCACATTCATTTCT
AGAATAACTACGATAAATTATATACACAATGCTACCATTTATACATGAAGCAAGTTAATTACAAA
C
Found at i:51790425 original size:26 final size:26
Alignment explanation
Indices: 51790396--51790499 Score: 172
Period size: 26 Copynumber: 4.0 Consensus size: 26
51790386 ATTCCCATCT
*
51790396 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
51790422 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
51790448 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
*
51790474 TGGAATATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
51790500 ATTTGTACCA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.34
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:51793100 original size:79 final size:81
Alignment explanation
Indices: 51792964--51793146 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
51792954 TCGAATGATG
* *
51792964 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
51793028 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
51793043 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
51793105 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
51793123 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
51793147 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:51793162 original size:40 final size:40
Alignment explanation
Indices: 51792965--51793148 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
51792955 CGAATGATGT
* * * *
51792965 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
51793005 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
51793045 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51793083 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51793124 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51793149 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:51793170 original size:79 final size:79
Alignment explanation
Indices: 51793017--51793181 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
51793007 GGACTAAGAT
* **
51793017 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
51793082 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
51793096 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
51793159 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
51793175 CCGAAGG
1 CCGAAGG
51793182 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:51802685 original size:93 final size:93
Alignment explanation
Indices: 51802573--51802744 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
51802563 GCCCATAAGT
* * *
51802573 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
51802638 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
51802666 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
51802731 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
51802745 CAAACATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:51802740 original size:46 final size:46
Alignment explanation
Indices: 51802565--51802740 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
51802555 TGTAACCCGC
* *
51802565 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
51802611 CCATAAGTGAACTTGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
51802657 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
51802704 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
51802741 TGCCCAAACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 31 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:51804643 original size:29 final size:29
Alignment explanation
Indices: 51804606--51804684 Score: 77
Period size: 35 Copynumber: 2.5 Consensus size: 29
51804596 GATTTATTGA
* *
51804606 TATTTTAATTCGCATGTTGAGCATGTTAT
1 TATTCTAATTCGCATGTTAAGCATGTTAT
51804635 TATTCTAATTATGATTCGCATGTTAAGCATGTTAT
1 TATTC----TA--ATTCGCATGTTAAGCATGTTAT
*
51804670 TATTCTGATTCGCAT
1 TATTCTAATTCGCAT
51804685 ATCAAACATG
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
29 12 0.29
31 1 0.02
33 2 0.05
35 26 0.63
ACGTcount: A:0.25, C:0.13, G:0.15, T:0.47
Consensus pattern (29 bp):
TATTCTAATTCGCATGTTAAGCATGTTAT
Found at i:51812558 original size:46 final size:46
Alignment explanation
Indices: 51812483--51812649 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 46
51812473 TGTAACCCGC
* *
51812483 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* * *
51812529 CCATGAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * * * *
51812579 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
*
51812622 CCATAAGTGAACTCGAACTCAACTCAAC
1 CCATAAGTGAACTCGGACTCAACTCAAC
51812650 AAGTTCGGAT
Statistics
Matches: 99, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 53 0.54
47 26 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:51812603 original size:93 final size:93
Alignment explanation
Indices: 51812490--51812661 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
51812480 CGCCCATAAG
* * * * *
51812490 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTTGCATCCATAAGTGAACTCGAACTCAACTCA
*
51812555 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACAAGCTCGGATGCCTAGTTACATCTCA
*
51812583 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTTGCATCCATAAGTGAACTCGAACTCAACTCA
*
51812648 ACAAGTTCGGATGC
66 ACAAGCTCGGATGC
51812662 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTTGCATCCATAAGTGAACTCGAACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCA
Found at i:51815084 original size:15 final size:15
Alignment explanation
Indices: 51815058--51815113 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
51815048 CAAGGAAACC
51815058 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
51815073 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
51815088 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
51815103 GAATAAAGAAA
1 GAATAAAGAAA
51815114 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:51818162 original size:47 final size:47
Alignment explanation
Indices: 51818097--51818597 Score: 911
Period size: 47 Copynumber: 10.7 Consensus size: 47
51818087 ATCCATGAGT
51818097 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
51818144 GAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA-C
51818190 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
51818237 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
51818284 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
51818331 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
51818378 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
51818425 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
51818472 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
51818519 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
51818566 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
51818598 TCAACCATCC
Statistics
Matches: 439, Mismatches: 8, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
43 6 0.01
44 2 0.00
45 2 0.00
46 29 0.07
47 390 0.89
48 2 0.00
49 2 0.00
50 6 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:51819774 original size:47 final size:47
Alignment explanation
Indices: 51819720--51819812 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
51819710 GATTTAGTCT
51819720 CTAATTTCAATTTAAGCACTTTATGCATAAAATTTCTTCACGAAATC
1 CTAATTTCAATTTAAGCACTTTATGCATAAAATTTCTTCACGAAATC
*
51819767 CTAATTTCAATTTAAGTACTTTATGCATAAAATTTCTTCACGAAAT
1 CTAATTTCAATTTAAGCACTTTATGCATAAAATTTCTTCACGAAAT
51819813 TTTCACACAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.37, C:0.17, G:0.06, T:0.40
Consensus pattern (47 bp):
CTAATTTCAATTTAAGCACTTTATGCATAAAATTTCTTCACGAAATC
Found at i:51825827 original size:29 final size:29
Alignment explanation
Indices: 51825764--51825828 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
51825754 AAAATTCATA
* * * *
51825764 ATTAACATTGAATAATTACCTAAAATTGC
1 ATTAAGATTAAATAATCACCTAAAATTAC
51825793 ATTAAGATTAAATAATCACCTAAAATTAC
1 ATTAAGATTAAATAATCACCTAAAATTAC
51825822 ATTAAGA
1 ATTAAGA
51825829 ATGCGATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.49, C:0.12, G:0.06, T:0.32
Consensus pattern (29 bp):
ATTAAGATTAAATAATCACCTAAAATTAC
Found at i:51827785 original size:47 final size:45
Alignment explanation
Indices: 51827619--51827981 Score: 207
Period size: 47 Copynumber: 7.8 Consensus size: 45
51827609 GGGATATATT
* * * *
51827619 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCAT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCT--GTAG
* * * * * *
51827669 GCTGTTGCATGTCCCAAACATGTCTTACACTAGCAAAACTCT-TA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTGTAG
* * *
51827713 GCCGATGCGTGCCCCAGACACGTCTTACACTGGCTATCTCTGTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTG-T-AG
* * *
51827760 GCCAATGCATGTCCTAGACATGTCTTACATTGGCAGTCATCTCTGT--
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC--T-ATCTCTGTAG
* *
51827806 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT-GGTATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTGTA-G
* * ** * *
51827854 GCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTGGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATC-TCTGTAG
* * * * *
51827900 GCCGATGCTATCTCCCAAACATGGACTTACACTGGCTCTCATAATGT-G
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCTATC-T-CTGTAG
* * **
51827948 GCCGAAGCATGTCCCAAACACATCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
51827982 GCACAAATCA
Statistics
Matches: 244, Mismatches: 51, Indels: 40
0.73 0.15 0.12
Matches are distributed among these distances:
43 5 0.02
44 27 0.11
45 7 0.03
46 43 0.18
47 79 0.32
48 53 0.22
49 18 0.07
50 12 0.05
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTAG
Found at i:51827903 original size:94 final size:92
Alignment explanation
Indices: 51827618--51827978 Score: 293
Period size: 94 Copynumber: 3.9 Consensus size: 92
51827608 TGGGATATAT
* * * *
51827618 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATACGCATGCTGTTGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATATG---GCCGATGCATGTC
* *
51827682 CCAAACATGTCTTACACTAGCAAAACTCTTA
63 CCAAACATGTCTTACACTAGC-AATCTCTGA
* * * * * *
51827713 -GCCGATG-CGTGCCCCAGACA-CGTCTTACACTGGCTATCTCTGTTGA-GGCCAATGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATC-ATGAT-ATGGCCGATGCATGTCC
* * * *
51827774 TAGACATGTCTTACATTGGCAGTCATCTCTG-
64 CAAACATGTCTTACACTAGCA---ATCTCTGA
* * *
51827805 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATGGTATGGCTGATGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATATGGCCGATGCATGTCCCA
* **
51827870 GACATGTCTTACACTAGCCCTCGTCTGGA
66 AACATGTCTTACACTAGCAATC-TCT-GA
* * * * * * * *
51827899 TGCCGATGCTATCTCCCAAACATGGACTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATATGGCCGATGCATGTCCCA
**
51827964 AACACATCTTACACT
66 AACATGTCTTACACT
51827979 GGCGCACAAA
Statistics
Matches: 211, Mismatches: 42, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
90 1 0.00
91 29 0.14
92 19 0.09
93 26 0.12
94 119 0.56
95 17 0.08
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (92 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATGATATGGCCGATGCATGTCCCA
AACATGTCTTACACTAGCAATCTCTGA
Found at i:51830399 original size:22 final size:22
Alignment explanation
Indices: 51830374--51830416 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
51830364 TACACACGCA
*
51830374 AATATTTTTTAAAAAATATTTT
1 AATATTATTTAAAAAATATTTT
*
51830396 AATATTATTTAAAATATATTT
1 AATATTATTTAAAAAATATTT
51830417 AATTATCACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
AATATTATTTAAAAAATATTTT
Found at i:51833472 original size:13 final size:13
Alignment explanation
Indices: 51833444--51833481 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
51833434 GTTTTGTTAT
51833444 TAATCTATTATT-A
1 TAAT-TATTATTAA
51833457 TAATTATTATTAA
1 TAATTATTATTAA
51833470 TAATTATTATTA
1 TAATTATTATTA
51833482 TGGTTTTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 7 0.29
13 17 0.71
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (13 bp):
TAATTATTATTAA
Found at i:51833766 original size:18 final size:18
Alignment explanation
Indices: 51833743--51833781 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
51833733 TATATGTACA
*
51833743 ATTTTTATATATG-TATTT
1 ATTTTTAAATA-GATATTT
51833761 ATTTTTAAATAGATATTT
1 ATTTTTAAATAGATATTT
51833779 ATT
1 ATT
51833782 ATAATTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
ATTTTTAAATAGATATTT
Found at i:51833791 original size:3 final size:3
Alignment explanation
Indices: 51833777--51833843 Score: 70
Period size: 3 Copynumber: 23.0 Consensus size: 3
51833767 AAATAGATAT
* *
51833777 TTA TTA TAA TTA TTA -TA GTT- TTA -TA TTA -AA TTA TTAA TTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT-A TTA TTA
51833820 TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA
51833844 AAATAAATTA
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
2 7 0.13
3 43 0.80
4 4 0.07
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:51833981 original size:3 final size:3
Alignment explanation
Indices: 51833973--51834021 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
51833963 ATGAATTAAA
* *
51833973 TAT TAT TA- TAT TA- TAT TAT TAT TAT AAT GTAT TAT TAT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
51834017 TAT TA
1 TAT TA
51834022 ACTAATATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.85
4 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:51833990 original size:13 final size:13
Alignment explanation
Indices: 51833972--51834021 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 13
51833962 TATGAATTAA
51833972 ATATTATTATATT
1 ATATTATTATATT
51833985 ATATTA-T-TATT
1 ATATTATTATATT
51833996 ATAATGTATTATTATT
1 AT-AT-TATTA-TATT
51834012 AATATTATTA
1 -ATATTATTA
51834022 ACTAATATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
11 6 0.19
12 3 0.10
13 8 0.26
14 1 0.03
15 5 0.16
16 6 0.19
17 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (13 bp):
ATATTATTATATT
Found at i:51833994 original size:16 final size:16
Alignment explanation
Indices: 51833973--51834019 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
51833963 ATGAATTAAA
51833973 TATTATTATATTATAT
1 TATTATTATATTATAT
* *
51833989 TATTATTATAATGTAT
1 TATTATTATATTATAT
51834005 TATTATTAATATTAT
1 TATTATT-ATATTAT
51834020 TAACTAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
16 21 0.81
17 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TATTATTATATTATAT
Found at i:51833997 original size:19 final size:21
Alignment explanation
Indices: 51833973--51834019 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
51833963 ATGAATTAAA
51833973 TATTATTATAT-TA-TATTAT
1 TATTATTATATGTATTATTAT
51833992 TATTA-TA-ATGTATTATTAT
1 TATTATTATATGTATTATTAT
*
51834011 TAATATTAT
1 TATTATTAT
51834020 TAACTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
17 2 0.09
18 4 0.17
19 15 0.65
20 2 0.09
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TATTATTATATGTATTATTAT
Found at i:51839428 original size:23 final size:23
Alignment explanation
Indices: 51839402--51839457 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
51839392 TTGTTTCGTA
*
51839402 TACTTAGTTAAATTTAATTTAAG
1 TACTTAGTAAAATTTAATTTAAG
51839425 TACTTAGTAAAATTTAATTTAAG
1 TACTTAGTAAAATTTAATTTAAG
51839448 TACTTAGTAA
1 TACTTAGTAA
51839458 CTCAATTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (23 bp):
TACTTAGTAAAATTTAATTTAAG
Found at i:51842149 original size:13 final size:13
Alignment explanation
Indices: 51842131--51842157 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51842121 ATTTTCTTCA
51842131 TCACATCACATGT
1 TCACATCACATGT
51842144 TCACATCACATGT
1 TCACATCACATGT
51842157 T
1 T
51842158 TTATTATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (13 bp):
TCACATCACATGT
Found at i:51844063 original size:39 final size:40
Alignment explanation
Indices: 51844018--51844101 Score: 116
Period size: 39 Copynumber: 2.1 Consensus size: 40
51844008 GAAAAATGAT
* *
51844018 GCTAAAGAACGAGTATTAGCGGCACTTTTCA-AAAACGTC
1 GCTAAAGAACAAGTATTAGCGGCACTTTTCAGAAAACGCC
* * *
51844057 GCTAAAGATCAAGTATTAGCGGCGCTTTTTAGAAAACGCC
1 GCTAAAGAACAAGTATTAGCGGCACTTTTCAGAAAACGCC
51844097 GCTAA
1 GCTAA
51844102 TGCTTGATCT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 27 0.69
40 12 0.31
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (40 bp):
GCTAAAGAACAAGTATTAGCGGCACTTTTCAGAAAACGCC
Found at i:51844620 original size:15 final size:14
Alignment explanation
Indices: 51844600--51844640 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
51844590 ACTATTTTAA
51844600 GGTTTATGGGTTAT
1 GGTTTATGGGTTAT
*
51844614 GGGTTTATGGATTAT
1 -GGTTTATGGGTTAT
*
51844629 GGTTTAAGGGTT
1 GGTTTATGGGTT
51844641 GGGGTTTAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (14 bp):
GGTTTATGGGTTAT
Found at i:51844730 original size:22 final size:21
Alignment explanation
Indices: 51844539--51844748 Score: 97
Period size: 22 Copynumber: 9.8 Consensus size: 21
51844529 TTAATTATCA
* *
51844539 TTATAGTTTAGGGTTTACGGT
1 TTATGGTTTAGGGTTTAAGGT
* * *
51844560 ATATGGTTAAGGGTTTAATGT
1 TTATGGTTTAGGGTTTAAGGT
*
51844581 TTATGAGTTACTA--TTTTAAGGT
1 TTATG-GTT--TAGGGTTTAAGGT
* * *
51844603 TTATGGGTTATGGGTTTATGGA
1 TTATGGTTTA-GGGTTTAAGGT
**
51844625 TTATGGTTTAAGGG-TTGGGGT
1 TTATGGTTT-AGGGTTTAAGGT
*
51844646 TTAAGGTTTA-GGTGTTAGAGGT
1 TTATGGTTTAGGGT-TTA-AGGT
* * ** *
51844668 TAAGGGTTGGGGGTTTAGGGT
1 TTATGGTTTAGGGTTTAAGGT
* * * *
51844689 TCAAGGTTTA-TGTTTTAGGAT
1 TTATGGTTTAGGGTTTAAGG-T
*
51844710 TTATGGTTTAGGGTTTAAGGA
1 TTATGGTTTAGGGTTTAAGGT
*
51844731 TTAGGAGTTTAGGGTTTA
1 TTATG-GTTTAGGGTTTA
51844749 GATTAATTAG
Statistics
Matches: 137, Mismatches: 38, Indels: 27
0.68 0.19 0.13
Matches are distributed among these distances:
19 4 0.03
20 7 0.05
21 58 0.42
22 63 0.46
23 4 0.03
24 1 0.01
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.44
Consensus pattern (21 bp):
TTATGGTTTAGGGTTTAAGGT
Found at i:51844749 original size:7 final size:7
Alignment explanation
Indices: 51844595--51844749 Score: 82
Period size: 7 Copynumber: 21.7 Consensus size: 7
51844585 GAGTTACTAT
*
51844595 TTTAAGG
1 TTTAGGG
51844602 TTTATGGG
1 TTTA-GGG
51844610 -TTATGGG
1 TTTA-GGG
*
51844617 TTTATGG
1 TTTAGGG
* *
51844624 ATTATGG
1 TTTAGGG
51844631 TTTAAGGG
1 TTT-AGGG
*
51844639 -TTGGGG
1 TTTAGGG
*
51844645 TTTAAGG
1 TTTAGGG
51844652 TTTA-GG
1 TTTAGGG
51844658 TGTTAGAGG
1 T-TTAG-GG
*
51844667 TTAAGGG
1 TTTAGGG
**
51844674 TTGGGGG
1 TTTAGGG
51844681 TTTAGGG
1 TTTAGGG
* *
51844688 TTCAAGG
1 TTTAGGG
* *
51844695 TTTATGT
1 TTTAGGG
*
51844702 TTTAGGA
1 TTTAGGG
*
51844709 TTTATGG
1 TTTAGGG
51844716 TTTAGGG
1 TTTAGGG
*
51844723 TTTAAGG
1 TTTAGGG
*
51844730 ATTAGGAG
1 TTTAGG-G
51844738 TTTAGGG
1 TTTAGGG
51844745 TTTAG
1 TTTAG
51844750 ATTAATTAGT
Statistics
Matches: 113, Mismatches: 27, Indels: 16
0.72 0.17 0.10
Matches are distributed among these distances:
6 6 0.05
7 87 0.77
8 17 0.15
9 3 0.03
ACGTcount: A:0.20, C:0.01, G:0.37, T:0.43
Consensus pattern (7 bp):
TTTAGGG
Found at i:51844865 original size:14 final size:14
Alignment explanation
Indices: 51844846--51844872 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51844836 TAATTGTCAT
51844846 TATGGTTTAGGGTA
1 TATGGTTTAGGGTA
51844860 TATGGTTTAGGGT
1 TATGGTTTAGGGT
51844873 TTAAAGTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (14 bp):
TATGGTTTAGGGTA
Found at i:51844927 original size:21 final size:21
Alignment explanation
Indices: 51844893--51844944 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
51844883 GAGTTGTTAT
*
51844893 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGGTTATGGATTAT-GG
*
51844915 TTT-AGGGTTATGGTTTATGG
1 TTTAAGGGTTATGGATTATGG
51844935 TTTAAGGGTT
1 TTTAAGGGTT
51844945 GGGGTTTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 5 0.19
21 19 0.70
22 3 0.11
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (21 bp):
TTTAAGGGTTATGGATTATGG
Found at i:51844950 original size:21 final size:21
Alignment explanation
Indices: 51844908--51844972 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
51844898 GGTTTATGGA
**
51844908 TTATGGGTTT-AGGGTTATGGT
1 TTAT-GGTTTAAGGGTTGGGGT
51844929 TTATGGTTTAAGGGTTGGGGT
1 TTATGGTTTAAGGGTTGGGGT
* * *
51844950 TTAAGGCTTAGGGGTTAGGGGT
1 TTATGGTTTAAGGGTT-GGGGT
51844972 T
1 T
51844973 AAGTGTTAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
20 5 0.14
21 26 0.70
22 6 0.16
ACGTcount: A:0.15, C:0.02, G:0.42, T:0.42
Consensus pattern (21 bp):
TTATGGTTTAAGGGTTGGGGT
Found at i:51844952 original size:14 final size:15
Alignment explanation
Indices: 51844933--51844965 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
51844923 TATGGTTTAT
*
51844933 GGTTTAAGGGTT-GG
1 GGTTTAAGGCTTAGG
51844947 GGTTTAAGGCTTAGG
1 GGTTTAAGGCTTAGG
51844962 GGTT
1 GGTT
51844966 AGGGGTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.15, C:0.03, G:0.45, T:0.36
Consensus pattern (15 bp):
GGTTTAAGGCTTAGG
Found at i:51845951 original size:41 final size:41
Alignment explanation
Indices: 51845886--51845993 Score: 117
Period size: 41 Copynumber: 2.6 Consensus size: 41
51845876 AAAAAAAATT
* * * * *
51845886 AAAATTAAGCAATAGTGGCTTTTTTTCCAAAAATGCCACAA
1 AAAATTAAACTATAGTGGCGTTTTTACCAAAAAGGCCACAA
* * ** **
51845927 GAAATTAAACTATAGTGACGTTTTTAGTAAAAAGGCTGCAA
1 AAAATTAAACTATAGTGGCGTTTTTACCAAAAAGGCCACAA
51845968 AAAATTAAACTATAGTGGCGTTTTTA
1 AAAATTAAACTATAGTGGCGTTTTTA
51845994 TTGAAAACGC
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (41 bp):
AAAATTAAACTATAGTGGCGTTTTTACCAAAAAGGCCACAA
Found at i:51846009 original size:41 final size:41
Alignment explanation
Indices: 51845914--51846010 Score: 122
Period size: 41 Copynumber: 2.4 Consensus size: 41
51845904 CTTTTTTTCC
* * *
51845914 AAAAATGCCACAAGAAATTAAACTATAGTGACGTTTTTAGT
1 AAAAACGCCGCAAAAAATTAAACTATAGTGACGTTTTTAGT
* * * *
51845955 AAAAAGGCTGCAAAAAATTAAACTATAGTGGCGTTTTTATT
1 AAAAACGCCGCAAAAAATTAAACTATAGTGACGTTTTTAGT
*
51845996 GAAAACGCCGCAAAA
1 AAAAACGCCGCAAAA
51846011 GGCCATTATT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.26
Consensus pattern (41 bp):
AAAAACGCCGCAAAAAATTAAACTATAGTGACGTTTTTAGT
Found at i:51848806 original size:20 final size:22
Alignment explanation
Indices: 51848781--51848820 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
51848771 AAGAATATTT
51848781 TTCCTT-C-CTAATTTTCTTGG
1 TTCCTTACTCTAATTTTCTTGG
*
51848801 TTCCTTACTCTAGTTTTCTT
1 TTCCTTACTCTAATTTTCTT
51848821 ATTATAAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 1 0.06
22 10 0.59
ACGTcount: A:0.10, C:0.25, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCCTTACTCTAATTTTCTTGG
Found at i:51850056 original size:37 final size:37
Alignment explanation
Indices: 51850006--51850084 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
51849996 TTATTACGAA
* * *
51850006 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
51850043 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
51850080 GTCTT
1 GTCTT
51850085 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:51854004 original size:43 final size:42
Alignment explanation
Indices: 51853955--51854077 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
51853945 CGTTTATAAT
* *
51853955 AAAAGCGCCGTTAAAGGTCATGGTCTTTAGCGGCGTTTGCGGG
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTT-CGGA
* ***
51853998 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGTGTTTTTTA
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTCGGA
* * *
51854040 AAAAGCGCAGCTAAAAGTCATGATCTTTAGCGGCGTTT
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTT
51854078 TTTGCGGCGC
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
42 34 0.49
43 36 0.51
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (42 bp):
AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTCGGA
Found at i:51854060 original size:42 final size:42
Alignment explanation
Indices: 51853955--51854080 Score: 162
Period size: 42 Copynumber: 3.0 Consensus size: 42
51853945 CGTTTATAAT
* ****
51853955 AAAAGCGCCGTTAAAGGTCATGGTCTTTAGCGGCGTTTGCGGG
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTT-TTTA
*
51853998 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGTGTTTTTTA
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTTA
* * *
51854040 AAAAGCGCAGCTAAAAGTCATGATCTTTAGCGGCGTTTTTT
1 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTT
51854081 GCGGCGCTTG
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 37 0.51
43 36 0.49
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (42 bp):
AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTTTTA
Found at i:51855720 original size:34 final size:34
Alignment explanation
Indices: 51855682--51855747 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
51855672 TTTGCATGAT
* *
51855682 CATATAGGCTA-GCATGTACCAAGGGTTCGCATGG
1 CATATAGGC-ACGCATGCACCAAGGGATCGCATGG
*
51855716 CATATAGGCACGCATGCACCTAGGGATCGCAT
1 CATATAGGCACGCATGCACCAAGGGATCGCAT
51855748 AAAGGCTCAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 1 0.04
34 27 0.96
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.21
Consensus pattern (34 bp):
CATATAGGCACGCATGCACCAAGGGATCGCATGG
Found at i:51855810 original size:29 final size:29
Alignment explanation
Indices: 51855682--51855812 Score: 109
Period size: 29 Copynumber: 4.3 Consensus size: 29
51855672 TTTGCATGAT
* *
51855682 CATATAGGCTAGCATGTACCAAGGGTTCGCATGG
1 CATATAGGCTCGCATGTACCTAGGGTT--C---G
* * *
51855716 CATATAGGCACGCATGCACCTAGGGATCG
1 CATATAGGCTCGCATGTACCTAGGGTTCG
* * * *
51855745 CATAAAGGCTCACAAGTTCCTAGGGTTCG
1 CATATAGGCTCGCATGTACCTAGGGTTCG
* *
51855774 CACATAGGCTTGCATGTACCTAGGGTTCG
1 CATATAGGCTCGCATGTACCTAGGGTTCG
*
51855803 CATGTAGGCT
1 CATATAGGCT
51855813 AGTGTAACAA
Statistics
Matches: 77, Mismatches: 20, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
29 54 0.70
32 1 0.01
34 22 0.29
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (29 bp):
CATATAGGCTCGCATGTACCTAGGGTTCG
Found at i:51858936 original size:46 final size:47
Alignment explanation
Indices: 51858833--51858999 Score: 198
Period size: 46 Copynumber: 3.5 Consensus size: 47
51858823 ACATGATGCT
* * *
51858833 ATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGTTGCC
1 ATAGTATCTTTCAACCATGGTC-T--T-ATTCATTTTCATGTCACGTTGCC
*
51858883 ATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGTTGCC
1 ATAGTATCTTTCAACCATGGTCTTATTCATTTTCATGTCACGTTGCC
* *
51858929 ATAGTATCTTTCAACCATGGTCTTA--CATATTTCATATCAGGTTGCC
1 ATAGTATCTTTCAACCATGGTCTTATTCAT-TTTCATGTCACGTTGCC
*
51858975 ATGGTATCTTTCAACCATGGTCTTA
1 ATAGTATCTTTCAACCATGGTCTTA
51859000 CACATTTCAT
Statistics
Matches: 106, Mismatches: 8, Indels: 10
0.85 0.06 0.08
Matches are distributed among these distances:
44 1 0.01
45 6 0.06
46 78 0.74
47 1 0.01
49 1 0.01
50 19 0.18
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.43
Consensus pattern (47 bp):
ATAGTATCTTTCAACCATGGTCTTATTCATTTTCATGTCACGTTGCC
Found at i:51859000 original size:46 final size:46
Alignment explanation
Indices: 51858877--51859014 Score: 208
Period size: 46 Copynumber: 3.0 Consensus size: 46
51858867 TTTCTGTCAT
* *
51858877 GTTGCCATGGTATCTTTCAACCATGGTCTTATTC-T-TTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTA--CATATTTCATATCAG
*
51858923 GTTGCCATAGTATCTTTCAACCATGGTCTTACATATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAG
*
51858969 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAG
51859015 AGAGCACACT
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 83 0.98
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAG
Found at i:51859008 original size:92 final size:95
Alignment explanation
Indices: 51858833--51859009 Score: 245
Period size: 92 Copynumber: 1.9 Consensus size: 95
51858823 ACATGATGCT
* * * *
51858833 ATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 ATAGTATCTTTCAACCATGGTCTTAC-CATTCATTTTCTATCAGGTTGCCATGGTATCTTTCAAC
** *
51858898 CATGGTCTTATTCTTTTCATGTCACGTTGCC
65 CATGGTCTTACACATTTCATGTCACGTTGCC
51858929 ATAGTATCTTTCAACCATGGTCTTA-CA-T-A-TTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 ATAGTATCTTTCAACCATGGTCTTACCATTCATTTTC-TATCAGGTTGCCATGGTATCTTTCAAC
51858990 CATGGTCTTACACATTTCAT
65 CATGGTCTTACACATTTCAT
51859010 ATCAGAGAGC
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
91 4 0.05
92 43 0.59
93 1 0.01
94 2 0.03
96 23 0.32
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (95 bp):
ATAGTATCTTTCAACCATGGTCTTACCATTCATTTTCTATCAGGTTGCCATGGTATCTTTCAACC
ATGGTCTTACACATTTCATGTCACGTTGCC
Found at i:51861297 original size:58 final size:62
Alignment explanation
Indices: 51861178--51861290 Score: 198
Period size: 58 Copynumber: 1.9 Consensus size: 62
51861168 ATTCTTTTTC
51861178 TTTTTATTCCTTTTACTTTATATATATATATTATATAATAACTTAATAATAGCTATAATAAA
1 TTTTTATTCCTTTTACTTTATATATATATATTATATAATAACTTAATAATAGCTATAATAAA
51861240 TTTTTATTCCTTTTAC-TT-TATATATATA-T-TATAATAACTTAATAATAGCTA
1 TTTTTATTCCTTTTACTTTATATATATATATTATATAATAACTTAATAATAGCTA
51861291 GTATAAAATA
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
58 22 0.43
59 1 0.02
60 10 0.20
61 2 0.04
62 16 0.31
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (62 bp):
TTTTTATTCCTTTTACTTTATATATATATATTATATAATAACTTAATAATAGCTATAATAAA
Found at i:51862991 original size:17 final size:17
Alignment explanation
Indices: 51862971--51863015 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 17
51862961 ATAATCCTAG
51862971 GGTTCGCATATAATCAT
1 GGTTCGCATATAATCAT
*
51862988 GGTT--CACATAA-CAT
1 GGTTCGCATATAATCAT
*
51863002 GGCTCGCATATAAT
1 GGTTCGCATATAAT
51863016 AAACACATGG
Statistics
Matches: 22, Mismatches: 3, Indels: 6
0.71 0.10 0.19
Matches are distributed among these distances:
14 6 0.27
15 6 0.27
16 6 0.27
17 4 0.18
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (17 bp):
GGTTCGCATATAATCAT
Found at i:51863009 original size:31 final size:32
Alignment explanation
Indices: 51862974--51863050 Score: 102
Period size: 36 Copynumber: 2.3 Consensus size: 32
51862964 ATCCTAGGGT
51862974 TCGCATATAAT-CATGGTTCACATAACATGGC
1 TCGCATATAATACATGGTTCACATAACATGGC
*
51863005 TCGCATATAATAAACACATGGTTCACATATCATGGC
1 TCGCATATAAT----ACATGGTTCACATAACATGGC
51863041 TCGCATATAA
1 TCGCATATAA
51863051 ATTCAAATAA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
31 11 0.28
36 29 0.73
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (32 bp):
TCGCATATAATACATGGTTCACATAACATGGC
Found at i:51863290 original size:26 final size:28
Alignment explanation
Indices: 51863246--51863299 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 28
51863236 ACAAGGTGTT
51863246 CTCATATTCTAGGGCTTGCACCCACAGG
1 CTCATATTCTAGGGCTTGCACCCACAGG
*
51863274 CTCATATT-T-GGGCTTGCACCTACAGG
1 CTCATATTCTAGGGCTTGCACCCACAGG
51863300 GGTTTGCATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 16 0.64
27 1 0.04
28 8 0.32
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (28 bp):
CTCATATTCTAGGGCTTGCACCCACAGG
Found at i:51863532 original size:31 final size:31
Alignment explanation
Indices: 51863497--51863557 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
51863487 CCACACCTGT
51863497 TTTAGTTTGGAGAGGAGATTGAAGATCCACC
1 TTTAGTTTGGAGAGGAGATTGAAGATCCACC
51863528 TTTAGTTTGGAGAGGAGATTGAAGATCCAC
1 TTTAGTTTGGAGAGGAGATTGAAGATCCAC
51863558 TTAAGGGATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (31 bp):
TTTAGTTTGGAGAGGAGATTGAAGATCCACC
Found at i:51872552 original size:29 final size:30
Alignment explanation
Indices: 51872502--51872565 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
51872492 CTATTGTTCA
51872502 CAATATATCTATTTAAATTTAT-TTTATTTT
1 CAATATATCTATTTAAATTTATATTT-TTTT
*
51872532 CAATATAT-TA-TTATATGTTATATTTTTTT
1 CAATATATCTATTTAAAT-TTATATTTTTTT
*
51872561 GAATA
1 CAATA
51872566 AAAATAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 5 0.17
29 14 0.47
30 11 0.37
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (30 bp):
CAATATATCTATTTAAATTTATATTTTTTT
Found at i:51873171 original size:61 final size:61
Alignment explanation
Indices: 51873006--51873177 Score: 181
Period size: 61 Copynumber: 2.8 Consensus size: 61
51872996 TATCAATTTG
* * * * *
51873006 ATTCTAAA-TCTAAACAA-TTCAACAAATTTAAACTTTAATGTTAAAAAAATTTGTCATTTTA
1 ATTC-AAATTCTAAA-AATTTCAATAAATTTAATCTCTAATGTTTACAAAATTTGTCATTTTA
* ** * *
51873067 GTTTTAATTC-AAAAATGATCAATAAATTTAATC-CTCAATGTTTACAAAATTTTTCATTTTA
1 ATTCAAATTCTAAAAAT-TTCAATAAATTTAATCTCT-AATGTTTACAAAATTTGTCATTTTA
*
51873128 ATTCAAATTCTAAAAATTTCAATAAATTTAATCTCTAACGTTTACAAAAT
1 ATTCAAATTCTAAAAATTTCAATAAATTTAATCTCTAATGTTTACAAAAT
51873178 GACATTTTGA
Statistics
Matches: 90, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
59 2 0.02
60 6 0.07
61 74 0.82
62 8 0.09
ACGTcount: A:0.44, C:0.12, G:0.03, T:0.41
Consensus pattern (61 bp):
ATTCAAATTCTAAAAATTTCAATAAATTTAATCTCTAATGTTTACAAAATTTGTCATTTTA
Found at i:51874393 original size:16 final size:15
Alignment explanation
Indices: 51874363--51874403 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 15
51874353 TTAAAAATTA
51874363 ATTTTTAACTTAAAAT
1 ATTTTTAA-TTAAAAT
51874379 ATATTTTAATTAAAAT
1 AT-TTTTAATTAAAAT
51874395 ATTTTTAAT
1 ATTTTTAAT
51874404 GACATTGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.29
16 11 0.46
17 6 0.25
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTTTAATTAAAAT
Found at i:51881812 original size:14 final size:13
Alignment explanation
Indices: 51881787--51881815 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
51881777 AAAAATACTT
51881787 TTTAGTAAAAAAA
1 TTTAGTAAAAAAA
51881800 TTTAGTAAAAAAA
1 TTTAGTAAAAAAA
51881813 TTT
1 TTT
51881816 TGGATTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (13 bp):
TTTAGTAAAAAAA
Found at i:51883459 original size:43 final size:43
Alignment explanation
Indices: 51883382--51883468 Score: 101
Period size: 43 Copynumber: 2.0 Consensus size: 43
51883372 ATATGTGATT
*
51883382 TCGATATGTGTTTACGAGTAAGACCCTGCTTGGGACAG-TGGCA
1 TCGATATGTGGTTACGAGTAAGACCCTGCTTGGGAC-GTTGGCA
51883425 TCGATATGTGGTTAC-ATGTAAGACCACAT-C-TGGGACGTTGGCA
1 TCGATATGTGGTTACGA-GTAAGACC-C-TGCTTGGGACGTTGGCA
51883468 T
1 T
51883469 TGTACGATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
42 2 0.05
43 34 0.87
44 2 0.05
45 1 0.03
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (43 bp):
TCGATATGTGGTTACGAGTAAGACCCTGCTTGGGACGTTGGCA
Found at i:51887945 original size:26 final size:26
Alignment explanation
Indices: 51887915--51888022 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
51887905 TGAAATGCCC
*
51887915 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
51887941 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
51887967 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
51887993 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
51888019 ATCA
1 ATCA
51888023 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:51894066 original size:39 final size:40
Alignment explanation
Indices: 51893945--51894135 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
51893935 GGATATAACT
* *
51893945 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
51893985 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
51894025 ACTCGCACCAATGCCTTTGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
** * *
51894064 ACTCGCACAAATGCCTTC-GGATCTTAGTTCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
51894104 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCG
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCG
51894136 TATATCATTC
Statistics
Matches: 128, Mismatches: 18, Indels: 9
0.83 0.12 0.06
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 68 0.53
41 23 0.18
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:51894097 original size:79 final size:80
Alignment explanation
Indices: 51893919--51894140 Score: 229
Period size: 79 Copynumber: 2.8 Consensus size: 80
51893909 GAATCACATA
* * * * * *
51893919 CCTTCGGAATTTAA-CCGGATATAACT-ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATA
1 CCTTCGGGACTTAACCCGGATAT-AGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
51893982 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
* * *
51893998 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTTGGG-CTTAGCCCGGA-ATTA
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
51894061 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
*** * * * *
51894077 CCTTC-GGATCTTAGTTCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGTATAT
1 CCTTCGGGA-CTTAACCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
51894141 CATTCGAATA
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
78 4 0.03
79 61 0.52
80 40 0.34
81 11 0.09
82 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:51899749 original size:29 final size:29
Alignment explanation
Indices: 51899707--51899764 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
51899697 ACCTCTCGAG
*
51899707 TATGCGTTACAATTAGGGTTTAGCCTGGA
1 TATGCATTACAATTAGGGTTTAGCCTGGA
*
51899736 TATGCATTACAATTAGGGTTTAGCTTGGA
1 TATGCATTACAATTAGGGTTTAGCCTGGA
51899765 CTGGTAATCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (29 bp):
TATGCATTACAATTAGGGTTTAGCCTGGA
Found at i:51902155 original size:27 final size:27
Alignment explanation
Indices: 51902125--51902190 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
51902115 TTTCCACTTA
*
51902125 TAAGATAGTCCTGGCAGACTTCCCAT-T
1 TAAGATAGTCCTGACAGACTT-CCATAT
* * *
51902152 TAAGACAGTCTTGACGGACTTCCATAT
1 TAAGATAGTCCTGACAGACTTCCATAT
*
51902179 TAAAATAGTCCT
1 TAAGATAGTCCT
51902191 TATGGACTTC
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
26 4 0.13
27 27 0.87
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (27 bp):
TAAGATAGTCCTGACAGACTTCCATAT
Found at i:51908855 original size:18 final size:18
Alignment explanation
Indices: 51908832--51908886 Score: 92
Period size: 18 Copynumber: 3.0 Consensus size: 18
51908822 TTTTCATCTG
51908832 GAACTTACTAAGTTCATT
1 GAACTTACTAAGTTCATT
51908850 GAACTTACTAAGTTCATT
1 GAACTTACTAAGTTCATT
*
51908868 GAACTTACTTAGTTACATT
1 GAACTTACTAAGTT-CATT
51908887 TCCTTCTCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
18 31 0.89
19 4 0.11
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (18 bp):
GAACTTACTAAGTTCATT
Found at i:51917356 original size:53 final size:54
Alignment explanation
Indices: 51917288--51917489 Score: 208
Period size: 53 Copynumber: 3.7 Consensus size: 54
51917278 TCCTTTTTAG
* * * *
51917288 ACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GA
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGA
* * * * * *
51917341 ACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTA
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-A
** * * * * * *
51917396 GTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAA
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGA
* *
51917450 ACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTAT
1 ACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTAT
51917490 TCTTAAACCC
Statistics
Matches: 118, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 44 0.37
54 34 0.29
55 40 0.34
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
ACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGA
Found at i:51917442 original size:55 final size:53
Alignment explanation
Indices: 51917299--51917489 Score: 193
Period size: 55 Copynumber: 3.5 Consensus size: 53
51917289 CTTACCATTT
* *
51917299 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
* * * * ** * *
51917352 CCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AACTCACCAATG
* * * * *
51917407 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATG
* * *
51917461 CCATGCCTTGGCATGGTCTTACTTGGTAT
1 CCATGTCTTGACATGGTCTTACATGGTAT
51917490 TCTTAAACCC
Statistics
Matches: 109, Mismatches: 27, Indels: 3
0.78 0.19 0.02
Matches are distributed among these distances:
53 35 0.32
54 34 0.31
55 40 0.37
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
Found at i:51927138 original size:22 final size:22
Alignment explanation
Indices: 51927113--51927164 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
51927103 CACTAGGAAC
*
51927113 TATGTGATCTGAGCTCATGAGA
1 TATGTGATCTGAGCTCATAAGA
*
51927135 TATGTGGTCTGAGCTCATAAGA
1 TATGTGATCTGAGCTCATAAGA
*
51927157 CATGTGAT
1 TATGTGAT
51927165 ATATGTTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (22 bp):
TATGTGATCTGAGCTCATAAGA
Found at i:51932192 original size:42 final size:44
Alignment explanation
Indices: 51932095--51932255 Score: 159
Period size: 43 Copynumber: 3.8 Consensus size: 44
51932085 ATGGCAACAT
* * * *
51932095 CCAGACGTGGTCTTATATGT-AATCACATATCGATGCCATTGTC
1 CCAGACATGGTCTTACACGTAAATCACATATCGATGCCAATGTC
* * * *
51932138 CCAGATAGGGTCTTACACG-AACTCATATAT-GATGCCAATGTC
1 CCAGACATGGTCTTACACGTAAATCACATATCGATGCCAATGTC
* * * * *
51932180 CTAGACATGGTCTAACATGTAAATCACAAATCGATGCCAACGTC
1 CCAGACATGGTCTTACACGTAAATCACATATCGATGCCAATGTC
* *
51932224 CCAGACGTGGTCTTACAC-AAAATCACATATCG
1 CCAGACATGGTCTTACACGTAAATCACATATCG
51932256 GAATCCTATG
Statistics
Matches: 92, Mismatches: 23, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
42 25 0.27
43 42 0.46
44 25 0.27
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (44 bp):
CCAGACATGGTCTTACACGTAAATCACATATCGATGCCAATGTC
Found at i:51933372 original size:13 final size:13
Alignment explanation
Indices: 51933354--51933378 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51933344 ACAAATGATA
51933354 AAATTTTCACACG
1 AAATTTTCACACG
51933367 AAATTTTCACAC
1 AAATTTTCACAC
51933379 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:51938008 original size:19 final size:17
Alignment explanation
Indices: 51937986--51938028 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
51937976 TCGAGCCGTG
51937986 ATGGGCCGAAAGGGGCCAT
1 ATGGGCC-AAAGGGGCC-T
* *
51938005 ATGGGCCCAATGGGCCT
1 ATGGGCCAAAGGGGCCT
51938022 ATGGGCC
1 ATGGGCC
51938029 CAATTGGATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 8 0.36
18 7 0.32
19 7 0.32
ACGTcount: A:0.21, C:0.26, G:0.40, T:0.14
Consensus pattern (17 bp):
ATGGGCCAAAGGGGCCT
Found at i:51938026 original size:17 final size:18
Alignment explanation
Indices: 51937998--51938032 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
51937988 GGGCCGAAAG
51937998 GGGCCATATGGGCCCAAT
1 GGGCCATATGGGCCCAAT
51938016 GGGCC-TATGGGCCCAAT
1 GGGCCATATGGGCCCAAT
51938033 TGGATAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.20, C:0.29, G:0.34, T:0.17
Consensus pattern (18 bp):
GGGCCATATGGGCCCAAT
Found at i:51938144 original size:26 final size:27
Alignment explanation
Indices: 51938090--51938144 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
51938080 AATATCATAT
* * *
51938090 CTGTAGGCTAGTATTACTTAAATGCCC
1 CTGTAGGCTAGAATTACTAAAATGACC
*
51938117 CTGTAGGGTAGAATTACTAAAAT-ACC
1 CTGTAGGCTAGAATTACTAAAATGACC
51938143 CT
1 CT
51938145 TGGTTTATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (27 bp):
CTGTAGGCTAGAATTACTAAAATGACC
Found at i:51938158 original size:27 final size:27
Alignment explanation
Indices: 51938128--51938305 Score: 302
Period size: 27 Copynumber: 6.6 Consensus size: 27
51938118 TGTAGGGTAG
* * *
51938128 AATTACTAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
51938155 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
51938182 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
51938209 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
51938236 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
51938263 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
51938290 AATTACCAAAATACCC
1 AATTACCAAAATACCC
51938306 ATGATTAGTG
Statistics
Matches: 143, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTGTAA
Found at i:51938319 original size:27 final size:27
Alignment explanation
Indices: 51938128--51938405 Score: 287
Period size: 27 Copynumber: 10.3 Consensus size: 27
51938118 TGTAGGGTAG
* * * *
51938128 AATTACTAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCCTGATTTGTAA
51938155 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
*
51938182 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
51938209 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
*
51938236 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
51938263 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* * *
51938290 AATTACCAAAATACCCATGATTAGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
* ** **
51938317 AATTGCTGAAATA-CCCTCGACCTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
* *
51938344 AATTACTAAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
* * * * *
51938371 AATTACCGAAGTACCCCCGATTTATAG
1 AATTACCAAAATACCCCTGATTTGTAA
51938398 AATTACCA
1 AATTACCA
51938406 TTTTACCCTC
Statistics
Matches: 213, Mismatches: 30, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.01
27 206 0.97
28 4 0.02
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:51938455 original size:27 final size:27
Alignment explanation
Indices: 51938423--51938485 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
51938413 CTCAATTTAC
**
51938423 AAAATTATTGAAATATCCC-TATAGGGT
1 AAAATTACCGAAATA-CCCTTATAGGGT
* *
51938450 AGAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTATAGGGT
51938477 AAAATTACC
1 AAAATTACC
51938486 ATTTTACCCC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.10
27 27 0.90
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTATAGGGT
Found at i:51938925 original size:22 final size:22
Alignment explanation
Indices: 51938874--51938937 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
51938864 CCAATTATTT
* *
51938874 TGATTATGGCTTTGCGCCAACC
1 TGATTATGGCTCTGTGCCAACC
*
51938896 T-ACATATGGCTCTGTGCCAACC
1 TGA-TTATGGCTCTGTGCCAACC
*
51938918 TGATTATGGCTGTGTGCCAA
1 TGATTATGGCTCTGTGCCAA
51938938 ATGTATTTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.31
Consensus pattern (22 bp):
TGATTATGGCTCTGTGCCAACC
Found at i:51939126 original size:27 final size:26
Alignment explanation
Indices: 51939096--51939203 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
51939086 ATTCTGTTAA
* *
51939096 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
* * *
51939123 GTGGCTATGCCACAAATATATGTTCTA
1 GTGGCTCTGCCAC-AATATCTGTTCTG
51939150 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
51939177 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
51939203 G
1 G
51939204 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 13 0.19
27 51 0.73
28 6 0.09
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:51939153 original size:54 final size:53
Alignment explanation
Indices: 51939095--51939201 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 53
51939085 TATTCTGTTA
* * * *
51939095 AGTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATATGTTCT
1 AGTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCAC-AATATATGTTCT
* * *
51939149 AGTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTGTTCT
1 AGTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATATGTTCT
51939202 GGCAGCCATG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 11 0.24
54 35 0.76
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (53 bp):
AGTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATATGTTCT
Found at i:51939330 original size:6 final size:6
Alignment explanation
Indices: 51939321--51939455 Score: 62
Period size: 6 Copynumber: 22.0 Consensus size: 6
51939311 TTGCATTCAC
* * * * *
51939321 ATTCTG ATTCTC ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
51939371 ATTCTG ATTTTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* * * * *
51939420 ATTTTG ATACT- AGTTCTG ATTATG TTTCTT ATTCTG
1 ATTCTG ATTCTG A-TTCTG ATTCTG ATTCTG ATTCTG
51939456 TAATGGGCTA
Statistics
Matches: 92, Mismatches: 26, Indels: 22
0.66 0.19 0.16
Matches are distributed among these distances:
5 5 0.05
6 76 0.83
7 8 0.09
8 3 0.03
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:51939352 original size:25 final size:25
Alignment explanation
Indices: 51939324--51939388 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
51939314 CATTCACATT
* * *
51939324 CTGATTCTCATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
* *
51939349 CTGATTCTGATTTTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
*
51939374 CTGATTTTGATTCTG
1 CTGATTCTGATTCTG
51939389 ATTCTGATTC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:51939374 original size:19 final size:19
Alignment explanation
Indices: 51939349--51939416 Score: 86
Period size: 19 Copynumber: 3.6 Consensus size: 19
51939339 TTACCTGATA
51939349 CTGATTCTGATTTTGTCAC
1 CTGATTCTGATTTTGTCAC
* *
51939368 CTAATTCTGATTTTG--ATT
1 CTGATTCTGATTTTGTCA-C
*
51939386 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTTTGTCAC
51939405 CTGATTCTGATT
1 CTGATTCTGATT
51939417 CTCATTTTGA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
17 1 0.02
18 13 0.32
19 26 0.63
20 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.49
Consensus pattern (19 bp):
CTGATTCTGATTTTGTCAC
Found at i:51939391 original size:37 final size:37
Alignment explanation
Indices: 51939344--51939416 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
51939334 TTCTGTTACC
*
51939344 TGATACTGATTCTGATTTTGTCACCTAATTCTGATTT
1 TGATACTGATTCTGATTCTGTCACCTAATTCTGATTT
* *
51939381 TGATTCTGATTCTGATTCTGTCACCTGATTCTGATT
1 TGATACTGATTCTGATTCTGTCACCTAATTCTGATT
51939417 CTCATTTTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (37 bp):
TGATACTGATTCTGATTCTGTCACCTAATTCTGATTT
Found at i:51939437 original size:37 final size:37
Alignment explanation
Indices: 51939349--51939430 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
51939339 TTACCTGATA
* * * *
51939349 CTGATTCTGATTTTGTCACCTAATTCTGATTTTGATT
1 CTGATACTGATTCTGTCACCTAATTCTGATTCTCATT
* *
51939386 CTGATTCTGATTCTGTCACCTGATTCTGATTCTCATT
1 CTGATACTGATTCTGTCACCTAATTCTGATTCTCATT
*
51939423 TTGATACT
1 CTGATACT
51939431 AGTTCTGATT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.18, C:0.20, G:0.13, T:0.49
Consensus pattern (37 bp):
CTGATACTGATTCTGTCACCTAATTCTGATTCTCATT
Done.