Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 156 of 284
Found at i:52158831 original size:27 final size:27
Alignment explanation
Indices: 52158801--52159496 Score: 514
Period size: 27 Copynumber: 25.8 Consensus size: 27
52158791 TACTGAAATG
* * *
52158801 CCCTCAATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
52158828 CCCTCGATTTATAGAATTA-CAGTTTTA
1 CCCTCGATTTATAAAATTACCA-TTTTA
* *
52158855 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * * *
52158882 CCCTCAATTTACAGAATTAGCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
52158909 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
**
52158936 CCCTCGATTTCCAAAATTACCA-TTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
52158962 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
52158989 CTCTCGATTTATAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
52159016 CCCGCGATTTATATAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
52159043 CCTTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
52159070 CCCTCGATTTA-AAGAATTACAATTTTA
1 CCCTCGATTTATAA-AATTACCATTTTA
* *
52159097 CCCTCTATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
52159124 CCCTCGATTTATAGAATTA-TAGTTTTA
1 CCCTCGATTTATAAAATTACCA-TTTTA
* *
52159151 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * * ***
52159178 CCCTCAATTTAAAAAATTACTAAAATA
1 CCCTCGATTTATAAAATTACCATTTTA
* * ***
52159205 CCCTTGGTTTATAAAATTACCAAAATA
1 CCCTCGATTTATAAAATTACCATTTTA
***
52159232 CCCTCGA-TTAGTAAAATTACCAAAATA
1 CCCTCGATTTA-TAAAATTACCATTTTA
* * * ***
52159259 TCCCTAG-TTTGTAAAATTACTAAAATA
1 -CCCTCGATTTATAAAATTACCATTTTA
* * ***
52159286 CCCTTGGTTTATAAAATTACCAAAATA
1 CCCTCGATTTATAAAATTACCATTTTA
***
52159313 CCCTCGA-TTAGTAAAATTACCAAAATA
1 CCCTCGATTTA-TAAAATTACCATTTTA
* * * ***
52159340 TCCCTAG-TTTGTAAAATTACTAAAATA
1 -CCCTCGATTTATAAAATTACCATTTTA
* * ***
52159367 CCCTTGGTTTATAAAATTACCAAAATA
1 CCCTCGATTTATAAAATTACCATTTTA
***
52159394 CCCTCGA-TTAGTAAAATTACCAAAATA
1 CCCTCGATTTA-TAAAATTACCATTTTA
* * * ***
52159421 TCCCTAG-TTTGTAAAATTACTAAAATA
1 -CCCTCGATTTATAAAATTACCATTTTA
* * ***
52159448 CCCTTGGTTTATAAAATTACCAAAATA
1 CCCTCGATTTATAAAATTACCATTTTA
52159475 CCCTCGA-TTAGTAAAATTACCA
1 CCCTCGATTTA-TAAAATTACCA
52159497 AAATATCCCT
Statistics
Matches: 577, Mismatches: 72, Indels: 40
0.84 0.10 0.06
Matches are distributed among these distances:
26 55 0.10
27 498 0.86
28 24 0.04
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:52159497 original size:27 final size:27
Alignment explanation
Indices: 52159190--52159638 Score: 409
Period size: 27 Copynumber: 16.7 Consensus size: 27
52159180 CTCAATTTAA
* * *
52159190 AAAATTACTAAAATACCCTTGGTTTA-T
1 AAAATTACCAAAATACCC-TCGATTAGT
52159217 AAAATTACCAAAATACCCTCGATTAGT
1 AAAATTACCAAAATACCCTCGATTAGT
* *
52159244 AAAATTACCAAAATATCCCTAG-TTTGT
1 AAAATTACCAAAATA-CCCTCGATTAGT
* * *
52159271 AAAATTACTAAAATACCCTTGGTTTA-T
1 AAAATTACCAAAATACCC-TCGATTAGT
52159298 AAAATTACCAAAATACCCTCGATTAGT
1 AAAATTACCAAAATACCCTCGATTAGT
* *
52159325 AAAATTACCAAAATATCCCTAG-TTTGT
1 AAAATTACCAAAATA-CCCTCGATTAGT
* * *
52159352 AAAATTACTAAAATACCCTTGGTTTA-T
1 AAAATTACCAAAATACCC-TCGATTAGT
52159379 AAAATTACCAAAATACCCTCGATTAGT
1 AAAATTACCAAAATACCCTCGATTAGT
* *
52159406 AAAATTACCAAAATATCCCTAG-TTTGT
1 AAAATTACCAAAATA-CCCTCGATTAGT
* * *
52159433 AAAATTACTAAAATACCCTTGGTTTA-T
1 AAAATTACCAAAATACCC-TCGATTAGT
52159460 AAAATTACCAAAATACCCTCGATTAGT
1 AAAATTACCAAAATACCCTCGATTAGT
* *
52159487 AAAATTACCAAAATATCCCTAG-TTTGT
1 AAAATTACCAAAATA-CCCTCGATTAGT
* * *
52159514 AAAATTACTAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTAGT
* * *
52159541 AAAATTACCAAAATAGCTCTGGCTT-GT
1 AAAATTACCAAAATA-CCCTCGATTAGT
* **
52159568 AAAATTGCCAAAATACCC-CTGATTTTT
1 AAAATTACCAAAATACCCTC-GATTAGT
* * * *
52159595 GAAATTATCAAAATACTCTCGATTTGT
1 AAAATTACCAAAATACCCTCGATTAGT
*
52159622 AAAA-TATCAAAATACCC
1 AAAATTACCAAAATACCC
52159639 CTATAGGGTA
Statistics
Matches: 352, Mismatches: 49, Indels: 43
0.79 0.11 0.10
Matches are distributed among these distances:
26 49 0.14
27 272 0.77
28 31 0.09
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTAGT
Found at i:52159497 original size:81 final size:81
Alignment explanation
Indices: 52159190--52159638 Score: 708
Period size: 81 Copynumber: 5.6 Consensus size: 81
52159180 CTCAATTTAA
52159190 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
1 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
52159255 AATATCCCTAGTTTGT
66 AATATCCCTAGTTTGT
52159271 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
1 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
52159336 AATATCCCTAGTTTGT
66 AATATCCCTAGTTTGT
52159352 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
1 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
52159417 AATATCCCTAGTTTGT
66 AATATCCCTAGTTTGT
52159433 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
1 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
52159498 AATATCCCTAGTTTGT
66 AATATCCCTAGTTTGT
* * * * * * *
52159514 AAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAATAGCTCTGGCTT-GTAAAATTGCCA
1 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATA-CCCTCGATTAGTAAAATTACCA
* *
52159578 AAATACCCCT-GATTTTT
65 AAATATCCCTAG-TTTGT
* * * * * *
52159595 GAAATTA-TCAAAATACTCTCGATTTGTAAAA-TATCAAAATACCC
1 AAAATTACT-AAAATACCCTTGGTTTATAAAATTACCAAAATACCC
52159639 CTATAGGGTA
Statistics
Matches: 348, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
79 2 0.01
80 11 0.03
81 329 0.95
82 6 0.02
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.32
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAGTAAAATTACCAA
AATATCCCTAGTTTGT
Found at i:52159695 original size:54 final size:54
Alignment explanation
Indices: 52159630--52159844 Score: 270
Period size: 54 Copynumber: 4.0 Consensus size: 54
52159620 GTAAAATATC
* * *
52159630 AAAATACCCCTATAGGGTAGGATTACCAAAATACCCCTGTAGGGTAGAATTACT
1 AAAATAACCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
* *
52159684 AAAATAACCCTATAGGGTAGAATTACCGAAATACCCCTATAGGTTAGAATTACT
1 AAAATAACCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
* * * *
52159738 AAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACC
1 AAAATAACCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
* * * ** * *
52159792 AAAAT-ACCCTTGTAGGGTAGAATTATCGAGATACCTTTGTGGGGTAAAATTAC
1 AAAATAACCC-TATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTAC
52159845 CATTTTGCCC
Statistics
Matches: 141, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
53 3 0.02
54 138 0.98
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.26
Consensus pattern (54 bp):
AAAATAACCCTATAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACT
Found at i:52159826 original size:27 final size:27
Alignment explanation
Indices: 52159629--52159816 Score: 259
Period size: 27 Copynumber: 7.0 Consensus size: 27
52159619 TGTAAAATAT
*
52159629 CAAAATACCCCTATAGGGTAGGATTAC
1 CAAAATACCCCTATAGGGTAGAATTAC
*
52159656 CAAAATACCCCTGTAGGGTAGAATTAC
1 CAAAATACCCCTATAGGGTAGAATTAC
* *
52159683 TAAAATAACCCTATAGGGTAGAATTAC
1 CAAAATACCCCTATAGGGTAGAATTAC
* *
52159710 CGAAATACCCCTATAGGTTAGAATTAC
1 CAAAATACCCCTATAGGGTAGAATTAC
*
52159737 TAAAATACCCCTATAGGGTAGAATTAC
1 CAAAATACCCCTATAGGGTAGAATTAC
* * * *
52159764 CGAAATACCCTTGTAGGGTAGAAATAC
1 CAAAATACCCCTATAGGGTAGAATTAC
* *
52159791 CAAAATACCCTTGTAGGGTAGAATTA
1 CAAAATACCCCTATAGGGTAGAATTA
52159817 TCGAGATACC
Statistics
Matches: 142, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (27 bp):
CAAAATACCCCTATAGGGTAGAATTAC
Found at i:52159831 original size:27 final size:27
Alignment explanation
Indices: 52159631--52159845 Score: 216
Period size: 27 Copynumber: 8.0 Consensus size: 27
52159621 TAAAATATCA
* * * *
52159631 AAATACCCCTATAGGGTAGGATTACCA
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
52159658 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACCG
*
52159685 AAATAACCC-TATAGGGTAGAATTACCG
1 AAAT-ACCCTTGTAGGGTAGAATTACCG
* * * **
52159712 AAATACCCCTATAGGTTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
52159739 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
52159766 AAATACCCTTGTAGGGTAGAAATACCA
1 AAATACCCTTGTAGGGTAGAATTACCG
*
52159793 AAATACCCTTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
52159820 AGATACCTTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACC
52159846 ATTTTGCCCC
Statistics
Matches: 162, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 4 0.02
27 154 0.95
28 4 0.02
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:52160080 original size:25 final size:25
Alignment explanation
Indices: 52160046--52160142 Score: 122
Period size: 25 Copynumber: 3.9 Consensus size: 25
52160036 GGAGGAAGTG
* *
52160046 CTAAAAGGGCTATGCCCCGGTTTAC
1 CTAAAAGGGCTTTGCCCCAGTTTAC
52160071 CTAAAAGGGCTTTGCCCCAGTTTAC
1 CTAAAAGGGCTTTGCCCCAGTTTAC
* ** * *
52160096 CGAAAATTGCTTTGCCCCAATTTAT
1 CTAAAAGGGCTTTGCCCCAGTTTAC
*
52160121 CAAAAAGGGCTTTGCCCCAGTT
1 CTAAAAGGGCTTTGCCCCAGTT
52160143 ATTAAAAGAG
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 61 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.28
Consensus pattern (25 bp):
CTAAAAGGGCTTTGCCCCAGTTTAC
Found at i:52164096 original size:80 final size:79
Alignment explanation
Indices: 52163977--52164134 Score: 307
Period size: 80 Copynumber: 2.0 Consensus size: 79
52163967 ACCATTCCTA
52163977 CTCATAAAAAAATAATACCTTTATTTGCTTACCTTGTGACCTGAACCTTAGCTCCCCTTTGACTT
1 CTCATAAAAAAATAATACCTTTATTTGCTTACCTTGTGACCTGAACCTTAGCTCCCCTTTGACTT
52164042 CCACATGCCACCTG
66 CCACATGCCACCTG
52164056 CTCATAAAAAAAATAATACCTTTATTTGCTTACCTTGTGACCTGAACCTTAGCTCCCCTTTGACT
1 CTCAT-AAAAAAATAATACCTTTATTTGCTTACCTTGTGACCTGAACCTTAGCTCCCCTTTGACT
52164121 TCCACATGCCACCT
65 TCCACATGCCACCT
52164135 TTTTAGCACC
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
79 5 0.06
80 73 0.94
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.33
Consensus pattern (79 bp):
CTCATAAAAAAATAATACCTTTATTTGCTTACCTTGTGACCTGAACCTTAGCTCCCCTTTGACTT
CCACATGCCACCTG
Found at i:52169322 original size:4 final size:4
Alignment explanation
Indices: 52169313--52169339 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
52169303 TCCAAAAACT
52169313 TTTG TTTG TTTG TTTG TTTG TTTG TTT
1 TTTG TTTG TTTG TTTG TTTG TTTG TTT
52169340 TAGACCCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78
Consensus pattern (4 bp):
TTTG
Found at i:52178450 original size:16 final size:16
Alignment explanation
Indices: 52178429--52178462 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
52178419 TTGCCTTTGG
52178429 GATTATTGCAACCTGT
1 GATTATTGCAACCTGT
52178445 GATTATTGCAACCTGT
1 GATTATTGCAACCTGT
52178461 GA
1 GA
52178463 AAATTCCGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (16 bp):
GATTATTGCAACCTGT
Found at i:52179611 original size:27 final size:27
Alignment explanation
Indices: 52179581--52179635 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
52179571 TAGAGTTGTA
*
52179581 ACATCTTGATTTTCGGATTTATTCGCG
1 ACATCCTGATTTTCGGATTTATTCGCG
52179608 ACATCCTGATTTTCGGATTTATTCGCG
1 ACATCCTGATTTTCGGATTTATTCGCG
52179635 A
1 A
52179636 TTTTCAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.42
Consensus pattern (27 bp):
ACATCCTGATTTTCGGATTTATTCGCG
Found at i:52181202 original size:231 final size:231
Alignment explanation
Indices: 52180790--52181250 Score: 870
Period size: 231 Copynumber: 2.0 Consensus size: 231
52180780 GGAACAATCA
52180790 AATTCGGAGCTAGCTATCGATTTTGGCAAAAAGGTAAGGGTTCAAAGGCTTTTAGGGATATGGTT
1 AATTCGGAGCTAGCTATCGATTTTGGCAAAAAGGTAAGGGTTCAAAGGCTTTTAGGGATATGGTT
52180855 CGATCATGGATAAGTAAGTTTTGGGGGTCTAGTGATTATGGTTTGTAAATAAGAACTGTGCTAAT
66 CGATCATGGATAAGTAAGTTTTGGGGGTCTAGTGATTATGGTTTGTAAATAAGAACTGTGCTAAT
52180920 AAATTGTAGGACATCGAAAGGGATCTCAGTAGCAGTCATCGCGAATCAGGTGTGTACCGAACACC
131 AAATTGTAGGACATCGAAAGGGATCTCAGTAGCAGTCATCGCGAATCAGGTGTGTACCGAACACC
52180985 CTTTCTTAGTTCAATTCGG-CAAAAGCCGAAATGCCG
196 CTTTCTTAGTT-AATTCGGACAAAAGCCGAAATGCCG
52181021 AATTCGGAGCTAGCTATCGATTTTGGCAAAAAGGTAAGGGTTCAAAGGCTTTTAGGGATATGGTT
1 AATTCGGAGCTAGCTATCGATTTTGGCAAAAAGGTAAGGGTTCAAAGGCTTTTAGGGATATGGTT
*
52181086 CGATCATGGATAAGTAAGTTTTGGGGGTTTAGTGATTATGGTTTGTAAATAAGAACTGTGCTAAT
66 CGATCATGGATAAGTAAGTTTTGGGGGTCTAGTGATTATGGTTTGTAAATAAGAACTGTGCTAAT
* *
52181151 AAATTGTAGGACATCGAAAGGGATCTCAGTAGCAGTCGTCGCGAGTCAGGTGTGTACCGAACACC
131 AAATTGTAGGACATCGAAAGGGATCTCAGTAGCAGTCATCGCGAATCAGGTGTGTACCGAACACC
*
52181216 CTTTCTTAGTTAATTCGGATAAAAGCCGAAATGCC
196 CTTTCTTAGTTAATTCGGACAAAAGCCGAAATGCC
52181251 AAAATTCCGG
Statistics
Matches: 225, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
230 7 0.03
231 218 0.97
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (231 bp):
AATTCGGAGCTAGCTATCGATTTTGGCAAAAAGGTAAGGGTTCAAAGGCTTTTAGGGATATGGTT
CGATCATGGATAAGTAAGTTTTGGGGGTCTAGTGATTATGGTTTGTAAATAAGAACTGTGCTAAT
AAATTGTAGGACATCGAAAGGGATCTCAGTAGCAGTCATCGCGAATCAGGTGTGTACCGAACACC
CTTTCTTAGTTAATTCGGACAAAAGCCGAAATGCCG
Found at i:52197018 original size:11 final size:11
Alignment explanation
Indices: 52197002--52197028 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
52196992 TTAAAAAAAT
52197002 TTGAGTCATTA
1 TTGAGTCATTA
52197013 TTGAGTCATTA
1 TTGAGTCATTA
52197024 TTGAG
1 TTGAG
52197029 CACTGACAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.07, G:0.22, T:0.44
Consensus pattern (11 bp):
TTGAGTCATTA
Found at i:52203894 original size:30 final size:30
Alignment explanation
Indices: 52203860--52203918 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
52203850 TCATTAACTC
52203860 AAACTTTTGAAAAATTACAATTTTGCCCCA
1 AAACTTTTGAAAAATTACAATTTTGCCCCA
* * * *
52203890 AAACTTTTGCATATTTACACTTTTGCCCC
1 AAACTTTTGAAAAATTACAATTTTGCCCC
52203919 TAGGCTCGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCA
Found at i:52222201 original size:40 final size:40
Alignment explanation
Indices: 52221962--52222187 Score: 321
Period size: 40 Copynumber: 5.7 Consensus size: 40
52221952 TTGAATGATG
* * * * *
52221962 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
52222002 TCCGGACTAAGACCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
52222042 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
52222082 TCCGGGTTAAGGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
52222122 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
52222163 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
52222188 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
40 162 0.95
41 9 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:52223855 original size:37 final size:36
Alignment explanation
Indices: 52223812--52223893 Score: 101
Period size: 38 Copynumber: 2.2 Consensus size: 36
52223802 AAATAGAAGT
52223812 GAAAGAAAAAGAAATTGAAAATGAAAAGAGAATGGGA
1 GAAAGAAAAAGAAATTGAAAATGAAAA-AGAATGGGA
* * * *
52223849 GAAAGAAAAAAGAGATTGAGATTGAAAAAGAATGTGA
1 GAAAG-AAAAAGAAATTGAAAATGAAAAAGAATGGGA
*
52223886 GCAAGAAA
1 GAAAGAAA
52223894 TGTAAGTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
36 3 0.08
37 17 0.44
38 19 0.49
ACGTcount: A:0.60, C:0.01, G:0.27, T:0.12
Consensus pattern (36 bp):
GAAAGAAAAAGAAATTGAAAATGAAAAAGAATGGGA
Found at i:52223869 original size:19 final size:18
Alignment explanation
Indices: 52223788--52223893 Score: 60
Period size: 19 Copynumber: 5.8 Consensus size: 18
52223778 TTTTAAACAA
52223788 AATTGAGAGAAGAAAAATAG
1 AATTGAGA-AAGAAAAA-AG
*
52223808 AA--GTGAAAG-AAAAAG
1 AATTGAGAAAGAAAAAAG
*
52223823 AAATTGA-AAATGAAAAGAG
1 -AATTGAGAAA-GAAAAAAG
*
52223842 AATGGGAGAAAGAAAAAAG
1 AAT-TGAGAAAGAAAAAAG
**
52223861 AGATTGAGATTG-AAAAAG
1 A-ATTGAGAAAGAAAAAAG
*
52223879 AATGTGAGCAAGAAA
1 AAT-TGAGAAAGAAA
52223894 TGTAAGTTTA
Statistics
Matches: 65, Mismatches: 11, Indels: 21
0.67 0.11 0.22
Matches are distributed among these distances:
15 2 0.03
16 6 0.09
17 8 0.12
18 20 0.31
19 22 0.34
20 7 0.11
ACGTcount: A:0.59, C:0.01, G:0.26, T:0.13
Consensus pattern (18 bp):
AATTGAGAAAGAAAAAAG
Found at i:52238100 original size:40 final size:39
Alignment explanation
Indices: 52238016--52238200 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
52238006 TCGAATGATG
* * *
52238016 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
52238056 TCCGGACTAAGATCCGAAAGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
52238096 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
52238135 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
52238176 -CCGGGCTATGTCCCGGAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
52238201 AATGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:52238152 original size:79 final size:81
Alignment explanation
Indices: 52238016--52238198 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
52238006 TCGAATGATG
* *
52238016 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAAGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAAGCATT
52238080 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * ** *
52238095 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAAGCA
52238157 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
52238175 ACCGGGCTATGTCCCGGAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
52238199 TGAATGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAAGCATT
TGTGCGAGTTACTATA
Found at i:52238222 original size:79 final size:78
Alignment explanation
Indices: 52238050--52238223 Score: 183
Period size: 79 Copynumber: 2.2 Consensus size: 78
52238040 GTGCTAAGTG
* *
52238050 ACTATATCCGGACTAAGATCCGAAAGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAGATCCGAAAGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
**
52238115 CATTGGTGCGAGTT
65 CATTGGAACGAGTT
* * * *
52238129 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGG
1 ACTATATCC-GGTTAAGAT-CCGAAAGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGA
* *
52238192 AGGCATTTGAATGAG-T
62 AGGCATTGGAACGAGTT
52238208 AGCTATATCCGGTTAA
1 A-CTATATCCGGTTAA
52238224 ATTTCGAAGG
Statistics
Matches: 79, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
78 3 0.04
79 52 0.66
80 24 0.30
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
ACTATATCCGGTTAAGATCCGAAAGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGC
ATTGGAACGAGTT
Found at i:52241506 original size:56 final size:56
Alignment explanation
Indices: 52241420--52241651 Score: 439
Period size: 56 Copynumber: 4.1 Consensus size: 56
52241410 ACAAGGGATG
52241420 ATGGG-AACAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAA-AACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
52241476 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
52241532 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
52241588 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
52241644 ATGGGCAA
1 ATGGGCAA
52241652 TAAACTAATA
Statistics
Matches: 174, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
56 172 0.99
57 2 0.01
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:52242375 original size:40 final size:40
Alignment explanation
Indices: 52242223--52242368 Score: 163
Period size: 40 Copynumber: 3.6 Consensus size: 40
52242213 TCGAATGATG
* * * *
52242223 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
52242263 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
52242303 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
52242344 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
52242369 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 79 0.88
41 10 0.11
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:52248295 original size:56 final size:56
Alignment explanation
Indices: 52248209--52248380 Score: 319
Period size: 56 Copynumber: 3.1 Consensus size: 56
52248199 ACAAGGGATG
52248209 ATGGG-AACAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAA-AACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
52248265 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
52248321 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
52248377 ATGG
1 ATGG
52248381 TCAATAAACT
Statistics
Matches: 114, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
56 112 0.98
57 2 0.02
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:52249607 original size:40 final size:39
Alignment explanation
Indices: 52249523--52249707 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
52249513 TTGAATGATG
* * * *
52249523 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
52249563 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
52249603 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
52249642 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTA-AA
** *
52249683 -CTTGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
52249708 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:52249660 original size:79 final size:80
Alignment explanation
Indices: 52249523--52249679 Score: 203
Period size: 79 Copynumber: 2.0 Consensus size: 80
52249513 TTGAATGATG
* *
52249523 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
52249588 GTGCGAGATACTAAT
66 GTGCGAGATACTAAT
* * * **
52249603 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAAATCCGGACTAAGATC-CGAAGGCAT
*
52249665 TTGTGCGAGTTACTA
64 TTGTGCGAGATACTA
52249680 TAACTTGGCT
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 2 0.03
79 48 0.72
80 17 0.25
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAT
Found at i:52249729 original size:79 final size:78
Alignment explanation
Indices: 52249560--52249740 Score: 181
Period size: 79 Copynumber: 2.3 Consensus size: 78
52249550 CTAAGTGACC
* *
52249560 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCAT
**
52249625 TGGTGCGAGTTACT
65 TGGAACGAGTTACT
* * ** *
52249639 AAATCCGGGTTAAG-TCTCGAAGGCATTTGTGCGAGTTACT-ATAACTTGGCTATGTCCCGAAGG
1 ATATCC-GGTTAAGATC-CGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGG
*
52249702 CATTTGAACGAG-TAGCT
62 CATTGGAACGAGTTA-CT
52249719 ATATCCGGTTAA-ATTCCGAAGG
1 ATATCCGGTTAAGA-TCCGAAGG
52249741 TACGTGATTT
Statistics
Matches: 84, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
78 4 0.05
79 52 0.62
80 28 0.33
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (78 bp):
ATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:52261048 original size:50 final size:50
Alignment explanation
Indices: 52260973--52261084 Score: 206
Period size: 50 Copynumber: 2.2 Consensus size: 50
52260963 TAAATGACCA
52260973 TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTCATCT
1 TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTCATCT
*
52261023 TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTGATCT
1 TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTCATCT
*
52261073 TGTGTATTCGGC
1 TGTATATTCGGC
52261085 TAAATGAGTG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.24, C:0.13, G:0.21, T:0.42
Consensus pattern (50 bp):
TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTCATCT
Found at i:52266354 original size:40 final size:40
Alignment explanation
Indices: 52266310--52266573 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
52266300 GCTCCTCGTT
* *
52266310 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
52266350 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
52266390 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
52266430 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
52266470 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
52266509 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
52266550 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
52266574 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:52276720 original size:105 final size:105
Alignment explanation
Indices: 52276533--52276742 Score: 393
Period size: 105 Copynumber: 2.0 Consensus size: 105
52276523 GACCTTTGCG
*
52276533 CATTACGACCTGGATATCTCCCTGTACAGAACTTCCATACTGGTGCCGTTTATTTCTATAGAAAC
1 CATTACGACCTGGATATCTCCCGGTACAGAACTTCCATACTGGTGCCGTTTATTTCTATAGAAAC
52276598 TAGACTCAGAGAAGAATCTATACATATATGGTATGACTCC
66 TAGACTCAGAGAAGAATCTATACATATATGGTATGACTCC
* *
52276638 CATTTCGACCTGGATATCTCCCGGTACAGAACTTCCATACTGGTGCCGTTTGTTTCTATAGAAAC
1 CATTACGACCTGGATATCTCCCGGTACAGAACTTCCATACTGGTGCCGTTTATTTCTATAGAAAC
52276703 TAGACTCAGAGAAGAATCTATACATATATGGTATGACTCC
66 TAGACTCAGAGAAGAATCTATACATATATGGTATGACTCC
52276743 TAATTATCTC
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 102 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (105 bp):
CATTACGACCTGGATATCTCCCGGTACAGAACTTCCATACTGGTGCCGTTTATTTCTATAGAAAC
TAGACTCAGAGAAGAATCTATACATATATGGTATGACTCC
Found at i:52277918 original size:27 final size:27
Alignment explanation
Indices: 52277888--52278093 Score: 322
Period size: 27 Copynumber: 7.6 Consensus size: 27
52277878 TTATTAAGTC
* *
52277888 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
52277915 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
52277942 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
52277969 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
52277997 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
52278024 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
52278052 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
52278079 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
52278094 GCACAATTTA
Statistics
Matches: 170, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
27 118 0.69
28 52 0.31
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:52278022 original size:55 final size:54
Alignment explanation
Indices: 52277888--52278093 Score: 331
Period size: 55 Copynumber: 3.8 Consensus size: 54
52277878 TTATTAAGTC
* * * *
52277888 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
52277942 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCA-ACT
*
52277997 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACT
* *
52278052 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
52278094 GCACAATTTA
Statistics
Matches: 143, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
54 47 0.33
55 95 0.66
56 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACT
Found at i:52278024 original size:82 final size:82
Alignment explanation
Indices: 52277888--52278093 Score: 342
Period size: 82 Copynumber: 2.5 Consensus size: 82
52277878 TTATTAAGTC
* * *
52277888 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTATATAATCAACTCGCACACTTAG
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACTCGCACACTTAG
52277953 TGCTACATAGTC-AACT
66 TGCTACATAGTCAAACT
*
52277969 CGCACACTTAGTGCTACATAATCATACTCGCACACTTAGTGCTACATAGTCAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCTACATAATCAACTCGCACACTTA
52278034 GTGCTACATAGTCAAACT
65 GTGCTACATAGTCAAACT
* *
52278052 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT
52278094 GCACAATTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
81 22 0.19
82 68 0.58
83 27 0.23
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAACTCGCACACTTAG
TGCTACATAGTCAAACT
Found at i:52279281 original size:95 final size:95
Alignment explanation
Indices: 52279118--52279307 Score: 371
Period size: 95 Copynumber: 2.0 Consensus size: 95
52279108 TCACAACTTT
52279118 AACACAATATACTAACCTTATTAAACATTCAAATGGCCAAAAGTTCTTTGCCCCTATTCCTTCCT
1 AACACAATATACTAACCTTATTAAACATTCAAATGGCCAAAAGTTCTTTGCCCCTATTCCTTCCT
52279183 TCAATTCGGCCAAGAAGACAAGAATGAAGC
66 TCAATTCGGCCAAGAAGACAAGAATGAAGC
*
52279213 AACACAATATACTAACCTTATTAAACATTCAAATGGCCGAAAGTTCTTTGCCCCTATTCCTTCCT
1 AACACAATATACTAACCTTATTAAACATTCAAATGGCCAAAAGTTCTTTGCCCCTATTCCTTCCT
52279278 TCAATTCGGCCAAGAAGACAAGAATGAAGC
66 TCAATTCGGCCAAGAAGACAAGAATGAAGC
52279308 CCTTTTTTTT
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 94 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.26
Consensus pattern (95 bp):
AACACAATATACTAACCTTATTAAACATTCAAATGGCCAAAAGTTCTTTGCCCCTATTCCTTCCT
TCAATTCGGCCAAGAAGACAAGAATGAAGC
Found at i:52289990 original size:24 final size:24
Alignment explanation
Indices: 52289939--52290033 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 24
52289929 GCTTTATCAT
*
52289939 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
52289964 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
52289988 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
52290011 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
52290034 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.35
24 30 0.46
25 12 0.18
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:52290014 original size:23 final size:23
Alignment explanation
Indices: 52289960--52290032 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
52289950 CCTAGCCTCT
*
52289960 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
52289983 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
52290007 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
52290030 TTT
1 TTT
52290033 TGCACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
23 26 0.54
24 22 0.46
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:52290109 original size:20 final size:20
Alignment explanation
Indices: 52290084--52290122 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
52290074 TATGAATACA
52290084 TCATGTGCATAGCATACATG
1 TCATGTGCATAGCATACATG
*
52290104 TCATGTGCATATCATACAT
1 TCATGTGCATAGCATACAT
52290123 ACCATGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (20 bp):
TCATGTGCATAGCATACATG
Found at i:52290128 original size:20 final size:20
Alignment explanation
Indices: 52290085--52290129 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
52290075 ATGAATACAT
**
52290085 CATGTGCATAGCATACATGT
1 CATGTGCATAGCATACATAC
*
52290105 CATGTGCATATCATACATAC
1 CATGTGCATAGCATACATAC
52290125 CATGT
1 CATGT
52290130 TTACTAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (20 bp):
CATGTGCATAGCATACATAC
Found at i:52295085 original size:23 final size:23
Alignment explanation
Indices: 52295056--52295101 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
52295046 TAAAGTATAC
52295056 CTATAAGCATAAATGTGATTTTG
1 CTATAAGCATAAATGTGATTTTG
52295079 CTATAAGCATAAATGTGATTTTG
1 CTATAAGCATAAATGTGATTTTG
52295102 GTAAGTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (23 bp):
CTATAAGCATAAATGTGATTTTG
Found at i:52296698 original size:23 final size:23
Alignment explanation
Indices: 52296672--52296717 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
52296662 AGGTAGAAGA
52296672 TAGGCTCAAACAGAGGTTCAAGG
1 TAGGCTCAAACAGAGGTTCAAGG
*
52296695 TAGGCTCATACAGAGGTTCAAGG
1 TAGGCTCAAACAGAGGTTCAAGG
52296718 AATGTTTAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (23 bp):
TAGGCTCAAACAGAGGTTCAAGG
Found at i:52296844 original size:18 final size:18
Alignment explanation
Indices: 52296806--52296845 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
52296796 TTAAAAGCAC
***
52296806 TTAGTTGGATAATTTGGT
1 TTAGTTGGATAATTCAAT
52296824 TTAGTTGGATAATTCAAT
1 TTAGTTGGATAATTCAAT
52296842 TTAG
1 TTAG
52296846 GAAACAACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.47
Consensus pattern (18 bp):
TTAGTTGGATAATTCAAT
Found at i:52297725 original size:27 final size:28
Alignment explanation
Indices: 52297673--52297727 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
52297663 AGCTCAATTA
**
52297673 GGTTGTTTAAGTCTAAGACACTTTAAAT
1 GGTTGTTTAAGTCTAAGACAAATTAAAT
*
52297701 GGTTGTTTGAG-CTAAGACAAATTAAAT
1 GGTTGTTTAAGTCTAAGACAAATTAAAT
52297728 AGATTTTAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 14 0.58
28 10 0.42
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (28 bp):
GGTTGTTTAAGTCTAAGACAAATTAAAT
Found at i:52299320 original size:42 final size:43
Alignment explanation
Indices: 52299273--52299374 Score: 100
Period size: 43 Copynumber: 2.4 Consensus size: 43
52299263 TTTTATGTGC
* * * *
52299273 AAGACCATGTCTGGGACA-TCGACATC-GTTTTTGATTTCGTGT
1 AAGACCATGTCTGGGACAGT-GACATCAATGTTTGATTACATGT
* * * *
52299315 AAGACCCTATCTGGGATAGTGGCATCAATGTTTGATTACATGT
1 AAGACCATGTCTGGGACAGTGACATCAATGTTTGATTACATGT
*
52299358 AAGACCACGTCTGGGAC
1 AAGACCATGTCTGGGAC
52299375 GTTGGCATTA
Statistics
Matches: 46, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
42 20 0.43
43 26 0.57
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
AAGACCATGTCTGGGACAGTGACATCAATGTTTGATTACATGT
Found at i:52303434 original size:40 final size:40
Alignment explanation
Indices: 52303322--52303439 Score: 191
Period size: 40 Copynumber: 3.0 Consensus size: 40
52303312 CGGATGTAAC
* *
52303322 AACCAGCACAAATGCCTTCGGGACTTAACCCGATTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
52303362 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
52303402 AACCTGCACGAATGCCTTCGGGACTTAACCCGGGTATA
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATA
52303440 TTTTTTTTCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:52310604 original size:40 final size:40
Alignment explanation
Indices: 52310527--52310703 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
52310517 AAACCAAGTA
* * *
52310527 CCTTCGGAATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
52310566 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
52310606 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
52310646 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
52310685 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
52310704 TTATCATCCG
Statistics
Matches: 127, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 48 0.38
40 78 0.61
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:52310680 original size:79 final size:80
Alignment explanation
Indices: 52310527--52310703 Score: 254
Period size: 79 Copynumber: 2.2 Consensus size: 80
52310517 AAACCAAGTA
* * * *
52310527 CCTTCGGAATTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
52310591 TAACTCGCACAAATG
66 TAACTAGCACAAATG
52310606 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATT
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-T
*
52310668 AGTCACTAGCACAAATG
64 AGTAACTAGCACAAATG
52310685 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
52310704 TTATCATCCG
Statistics
Matches: 89, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTAGCACAAATG
Found at i:52314914 original size:274 final size:274
Alignment explanation
Indices: 52314425--52314965 Score: 1028
Period size: 274 Copynumber: 2.0 Consensus size: 274
52314415 GTCCCAAAAA
52314425 GCTCCGAACCTCAGTAATATTTCTCGGAGGCTTCCAGTTAAGTATGGCCGAAATTTTGCTCGGGT
1 GCTCCGAACCTCAGTAATATTTCTCGGAGGCTTCCAGTTAAGTATGGCCGAAATTTTGCTCGGGT
52314490 CAACTCGAATACCCGATGCGGATACCACATGGCCCAAGAAGCTAACCTCTCTTAACCAGAACTCA
66 CAACTCGAATACCCGATGCGGATACCACATGGCCCAAGAAGCTAACCTCTCTTAACCAGAACTCA
52314555 CACTTACTGAACTTAGCATATAACTGCTTATCCCGTAAAATTTGCAACACTAATCTCAGGTGCTC
131 CACTTACTGAACTTAGCATATAACTGCTTATCCCGTAAAATTTGCAACACTAATCTCAGGTGCTC
* *
52314620 CGCATGTTCGGTCTCATCTCTTGAATAGACCAAGATGTCGTCAATGAACACAACTACGAACCGGT
196 CGCATGTTCGGTCTCATCTCTTGAATAGACCAAGATGTCATCAATGAACACAACTACGAACCGAT
52314685 CCAAATACTGTCTG
261 CCAAATACTGTCTG
* * * *
52314699 GCTCCGAACCTCAGTAATATTTCTCGGAGGTTTCCAGTTAAGTATGGCTGAGATTTTGTTCGGGT
1 GCTCCGAACCTCAGTAATATTTCTCGGAGGCTTCCAGTTAAGTATGGCCGAAATTTTGCTCGGGT
52314764 CAACTCGAATACCCGATGCGGATACCACATGGCCCAAGAAGCTAACCTCTCTTAACCAGAACTCA
66 CAACTCGAATACCCGATGCGGATACCACATGGCCCAAGAAGCTAACCTCTCTTAACCAGAACTCA
52314829 CACTTACTGAACTTAGCATATAACTGCTTATCCCGTAAAATTTGCAACACTAATCTCAGGTGCTC
131 CACTTACTGAACTTAGCATATAACTGCTTATCCCGTAAAATTTGCAACACTAATCTCAGGTGCTC
52314894 CGCATGTTCGGTCTCATCTCTTGAATAGACCAAGATGTCATCAATGAACACAACTACGAACCGAT
196 CGCATGTTCGGTCTCATCTCTTGAATAGACCAAGATGTCATCAATGAACACAACTACGAACCGAT
52314959 CCAAATA
261 CCAAATA
52314966 TGGTCTGAAG
Statistics
Matches: 261, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
274 261 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (274 bp):
GCTCCGAACCTCAGTAATATTTCTCGGAGGCTTCCAGTTAAGTATGGCCGAAATTTTGCTCGGGT
CAACTCGAATACCCGATGCGGATACCACATGGCCCAAGAAGCTAACCTCTCTTAACCAGAACTCA
CACTTACTGAACTTAGCATATAACTGCTTATCCCGTAAAATTTGCAACACTAATCTCAGGTGCTC
CGCATGTTCGGTCTCATCTCTTGAATAGACCAAGATGTCATCAATGAACACAACTACGAACCGAT
CCAAATACTGTCTG
Found at i:52316557 original size:58 final size:57
Alignment explanation
Indices: 52316445--52316631 Score: 240
Period size: 58 Copynumber: 3.3 Consensus size: 57
52316435 CCACTGACCG
* * * *
52316445 ATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAATGCCTCAATTACC
1 ATCTCGCACACATAATGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACC
*
52316501 AATCTCGCACACATAATGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACTG
1 -ATCTCGCACACATAATGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTAC-C
* * *
52316560 ATCTCGCACACATAGTGCTCGGTTAACGGAATTTGCACACACAGTGCCTCTAA-T--C
1 ATCTCGCACACATAATGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC-AATTACC
52316615 AT-TCGCACACATAATGC
1 ATCTCGCACACATAATGC
52316632 CCATATTCCT
Statistics
Matches: 117, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
54 14 0.12
55 2 0.02
57 25 0.21
58 74 0.63
59 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (57 bp):
ATCTCGCACACATAATGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATTACC
Found at i:52316597 original size:29 final size:29
Alignment explanation
Indices: 52316448--52316606 Score: 105
Period size: 29 Copynumber: 5.5 Consensus size: 29
52316438 CTGACCGATC
* *
52316448 TCGCACACATAGTGCTCGGTTGAA--GAAC
1 TCGCACACACAGTGCTCGGTT-AACGGAAT
* ** *
52316476 TCGCACACACAATGCCTCAATT-AC-CAAT
1 TCGCACACACAGTG-CTCGGTTAACGGAAT
* * *
52316504 CTCGCACACATAATGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAACGGAAT
** *
52316534 TCGCACACACAGTGCCTCAATT-ACTG-AT
1 TCGCACACACAGTG-CTCGGTTAACGGAAT
*
52316562 CTCGCACACATAGTGCTCGGTTAACGGAAT
1 -TCGCACACACAGTGCTCGGTTAACGGAAT
*
52316592 TTGCACACACAGTGC
1 TCGCACACACAGTGC
52316607 CTCTAATCAT
Statistics
Matches: 99, Mismatches: 23, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
27 1 0.01
28 26 0.26
29 62 0.63
30 10 0.10
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (29 bp):
TCGCACACACAGTGCTCGGTTAACGGAAT
Found at i:52316824 original size:43 final size:43
Alignment explanation
Indices: 52316763--52316949 Score: 320
Period size: 43 Copynumber: 4.3 Consensus size: 43
52316753 CCTTGCTCGA
** *
52316763 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
52316806 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
52316849 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
52316892 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
52316935 ATCACCGGCACGAAG
1 ATCACCGGCACGAAG
52316950 ACCCGAATAC
Statistics
Matches: 135, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 135 1.00
ACGTcount: A:0.32, C:0.32, G:0.24, T:0.13
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:52318721 original size:37 final size:37
Alignment explanation
Indices: 52318663--52318735 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
52318653 TAGCTCGAAT
* *
52318663 AATCCCCACACGTAGTTATCGGGTCTTACTCGGACAA
1 AATCCCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
52318700 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AATCCCCACACGTAGTCATCGGGTCTTACCCGGACA
52318736 GCCATTCGGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCCCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:52318791 original size:48 final size:48
Alignment explanation
Indices: 52318735--52319044 Score: 503
Period size: 48 Copynumber: 6.4 Consensus size: 48
52318725 TTACCCGGAC
52318735 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
1 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
* * **
52318783 AGCCATTCGGATTTACCACATATATATATATCTCATACATATTTCATGTT
1 AGCCATTCGGCTTTACCAC--ATATACATATCTCATACATATTTCACATT
52318833 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
1 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
52318881 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
1 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
* * **
52318929 AGCCATTCGGATTTACCACATATATATATATCTCATACATATTTCATGTT
1 AGCCATTCGGCTTTACCAC--ATATACATATCTCATACATATTTCACATT
52318979 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
1 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
*
52319027 AGCGATTCGGCTTTACCA
1 AGCCATTCGGCTTTACCA
52319045 NNNNNNNNNN
Statistics
Matches: 241, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
48 153 0.63
50 88 0.37
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (48 bp):
AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
Found at i:52318904 original size:98 final size:96
Alignment explanation
Indices: 52318735--52319044 Score: 503
Period size: 98 Copynumber: 3.2 Consensus size: 96
52318725 TTACCCGGAC
*
52318735 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACC
1 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
* **
52318800 ACATATATATATATCTCATACATATTTCATGTT
66 AC--ATATACATATCTCATACATATTTCACATT
52318833 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
1 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
52318898 ACATATACATATCTCATACATATTTCACATT
66 ACATATACATATCTCATACATATTTCACATT
* * **
52318929 AGCCATTCGGATTTACCACATATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTA
1 AGCCATTCGGCTTTACCAC--ATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
52318994 CCACATATACATATCTCATACATATTTCACATT
64 CCACATATACATATCTCATACATATTTCACATT
*
52319027 AGCGATTCGGCTTTACCA
1 AGCCATTCGGCTTTACCA
52319045 NNNNNNNNNN
Statistics
Matches: 200, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
96 44 0.22
98 156 0.78
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (96 bp):
AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
ACATATACATATCTCATACATATTTCACATT
Found at i:52318999 original size:146 final size:146
Alignment explanation
Indices: 52318735--52319044 Score: 611
Period size: 146 Copynumber: 2.1 Consensus size: 146
52318725 TTACCCGGAC
52318735 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACC
1 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACC
52318800 ACATATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATATCTC
66 ACATATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATATCTC
52318865 ATACATATTTCACATT
131 ATACATATTTCACATT
52318881 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACC
1 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACC
52318946 ACATATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATATCTC
66 ACATATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATATCTC
52319011 ATACATATTTCACATT
131 ATACATATTTCACATT
*
52319027 AGCGATTCGGCTTTACCA
1 AGCCATTCGGCTTTACCA
52319045 NNNNNNNNNN
Statistics
Matches: 163, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 163 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (146 bp):
AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACC
ACATATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACATATCTC
ATACATATTTCACATT
Found at i:52321829 original size:46 final size:46
Alignment explanation
Indices: 52321779--52321947 Score: 200
Period size: 46 Copynumber: 3.7 Consensus size: 46
52321769 TGGTTGAGCA
* *
52321779 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
52321825 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* *
52321872 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *
52321918 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA
52321948 TTTAGGGGCG
Statistics
Matches: 105, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 58 0.55
47 29 0.28
48 3 0.03
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:52321935 original size:93 final size:93
Alignment explanation
Indices: 52321776--52321946 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
52321766 GGATGGTTGA
* *
52321776 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
52321841 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* ** *
52321869 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
52321934 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
52321947 ATTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:52323371 original size:25 final size:25
Alignment explanation
Indices: 52323306--52323371 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
52323296 TCTCAAAAAT
* *
52323306 TTAATTAAA-TAAAAATTATTAATGA
1 TTAAATAAATTAAAAATTA-TAATAA
*
52323331 TTCAATAAATTGAAAAATTA-AATAA
1 TTAAATAAATT-AAAAATTATAATAA
52323356 TTAAATAAAATTAAAA
1 TTAAAT-AAATTAAAA
52323372 TTTAGGAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
25 20 0.59
26 6 0.18
27 8 0.24
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.35
Consensus pattern (25 bp):
TTAAATAAATTAAAAATTATAATAA
Found at i:52324196 original size:22 final size:20
Alignment explanation
Indices: 52324157--52324203 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
52324147 TATAAAGTTG
52324157 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
52324176 ATAATAGATATAATTATATATTA
1 ATAATA-AT-TAA-TATATATTA
52324199 ATAAT
1 ATAAT
52324204 TATCATCCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:52324310 original size:29 final size:30
Alignment explanation
Indices: 52324253--52324310 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
52324243 CTTTTGAAAA
* * *
52324253 TATTAACAAAAAGAGGCATCTAATTTTTAT
1 TATTAACAAAAAGAGGCAACCAAATTTTAT
*
52324283 TATTTACAAAAAGA-GCAACCAAATTTTA
1 TATTAACAAAAAGAGGCAACCAAATTTTA
52324311 AAAATACTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.33
Consensus pattern (30 bp):
TATTAACAAAAAGAGGCAACCAAATTTTAT
Found at i:52325668 original size:16 final size:16
Alignment explanation
Indices: 52325631--52325671 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
52325621 CTTCTTCCTC
*
52325631 TCTTTTTCCTCCATTT
1 TCTTTTTCTTCCATTT
*
52325647 TC--TTTCTTCCTTTT
1 TCTTTTTCTTCCATTT
52325661 TCTTTTTCTTC
1 TCTTTTTCTTC
52325672 TAGCTGAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 12 0.57
16 9 0.43
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.68
Consensus pattern (16 bp):
TCTTTTTCTTCCATTT
Found at i:52341078 original size:93 final size:93
Alignment explanation
Indices: 52340971--52341141 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
52340961 GCCCCTAAGT
* *
52340971 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
52341036 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
52341064 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
52341129 CGAGTTCGGATGC
66 CGAGTTCGGATGC
52341142 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:52341138 original size:46 final size:46
Alignment explanation
Indices: 52340966--52341138 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
52340956 AACCCGCCCC
* * *
52340966 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
52341012 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
52341060 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
52341105 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
52341139 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:52348450 original size:50 final size:50
Alignment explanation
Indices: 52348379--52348628 Score: 223
Period size: 50 Copynumber: 5.0 Consensus size: 50
52348369 TAAGATGGTT
* * * *
52348379 TTAGGTTACATATGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
* ** * * * * *
52348429 TTAGGTCGCATGAATAGTACTAAGTACAGGCTATTATGCGTACCCGACAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA-TAG
* * * * ** * *
52348480 TTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGAATATCAGATGG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
** * * * *
52348530 TTAGGTCATGTGTGTAGTACTAAGTGCAGGCTACTATGTGGACCGGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
* * *
52348580 TT-GGTCGCATGTGTAGTACTAAGTGTAGGCTATTATGCGTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
52348629 CTTCAGTTAC
Statistics
Matches: 152, Mismatches: 47, Indels: 3
0.75 0.23 0.01
Matches are distributed among these distances:
49 38 0.25
50 79 0.52
51 35 0.23
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
Found at i:52352784 original size:50 final size:50
Alignment explanation
Indices: 52352725--52352964 Score: 245
Period size: 50 Copynumber: 4.8 Consensus size: 50
52352715 GATAAAATGT
** * *
52352725 CGATGCCATGTCCTGGATATGGTCTTACACCAGCTCTCATATATCGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGGTGC
** **
52352775 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTGACATA-A-CAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGGTGC
* * * * *
52352823 TGATGCCATGGT-CCAAACATGGTCTTACATTAGCT-TGCACATATTGGTGC
1 CGATGCCAT-GTCCCAGACATGGTCTTACACTAGCTCT-CATATATCGGTGC
* * * *
52352873 CGATGCCACGTCCCAGACATGGTCTTACACTGGCTCGCATATACCGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGGTGC
* ** *
52352923 CGATGCCCTGTCATAGACATGGTCTTACACTGGCTCTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT
52352965 CGCCATGGTC
Statistics
Matches: 154, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
48 36 0.23
49 6 0.04
50 112 0.73
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGGTGC
Found at i:52352964 original size:98 final size:98
Alignment explanation
Indices: 52352716--52352964 Score: 274
Period size: 98 Copynumber: 2.5 Consensus size: 98
52352706 ATACAAAAGG
* * * * *
52352716 ATAA-AATGTCGATGCCATGTCCTGGATATGGTCTTACACCAGCTCTCATATATCGGTGCCGATG
1 ATAACAATGCCGATGCCATGTCATAGACATGGTCTTACACTAGCTCTCATATATCGGTGCCGATG
*
52352780 CCATGTCCCAGACATGGTCTTACACTAGCTGAC
66 CCACGTCCCAGACATGGTCTTACACTAGCTGAC
* * * *
52352813 ATAACAATGCTGATGCCATGGTCCA-A-ACATGGTCTTACATTAGCT-TGCACATATTGGTGCCG
1 ATAACAATGCCGATGCCAT-GT-CATAGACATGGTCTTACACTAGCTCT-CATATATCGGTGCCG
*
52352875 ATGCCACGTCCCAGACATGGTCTTACACTGGCTCG-C
63 ATGCCACGTCCCAGACATGGTCTTACACTAGCT-GAC
** * *
52352911 ATATACCGGTGCCGATGCCCTGTCATAGACATGGTCTTACACTGGCTCTCATAT
1 ATA-A-CAATGCCGATGCCATGTCATAGACATGGTCTTACACTAGCTCTCATAT
52352965 CGCCATGGTC
Statistics
Matches: 124, Mismatches: 18, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
97 5 0.04
98 78 0.63
99 7 0.06
100 33 0.27
101 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (98 bp):
ATAACAATGCCGATGCCATGTCATAGACATGGTCTTACACTAGCTCTCATATATCGGTGCCGATG
CCACGTCCCAGACATGGTCTTACACTAGCTGAC
Found at i:52356658 original size:40 final size:40
Alignment explanation
Indices: 52356614--52356877 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
52356604 GCTCCTCGTT
* *
52356614 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
52356654 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
52356694 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
52356734 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
52356774 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
52356813 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
52356854 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
52356878 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:52373578 original size:24 final size:24
Alignment explanation
Indices: 52373536--52373581 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
52373526 ATAAATCGGC
*
52373536 AAAAGCCGAAACGCCGAAAAGTTG
1 AAAAGCCAAAACGCCGAAAAGTTG
* *
52373560 AAAAGCCAAAATGCTGAAAAGT
1 AAAAGCCAAAACGCCGAAAAGT
52373582 CAAAAGTTGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.50, C:0.17, G:0.22, T:0.11
Consensus pattern (24 bp):
AAAAGCCAAAACGCCGAAAAGTTG
Found at i:52373815 original size:29 final size:29
Alignment explanation
Indices: 52373775--52373874 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
52373765 AATGTGACTA
*
52373775 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
52373804 GGCCTAATGGGCCATATACAA-GTGATTTG
1 GGCCTAATGGGCCATATA-AATGTGATTTG
* *
52373833 GGCCTAATGGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
52373861 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
52373875 GATACGGGTA
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
28 18 0.28
29 45 0.69
30 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:52379469 original size:27 final size:27
Alignment explanation
Indices: 52379431--52379594 Score: 188
Period size: 27 Copynumber: 6.1 Consensus size: 27
52379421 GGTCATTATC
52379431 TGACCGTAATACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* * *
52379458 TGACCGTAATA-CCCTATATGCTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* *
52379484 TGATCGTAATACCCCTATAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
*
52379511 TGACCGTCATACCCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
** * ** *
52379538 AAATCGTAATGGCCTTGTAGGGTAAAA
1 TGACCGTAATACCCCTGTAGGGTAAAA
* *
52379565 TGACCGTAATA-CCCTGTATGGTAATA
1 TGACCGTAATACCCCTGTAGGGTAAAA
52379591 TGAC
1 TGAC
52379595 GATTATGTTC
Statistics
Matches: 113, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
26 38 0.34
27 75 0.66
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (27 bp):
TGACCGTAATACCCCTGTAGGGTAAAA
Found at i:52379515 original size:53 final size:53
Alignment explanation
Indices: 52379435--52379593 Score: 210
Period size: 53 Copynumber: 3.0 Consensus size: 53
52379425 ATTATCTGAC
* *
52379435 CGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCTATATGCTAAAATGAT
1 CGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCTGTATGGTAAAATGAT
* * * **
52379488 CGTAATACCCCTATAGGGTAAAATGACCGTCATACCCCTGTAGGGTAAAAAAAT
1 CGTAATACCCCTGTAGGGTAAAATGACCGTAATA-CCCTGTATGGTAAAATGAT
** * *
52379542 CGTAATGGCCTTGTAGGGTAAAATGACCGTAATACCCTGTATGGTAATATGA
1 CGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCTGTATGGTAAAATGA
52379594 CGATTATGTT
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
53 46 0.52
54 43 0.48
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (53 bp):
CGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCTGTATGGTAAAATGAT
Found at i:52379780 original size:27 final size:26
Alignment explanation
Indices: 52379731--52379809 Score: 68
Period size: 27 Copynumber: 3.0 Consensus size: 26
52379721 TGGAGGAAGT
* * * *
52379731 ACTGTATTGGTGACTACGTCACATTC
1 ACTGTATTGGTGGCTATGCCACATTA
*
52379757 ACTGTTATTGGTGGCTATGCCACAATA
1 ACTG-TATTGGTGGCTATGCCACATTA
* * *
52379784 AATGATACTGGTGGCTTTGCCACATT
1 ACTG-TATTGGTGGCTATGCCACATT
52379810 TACTATTCTG
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
26 4 0.10
27 38 0.90
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (26 bp):
ACTGTATTGGTGGCTATGCCACATTA
Found at i:52380329 original size:22 final size:21
Alignment explanation
Indices: 52380304--52380345 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
52380294 TTTAAAACTG
*
52380304 ATAAACACGGATTTTCAAAAAT
1 ATAAAAAC-GATTTTCAAAAAT
*
52380326 ATAAAAACTATTTTCAAAAA
1 ATAAAAACGATTTTCAAAAA
52380346 CACTTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.55, C:0.12, G:0.05, T:0.29
Consensus pattern (21 bp):
ATAAAAACGATTTTCAAAAAT
Found at i:52384180 original size:27 final size:27
Alignment explanation
Indices: 52384138--52384330 Score: 233
Period size: 27 Copynumber: 7.1 Consensus size: 27
52384128 GGTCATTATC
*
52384138 TGACCGTAATACCCCTATAGGGTAAAT
1 TGACCGTAATACCCCTATAGGGTAAAA
* * * *
52384165 TGACCTTAATAACCCTGTAGCGTAAAA
1 TGACCGTAATACCCCTATAGGGTAAAA
* *
52384192 TGACCGTAATACCTCTATAGGTTAAAA
1 TGACCGTAATACCCCTATAGGGTAAAA
*
52384219 TGACTGTAATACCCCTATAGGGTAAAA
1 TGACCGTAATACCCCTATAGGGTAAAA
*
52384246 TGACCGTCATACCCCTATAGGGTAAAA
1 TGACCGTAATACCCCTATAGGGTAAAA
* * * *
52384273 TGATCGTAATGCTCCTGTAGGGTAAAA
1 TGACCGTAATACCCCTATAGGGTAAAA
* * * *
52384300 TGACCGTAACACCCCTGTATGGTAATA
1 TGACCGTAATACCCCTATAGGGTAAAA
52384327 TGAC
1 TGAC
52384331 GATTATGCCC
Statistics
Matches: 139, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (27 bp):
TGACCGTAATACCCCTATAGGGTAAAA
Found at i:52384529 original size:27 final size:27
Alignment explanation
Indices: 52384499--52384550 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
52384489 ATTCACTATA
*
52384499 ACTGGTTACTATGCCACAATTACTGAT
1 ACTGGTGACTATGCCACAATTACTGAT
* * *
52384526 ACTGGTGGCTTTGCCACATTTACTG
1 ACTGGTGACTATGCCACAATTACTG
52384551 TTCTGGTAGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (27 bp):
ACTGGTGACTATGCCACAATTACTGAT
Found at i:52385834 original size:13 final size:13
Alignment explanation
Indices: 52385816--52385843 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
52385806 TAAATAATAA
52385816 AATTTTTGGCCAT
1 AATTTTTGGCCAT
52385829 AATTTTTGGCCAT
1 AATTTTTGGCCAT
52385842 AA
1 AA
52385844 CCTTTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (13 bp):
AATTTTTGGCCAT
Found at i:52386471 original size:19 final size:19
Alignment explanation
Indices: 52386447--52386484 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
52386437 TTCATTTTTT
52386447 TTCTCCTTTCTTC-TCCTCC
1 TTCTCC-TTCTTCTTCCTCC
52386466 TTCTCCTTCTTCTTCCTCC
1 TTCTCCTTCTTCTTCCTCC
52386485 CTCAACCCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (19 bp):
TTCTCCTTCTTCTTCCTCC
Found at i:52387566 original size:48 final size:47
Alignment explanation
Indices: 52387459--52387580 Score: 147
Period size: 48 Copynumber: 2.6 Consensus size: 47
52387449 TTTAGCAGAG
* *
52387459 AAAAGAAGATAAAAGGAAATTAGGAAGAAGAAAGGTCACTAGAAAAAA
1 AAAAGAA-AAAAAAGAAAATTAGGAAGAAGAAAGGTCACTAGAAAAAA
* * *
52387507 GATAGAAAAAAAATGAAAATTGGGAAGAAGAAAGGTCACTAGGAAAAAA
1 AAAAGAAAAAAAA-GAAAATTAGGAAGAAGAAAGGTCACTA-GAAAAAA
* *
52387556 AAAAG-GAAAAAAGGAAATTAGGAAG
1 AAAAGAAAAAAAAGAAAATTAGGAAG
52387581 TATAGTTTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
47 16 0.26
48 36 0.58
49 10 0.16
ACGTcount: A:0.61, C:0.03, G:0.25, T:0.11
Consensus pattern (47 bp):
AAAAGAAAAAAAAGAAAATTAGGAAGAAGAAAGGTCACTAGAAAAAA
Found at i:52388302 original size:26 final size:26
Alignment explanation
Indices: 52388270--52388319 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
52388260 TGAGAAGTCC
52388270 AAGTATCTATAGTGTGATTTGTTTCT
1 AAGTATCTATAGTGTGATTTGTTTCT
52388296 AAGTATCTATAGTGTGATTTGTTT
1 AAGTATCTATAGTGTGATTTGTTT
52388320 TGTTAAGTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.06, G:0.20, T:0.50
Consensus pattern (26 bp):
AAGTATCTATAGTGTGATTTGTTTCT
Found at i:52389771 original size:243 final size:244
Alignment explanation
Indices: 52389333--52389813 Score: 630
Period size: 243 Copynumber: 2.0 Consensus size: 244
52389323 TCACCTATCC
* *
52389333 AAATACAAACTAATAGATTAGGTGCATCATGCTTGACTGCTTATAACTGCTCTATCAAACTAAAA
1 AAATACAAACTAATAGATTAGGTGCATCATGCTT-ACTGATTATAACTACTCTATCAAACTAAAA
* *
52389398 AAAATCAAAAAAAATTGACATACTACTTTTAAAATATCTAAGAAAAATCTCAAGTGTCTAATACT
65 AAAATCAAAAAAAATTGACATACTACTCTTAAAATATCTAAGAAAAATCTCAACTGTCTAATACT
* * * * * * ** ***
52389463 CCTCCTTGAGATTTTTCTTGGAAACTCTAAGCTTTGTCCTTAGAAGCTCAAATCTATTTCTTGAG
130 CCTCCTTAAGATTTTTCCTGGAAACACCAAGCTTTGTCCTTAAAAACTCAAATAGAGGCCTTGAG
*
52389528 ACAATCTTAGTTAGAACATCTGCAACTTGATCTT-TAGATTTGCCATAACA
195 ACAACCTTAGTTAGAACATCTGCAACTTGATCTTCT-GATTTGCCATAACA
* * * * *
52389578 AAATATAAACTAATAGATTAGGTGCATCATGCTT-CTTATTGTAACTACTCTGTCAAGCTAAAAT
1 AAATACAAACTAATAGATTAGGTGCATCATGCTTACTGATTATAACTACTCTATCAAACTAAAA-
* ** ** *
52389642 AAACAT-AAAACAAATT-TTATACTACTCTTGGAATATCTAAGAAGAATCTCAAACT-TCTAATA
65 AAA-ATCAAAAAAAATTGACATACTACTCTTAAAATATCTAAGAAAAATCTC-AACTGTCTAATA
*
52389704 CTCCTCCTTAAGATTTTTCCTGGAGACACCAAGCTTTGTCCTTAAAAACTCAAATAGAGGCCTTG
128 CTCCTCCTTAAGATTTTTCCTGGAAACACCAAGCTTTGTCCTTAAAAACTCAAATAGAGGCCTTG
52389769 AGACAACCTTAGTTAGAACATCTGCAACTTGATCTTCTGATTTGC
193 AGACAACCTTAGTTAGAACATCTGCAACTTGATCTTCTGATTTGC
52389814 AATATATCAC
Statistics
Matches: 204, Mismatches: 28, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
243 153 0.75
244 16 0.08
245 35 0.17
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (244 bp):
AAATACAAACTAATAGATTAGGTGCATCATGCTTACTGATTATAACTACTCTATCAAACTAAAAA
AAATCAAAAAAAATTGACATACTACTCTTAAAATATCTAAGAAAAATCTCAACTGTCTAATACTC
CTCCTTAAGATTTTTCCTGGAAACACCAAGCTTTGTCCTTAAAAACTCAAATAGAGGCCTTGAGA
CAACCTTAGTTAGAACATCTGCAACTTGATCTTCTGATTTGCCATAACA
Found at i:52393584 original size:23 final size:23
Alignment explanation
Indices: 52393558--52393611 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
52393548 TGTGTGAATT
*
52393558 GTGATGTGTTTCAAGACAATGGG
1 GTGATGTGTTTCAAGACAATGAG
52393581 GTGATGTGTTTCAAGACAATGAG
1 GTGATGTGTTTCAAGACAATGAG
*
52393604 GTAATGTG
1 GTGATGTG
52393612 ATAGTTTAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.33, T:0.31
Consensus pattern (23 bp):
GTGATGTGTTTCAAGACAATGAG
Found at i:52400675 original size:40 final size:39
Alignment explanation
Indices: 52400631--52400735 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
52400621 AGTGACCATA
*
52400631 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
52400671 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
52400709 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
52400736 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:52400692 original size:39 final size:40
Alignment explanation
Indices: 52400591--52400754 Score: 169
Period size: 40 Copynumber: 4.1 Consensus size: 40
52400581 TTGAATGATG
* *
52400591 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
52400631 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
52400670 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* * **
52400710 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATA-CTATA
52400750 TCCGG
1 TCCGG
52400755 TTAAATTCCG
Statistics
Matches: 106, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
39 36 0.34
40 59 0.56
41 10 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:52400754 original size:79 final size:80
Alignment explanation
Indices: 52400591--52400741 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
52400581 TTGAATGATG
*
52400591 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
52400656 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
52400671 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
52400733 TTGAACGAG
64 TTGAACGAG
52400742 TAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:52410036 original size:21 final size:21
Alignment explanation
Indices: 52410006--52410055 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
52409996 CGGGTAGGGA
52410006 ACACGAGCGTGTTCCCAAAGC
1 ACACGAGCGTGTTCCCAAAGC
*
52410027 ACATGAGCGTGTTCCCAAAGC
1 ACACGAGCGTGTTCCCAAAGC
52410048 ACACGAGC
1 ACACGAGC
52410056 ATGTGCTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.30, C:0.32, G:0.24, T:0.14
Consensus pattern (21 bp):
ACACGAGCGTGTTCCCAAAGC
Found at i:52416592 original size:93 final size:93
Alignment explanation
Indices: 52416432--52416605 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 93
52416422 AGGATATTTG
* * *** *
52416432 GGCATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCCTTGAGTTGAGTCCCAGTTCACTGATGGATGCGAACACCCGAACTCGTTCAG
52416497 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* * *
52416525 GGCATCCGAGCTCCTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAACACCCGAGCTCGTTCAG
1 GGCATCCGAACTCCTTGAGTTGAGTCCCAGTTCACTGATGGATGCGAACACCCGAACTCGTTCAG
52416590 TTGAGTCCGAGTTCAT
66 TTGAGTCCGAGTTCAT
52416606 TTATGGACGG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCCTTGAGTTGAGTCCCAGTTCACTGATGGATGCGAACACCCGAACTCGTTCAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:52416612 original size:46 final size:46
Alignment explanation
Indices: 52416434--52416604 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
52416424 GATATTTGGG
* *
52416434 CATCCGAACTCGTTGAGTTGAGTCCCAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAA
** * *
52416480 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATG---CGA-A
* *
52416527 CATCCGAGCTCCTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAA
* * *
52416573 CACCCGAGCTCGTTCAGTTGAGTCCGAGTTCA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
52416605 TTTATGGACG
Statistics
Matches: 103, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 60 0.58
47 30 0.29
48 3 0.03
50 4 0.04
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.27
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGATGGATGCGAA
Found at i:52428991 original size:40 final size:40
Alignment explanation
Indices: 52428936--52429150 Score: 215
Period size: 40 Copynumber: 5.4 Consensus size: 40
52428926 GAGCATTTGA
*
52428936 ATTTTATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTG
1 ATTTTATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
*
52428976 ATTTTATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGT-
1 ATTTTATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTG
** *
52429015 -TGCTATGCCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTTTAT--CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
* * *
52429056 ATTTTTTCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
1 ATTTTATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TG
* * * * * *
52429097 -CTATACCCGGGTTAAGACCTGAAGGCAATTGTGCTTGTG
1 ATTTTATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
* *
52429136 GTTATATCC-GGCTAA
1 ATTTTATCCGGGCTAA
52429151 ATTCCGAAGA
Statistics
Matches: 143, Mismatches: 24, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
38 4 0.03
39 10 0.07
40 121 0.85
41 5 0.03
42 3 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
ATTTTATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
Found at i:52429076 original size:80 final size:80
Alignment explanation
Indices: 52428943--52429150 Score: 328
Period size: 80 Copynumber: 2.6 Consensus size: 80
52428933 TGAATTTTAT
* *
52428943 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTCG
*
52429008 TGCGAGTTGCTATGC
66 TGCGAGTTGCTATAC
* *
52429023 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTTTCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTCG
52429088 TGCGAGTTGCTATAC
66 TGCGAGTTGCTATAC
* * * *
52429103 CCGGGTTAAGACCTGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
52429151 ATTCCGAAGA
Statistics
Matches: 118, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 6 0.05
80 112 0.95
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTTGCTATAC
Found at i:52437148 original size:40 final size:39
Alignment explanation
Indices: 52436925--52437186 Score: 291
Period size: 39 Copynumber: 6.6 Consensus size: 39
52436915 TTGAATGATG
* *
52436925 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
52436963 ATTCGGACTAAGATCCGAAGGCATTTGTGCGAGATT-CTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAG-TTACTAAT
* * *
52437004 TCCGGGCTAAACCCGAAGGCATTTGTGCTAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
52437043 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
52437082 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
52437121 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
52437160 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
52437187 AACGAGGAGC
Statistics
Matches: 194, Mismatches: 22, Indels: 13
0.85 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 125 0.64
40 58 0.30
41 10 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:52437208 original size:79 final size:79
Alignment explanation
Indices: 52436977--52437219 Score: 255
Period size: 78 Copynumber: 3.1 Consensus size: 79
52436967 GGACTAAGAT
* * * ** *
52436977 CCGAAGGCATTTGTGCGAGATTCTAATTCCGGGCTAAACCCGAAGGCATTTGTGCTAGAT-ACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* *
52437041 ATTCCGGGCTAAG-C
65 AATCCGGGTTAAGTC
* ** *
52437055 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
52437120 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
52437134 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* * *
52437196 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAGTC
52437213 CCGAAGG
1 CCGAAGG
52437220 TACGTGATTT
Statistics
Matches: 146, Mismatches: 13, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 73 0.50
79 47 0.32
80 25 0.17
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:52441854 original size:27 final size:27
Alignment explanation
Indices: 52441816--52441994 Score: 148
Period size: 27 Copynumber: 6.6 Consensus size: 27
52441806 TAAATTGTAC
52441816 AGCACTAAGTGTGCGGTTTGACTATGT
1 AGCACTAAGTGTGCGGTTTGACTATGT
* **** *
52441843 TGCACTAAGTGTGCAAAATGAATATG-
1 AGCACTAAGTGTGCGGTTTGACTATGT
* ** *
52441869 ATGCACTAAGTGTGTGAATTGA-TCATGC
1 A-GCACTAAGTGTGCGGTTTGACT-ATGT
*
52441897 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCG-GTTTGACTATGT
* * *
52441925 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGGTTTGACTATGT
* *
52441952 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCG-GTTTGACTATGT
*
52441979 AGCACTGAGTGTGCGG
1 AGCACTAAGTGTGCGG
52441995 GCTCAATATA
Statistics
Matches: 123, Mismatches: 23, Indels: 13
0.77 0.14 0.08
Matches are distributed among these distances:
26 2 0.02
27 99 0.80
28 21 0.17
29 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGTTTGACTATGT
Found at i:52441984 original size:82 final size:81
Alignment explanation
Indices: 52441813--52441994 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
52441803 GATTAAATTG
* *
52441813 TACAGCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCAAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGATGCACTAA
*
52441878 GTGTGTGAATTGATCA
66 GTGTGCGAATTGATCA
* * * ** *
52441894 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGAT-GCACT
* *
52441958 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGATCA
* *
52441976 TATAGCACTGAGTGTGCGG
1 TACAGCACTAAGTGTGCGG
52441995 GCTCAATATA
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCAAAATGAATACGATGCACTAA
GTGTGCGAATTGATCA
Found at i:52448908 original size:46 final size:46
Alignment explanation
Indices: 52448734--52448901 Score: 194
Period size: 46 Copynumber: 3.6 Consensus size: 46
52448724 GTAACCCGCC
* * * *
52448734 CATAAGTGAAATCGGACTCAAATCAACGAGCTCGGGCGTTCGCATA
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATA
* * * *
52448780 CATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAG-TTA
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCATA
*** * *
52448826 CATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATC
1 CATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATA
52448873 CATAAGTGAACTCGGACTCAACTCAACGA
1 CATAAGTGAACTCGGACTCAACTCAACGA
52448902 ATTCGGATGC
Statistics
Matches: 99, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 64 0.65
47 35 0.35
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATA
Found at i:52455020 original size:24 final size:24
Alignment explanation
Indices: 52454988--52455087 Score: 164
Period size: 24 Copynumber: 4.2 Consensus size: 24
52454978 CCAACTCTTG
*
52454988 CTCCTTTATCAGCTCCTAAATCCT
1 CTCCCTTATCAGCTCCTAAATCCT
*
52455012 CTCCCTTATCAGCTCCTAAATCTT
1 CTCCCTTATCAGCTCCTAAATCCT
52455036 CTCCCTTATCAGCTCCTAAATCCT
1 CTCCCTTATCAGCTCCTAAATCCT
* *
52455060 CTCCCTTATCAGCTCTTAAATCTT
1 CTCCCTTATCAGCTCCTAAATCCT
52455084 CTCC
1 CTCC
52455088 GACAGCCTTT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 71 1.00
ACGTcount: A:0.20, C:0.39, G:0.04, T:0.37
Consensus pattern (24 bp):
CTCCCTTATCAGCTCCTAAATCCT
Found at i:52455049 original size:48 final size:48
Alignment explanation
Indices: 52454983--52455087 Score: 183
Period size: 48 Copynumber: 2.2 Consensus size: 48
52454973 GCCGGCCAAC
*
52454983 TCTTGCTCCTTTATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCTAAA
1 TCTT-CTCCCTTATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCTAAA
*
52455032 TCTTCTCCCTTATCAGCTCCTAAATCCTCTCCCTTATCAGCTCTTAAA
1 TCTTCTCCCTTATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCTAAA
52455080 TCTTCTCC
1 TCTTCTCC
52455088 GACAGCCTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
48 50 0.93
49 4 0.07
ACGTcount: A:0.19, C:0.38, G:0.05, T:0.38
Consensus pattern (48 bp):
TCTTCTCCCTTATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCTAAA
Found at i:52465053 original size:8 final size:8
Alignment explanation
Indices: 52465036--52465070 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
52465026 TAAGAGTAGA
*
52465036 CCCATCAT
1 CCCATAAT
52465044 CCCATAAT
1 CCCATAAT
52465052 CCCATAAT
1 CCCATAAT
*
52465060 CCCATGAT
1 CCCATAAT
52465068 CCC
1 CCC
52465071 TTGATCTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.29, C:0.46, G:0.03, T:0.23
Consensus pattern (8 bp):
CCCATAAT
Found at i:52468813 original size:50 final size:48
Alignment explanation
Indices: 52468724--52468868 Score: 164
Period size: 48 Copynumber: 3.0 Consensus size: 48
52468714 GGGTCGATAA
* * * * *
52468724 GATCCCATGTAAGACCATATTTCGGATATGTCATCGGCATCAATATGT
1 GATCCCATGTAAGACCATGTTTGGGATATGGCATTGGCATCAATATGC
* * * * *
52468772 GTTATCCTATGTAAAACCATGTTTGGGACATGGCATTGGCATCGATAAGC
1 G--ATCCCATGTAAGACCATGTTTGGGATATGGCATTGGCATCAATATGC
* *
52468822 GATCCCATGTAAGGCCATGTCTGGGATATGGCATTGGCATCAATATG
1 GATCCCATGTAAGACCATGTTTGGGATATGGCATTGGCATCAATATG
52468869 AGAACATCGT
Statistics
Matches: 78, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
48 40 0.51
50 38 0.49
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTTTGGGATATGGCATTGGCATCAATATGC
Found at i:52468840 original size:48 final size:47
Alignment explanation
Indices: 52468717--52468862 Score: 150
Period size: 50 Copynumber: 3.0 Consensus size: 47
52468707 GACCTTTGGG
* * * *
52468717 TCGATAA-GATCCCATGTAAGACCATATTTCGGATATGTCATCGGCA
1 TCGATAAGGATCCCATGTAAGACCATGTTTGGGATATGGCATTGGCA
* * * * *
52468763 TCAATATGTGTTATCCTATGTAAAACCATGTTTGGGACATGGCATTGGCA
1 TCGATAAG-G--ATCCCATGTAAGACCATGTTTGGGATATGGCATTGGCA
* *
52468813 TCGATAAGCGATCCCATGTAAGGCCATGTCTGGGATATGGCATTGGCA
1 TCGATAAG-GATCCCATGTAAGACCATGTTTGGGATATGGCATTGGCA
52468861 TC
1 TC
52468863 AATATGAGAA
Statistics
Matches: 79, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
46 5 0.06
48 36 0.46
50 38 0.48
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.29
Consensus pattern (47 bp):
TCGATAAGGATCCCATGTAAGACCATGTTTGGGATATGGCATTGGCA
Found at i:52468974 original size:48 final size:48
Alignment explanation
Indices: 52468717--52468980 Score: 159
Period size: 48 Copynumber: 5.5 Consensus size: 48
52468707 GACCTTTGGG
* * * * * *
52468717 TCGATAA--GATCCCATGTAAGACCATATTTCGGATATGTCATCGGCA
1 TCGATAAGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
* * * * *
52468763 TCAATATGTGTTATCCTATGTAAAACCATGTTTGGGACATGGCATTGGCA
1 TCGATAAGTG--ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
* * *
52468813 TCGATAAGCGATCCCATGTAAGGCCATGTCTGGGATATGGCATTGGCA
1 TCGATAAGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
* * * * * * * *
52468861 TCAATATGAGAACATCGTGTAAGATCATAG-CTGGG-CTAT--CAACTTCG-A
1 TCGATAAGTGATC-CCATGTAAGACCAT-GTCTGGGAC-ATGGC-A-TTGGCA
** *
52468909 T--ATGTGTGATCCCATGTAAGACCATGTCTGGGACATTGCATTGGCA
1 TCGATAAGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
* *
52468955 TCGATAAGTGGTCCCATGTAAAACCA
1 TCGATAAGTGATCCCATGTAAGACCA
52468981 CATCCAGGAT
Statistics
Matches: 164, Mismatches: 38, Indels: 30
0.71 0.16 0.13
Matches are distributed among these distances:
44 1 0.01
45 21 0.13
46 16 0.10
47 2 0.01
48 65 0.40
49 20 0.12
50 39 0.24
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (48 bp):
TCGATAAGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
Found at i:52477728 original size:84 final size:84
Alignment explanation
Indices: 52477624--52477877 Score: 508
Period size: 84 Copynumber: 3.0 Consensus size: 84
52477614 CTACACAATG
52477624 AAATAAATACTAGAGAAAGACATAACAATGTTGAACATAACCCAAACAGACCAACAATACTTCCG
1 AAATAAATACTAGAGAAAGACATAACAATGTTGAACATAACCCAAACAGACCAACAATACTTCCG
52477689 TCTATTAGTATGTTTAGCA
66 TCTATTAGTATGTTTAGCA
52477708 AAATAAATACTAGAGAAAGACATAACAATGTTGAACATAACCCAAACAGACCAACAATACTTCCG
1 AAATAAATACTAGAGAAAGACATAACAATGTTGAACATAACCCAAACAGACCAACAATACTTCCG
52477773 TCTATTAGTATGTTTAGCA
66 TCTATTAGTATGTTTAGCA
52477792 AAATAAATACTAGAGAAAGACATAACAATGTTGAACATAACCCAAACAGACCAACAATACTTCCG
1 AAATAAATACTAGAGAAAGACATAACAATGTTGAACATAACCCAAACAGACCAACAATACTTCCG
52477857 TCTATTAGTATGTTTAGCA
66 TCTATTAGTATGTTTAGCA
52477876 AA
1 AA
52477878 TGTTCTCATA
Statistics
Matches: 170, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 170 1.00
ACGTcount: A:0.46, C:0.19, G:0.12, T:0.24
Consensus pattern (84 bp):
AAATAAATACTAGAGAAAGACATAACAATGTTGAACATAACCCAAACAGACCAACAATACTTCCG
TCTATTAGTATGTTTAGCA
Found at i:52480055 original size:21 final size:21
Alignment explanation
Indices: 52480031--52480070 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
52480021 TATACATTTT
* *
52480031 TTCATATTTCCTTTACAAATA
1 TTCACATTTCATTTACAAATA
*
52480052 TTCACATTTCATTTCCAAA
1 TTCACATTTCATTTACAAA
52480071 CATTGTATAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.45
Consensus pattern (21 bp):
TTCACATTTCATTTACAAATA
Found at i:52480295 original size:43 final size:43
Alignment explanation
Indices: 52480196--52480408 Score: 234
Period size: 43 Copynumber: 5.0 Consensus size: 43
52480186 CTCATACAAC
* * * * *
52480196 GCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATA-CGAA
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGAT
* *
52480238 GCCGATGTCCCAGACATGGTCCTACACGTAATCACATATCGAT
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGAT
* * *
52480281 GCCACTGTCCCAGACAGGGTCTTACACGTAATCACATATCAAT
1 GCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGAT
* * * *
52480324 GCCACTGTCCCAGACAGGGTCTTACACGTAAATCATA-AGTGGAT
1 GCCAATGTCCCAGACATGGTCTTACACGT-AATCACATA-TCGAT
* *
52480368 GCCAATGTCCCAGACGTGATCTTACACGGTAA-CACATATCG
1 GCCAATGTCCCAGACATGGTCTTACAC-GTAATCACATATCG
52480409 GATCCTATGT
Statistics
Matches: 145, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.22
43 76 0.52
44 35 0.24
45 2 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (43 bp):
GCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCGAT
Found at i:52480380 original size:87 final size:86
Alignment explanation
Indices: 52480196--52480408 Score: 249
Period size: 87 Copynumber: 2.5 Consensus size: 86
52480186 CTCATACAAC
* * * *
52480196 GCCAATGTCCCAGACGTGGTCTTACATGAAATCAAATA-CGAAGCCGATGTCCCAGACATGGTCC
1 GCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCGAAGCCGATGTCCCAGACAGGGTCC
52480260 TACACGTAATCACATATCGAT
66 TACACGTAATCACATATCGAT
*
52480281 GCCACTGTCCCAGACAG-GGTCTTACACGTAATCACATATC-AATGCC-ACTGTCCCAGACAGGG
1 GCCAATGTCCCAGAC-GTGGTCTTACACGTAATCACATATCGAA-GCCGA-TGTCCCAGACAGGG
* * *
52480343 TCTTACACGTAAATCATA-AGTGGAT
63 TCCTACACGT-AATCACATA-TCGAT
*
52480368 GCCAATGTCCCAGACGTGATCTTACACGGTAA-CACATATCG
1 GCCAATGTCCCAGACGTGGTCTTACAC-GTAATCACATATCG
52480409 GATCCTATGT
Statistics
Matches: 109, Mismatches: 10, Indels: 15
0.81 0.07 0.11
Matches are distributed among these distances:
85 35 0.32
86 29 0.27
87 41 0.38
88 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (86 bp):
GCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCGAAGCCGATGTCCCAGACAGGGTCC
TACACGTAATCACATATCGAT
Found at i:52481343 original size:9 final size:9
Alignment explanation
Indices: 52481329--52481355 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
52481319 TTTATACTCA
52481329 TTTAATAAC
1 TTTAATAAC
52481338 TTTAATAAC
1 TTTAATAAC
52481347 TTTAATAAC
1 TTTAATAAC
52481356 AGTTACGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (9 bp):
TTTAATAAC
Found at i:52484414 original size:50 final size:50
Alignment explanation
Indices: 52484360--52484457 Score: 126
Period size: 50 Copynumber: 2.0 Consensus size: 50
52484350 TGGAACACCA
* * * *
52484360 CATAAATACTTACCTATATGACCAGATATACCAA-GTACATTATATCATTT
1 CATAAATACATACCTATAAGACCAAATATA-CAAGGTACAATATATCATTT
* *
52484410 CATAAGTACATACCTATAAGACCAAATATACAAGGTTCAATATATCAT
1 CATAAATACATACCTATAAGACCAAATATACAAGGTACAATATATCAT
52484458 CACATATGGT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 3 0.07
50 38 0.93
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (50 bp):
CATAAATACATACCTATAAGACCAAATATACAAGGTACAATATATCATTT
Found at i:52484629 original size:35 final size:35
Alignment explanation
Indices: 52484434--52484619 Score: 255
Period size: 35 Copynumber: 5.3 Consensus size: 35
52484424 TATAAGACCA
* **
52484434 AATATACAAGGTTCAATATATCATCACATATGGTTG
1 AATATACAA-ATTCAATATATCATCACATATGGCCG
* * *
52484470 ATTATACGAAATTCAATATATCATCACATATAGCTG
1 AATATAC-AAATTCAATATATCATCACATATGGCCG
*
52484506 AATATACAAATTCAATATACCATCACATATGGCCG
1 AATATACAAATTCAATATATCATCACATATGGCCG
* *
52484541 AATATACAAATTCAATAAATCATCACATATGGCCA
1 AATATACAAATTCAATATATCATCACATATGGCCG
*
52484576 AATATACAAATTCAATATATCATCACATATAGCCG
1 AATATACAAATTCAATATATCATCACATATGGCCG
*
52484611 ATTATACAA
1 AATATACAA
52484620 GGTTCATATA
Statistics
Matches: 134, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
35 97 0.72
36 35 0.26
37 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (35 bp):
AATATACAAATTCAATATATCATCACATATGGCCG
Found at i:52494692 original size:36 final size:36
Alignment explanation
Indices: 52494652--52494725 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
52494642 GCTTGTTCGT
52494652 TATATTGTCTAATATGGTTGTATGCTAATTAATCGG
1 TATATTGTCTAATATGGTTGTATGCTAATTAATCGG
52494688 TATATTGTCTAATATGGTTGTATGCTAATTAATCGG
1 TATATTGTCTAATATGGTTGTATGCTAATTAATCGG
52494724 TA
1 TA
52494726 AGTTTACTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.45
Consensus pattern (36 bp):
TATATTGTCTAATATGGTTGTATGCTAATTAATCGG
Found at i:52494715 original size:16 final size:16
Alignment explanation
Indices: 52494660--52494716 Score: 53
Period size: 18 Copynumber: 3.3 Consensus size: 16
52494650 GTTATATTGT
52494660 CTAATATGGTTGTATG
1 CTAATATGGTTGTATG
*
52494676 CTAATTAATCGG-TATATTG
1 CTAA-T-AT-GGTTGTA-TG
52494695 TCTAATATGGTTGTATG
1 -CTAATATGGTTGTATG
52494712 CTAAT
1 CTAAT
52494717 TAATCGGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
16 9 0.27
17 5 0.15
18 10 0.30
19 5 0.15
20 4 0.12
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (16 bp):
CTAATATGGTTGTATG
Found at i:52500508 original size:55 final size:55
Alignment explanation
Indices: 52500440--52500547 Score: 153
Period size: 55 Copynumber: 2.0 Consensus size: 55
52500430 ACAGGTTCGA
* * * *
52500440 CCACGGGTGTTCCACACGGGCGTGTCACATGCCCGTGTTGTTTTGGCAGGCTCCC
1 CCACGGGTCTTCCACACGGGCATGTCACACGCCCATGTTGTTTTGGCAGGCTCCC
* **
52500495 CCACGGTTCTTCCACACGGGCATGTTGCACGCCCATGTTGTTTTGGCAGGCTC
1 CCACGGGTCTTCCACACGGGCATGTCACACGCCCATGTTGTTTTGGCAGGCTC
52500548 GACCACAGCC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.12, C:0.32, G:0.29, T:0.27
Consensus pattern (55 bp):
CCACGGGTCTTCCACACGGGCATGTCACACGCCCATGTTGTTTTGGCAGGCTCCC
Found at i:52505634 original size:14 final size:14
Alignment explanation
Indices: 52505591--52505641 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
52505581 TTAGTGCTGA
52505591 TTTC-TTCTTCCTAT
1 TTTCTTTCTTCCT-T
* *
52505605 TTT-TTTCCTCCAT
1 TTTCTTTCTTCCTT
52505618 TTTCTTTCTTCCTTT
1 TTTCTTTCTTCC-TT
52505633 TTTCTTTCT
1 TTTCTTTCT
52505642 CTTCTAGCCG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
13 4 0.13
14 16 0.53
15 10 0.33
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTCTTTCTTCCTT
Found at i:52521072 original size:40 final size:40
Alignment explanation
Indices: 52521017--52521241 Score: 238
Period size: 40 Copynumber: 5.6 Consensus size: 40
52521007 CTTGCACAAG
* * * *
52521017 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
52521057 GCCTTTGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
** * *
52521097 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
52521137 GCCTTCGGGTCTTAGCCCAGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
52521177 GCCTT-TGGATCTTAGTCCGGTTATAGTCACCTAGCATAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAT
52521218 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
52521242 CATTCGAATA
Statistics
Matches: 152, Mismatches: 28, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.02
40 121 0.80
41 25 0.16
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:52521130 original size:80 final size:80
Alignment explanation
Indices: 52520981--52521241 Score: 276
Period size: 80 Copynumber: 3.3 Consensus size: 80
52520971 CTCAAGAAAT
* * * * * * * *
52520981 CTTCGGGATTTAG-CGGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
52521044 CACTAGCATAAATGC
66 CACTAGCATAAATGC
* * * *
52521059 CTTTGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
* *
52521123 TCGCTAGCACAAATGC
65 TCACTAGCATAAATGC
* * * * * * * *
52521139 CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACGAATGCCTTTGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
52521204 CACCTAGCATAAAAGC
66 CA-CTAGCATAAATGC
52521220 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
52521242 CATTCGAATA
Statistics
Matches: 148, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
78 11 0.07
79 15 0.10
80 91 0.61
81 31 0.21
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCATAAATGC
Found at i:52521202 original size:120 final size:121
Alignment explanation
Indices: 52521017--52521241 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 121
52521007 CTTGCACAAG
* * * *
52521017 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGCCTTTGGGACTTAGCCCGGATATA
1 GCCTTCGGGTCTTAGCCCAGATATAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCGGATATA
* * **
52521082 GTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
66 GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
* * * *
52521137 GCCTTCGGGTCTTAGCCCAGATATAG-CAACTCGCACGAATGCCTTT-GGATCTTAGTCCGGTTA
1 GCCTTCGGGTCTTAGCCCAGATATAGTC-ACTAGCACAAATGCCTTTGGGA-CTTAGCCCGGATA
*
52521200 TAGTCACCTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
64 TAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
52521242 CATTCGAATA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 4 0.04
120 54 0.61
121 31 0.35
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (121 bp):
GCCTTCGGGTCTTAGCCCAGATATAGTCACTAGCACAAATGCCTTTGGGACTTAGCCCGGATATA
GTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
Found at i:52522472 original size:15 final size:15
Alignment explanation
Indices: 52522452--52522480 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
52522442 AACTTTCAAA
52522452 GCAACATTAAACATT
1 GCAACATTAAACATT
52522467 GCAACATTAAACAT
1 GCAACATTAAACAT
52522481 ACCTTAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
GCAACATTAAACATT
Found at i:52529446 original size:24 final size:21
Alignment explanation
Indices: 52529414--52529465 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 21
52529404 TCGGCTAAAC
52529414 CTTAAAGCACTAAGTGTGCGGATG
1 CTTAAAGCAC--A-TGTGCGGATG
52529438 CTTAAAG--CATGTGCGGATG
1 CTTAAAGCACATGTGCGGATG
52529457 CTTAAAGCA
1 CTTAAAGCA
52529466 TGAATAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
19 17 0.65
20 1 0.04
22 1 0.04
24 7 0.27
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (21 bp):
CTTAAAGCACATGTGCGGATG
Found at i:52529452 original size:19 final size:19
Alignment explanation
Indices: 52529428--52529467 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
52529418 AAGCACTAAG
52529428 TGTGCGGATGCTTAAAGCA
1 TGTGCGGATGCTTAAAGCA
52529447 TGTGCGGATGCTTAAAGCA
1 TGTGCGGATGCTTAAAGCA
52529466 TG
1 TG
52529468 AATAATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.28
Consensus pattern (19 bp):
TGTGCGGATGCTTAAAGCA
Found at i:52532542 original size:40 final size:40
Alignment explanation
Indices: 52532486--52532688 Score: 250
Period size: 40 Copynumber: 5.1 Consensus size: 40
52532476 CGGAATTCAA
* * *
52532486 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
52532526 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
52532566 CCGGATATAGTAACTCTCACGAATGCCTTCAGGACTTATC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
52532606 CCGGATATAATAACTCGCTCAATTGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
52532645 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
52532685 CCGG
1 CCGG
52532689 TTATCATCCG
Statistics
Matches: 139, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.23
40 106 0.76
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:52540034 original size:28 final size:28
Alignment explanation
Indices: 52539958--52540051 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
52539948 AAACAACATG
*
52539958 CAGTAACAGTCTGGGCCTTAGCCCTATA
1 CAGTAACAGTGTGGGCCTTAGCCCTATA
* * *
52539986 AATTATCAGTATAGTCTGGGCCTTAGCCCTATA
1 CAGTAACAG--T-G--TGGGCCTTAGCCCTATA
* * *
52540019 CAGTAACAGTGTGGGCCTAAGCCCAATT
1 CAGTAACAGTGTGGGCCTTAGCCCTATA
52540047 CAGTA
1 CAGTA
52540052 TTAGTACAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
28 25 0.49
30 2 0.04
31 1 0.02
33 23 0.45
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCTATA
Found at i:52550165 original size:93 final size:93
Alignment explanation
Indices: 52550058--52550414 Score: 687
Period size: 93 Copynumber: 3.8 Consensus size: 93
52550048 GCCCATAAGT
* * *
52550058 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
52550123 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
52550151 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
52550216 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
52550244 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
52550309 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
52550337 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
52550402 CGAGTTCGGATGC
66 CGAGTTCGGATGC
52550415 TCAATCATCC
Statistics
Matches: 261, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 261 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:52550172 original size:47 final size:47
Alignment explanation
Indices: 52550104--52550365 Score: 310
Period size: 47 Copynumber: 5.6 Consensus size: 47
52550094 ATCCATAAGT
52550104 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
52550151 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
52550197 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * *
52550244 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
52550290 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
52550337 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
52550366 CATTCGCATC
Statistics
Matches: 181, Mismatches: 16, Indels: 36
0.78 0.07 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
44 2 0.01
45 4 0.02
46 58 0.32
47 87 0.48
48 4 0.02
49 2 0.01
50 8 0.04
51 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:52550411 original size:46 final size:46
Alignment explanation
Indices: 52550050--52550411 Score: 370
Period size: 46 Copynumber: 7.8 Consensus size: 46
52550040 TGTAACCCGC
* * *
52550050 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
52550096 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
52550146 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
52550189 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
52550239 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
52550282 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
52550332 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
52550375 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
52550412 TGCTCAATCA
Statistics
Matches: 262, Mismatches: 27, Indels: 54
0.76 0.08 0.16
Matches are distributed among these distances:
42 6 0.02
43 12 0.05
44 3 0.01
45 6 0.02
46 122 0.47
47 87 0.33
48 6 0.02
49 3 0.01
50 11 0.04
51 6 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.