Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 172 of 284
Found at i:57911753 original size:19 final size:19
Alignment explanation
Indices: 57911719--57911766 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
57911709 TAGGTTGCTT
*
57911719 TGGGCCATGATGGGCCAAGA
1 TGGGCTATGATGGGCCAA-A
*
57911739 TGGGCTATG-TGGGCCTAA
1 TGGGCTATGATGGGCCAAA
57911757 TGGGCCTATG
1 TGGG-CTATG
57911767 GGCCCAAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 5 0.20
19 12 0.48
20 8 0.32
ACGTcount: A:0.19, C:0.19, G:0.40, T:0.23
Consensus pattern (19 bp):
TGGGCTATGATGGGCCAAA
Found at i:57911862 original size:27 final size:27
Alignment explanation
Indices: 57911832--57911911 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
57911822 AATCTCATAT
*
57911832 CTGTAGGCTAGTATTACTGAAATACCC
1 CTGTAGGCTAGAATTACTGAAATACCC
* * *
57911859 CTGTAGGGTAAAATTACTGAAATGCCC
1 CTGTAGGCTAGAATTACTGAAATACCC
*
57911886 CTATAGGAC-AGAATTACTG-AATACCC
1 CTGTAGG-CTAGAATTACTGAAATACCC
57911912 TTGGTTTACA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
26 6 0.14
27 38 0.86
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (27 bp):
CTGTAGGCTAGAATTACTGAAATACCC
Found at i:57911937 original size:27 final size:27
Alignment explanation
Indices: 57911905--57912238 Score: 246
Period size: 27 Copynumber: 12.4 Consensus size: 27
57911895 AGAATTACTG
* **
57911905 AATACCCTTGGTTTACAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
* * *
57911932 AATACCCTCGATTAGAAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
* * **
57911959 AATACCCCTGTTTTGTAAAATTATTAA
1 AATACCCTTGATTTGTAAAATTACCAA
*
57911986 AATATCGC-TGATTTGTAAAATTACCAA
1 AATA-CCCTTGATTTGTAAAATTACCAA
* * *
57912013 AATACCCTTAATTTGTGAAATTA-CAGG
1 AATACCCTTGATTTGTAAAATTACCA-A
57912040 AATACCCTTGATTTGTAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
* * * * *
57912067 AATACCCCTAATTTGGAAAATTATCGA
1 AATACCCTTGATTTGTAAAATTACCAA
*
57912094 AATACCCTTGATTTGGAAAATTA-CAGA
1 AATACCCTTGATTTGTAAAATTACCA-A
** * ** *
57912121 AA-ACTTTTAATTTACAAAATTACGAA
1 AATACCCTTGATTTGTAAAATTACCAA
**
57912147 AATACCCTTGACTTTCAAAAATTA-CAGA
1 AATACCCTTGA-TTTGTAAAATTACCA-A
* * * * * *
57912175 AATAACATTGGTTTGCAAAATTATCGA
1 AATACCCTTGATTTGTAAAATTACCAA
* * *
57912202 AATACCCTTGGTTTGTAGATTTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
*
57912229 AACACCCTTG
1 AATACCCTTG
57912239 TAGGGTGAAA
Statistics
Matches: 240, Mismatches: 57, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
26 23 0.10
27 193 0.80
28 24 0.10
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
AATACCCTTGATTTGTAAAATTACCAA
Found at i:57914743 original size:27 final size:27
Alignment explanation
Indices: 57914701--57914763 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
57914691 ATATGCTAGT
*
57914701 ATTACTAAAATACCCCTGTAGGGTAGA
1 ATTACTGAAATACCCCTGTAGGGTAGA
* *
57914728 ATTACTGAAATGCCCCTTTAGGGTAGA
1 ATTACTGAAATACCCCTGTAGGGTAGA
57914755 ATTACTGAA
1 ATTACTGAA
57914764 TATCCTTGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (27 bp):
ATTACTGAAATACCCCTGTAGGGTAGA
Found at i:57914861 original size:27 final size:27
Alignment explanation
Indices: 57914770--57914862 Score: 89
Period size: 27 Copynumber: 3.4 Consensus size: 27
57914760 TGAATATCCT
* * *
57914770 TGATTTAAAAAATTACGAAAATA-CTC
1 TGATTTATAAAATTACCAAAATACCCC
* * * *
57914796 TCAATTAGCAAAATTACCAAAATACCCT
1 TGATTTA-TAAAATTACCAAAATACCCC
* *
57914824 TGACTTGTAAAATTACCAAAATACCCC
1 TGATTTATAAAATTACCAAAATACCCC
57914851 TGATTTATAAAA
1 TGATTTATAAAA
57914863 ATACTCCTGA
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
26 5 0.10
27 42 0.81
28 5 0.10
ACGTcount: A:0.46, C:0.18, G:0.06, T:0.29
Consensus pattern (27 bp):
TGATTTATAAAATTACCAAAATACCCC
Found at i:57915089 original size:25 final size:23
Alignment explanation
Indices: 57915061--57915114 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
57915051 TTACTTGGCA
57915061 GTGTTGTTGCGATGTTTACAGCTAT
1 GTGTTGTT-C-ATGTTTACAGCTAT
* *
57915086 GTGTTG-TCCTGTTTACGGCTAT
1 GTGTTGTTCATGTTTACAGCTAT
57915108 GTGTTGT
1 GTGTTGT
57915115 CTTGTCTACA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 18 0.69
23 1 0.04
24 1 0.04
25 6 0.23
ACGTcount: A:0.11, C:0.13, G:0.30, T:0.46
Consensus pattern (23 bp):
GTGTTGTTCATGTTTACAGCTAT
Found at i:57915098 original size:22 final size:22
Alignment explanation
Indices: 57915073--57915125 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
57915063 GTTGTTGCGA
57915073 TGTTTACAGCTATGTGTTGTCC
1 TGTTTACAGCTATGTGTTGTCC
* *
57915095 TGTTTACGGCTATGTGTTGTCT
1 TGTTTACAGCTATGTGTTGTCC
*
57915117 TGTCTACAG
1 TGTTTACAG
57915126 TGTTGAGCCG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.13, C:0.17, G:0.25, T:0.45
Consensus pattern (22 bp):
TGTTTACAGCTATGTGTTGTCC
Found at i:57919788 original size:23 final size:23
Alignment explanation
Indices: 57919756--57919858 Score: 111
Period size: 23 Copynumber: 4.5 Consensus size: 23
57919746 GAGCTAATAG
57919756 ACAGTAAGCTCTATTGAGCTGAA
1 ACAGTAAGCTCTATTGAGCTGAA
* * *
57919779 ATAGTAAGCTTTATCGAGCTG-A
1 ACAGTAAGCTCTATTGAGCTGAA
*
57919801 ACAGTAAGCTCGTA-TAAGCTGAA
1 ACAGTAAGCTC-TATTGAGCTGAA
* * *
57919824 ACGGTAAGCTCCAATGAGCTGAA
1 ACAGTAAGCTCTATTGAGCTGAA
*
57919847 ATAGTAAGCTCT
1 ACAGTAAGCTCT
57919859 TAAGAGCTGA
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
22 16 0.25
23 48 0.75
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.25
Consensus pattern (23 bp):
ACAGTAAGCTCTATTGAGCTGAA
Found at i:57925100 original size:16 final size:16
Alignment explanation
Indices: 57925081--57925112 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
57925071 GTCGAAACGT
*
57925081 TGAAATGCCGAAAAGC
1 TGAAATGCCAAAAAGC
57925097 TGAAATGCCAAAAAGC
1 TGAAATGCCAAAAAGC
57925113 CAAAAGTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (16 bp):
TGAAATGCCAAAAAGC
Found at i:57925384 original size:29 final size:29
Alignment explanation
Indices: 57925328--57925442 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
57925318 GTGAGCATGA
* *
57925328 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
57925356 ATATAAATGTGATTTGGGCCTAATTGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
57925385 ATAT-ACTGGTGATTTGGGCCAAATGGGCC
1 ATATGAAT-GTGATTTGGGCCTAATGGGCC
* **
57925414 ATATGAATATGA-TTGGGTTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
57925442 A
1 A
57925443 GATATAGGTA
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
28 27 0.38
29 43 0.60
30 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:57931288 original size:27 final size:28
Alignment explanation
Indices: 57931250--57931314 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
57931240 TAGCCTTCTC
*
57931250 AATCATGAAACCCTA-GGTCCCATAAAT
1 AATCATGAAACCCTAGGGCCCCATAAAT
57931277 AATCATGAAACCCTAGGGCCCCATAAAT
1 AATCATGAAACCCTAGGGCCCCATAAAT
57931305 AATCATGAAA
1 AATCATGAAA
57931315 ATAGCTAGAG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 15 0.42
28 21 0.58
ACGTcount: A:0.43, C:0.25, G:0.12, T:0.20
Consensus pattern (28 bp):
AATCATGAAACCCTAGGGCCCCATAAAT
Found at i:57935533 original size:26 final size:27
Alignment explanation
Indices: 57935458--57935533 Score: 93
Period size: 26 Copynumber: 2.9 Consensus size: 27
57935448 CACCAATATA
*
57935458 GCAACAAAGCTGCCAGTAATAAT-ATC
1 GCAACAAAGCTGCCAGTAATAGTAATC
* *
57935484 GCAACAAAGCTTCCAGTAACAGTAAT-
1 GCAACAAAGCTGCCAGTAATAGTAATC
* *
57935510 GCAGCAAAGCTGCCAGTATTAGTA
1 GCAACAAAGCTGCCAGTAATAGTA
57935534 TATGTGGCAA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 40 0.95
27 2 0.05
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.20
Consensus pattern (27 bp):
GCAACAAAGCTGCCAGTAATAGTAATC
Found at i:57935552 original size:27 final size:27
Alignment explanation
Indices: 57935496--57935614 Score: 168
Period size: 27 Copynumber: 4.4 Consensus size: 27
57935486 AACAAAGCTT
** **
57935496 CCAGTAACAGTA-ATGCAGCAAAGCTG
1 CCAGTAACAGTATATGTGGCAAAGCCA
**
57935522 CCAGTATTAGTATATGTGGCAAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
57935549 CCAGTAACAGTATATGTGGCAAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
*
57935576 CTAGTAACAGTATATGTGGCAAAGCCA
1 CCAGTAACAGTATATGTGGCAAAGCCA
57935603 CCAGTAACAGTA
1 CCAGTAACAGTA
57935615 CACTTCCTCC
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 10 0.12
27 72 0.88
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (27 bp):
CCAGTAACAGTATATGTGGCAAAGCCA
Found at i:57945768 original size:8 final size:8
Alignment explanation
Indices: 57945757--57945797 Score: 64
Period size: 8 Copynumber: 5.1 Consensus size: 8
57945747 GGCCATTCTC
57945757 TCGGCTTT
1 TCGGCTTT
57945765 TCGGCTTT
1 TCGGCTTT
*
57945773 TCAGCTTT
1 TCGGCTTT
*
57945781 TCAGCTTT
1 TCGGCTTT
57945789 TCGGCTTT
1 TCGGCTTT
57945797 T
1 T
57945798 GCCGTTCTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.05, C:0.24, G:0.20, T:0.51
Consensus pattern (8 bp):
TCGGCTTT
Found at i:57951631 original size:49 final size:50
Alignment explanation
Indices: 57951551--57951792 Score: 272
Period size: 49 Copynumber: 4.9 Consensus size: 50
57951541 ATCTATTATG
* * *
57951551 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
* * * *
57951601 -GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAA-TT
* * * * * **
57951651 CGATTACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
*
57951701 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
* * * * * *
57951751 -GGTCCCATGTGTAGGACTAAGTGCAAGCTACTATGCGTACCA
1 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCA
57951793 TATAGCTTTG
Statistics
Matches: 161, Mismatches: 29, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
49 76 0.47
50 48 0.30
51 37 0.23
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
Found at i:57951748 original size:101 final size:100
Alignment explanation
Indices: 57951556--57951792 Score: 289
Period size: 100 Copynumber: 2.4 Consensus size: 100
57951546 TTATGAGGTC
* *
57951556 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAA
* *
57951621 GTGTAGGCTACTATGCGTACCCGATAACTTCGATT
66 GTGTAGGCTACTACGCGTACCAGATAACTTCGATT
* * ** *
57951656 ACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACATGTGTAGTACTA
* * *
57951721 AGTGTAGGCTACTACGTGTACCAGATAA-TT-GGTC
65 AGTGTAGGCTACTACGCGTACCAGATAACTTCGATT
* * * * * *
57951755 CCATGTGTAGGACTAAGTGCAAGCTACTATGCGTACCA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
57951793 TATAGCTTTG
Statistics
Matches: 116, Mismatches: 20, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
99 32 0.28
100 42 0.36
101 42 0.36
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (100 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACTAA
GTGTAGGCTACTACGCGTACCAGATAACTTCGATT
Found at i:57953764 original size:20 final size:19
Alignment explanation
Indices: 57953732--57953769 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
57953722 GTTACTCGAA
57953732 ATGATTGACATGATTGAAAT
1 ATGATTGACATGA-TGAAAT
57953752 ATGATTG-CTATGATGAAA
1 ATGATTGAC-ATGATGAAA
57953770 ACTGTGTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.39, C:0.05, G:0.21, T:0.34
Consensus pattern (19 bp):
ATGATTGACATGATGAAAT
Found at i:57962876 original size:150 final size:150
Alignment explanation
Indices: 57961851--57962839 Score: 1908
Period size: 150 Copynumber: 6.6 Consensus size: 150
57961841 ATCTATTGTG
*
57961851 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTTGCATGTGTAGT
1 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTTGCATGTGTAGT
57961916 ACAAAGTGCAGGCTACTATGCGTAGCCGGTAACTTCGATCACTTGTGTAGTACTAAGTGCATGCT
66 ACAAAGTGCAGGCTACTATGCGTAGCCGGTAACTTCGATCACTTGTGTAGTACTAAGTGCATGCT
57961981 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
57962001 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTTGCATGTGTAGT
1 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTTGCATGTGTAGT
57962066 ACAAAGTGCAGGCTACTATGCGTAGCCGGTAACTTCGATCACTTGTGTAGTACTAAGTGCATGCT
66 ACAAAGTGCAGGCTACTATGCGTAGCCGGTAACTTCGATCACTTGTGTAGTACTAAGTGCATGCT
57962131 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
57962151 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTTGCATGTGTAGT
1 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTTGCATGTGTAGT
57962216 ACAAAGTGCAGGCTACTATGCGTAGCCGGTAACTTCGATCACTTGTGTAGTACTAAGTGCATGCT
66 ACAAAGTGCAGGCTACTATGCGTAGCCGGTAACTTCGATCACTTGTGTAGTACTAAGTGCATGCT
57962281 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
57962301 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTTGCATGTGTAGT
1 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTTGCATGTGTAGT
57962366 ACAAAGTGCAGGCTACTATGCGTAGCCGGTAACTTCGATCACTTGTGTAGTACTAAGTGCATGCT
66 ACAAAGTGCAGGCTACTATGCGTAGCCGGTAACTTCGATCACTTGTGTAGTACTAAGTGCATGCT
57962431 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
57962451 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTTGCATGTGTAGT
1 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTTGCATGTGTAGT
57962516 ACAAAGTGCAGGCTACTATGCGTAGCCGGTAACTTCGATCACTTGTGTAGTACTAAGTGCATGCT
66 ACAAAGTGCAGGCTACTATGCGTAGCCGGTAACTTCGATCACTTGTGTAGTACTAAGTGCATGCT
57962581 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
57962601 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTTGCATGTGTAGT
1 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTTGCATGTGTAGT
57962666 ACAAAGTGCAGGCTACTATGCGTAGCCGGTAACTTCGATCACTTGTGTAGTACTAAGTGCATGCT
66 ACAAAGTGCAGGCTACTATGCGTAGCCGGTAACTTCGATCACTTGTGTAGTACTAAGTGCATGCT
57962731 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
* * *
57962751 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTA-CTGAATAATTGGTCGCATGTATAG
1 AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAG-ATAATTGGTTGCATGTGTAG
* *
57962815 TACTAAGTGCAGGCTACTGTGCGTA
65 TACAAAGTGCAGGCTACTATGCGTA
57962840 CCAGATAGCT
Statistics
Matches: 832, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
149 2 0.00
150 830 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (150 bp):
AGGTCACGTGCGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTTGCATGTGTAGT
ACAAAGTGCAGGCTACTATGCGTAGCCGGTAACTTCGATCACTTGTGTAGTACTAAGTGCATGCT
ACTACGTGTATCAGATGGTT
Found at i:57965630 original size:24 final size:24
Alignment explanation
Indices: 57965603--57965648 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
57965593 TATTTGCAAC
57965603 AATGCTGCAAACTGTATTTACAGA
1 AATGCTGCAAACTGTATTTACAGA
* **
57965627 AATGTTGTGAACTGTATTTACA
1 AATGCTGCAAACTGTATTTACA
57965649 AAAACGCCAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (24 bp):
AATGCTGCAAACTGTATTTACAGA
Found at i:57965862 original size:30 final size:30
Alignment explanation
Indices: 57965826--57965885 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
57965816 ACCATGAGAT
57965826 TGTAAAATCTCAAAACTATAAGGTTTTCGC
1 TGTAAAATCTCAAAACTATAAGGTTTTCGC
*
57965856 TGTAAAATCTCAAAAGTATAAGGTTTTCGC
1 TGTAAAATCTCAAAACTATAAGGTTTTCGC
57965886 ACCTCAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (30 bp):
TGTAAAATCTCAAAACTATAAGGTTTTCGC
Found at i:57967077 original size:25 final size:25
Alignment explanation
Indices: 57967043--57967090 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
57967033 AAATACCCTT
57967043 CCACACTTAAGATGTACATTGCCTC
1 CCACACTTAAGATGTACATTGCCTC
57967068 CCACACTTAAGATGTACATTGCC
1 CCACACTTAAGATGTACATTGCC
57967091 CTCAATGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.27
Consensus pattern (25 bp):
CCACACTTAAGATGTACATTGCCTC
Found at i:57975589 original size:13 final size:13
Alignment explanation
Indices: 57975571--57975602 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
57975561 AAATTTTATC
57975571 ATTTGAGTGCTTA
1 ATTTGAGTGCTTA
57975584 ATTTGAGTGCTTA
1 ATTTGAGTGCTTA
57975597 ATTTGA
1 ATTTGA
57975603 TAAAAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.25, C:0.06, G:0.22, T:0.47
Consensus pattern (13 bp):
ATTTGAGTGCTTA
Found at i:57976068 original size:21 final size:20
Alignment explanation
Indices: 57976036--57976076 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
57976026 ATAAGCATGT
57976036 ATTTTGATGTTTGATGATAG
1 ATTTTGATGTTTGATGATAG
57976056 ATTTTGAATGTTTGATGATAG
1 ATTTTG-ATGTTTGATGATAG
57976077 TTATACAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (20 bp):
ATTTTGATGTTTGATGATAG
Found at i:57980203 original size:47 final size:47
Alignment explanation
Indices: 57980143--57980264 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
57980133 GCATTGGCAC
*
57980143 TAAGACAAGGATACCATGTAAGACCATGTTTGGTACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
57980190 TAAGACAAAGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
57980237 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
57980265 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:57981370 original size:27 final size:26
Alignment explanation
Indices: 57981333--57981398 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
57981323 AGCATGGCTG
*
57981333 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
57981359 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
57981386 CCAGAATCAGATA
1 CCAGAA-CAGATA
57981399 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:57981403 original size:27 final size:27
Alignment explanation
Indices: 57981333--57981415 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
57981323 AGCATGGCTG
* *
57981333 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
57981359 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
* *
57981386 CCAGAATCAGATAATGTGGCAAAACCA
1 CCAGAATCAGATAATGTGGCAGAGCCA
57981413 CCA
1 CCA
57981416 AACAGAATAC
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 39 0.83
28 3 0.06
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.16
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:57981619 original size:22 final size:22
Alignment explanation
Indices: 57981571--57981629 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
57981561 GTAAATACGT
*
57981571 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
57981593 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
57981615 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
57981630 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:57981796 original size:27 final size:26
Alignment explanation
Indices: 57981717--57981799 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
57981707 TCGATCGGTC
* * *
57981717 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
57981743 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
57981770 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
57981797 AAC
1 AAC
57981800 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:57982061 original size:27 final size:27
Alignment explanation
Indices: 57982017--57982185 Score: 223
Period size: 27 Copynumber: 6.3 Consensus size: 27
57982007 ACCCCACAAT
*
57982017 GGTATCTTCGGTAATTCTACCCTACAGG
1 GGTAT-TTCGATAATTCTACCCTACAGG
* * *
57982045 GGTATTTCGATATTTCTACCCCACAAG
1 GGTATTTCGATAATTCTACCCTACAGG
57982072 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* * * *
57982099 GGTATTTTGGTAATTCTATCCTATA-G
1 GGTATTTCGATAATTCTACCCTACAGG
* *
57982125 GGTATTTCAATAATTCTACCCTATAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
57982152 GGTATTTCGAAAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
57982179 GGTATTT
1 GGTATTT
57982186 TAGTAATTTC
Statistics
Matches: 122, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
26 22 0.18
27 95 0.78
28 5 0.04
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTATTTCGATAATTCTACCCTACAGG
Found at i:57982143 original size:80 final size:81
Alignment explanation
Indices: 57982017--57982193 Score: 248
Period size: 80 Copynumber: 2.2 Consensus size: 81
57982007 ACCCCACAAT
* * *
57982017 GGTATCTTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCCACAAGGGTATTTCGA
1 GGTAT-TTTGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCCACAAGGGTATTTCGA
*
57982082 TAATTCTACCCTACAGG
65 AAATTCTACCCTACAGG
* * * * *
57982099 GGTATTTTGGTAATTCTATCCTATA-GGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGAA
1 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCCACAAGGGTATTTCGAA
57982163 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
*
57982179 GGTATTTTAGTAATT
1 GGTATTTTGGTAATT
57982194 TCACAATCAA
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 63 0.74
81 17 0.20
82 5 0.06
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (81 bp):
GGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCCACAAGGGTATTTCGAA
AATTCTACCCTACAGG
Found at i:57982153 original size:53 final size:53
Alignment explanation
Indices: 57982028--57982185 Score: 208
Period size: 53 Copynumber: 2.9 Consensus size: 53
57982018 GTATCTTCGG
* * *
57982028 TAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCCACAAGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTA-AAGGGTATTTCAA
* * * *
57982082 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTAAAGGGTATTTCAA
* * *
57982135 TAATTCTACCCTATAGGGGTATTTCGAAAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTA-AAGGGTATTT
57982186 TAGTAATTTC
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 46 0.52
54 43 0.48
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (53 bp):
TAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTAAAGGGTATTTCAA
Found at i:57982228 original size:27 final size:27
Alignment explanation
Indices: 57982198--57983471 Score: 1646
Period size: 27 Copynumber: 47.2 Consensus size: 27
57982188 GTAATTTCAC
* *
57982198 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * * *
57982225 AATCGAGGATAAAATGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
57982252 AA-CTGAGGGTAAACCAGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
57982279 AATCAAGCGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57982306 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
57982333 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57982360 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
57982387 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
57982414 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
57982441 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
57982468 AA-CTGAGGGTAAACCAGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
57982495 AATCAAGCGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57982522 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
57982549 AATCGAGGGTAAAACATTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
57982576 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57982603 AATCGGGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57982630 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
57982657 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57982684 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
57982711 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57982738 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
57982765 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57982792 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
57982819 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57982846 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
57982873 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57982900 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
57982927 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57982954 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
57982981 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57983008 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
57983035 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57983062 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
57983089 AATTGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
57983116 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
57983143 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
57983170 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
57983197 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *** *
57983224 AATCAAGGGTAAAATAATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57983251 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
57983278 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
57983305 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
57983332 AATCGAGGGTAAAACATTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
57983359 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57983386 AATCGGGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
57983413 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
57983440 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
57983467 AATCG
1 AATCG
57983472 GGAGTACTTT
Statistics
Matches: 1100, Mismatches: 113, Indels: 68
0.86 0.09 0.05
Matches are distributed among these distances:
26 16 0.01
27 1068 0.97
28 16 0.01
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:57985578 original size:20 final size:20
Alignment explanation
Indices: 57985534--57985579 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
57985524 AATTTGTTAA
*
57985534 AGGTGGTTTCAGTTTTGGAAG
1 AGGTGGTTTCAATTTT-GAAG
57985555 -GGTGGTTTCAATTTT-AAG
1 AGGTGGTTTCAATTTTGAAG
57985573 CAGGTGG
1 -AGGTGG
57985580 GTGAGTAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 3 0.14
20 19 0.86
ACGTcount: A:0.20, C:0.07, G:0.37, T:0.37
Consensus pattern (20 bp):
AGGTGGTTTCAATTTTGAAG
Found at i:57995047 original size:13 final size:13
Alignment explanation
Indices: 57995029--57995053 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57995019 CTCGGCAGGG
57995029 ACATGCCCGTGTA
1 ACATGCCCGTGTA
57995042 ACATGCCCGTGT
1 ACATGCCCGTGT
57995054 GCGATTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.32, G:0.24, T:0.24
Consensus pattern (13 bp):
ACATGCCCGTGTA
Found at i:58000420 original size:18 final size:19
Alignment explanation
Indices: 58000397--58000440 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
58000387 AACAAAGTTG
58000397 GGGGAAAGGAA-GAAGAAA
1 GGGGAAAGGAAGGAAGAAA
58000415 GGGG-AA-GAAGGGAAGAAA
1 GGGGAAAGGAA-GGAAGAAA
58000433 -GGGAAAGG
1 GGGGAAAGG
58000441 GGATTGGCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
16 3 0.14
17 5 0.23
18 13 0.59
19 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (19 bp):
GGGGAAAGGAAGGAAGAAA
Found at i:58011311 original size:40 final size:39
Alignment explanation
Indices: 58011215--58011332 Score: 121
Period size: 40 Copynumber: 3.0 Consensus size: 39
58011205 ATAATGGAGA
* *
58011215 ATTATATCCGGGCT-AAGTCCCAAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAAGTCCCGAAGGC-TTTGTGCTGGT
* * * *
58011254 GTTATATCTGGGCTAAAGTCCCGTAGGCTTTGTGTTGGT
1 ATTATATCCGGGCTAAAGTCCCGAAGGCTTTGTGCTGGT
* * * *
58011293 ATTATATCCGGGCTTAAAGTCCTGCATGCTTTGTGGTGGT
1 ATTATATCCGGGC-TAAAGTCCCGAAGGCTTTGTGCTGGT
58011333 GATTGGATTT
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
39 32 0.49
40 33 0.51
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.35
Consensus pattern (39 bp):
ATTATATCCGGGCTAAAGTCCCGAAGGCTTTGTGCTGGT
Found at i:58012989 original size:75 final size:75
Alignment explanation
Indices: 58012900--58013048 Score: 280
Period size: 75 Copynumber: 2.0 Consensus size: 75
58012890 CATGGATACT
*
58012900 TGGCCAAAGTGGCAATTATCTAGGAATGATTTCTTGAAAATTTGAAATAATCGATCTATAAGTAA
1 TGGCCAAAGTGGCAATTAGCTAGGAATGATTTCTTGAAAATTTGAAATAATCGATCTATAAGTAA
58012965 ATTAATTGTC
66 ATTAATTGTC
*
58012975 TGGCCAAAGTGGCAATTAGCTAGGAATGATTTCTTGAAAATTTGAAATAATCGATTTATAAGTAA
1 TGGCCAAAGTGGCAATTAGCTAGGAATGATTTCTTGAAAATTTGAAATAATCGATCTATAAGTAA
58013040 ATTAATTGT
66 ATTAATTGT
58013049 TTGCATTGCT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (75 bp):
TGGCCAAAGTGGCAATTAGCTAGGAATGATTTCTTGAAAATTTGAAATAATCGATCTATAAGTAA
ATTAATTGTC
Found at i:58013348 original size:109 final size:109
Alignment explanation
Indices: 58013157--58013375 Score: 420
Period size: 109 Copynumber: 2.0 Consensus size: 109
58013147 GATATCATCA
58013157 CTCTATCGAGTCATTATATGAGTTGAGAAGATTGTATATCATCATGGTTTAAGGCATGTATAGGA
1 CTCTATCGAGTCATTATATGAGTTGAGAAGATTGTATATCATCATGGTTTAAGGCATGTATAGGA
58013222 TAGACTATAGGTAGAATGATATTTCGACTTTATATACATTATAG
66 TAGACTATAGGTAGAATGATATTTCGACTTTATATACATTATAG
* *
58013266 CTCTATCGAGTCATTATGTGAGTTGAGAAGATTGTGTATCATCATGGTTTAAGGCATGTATAGGA
1 CTCTATCGAGTCATTATATGAGTTGAGAAGATTGTATATCATCATGGTTTAAGGCATGTATAGGA
58013331 TAGACTATAGGTAGAATGATATTTCGACTTTATATACATTATAG
66 TAGACTATAGGTAGAATGATATTTCGACTTTATATACATTATAG
58013375 C
1 C
58013376 CATGCGAAGA
Statistics
Matches: 108, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
109 108 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.37
Consensus pattern (109 bp):
CTCTATCGAGTCATTATATGAGTTGAGAAGATTGTATATCATCATGGTTTAAGGCATGTATAGGA
TAGACTATAGGTAGAATGATATTTCGACTTTATATACATTATAG
Found at i:58017807 original size:39 final size:39
Alignment explanation
Indices: 58017749--58017925 Score: 221
Period size: 39 Copynumber: 4.5 Consensus size: 39
58017739 ATGTGAGATA
* *
58017749 TATATCCGGGCTAATTCCCGAAGGCATTCGTACTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
58017788 TATATCCGAGCTAAGTCCCGAAGGCGTTCGTGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
58017827 TATATCCGGGCTACGTCCCGAATGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
58017866 TATATCCGGGCTAAGTCCTGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
58017904 TACATCTGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
58017926 CATGCTTTGT
Statistics
Matches: 118, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
38 20 0.17
39 91 0.77
40 7 0.06
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:58030441 original size:42 final size:42
Alignment explanation
Indices: 58030382--58030544 Score: 159
Period size: 42 Copynumber: 3.9 Consensus size: 42
58030372 TCGGCATTAG
* *
58030382 TATGAG-TTATCATGTAAGACCATATCTGGGATATGGCGTGGA
1 TATGAGATT-TCATGTAAGACCATATCTGGGACATGGCGTCGA
* * **
58030424 TATGAGATTT-ACGGTAAGAGCACGTCTGGGACATGGCGTCGA
1 TATGAGATTTCA-TGTAAGACCATATCTGGGACATGGCGTCGA
* * * * * *
58030466 AACGAGAATTCATATAAGACCATATCTGGGATATGGCATCGA
1 TATGAGATTTCATGTAAGACCATATCTGGGACATGGCGTCGA
* * *
58030508 TGTGAGATCTCATGTAAGACCATGTCTGGGACATGGC
1 TATGAGATTTCATGTAAGACCATATCTGGGACATGGC
58030545 ATTGGCATCT
Statistics
Matches: 94, Mismatches: 24, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
41 1 0.01
42 90 0.96
43 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (42 bp):
TATGAGATTTCATGTAAGACCATATCTGGGACATGGCGTCGA
Found at i:58030495 original size:84 final size:84
Alignment explanation
Indices: 58030391--58030544 Score: 220
Period size: 84 Copynumber: 1.8 Consensus size: 84
58030381 GTATGAGTTA
* * * * *
58030391 TCATGTAAGACCATATCTGGGATATGGCGTGGATATGAGAT-TTACGGTAAGAGCACGTCTGGGA
1 TCATATAAGACCATATCTGGGATATGGCATCGATATGAGATCTCA-GGTAAGACCACGTCTGGGA
58030455 CATGGCGTCGAAACGAGAAT
65 CATGGCGTCGAAACGAGAAT
* * *
58030475 TCATATAAGACCATATCTGGGATATGGCATCGATGTGAGATCTCATGTAAGACCATGTCTGGGAC
1 TCATATAAGACCATATCTGGGATATGGCATCGATATGAGATCTCAGGTAAGACCACGTCTGGGAC
58030540 ATGGC
66 ATGGC
58030545 ATTGGCATCT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
84 59 0.97
85 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (84 bp):
TCATATAAGACCATATCTGGGATATGGCATCGATATGAGATCTCAGGTAAGACCACGTCTGGGAC
ATGGCGTCGAAACGAGAAT
Found at i:58034410 original size:161 final size:161
Alignment explanation
Indices: 58034137--58034479 Score: 544
Period size: 161 Copynumber: 2.1 Consensus size: 161
58034127 TTGAGTTTAC
**
58034137 TAAAATTACTGAAATACCC-CCAATTGTAAAATTACCAAAGTACCCCCAGTTTATAAAATTACCG
1 TAAAATTACTGAAATACCCTTGAATTGTAAAATTACCAAAGTACCCCCAGTTTATAAAATTACCG
* * * *
58034201 AAATACCATCGATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAG
66 AAATACCATCGATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCAA
*
58034266 TTTGCAAAATTACTGAAATACCCTTGATTTG
131 TTTGCAAAATTACTGAAATACCCTCGATTTG
* * *
58034297 TAAAATTACTGAAATACCCTTGACTTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTATCG
1 TAAAATTACTGAAATACCCTTGAATTGTAAAATTACCAAAGTACCCCCAGTTTATAAAATTACCG
* * * *
58034362 AAATATCGTCGATTGTAAAATTACTAAAATACCCTCAATTTTTAAAATTACCGAAATACCCTTAA
66 AAATACCATCGATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCAA
*
58034427 TTTGCAAAATTTCTGAAATACCCTCGATTTG
131 TTTGCAAAATTACTGAAATACCCTCGATTTG
58034458 TAAAATTACTGAAATACCCTTG
1 TAAAATTACTGAAATACCCTTG
58034480 TCGGGTAGAA
Statistics
Matches: 167, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
160 19 0.11
161 148 0.89
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (161 bp):
TAAAATTACTGAAATACCCTTGAATTGTAAAATTACCAAAGTACCCCCAGTTTATAAAATTACCG
AAATACCATCGATTGTAAAATTACTAAAATACCCTCAATTTGTAAAATTACCGAAATACCCTCAA
TTTGCAAAATTACTGAAATACCCTCGATTTG
Found at i:58034423 original size:27 final size:27
Alignment explanation
Indices: 58034137--58034477 Score: 340
Period size: 27 Copynumber: 12.7 Consensus size: 27
58034127 TTGAGTTTAC
* *
58034137 TAAAATTACTGAAATACCC-CCAATTG
1 TAAAATTACTGAAATACCCTCGATTTG
* * *
58034163 TAAAATTAC-CAAAGTACCC-CCAGTTTA
1 TAAAATTACTGAAA-TACCCTCGA-TTTG
* *
58034190 TAAAATTACCGAAATACCATCGA-TTG
1 TAAAATTACTGAAATACCCTCGATTTG
58034216 TAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
58034243 TAAAATTA-TCGAAATACCCTC-AGTTTG
1 TAAAATTACT-GAAATACCCTCGA-TTTG
* *
58034270 CAAAATTACTGAAATACCCTTGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *
58034297 TAAAATTACTGAAATACCCTTGACTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* * * *
58034324 TAAAATTAC-CAAAGTACCCCCGGTTTA
1 TAAAATTACTGAAA-TACCCTCGATTTG
* *
58034351 TAAAATTA-TCGAAATATCGTCGA-TTG
1 TAAAATTACT-GAAATACCCTCGATTTG
* * *
58034377 TAAAATTACTAAAATACCCTCAATTTT
1 TAAAATTACTGAAATACCCTCGATTTG
* **
58034404 TAAAATTACCGAAATACCCTTAATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *
58034431 CAAAATTTCTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
58034458 TAAAATTACTGAAATACCCT
1 TAAAATTACTGAAATACCCT
58034478 TGTCGGGTAG
Statistics
Matches: 260, Mismatches: 41, Indels: 27
0.79 0.12 0.08
Matches are distributed among these distances:
25 3 0.01
26 64 0.25
27 183 0.70
28 10 0.04
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:58034491 original size:27 final size:27
Alignment explanation
Indices: 58034461--58035006 Score: 504
Period size: 27 Copynumber: 20.1 Consensus size: 27
58034451 CGATTTGTAA
* * *
58034461 AATTACTGAAATACCCTTGTCGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** ** *
58034488 AATT-CTAAAATACCATTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
58034514 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * **
58034541 AAATACCAAAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
58034568 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
58034595 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
58034622 AATTACTGGAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
58034649 AATTACCGAAATACACCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
58034676 AATTACTGAAATACCCCTATAAGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
58034703 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** * *
58034730 AATT-CCCATTTTGCCCCTAGGGT-GTGATAG
1 AATTACCGA-AATACCCCT---GTAG-GGTAG
* * * *
58034760 AAATACCAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
58034787 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
58034814 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
58034841 AATTACTGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
58034868 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
58034895 AATTACTGGAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
58034922 AATTACCGAAATACACCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
58034949 AATTACTGAAATACCCCTATAAGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
58034976 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
58035003 AATT
1 AATT
58035007 CCCATTTTGC
Statistics
Matches: 425, Mismatches: 86, Indels: 16
0.81 0.16 0.03
Matches are distributed among these distances:
26 25 0.06
27 382 0.90
29 1 0.00
30 14 0.03
31 3 0.01
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:58034572 original size:54 final size:54
Alignment explanation
Indices: 58034461--58035006 Score: 603
Period size: 54 Copynumber: 10.1 Consensus size: 54
58034451 CGATTTGTAA
* ** ** ** *
58034461 AATTACTGAAATACCCTTGTCGGGTAGAATT-CTAAAATACCATTATAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * **
58034514 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCTTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
58034568 AATTACTAAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
58034622 AATTACTGGAATACCCCTGTAAGGTAGAATTACCGAAATACACCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
58034676 AATTACTGAAATACCCCTATAAGGTAAAATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
** ** * ** * * * * *
58034730 AATT-CCCATTTTGCCCCTAGGGTGTGATAGAAATACCAAAATACCCCTATAAGGTAG
1 AATTACTGA-AATACCCCT---GTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
58034787 AATTACTAAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
58034841 AATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* *
58034895 AATTACTGGAATACCCCTGTAAGGTAGAATTACCGAAATACACCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
58034949 AATTACTGAAATACCCCTATAAGGTAAAATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
58035003 AATT
1 AATT
58035007 CCCATTTTGC
Statistics
Matches: 417, Mismatches: 68, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
52 1 0.00
53 29 0.07
54 351 0.84
55 1 0.00
57 33 0.08
58 2 0.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACTGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:58034793 original size:165 final size:165
Alignment explanation
Indices: 58034592--58034898 Score: 497
Period size: 165 Copynumber: 1.9 Consensus size: 165
58034582 CCCTATAAGG
* * * * ** *
58034592 TAGAATTACCGAAATACCCCTGTAGGGTAGAATTACTGGAATACCCCTGTAAGGTAGAATTACCG
1 TAGAAATACCAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCG
* *
58034657 AAATACACCTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAAAATTACCGAGATACCCTTG
66 AAATACACCTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAAAATTACCGAAATACCCCTG
*
58034722 TGGGGTAAAATTCCCATTTTGCCCCTAGGGTGTGA
131 TAGGGTAAAATTCCCATTTTGCCCCTAGGGTGTGA
58034757 TAGAAATACCAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCG
1 TAGAAATACCAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCG
* *
58034822 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTG
66 AAATACACCTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAAAATTACCGAAATACCCCTG
*
58034887 TAGGGTAGAATT
131 TAGGGTAAAATT
58034899 ACTGGAATAC
Statistics
Matches: 129, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
165 129 1.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (165 bp):
TAGAAATACCAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCG
AAATACACCTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAAAATTACCGAAATACCCCTG
TAGGGTAAAATTCCCATTTTGCCCCTAGGGTGTGA
Found at i:58034801 original size:219 final size:219
Alignment explanation
Indices: 58034538--58034952 Score: 697
Period size: 219 Copynumber: 1.9 Consensus size: 219
58034528 CCTTGTAGGG
** * *
58034538 TAGAAATACCAAAATACCTTTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCG
1 TAGAAATACCAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCG
* *
58034603 AAATACCCCTGTAGGGTAGAATTACTGGAATACCCCTGTAAGGTAGAATTACCGAAATACACCTG
66 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACACCTG
* *
58034668 TAGGGTAGAATTACTGAAATACCCCTATAAGGTAAAATTACCGAGATAC-CCTTGTGGGGTAAAA
131 TAGGGTAGAATTACTGAAATACCCCTATAAGGTAAAATTACCGAAATACACC-TGTAGGGTAAAA
58034732 TTCCCATTTTGCCCCTAGGGTGTGA
195 TTCCCATTTTGCCCCTAGGGTGTGA
58034757 TAGAAATACCAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCG
1 TAGAAATACCAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCG
*
58034822 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTG
66 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACACCTG
* * * *
58034887 TAGGGTAGAATTACTGGAATACCCCTGTAAGGTAGAATTACCGAAATACACCTGTAGGGTAGAAT
131 TAGGGTAGAATTACTGAAATACCCCTATAAGGTAAAATTACCGAAATACACCTGTAGGGTAAAAT
58034952 T
196 T
58034953 ACTGAAATAC
Statistics
Matches: 182, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
219 180 0.99
220 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (219 bp):
TAGAAATACCAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCG
AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACACCTG
TAGGGTAGAATTACTGAAATACCCCTATAAGGTAAAATTACCGAAATACACCTGTAGGGTAAAAT
TCCCATTTTGCCCCTAGGGTGTGA
Found at i:58034815 original size:273 final size:273
Alignment explanation
Indices: 58034494--58035027 Score: 944
Period size: 273 Copynumber: 2.0 Consensus size: 273
58034484 GTAGAATTCT
* * * * * * **
58034494 AAAATACCATTATAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCTTT
1 AAAATACCACTATAAGGTAGAATTATCAAAATACCCCTATAAGGTAGAAATACCAAAATACCCCT
58034559 GTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
66 GTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
58034624 TTACTGGAATACCCCTGTAAGGTAGAATTACCGAAATACACCTGTAGGGTAGAATTACTGAAATA
131 TTACTGGAATACCCCTGTAAGGTAGAATTACCGAAATACACCTGTAGGGTAGAATTACTGAAATA
58034689 CCCCTATAAGGTAAAATTACCGAGATACCCTTGTGGGGTAAAATTCCCATTTTGCCCCTAGGGTG
196 CCCCTATAAGGTAAAATTACCGAGATACCCTTGTGGGGTAAAATTCCCATTTTGCCCCTAGGGTG
58034754 TGATAGAAATACC
261 TGATAGAAATACC
* * *
58034767 AAAATACCCCTATAAGGTAGAATTA-CTAAAATACCCCTATAAGGTAGAATTACCGAAATACCCC
1 AAAATACCACTATAAGGTAGAATTATC-AAAATACCCCTATAAGGTAGAAATACCAAAATACCCC
*
58034831 TGTAGGGTAGAATTACTGAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGA
65 TGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGA
58034896 ATTACTGGAATACCCCTGTAAGGTAGAATTACCGAAATACACCTGTAGGGTAGAATTACTGAAAT
130 ATTACTGGAATACCCCTGTAAGGTAGAATTACCGAAATACACCTGTAGGGTAGAATTACTGAAAT
58034961 ACCCCTATAAGGTAAAATTACCGAGATACCCTTGTGGGGTAAAATTCCCATTTTGCCCCTAGGGT
195 ACCCCTATAAGGTAAAATTACCGAGATACCCTTGTGGGGTAAAATTCCCATTTTGCCCCTAGGGT
58035026 GT
260 GT
58035028 TAAATGACTG
Statistics
Matches: 248, Mismatches: 12, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
272 1 0.00
273 247 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (273 bp):
AAAATACCACTATAAGGTAGAATTATCAAAATACCCCTATAAGGTAGAAATACCAAAATACCCCT
GTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
TTACTGGAATACCCCTGTAAGGTAGAATTACCGAAATACACCTGTAGGGTAGAATTACTGAAATA
CCCCTATAAGGTAAAATTACCGAGATACCCTTGTGGGGTAAAATTCCCATTTTGCCCCTAGGGTG
TGATAGAAATACC
Found at i:58035271 original size:27 final size:26
Alignment explanation
Indices: 58035233--58035312 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
58035223 TGAAAGAAGC
58035233 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
58035260 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
58035286 GTATCTGGTGACTTTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
58035313 ATTGACCGAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 9 0.19
27 39 0.81
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:58035538 original size:98 final size:98
Alignment explanation
Indices: 58035367--58035604 Score: 341
Period size: 98 Copynumber: 2.4 Consensus size: 98
58035357 GTGTGCCGTT
* * * * * *
58035367 ATTGTAGGTTTTGTGCCGATTATAGACCCGTTATCAATGGTTGAGTGCCGGTCATGTTATCAAAG
1 ATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTACCGATCATGTTACCAAAG
*
58035432 GCTATGTGCCGTTATTGTGGGCTTCGTATTGAG
66 GCTATGTGCCATTATTGTGGGCTTCGTATTGAG
* * *
58035465 ATTGTAGGCTTCGTACCGATTATAGACCCGTTATCAATGGCTGAGTATCGATCATGTTACCGAAG
1 ATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTACCGATCATGTTACCAAAG
* *
58035530 GCTGTGTGCCATTATTGTGGGCTTCGTATTGAT
66 GCTATGTGCCATTATTGTGGGCTTCGTATTGAG
* * *
58035563 ATTGTGGGCTTCGTGCCGATTATGGACCCGTTATCGATGGCT
1 ATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCT
58035605 TTGTGCAACG
Statistics
Matches: 124, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
98 124 1.00
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.35
Consensus pattern (98 bp):
ATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTACCGATCATGTTACCAAAG
GCTATGTGCCATTATTGTGGGCTTCGTATTGAG
Found at i:58037954 original size:27 final size:26
Alignment explanation
Indices: 58037921--58038238 Score: 221
Period size: 27 Copynumber: 11.8 Consensus size: 26
58037911 ATACCCCCAG
*
58037921 TTGTAAAATTACCAAAGTACCCCCGAT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* *
58037948 TTATAAAATTACCGAAATACCGTCGA-
1 TTGTAAAATTACC-AAATACCCTCGAT
* *
58037974 TTGTAAAATTACTGAAATACCCTCTAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
*
58038001 TTGTAAAATTACCGAAACACCCTC-AGT
1 TTGTAAAATTACC-AAATACCCTCGA-T
* *
58038028 TTGCAAAATTACTGAAATACCCTCGAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
* * *
58038055 TTGTAAAATTACTAAAATACCTTCGAC
1 TTGTAAAATTAC-CAAATACCCTCGAT
* *
58038082 TTGTAAAATTACCAAAGTACCCCCGGT
1 TTGTAAAATTACCAAA-TACCCTCGAT
* ** ** *
58038109 TTATAAAATTATTGAAATACTGTTGA-
1 TTGTAAAATTA-CCAAATACCCTCGAT
* **
58038135 TTGTAAAATTACTGAAATACCCTTAAT
1 TTGTAAAATTAC-CAAATACCCTCGAT
58038162 TTGTAAAATTACCGAAATACCCT-GAGT
1 TTGTAAAATTACC-AAATACCCTCGA-T
** ** *
58038189 TTGCGAAATTATTGAAATACCATCGAT
1 TTGTAAAATTA-CCAAATACCCTCGAT
* *
58038216 TTGTACAATTACTGAAATACCCT
1 TTGTAAAATTAC-CAAATACCCT
58038239 TATATGGTAG
Statistics
Matches: 229, Mismatches: 46, Indels: 32
0.75 0.15 0.10
Matches are distributed among these distances:
26 46 0.20
27 174 0.76
28 9 0.04
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACCAAATACCCTCGAT
Found at i:58038048 original size:54 final size:54
Alignment explanation
Indices: 58037898--58038263 Score: 330
Period size: 54 Copynumber: 6.8 Consensus size: 54
58037888 TTTAGTTTAC
* * * * *
58037898 TAAAATTAATGAAATACCCCCAG-TTGTAAAATTAC-CAAAGTACCCCCGATTTA
1 TAAAATTACTGAAATACCCTCAGATTGTAAAATTACTGAAA-TACCCTCGATTTG
* * *
58037951 TAAAATTACCGAAATACCGTC-GATTGTAAAATTACTGAAATACCCTCTATTTG
1 TAAAATTACTGAAATACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTG
* * * *
58038004 TAAAATTACCGAAACACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTG
* * * * * *
58038058 TAAAATTACTAAAATACCTTC-GACTTGTAAAATTAC-CAAAGTACCCCCGGTTTA
1 TAAAATTACTGAAATACCCTCAGA-TTGTAAAATTACTGAAA-TACCCTCGATTTG
* ** * **
58038112 TAAAATTATTGAAATACTGT-TGATTGTAAAATTACTGAAATACCCTTAATTTG
1 TAAAATTACTGAAATACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTG
* * * ** * *
58038165 TAAAATTACCGAAATACCCTGAGTTTGCGAAATTATTGAAATACCATCGATTTG
1 TAAAATTACTGAAATACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTG
* * * * * *
58038219 TACAATTACTGAAATACCCTTATATGGTAGAATTACTAAAATACC
1 TAAAATTACTGAAATACCCTCAGATTGTAAAATTACTGAAATACC
58038264 ACTATAGGGT
Statistics
Matches: 249, Mismatches: 56, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
52 1 0.00
53 98 0.39
54 150 0.60
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (54 bp):
TAAAATTACTGAAATACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTG
Found at i:58038143 original size:107 final size:107
Alignment explanation
Indices: 58037893--58038182 Score: 291
Period size: 107 Copynumber: 2.7 Consensus size: 107
58037883 AATATTTTAG
** * * * * *
58037893 TTTACTAAAATTAATGAAATACCCCCAG-TTGTAAAATTAC-CAAAGTACCCCCGATTTATAAAA
1 TTTA-TAAAATTACCGAAACACCCTCAGATTGTAAAATTACTGAAA-TACCCTCGATTTGTAAAA
* * *
58037956 TTACCGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCTA
64 TTACCGAAATACCGTCGATTGTAAAATTACTCAAATACCCCCGA
* * *
58038000 TTTGTAAAATTACCGAAACACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATTTGTAAAATT
1 TTTATAAAATTACCGAAACACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATT
** * *
58038065 ACTAAAATACCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGG
66 ACCGAAATACCGTCGA-TTGTAAAATTACTCAAA-TACCCCCGA
** * ** * **
58038108 TTTATAAAATTATTGAAATACTGT-TGATTGTAAAATTACTGAAATACCCTTAATTTGTAAAATT
1 TTTATAAAATTACCGAAACACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATT
58038172 ACCGAAATACC
66 ACCGAAATACC
58038183 CTGAGTTTGC
Statistics
Matches: 150, Mismatches: 29, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
106 19 0.13
107 92 0.61
108 39 0.26
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (107 bp):
TTTATAAAATTACCGAAACACCCTCAGATTGTAAAATTACTGAAATACCCTCGATTTGTAAAATT
ACCGAAATACCGTCGATTGTAAAATTACTCAAATACCCCCGA
Found at i:58038145 original size:26 final size:27
Alignment explanation
Indices: 58038112--58038263 Score: 128
Period size: 27 Copynumber: 5.7 Consensus size: 27
58038102 CCCCGGTTTA
* ** *
58038112 TAAAATTATTGAAATACTGTTGA-TTG
1 TAAAATTACTGAAATACCCTTAATTTG
58038138 TAAAATTACTGAAATACCCTTAATTTG
1 TAAAATTACTGAAATACCCTTAATTTG
* * *
58038165 TAAAATTACCGAAATACCCTGAGTTTG
1 TAAAATTACTGAAATACCCTTAATTTG
** * * **
58038192 CGAAATTATTGAAATACCATCGATTTG
1 TAAAATTACTGAAATACCCTTAATTTG
* *
58038219 TACAATTACTGAAATACCCTT-ATATGG
1 TAAAATTACTGAAATACCCTTAAT-TTG
* *
58038246 TAGAATTACTAAAATACC
1 TAAAATTACTGAAATACC
58038264 ACTATAGGGT
Statistics
Matches: 100, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
26 21 0.21
27 79 0.79
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTTAATTTG
Found at i:58038166 original size:161 final size:161
Alignment explanation
Indices: 58037921--58038236 Score: 508
Period size: 161 Copynumber: 2.0 Consensus size: 161
58037911 ATACCCCCAG
58037921 TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCGAAATACCGTCGATTGTAAAATTAC
1 TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCGAAATACCGTCGATTGTAAAATTAC
*
58037986 TGAAATACCCTCTATTTGTAAAATTACCGAAACACCCTCAGTTTGCAAAATTACTGAAATACCCT
66 TGAAATACCCTCTATTTGTAAAATTACCGAAACACCCTCAGTTTGCAAAATTACTGAAATACCAT
58038051 CGATTTGTAAAATTACTAAAATACCTTCGAC
131 CGATTTGTAAAATTACTAAAATACCTTCGAC
* ** * *
58038082 TTGTAAAATTACCAAAGTACCCCCGGTTTATAAAATTATTGAAATACTGTTGATTGTAAAATTAC
1 TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCGAAATACCGTCGATTGTAAAATTAC
* * * *
58038147 TGAAATACCCT-TAATTTGTAAAATTACCGAAATACCCTGAGTTTGCGAAATTATTGAAATACCA
66 TGAAATACCCTCT-ATTTGTAAAATTACCGAAACACCCTCAGTTTGCAAAATTACTGAAATACCA
* *
58038211 TCGATTTGTACAATTACTGAAATACC
130 TCGATTTGTAAAATTACTAAAATACC
58038237 CTTATATGGT
Statistics
Matches: 142, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
160 1 0.01
161 141 0.99
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (161 bp):
TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCGAAATACCGTCGATTGTAAAATTAC
TGAAATACCCTCTATTTGTAAAATTACCGAAACACCCTCAGTTTGCAAAATTACTGAAATACCAT
CGATTTGTAAAATTACTAAAATACCTTCGAC
Found at i:58038252 original size:27 final size:27
Alignment explanation
Indices: 58038222--58038715 Score: 404
Period size: 27 Copynumber: 18.3 Consensus size: 27
58038212 CGATTTGTAC
*
58038222 AATTACTGAAATACCCTTATATGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
* *
58038249 AATTACTAAAATACCAC-TATAGGGTAA
1 AATTACTGAAATACC-CTTATAGGGTAG
** * *
58038276 AATTACAAAAATACCCTTGTAGTGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
** ** *
58038303 AGCTACCAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
* * * * *
58038330 AAATACCGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
* * *
58038357 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
* *
58038384 AATTTACTGAAACACCCTTGTAGGGTAG
1 AA-TTACTGAAATACCCTTATAGGGTAG
* *
58038412 AATTACCGAAATACTCTTATAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
* * *
58038439 AAATACCGAAATA-CCTCTATAAGGTAG
1 AATTACTGAAATACCCT-TATAGGGTAG
*
58038466 AATTACTAAAATATCCCTGTA-A-GGTAG
1 AATTACTGAAATA-CCCT-TATAGGGTAG
* * *
58038493 AATTA-TCGAAATACCCCTGTAGGATAG
1 AATTACT-GAAATACCCTTATAGGGTAG
* * * *
58038520 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
** *
58038547 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
* * *
58038574 AATTATTGAAATACCCCTATATGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
* *
58038601 AATTACTGAAATACCCCTATAGGGTAA
1 AATTACTGAAATACCCTTATAGGGTAG
* * *
58038628 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
* * *
58038655 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTATAGGGTAG
* * * * * *
58038682 AATTACCGAGATAACCTTGTGGGGTAA
1 AATTACTGAAATACCCTTATAGGGTAG
58038709 AATTACT
1 AATTACT
58038716 ATTTTGCCCC
Statistics
Matches: 391, Mismatches: 66, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
25 1 0.00
26 8 0.02
27 351 0.90
28 26 0.07
29 5 0.01
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCTTATAGGGTAG
Found at i:58038279 original size:81 final size:81
Alignment explanation
Indices: 58037951--58038280 Score: 243
Period size: 81 Copynumber: 4.1 Consensus size: 81
58037941 CCCCGATTTA
** * * *
58037951 TAAAATTACCGAAATACCGTCGATTGTAAAATTACTGAAATACCCTCT-ATTTGTAAAATTACCG
1 TAAAATTATTGAAATACCATCGATTGTAAAATTACTGAAATACCCT-TAATTGGTAAAATTACCA
* * *
58038015 AAACACCCTCAGTTTGC-
65 AAATACCCTGAG-TAGCG
* * * *
58038032 -AAAATTACTGAAATACCCTCGATTTGTAAAATTACTAAAATA-CCTTCGACTT-GTAAAATTAC
1 TAAAATTATTGAAATACCATCGA-TTGTAAAATTACTGAAATACCCTT--AATTGGTAAAATTAC
* * ***
58038094 CAAAGTACCCCCG-GT-TTA
63 CAAAATA-CCCTGAGTAGCG
** * * *
58038112 TAAAATTATTGAAATACTGTTGATTGTAAAATTACTGAAATACCCTTAATTTGTAAAATTACCGA
1 TAAAATTATTGAAATACCATCGATTGTAAAATTACTGAAATACCCTTAATTGGTAAAATTACCAA
*
58038177 AATACCCTGAGTTTGCG
66 AATACCCTGAG-TAGCG
* * *
58038194 --AAATTATTGAAATACCATCGATTTGTACAATTACTGAAATACCCTT-ATATGGTAGAATTACT
1 TAAAATTATTGAAATACCATCGA-TTGTAAAATTACTGAAATACCCTTAAT-TGGTAAAATTACC
*
58038256 AAAATACCACT-A-TAGGG
64 AAAATACC-CTGAGTAGCG
58038273 TAAAATTA
1 TAAAATTA
58038281 CAAAAATACC
Statistics
Matches: 199, Mismatches: 33, Indels: 34
0.75 0.12 0.13
Matches are distributed among these distances:
79 11 0.06
80 78 0.39
81 103 0.52
82 7 0.04
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.32
Consensus pattern (81 bp):
TAAAATTATTGAAATACCATCGATTGTAAAATTACTGAAATACCCTTAATTGGTAAAATTACCAA
AATACCCTGAGTAGCG
Found at i:58038707 original size:81 final size:81
Alignment explanation
Indices: 58038230--58038714 Score: 497
Period size: 81 Copynumber: 6.0 Consensus size: 81
58038220 ACAATTACTG
* * * * * ** *
58038230 AAATACCCTTATATGGTAGAATTACTAAAATACCACTATAGGGTAAAATTACAAAAATACCCTTG
1 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
* * **
58038295 TAGTGTAGAGCTACCA
66 TAGGGTAAAATTACCA
* * * * **
58038311 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAAGGTAGAATTACTAAAATACCCCTG
1 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
* **
58038376 TAGGGTAGAATTTACTG
66 TAGGGTA-AAATTACCA
* * * * * * *
58038393 AAACACCCTTGTAGGGTAGAATTACCGAAATACTCTTATAGGGTAGAAATACCGAAATACCTCTA
1 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
* * *
58038458 TAAGGTAGAATTACTA
66 TAGGGTAAAATTACCA
* * *
58038474 AAATATCCC-TGTAAGGTAGAATTA-TCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCC
1 AAATA-CCCTTGTAGGGTAGAATTACT-GAAATACCCCTATAGGGTAGAATTACCGAAATACCCC
* *
58038537 TGTAAGGTAGAATTACCA
64 TGTAGGGTAAAATTACCA
* * * *
58038555 AAATACCCTTGTAGGGTAGAATTATTGAAATACCCCTATATGGTAGAATTACTGAAATACCCCTA
1 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
*
58038620 TAGGGTAAAATTACCG
66 TAGGGTAAAATTACCA
* * * * * *
58038636 AAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAGATAACCTTG
1 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
*
58038701 TGGGGTAAAATTAC
66 TAGGGTAAAATTAC
58038715 TATTTTGCCC
Statistics
Matches: 336, Mismatches: 63, Indels: 10
0.82 0.15 0.02
Matches are distributed among these distances:
80 3 0.01
81 265 0.79
82 68 0.20
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (81 bp):
AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAAAATTACCA
Found at i:58038716 original size:54 final size:54
Alignment explanation
Indices: 58038222--58038715 Score: 454
Period size: 54 Copynumber: 9.1 Consensus size: 54
58038212 CGATTTGTAC
* * * ** * *
58038222 AATTACTGAAATACCCTTATATGGTAGAATTACTAAAATACCACTATAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAA
** * * ** * *
58038276 AATTACAAAAATACCCTTGTAGTGTAGAGCTACCAAAATACCCTTGTAGGGTAGA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTA-A
* * **
58038331 AA-TACCGAAATACCCCTGTAAGGTAGAATTACTAAAATACCCCTGTAGGGTAGA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTA-A
* * * * * *
58038385 ATTTACTGAAACACCCTTGTAGGGTAGAATTACCGAAATACTCTTATAGGGTAGA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTA-A
* * * * ** * * *
58038440 AA-TACCGAAATACCTCTATAAGGTAGAATTACTAAAATATCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAA
* * *
58038493 AATTA-TCGAAATACCCCTGTAGGATAGAATTACCGAAATACCCCTGTAAGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAA
** * ** * * *
58038547 AATTACCAAAATACCCTTGTAGGGTAGAATTATTGAAATACCCCTATATGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAA
* * *
58038601 AATTACTGAAATACCCCTATAGGGTAAAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAA
* * * * *
58038655 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAGATAACCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAA
58038709 AATTACT
1 AATTACT
58038716 ATTTTGCCCC
Statistics
Matches: 357, Mismatches: 78, Indels: 10
0.80 0.18 0.02
Matches are distributed among these distances:
53 2 0.01
54 308 0.86
55 47 0.13
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAA
Found at i:58039019 original size:27 final size:26
Alignment explanation
Indices: 58038939--58039021 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
58038929 TTAAGGAAGC
58038939 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
* * *
58038966 ATTCTAGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* *
58038992 GTATCTGGTGACTTTGCCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
58039019 GTT
1 GTT
58039022 GACCGGTCAA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 9 0.19
27 39 0.81
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:58039175 original size:20 final size:20
Alignment explanation
Indices: 58039150--58039190 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
58039140 TGTGTACCGT
*
58039150 TATTGTGGGCTTCGTATCGA
1 TATTGTAGGCTTCGTATCGA
*
58039170 TATTGTAGGCTTCGTGTCGA
1 TATTGTAGGCTTCGTATCGA
58039190 T
1 T
58039191 TATAGACCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.29, T:0.41
Consensus pattern (20 bp):
TATTGTAGGCTTCGTATCGA
Found at i:58039242 original size:98 final size:98
Alignment explanation
Indices: 58039072--58039310 Score: 370
Period size: 98 Copynumber: 2.4 Consensus size: 98
58039062 TGTGTGCTGT
* * *
58039072 TATTGTAGGCTTTGTGCCGATTATAGACCCGTTATCAATGGCTGAGTACCGGTCATGTTATCGAA
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTACCGATCATGTTACCGAA
*
58039137 GGTTGTGTACCGTTATTGTGGGCTTCGTATCGA
66 GGCTGTGTACCGTTATTGTGGGCTTCGTATCGA
* * * *
58039170 TATTGTAGGCTTCGTGTCGATTATAGACCCGTTCTCAATGGCTGAGTGCTGATCATGTTACCGAA
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTACCGATCATGTTACCGAA
** *
58039235 GGCTGTGTGTCGTTATTGTGGGCTTTGTATCGA
66 GGCTGTGTACCGTTATTGTGGGCTTCGTATCGA
*
58039268 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCGATGGCT
1 TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCT
58039311 TTGTGCCACG
Statistics
Matches: 127, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 127 1.00
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.36
Consensus pattern (98 bp):
TATTGTAGGCTTCGTGCCGATTATAGACCCGTTATCAATGGCTGAGTACCGATCATGTTACCGAA
GGCTGTGTACCGTTATTGTGGGCTTCGTATCGA
Found at i:58039279 original size:20 final size:20
Alignment explanation
Indices: 58039234--58039279 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
58039224 ATGTTACCGA
* * *
58039234 AGGCTGTGTGTCGTTATTGT
1 AGGCTTTGTATCGATATTGT
*
58039254 GGGCTTTGTATCGATATTGT
1 AGGCTTTGTATCGATATTGT
58039274 AGGCTT
1 AGGCTT
58039280 CGTGCCGATT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.13, C:0.11, G:0.33, T:0.43
Consensus pattern (20 bp):
AGGCTTTGTATCGATATTGT
Found at i:58039385 original size:27 final size:27
Alignment explanation
Indices: 58039335--58039412 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
58039325 CTGTTAAGTT
*
58039335 GCTTTGCCACATTATCTGATTCTGGTG
1 GCTTTGCCACAATATCTGATTCTGGTG
*
58039362 GCTTTGCCACAATATTTG-TATCTGGTG
1 GCTTTGCCACAATATCTGAT-TCTGGTG
* * * *
58039389 ACTCTGTCACAATATCAG-TTCTGG
1 GCTTTGCCACAATATCTGATTCTGG
58039413 CAGCCATACT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 6 0.14
27 37 0.86
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (27 bp):
GCTTTGCCACAATATCTGATTCTGGTG
Found at i:58041613 original size:56 final size:55
Alignment explanation
Indices: 58041547--58041684 Score: 156
Period size: 56 Copynumber: 2.5 Consensus size: 55
58041537 ACCCTTACAT
* *
58041547 ACATGCATATGGCCCACTT-GGCCC-ATCTC-ATTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCA-TTAGGCCCAAT-TCAATTCATATGG--CATCAGGCCCAAATC
*
58041603 ACATTCATATGGCCCATTAGGCCCAATTCATATTCATATGGCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAATTCA-ATTCATATGGCATCAGGCCCAAATC
* * *
58041659 ACCTTTATATGGCCCGTTAGGCCCAA
1 ACATTCATATGGCCCATTAGGCCCAA
58041685 ATCACCTTAT
Statistics
Matches: 72, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
55 2 0.03
56 58 0.81
57 2 0.03
58 10 0.14
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (55 bp):
ACATTCATATGGCCCATTAGGCCCAATTCAATTCATATGGCATCAGGCCCAAATC
Found at i:58041616 original size:29 final size:29
Alignment explanation
Indices: 58041547--58041697 Score: 161
Period size: 29 Copynumber: 5.4 Consensus size: 29
58041537 ACCCTTACAT
*
58041547 ACATGCATATGGCCCACTT-GGCCC--ATC
1 ACATTCATATGGCCCA-TTAGGCCCAAATC
* * *
58041574 TCATTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
58041603 ACATTCATATGGCCCATTAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
58041632 ATATTCATATGG--CATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
58041659 ACCTTTATATGGCCCGTTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
58041688 ACCTT-ATATG
1 ACATTCATATG
58041698 CATGCTCACA
Statistics
Matches: 107, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.01
27 42 0.39
28 5 0.05
29 59 0.55
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.28
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:58041935 original size:8 final size:8
Alignment explanation
Indices: 58041908--58041942 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
58041898 GTAGCCAAAC
58041908 TTTCGGCT
1 TTTCGGCT
* *
58041916 TTTCGACA
1 TTTCGGCT
58041924 TTTCGGCT
1 TTTCGGCT
58041932 TTTCGGCT
1 TTTCGGCT
58041940 TTT
1 TTT
58041943 GCCGATCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.06, C:0.23, G:0.20, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:58047926 original size:29 final size:29
Alignment explanation
Indices: 58047848--58047964 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
58047838 TGGCCCATCT
*
58047848 CATTCATATGGCCCATCAGGCACAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
58047877 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* * * *
58047906 TATTCATATGGCCTATTAGGCCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* * * *
58047935 C-CTCTATATGGCCCGTTAGGCCCAAATCA
1 CATTC-ATATGGCCCATCAGGCCCAATTCA
58047964 C
1 C
58047965 CTTATATTCA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
28 2 0.03
29 76 0.97
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
CATTCATATGGCCCATCAGGCCCAATTCA
Found at i:58053580 original size:13 final size:13
Alignment explanation
Indices: 58053562--58053586 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58053552 CACTATCAAC
58053562 TCAGAATTCAAAA
1 TCAGAATTCAAAA
58053575 TCAGAATTCAAA
1 TCAGAATTCAAA
58053587 TCACATTGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.08, T:0.24
Consensus pattern (13 bp):
TCAGAATTCAAAA
Found at i:58054795 original size:130 final size:130
Alignment explanation
Indices: 58054562--58054818 Score: 505
Period size: 130 Copynumber: 2.0 Consensus size: 130
58054552 GAAAATTCTG
58054562 TTCATCAAATCCATAAAAACATCAGGTGCATTCGTTAATCCAAAAAGCATAACTAGAAATTTGAA
1 TTCATCAAATCCATAAAAACATCAGGTGCATTCGTTAATCCAAAAAGCATAACTAGAAATTTGAA
58054627 AAGGTCGTACCTCGTTTGGAAAGTAGTTTTCAGAATATCTGAATCTTTTACTTGCAACTGATCTA
66 AAGGTCGTACCTCGTTTGGAAAGTAGTTTTCAGAATATCTGAATCTTTTACTTGCAACTGATCTA
58054692 TTCATCAAATCCATAAAAACATCAGGTGCATTCGTTAATCCAAAAAGCATAACTAGAAATTTGAA
1 TTCATCAAATCCATAAAAACATCAGGTGCATTCGTTAATCCAAAAAGCATAACTAGAAATTTGAA
*
58054757 AAGGTCGTACCTCGTTTGGAAAGTAGTTTTCAGAATATCTGAATCTTTTACTTGTAACTGAT
66 AAGGTCGTACCTCGTTTGGAAAGTAGTTTTCAGAATATCTGAATCTTTTACTTGCAACTGAT
58054819 AATATCCAGA
Statistics
Matches: 126, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
130 126 1.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (130 bp):
TTCATCAAATCCATAAAAACATCAGGTGCATTCGTTAATCCAAAAAGCATAACTAGAAATTTGAA
AAGGTCGTACCTCGTTTGGAAAGTAGTTTTCAGAATATCTGAATCTTTTACTTGCAACTGATCTA
Found at i:58059914 original size:25 final size:25
Alignment explanation
Indices: 58059886--58059959 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
58059876 AATATCGCAC
58059886 ACTTAGTGCTATTTCATTAAACCAA
1 ACTTAGTGCTATTTCATTAAACCAA
* * *
58059911 ACTTA----TA--TCAGT-ATCGCAC
1 ACTTAGTGCTATTTCATTAAAC-CAA
58059930 ACTTAGTGCTATTTCATTAAACCAA
1 ACTTAGTGCTATTTCATTAAACCAA
58059955 ACTTA
1 ACTTA
58059960 TATCAGTATC
Statistics
Matches: 35, Mismatches: 6, Indels: 16
0.61 0.11 0.28
Matches are distributed among these distances:
18 2 0.06
19 11 0.31
21 2 0.06
23 2 0.06
25 16 0.46
26 2 0.06
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (25 bp):
ACTTAGTGCTATTTCATTAAACCAA
Found at i:58059936 original size:44 final size:44
Alignment explanation
Indices: 58059878--58059987 Score: 202
Period size: 44 Copynumber: 2.5 Consensus size: 44
58059868 GCTATAGTAA
58059878 TATCGCACACTTAGTGCTATTTCATTAAACCAAACTTATATCAG
1 TATCGCACACTTAGTGCTATTTCATTAAACCAAACTTATATCAG
58059922 TATCGCACACTTAGTGCTATTTCATTAAACCAAACTTATATCAG
1 TATCGCACACTTAGTGCTATTTCATTAAACCAAACTTATATCAG
* *
58059966 TATCGCACACATAGTGCCATTT
1 TATCGCACACTTAGTGCTATTT
58059988 ATTCAGCCAT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.34
Consensus pattern (44 bp):
TATCGCACACTTAGTGCTATTTCATTAAACCAAACTTATATCAG
Found at i:58070564 original size:79 final size:79
Alignment explanation
Indices: 58070430--58070581 Score: 268
Period size: 79 Copynumber: 1.9 Consensus size: 79
58070420 CAAACAATGG
*
58070430 TAGAACTCAACTCCTGGAGTTTTGAAGTTTCGGCTATAAGCTCCCAAATCAATGGTTTTTCGACT
1 TAGAACTCAACTCCTGGAGTTTTGAAGTTTCGGCTATAAGCCCCCAAATCAATGGTTTTTCGACT
58070495 TTTGGGTGAGATGA
66 TTTGGGTGAGATGA
* * *
58070509 TAGAACTCGACTCCTGGAGTTTTGAAGTTTCGGCTATAAGCCCCCAAATCTATGGTTTTTCGGCT
1 TAGAACTCAACTCCTGGAGTTTTGAAGTTTCGGCTATAAGCCCCCAAATCAATGGTTTTTCGACT
58070574 TTTGGGTG
66 TTTGGGTG
58070582 GTGAAGGAGA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 69 1.00
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (79 bp):
TAGAACTCAACTCCTGGAGTTTTGAAGTTTCGGCTATAAGCCCCCAAATCAATGGTTTTTCGACT
TTTGGGTGAGATGA
Found at i:58084256 original size:13 final size:13
Alignment explanation
Indices: 58084238--58084268 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
58084228 CACTTGATTG
58084238 GAACTTGCCATTT
1 GAACTTGCCATTT
58084251 GAACTTGCCATTT
1 GAACTTGCCATTT
58084264 GAACT
1 GAACT
58084269 AATGTGCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (13 bp):
GAACTTGCCATTT
Found at i:58086419 original size:42 final size:42
Alignment explanation
Indices: 58086341--58086428 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
58086331 AGCACCCATG
* * *
58086341 GACAACACTATCAGAATGACATAGGCGTGTGAAAACCTACAC
1 GACAACACTATCAGAATGACACAGGCCTATGAAAACCTACAC
* * * *
58086383 GACAACACTGTCAGAATGACACGGGCCTATGCAAACCTGCAC
1 GACAACACTATCAGAATGACACAGGCCTATGAAAACCTACAC
58086425 GACA
1 GACA
58086429 GTGGGAGAAG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.38, C:0.27, G:0.20, T:0.15
Consensus pattern (42 bp):
GACAACACTATCAGAATGACACAGGCCTATGAAAACCTACAC
Found at i:58089176 original size:28 final size:28
Alignment explanation
Indices: 58089081--58089187 Score: 92
Period size: 28 Copynumber: 3.8 Consensus size: 28
58089071 TGAATATTCA
* *
58089081 ATGTATCGCACACT-AGATGCCATACACG
1 ATGTATCGCACACTGAG-TGCCATTCTCG
*** * * * *
58089109 ATACCTTGCACACTAAGTGTCATTCTGG
1 ATGTATCGCACACTGAGTGCCATTCTCG
*
58089137 ATG-ATTCTCACACTGAGTGCCATTCTCG
1 ATGTA-TCGCACACTGAGTGCCATTCTCG
58089165 ATGTATCGCACACTGAGTGCCAT
1 ATGTATCGCACACTGAGTGCCAT
58089188 CCCCGATACT
Statistics
Matches: 60, Mismatches: 16, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
28 57 0.95
29 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (28 bp):
ATGTATCGCACACTGAGTGCCATTCTCG
Found at i:58089201 original size:28 final size:28
Alignment explanation
Indices: 58089145--58089202 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
58089135 GGATGATTCT
* * *
58089145 CACACTGAGTGCCATTCTCGATGTATCG
1 CACACTGAGTGCCATCCCCGATCTATCG
58089173 CACACTGAGTGCCATCCCCGATACT-TCG
1 CACACTGAGTGCCATCCCCGAT-CTATCG
58089201 CA
1 CA
58089203 TGTTAAATGC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 25 0.96
29 1 0.04
ACGTcount: A:0.22, C:0.34, G:0.19, T:0.24
Consensus pattern (28 bp):
CACACTGAGTGCCATCCCCGATCTATCG
Found at i:58094726 original size:20 final size:19
Alignment explanation
Indices: 58094703--58094762 Score: 83
Period size: 20 Copynumber: 3.3 Consensus size: 19
58094693 TAAACATGGT
58094703 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
58094722 CATGTATGATATGCACATG-
1 -ATGTATGATATGCACATGA
58094741 A--TATGATATGCACATG-
1 ATGTATGATATGCACATGA
58094757 ATGTAT
1 ATGTAT
58094763 TCATAAATGC
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
16 16 0.42
18 4 0.11
20 18 0.47
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (19 bp):
ATGTATGATATGCACATGA
Found at i:58094747 original size:16 final size:16
Alignment explanation
Indices: 58094707--58094758 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
58094697 CATGGTATGT
*
58094707 ATGATATGCACATG-AC
1 ATGATATG-ATATGCAC
58094723 ATG-TATGATATGCAC
1 ATGATATGATATGCAC
58094738 ATGATATGATATGCAC
1 ATGATATGATATGCAC
58094754 ATGAT
1 ATGAT
58094759 GTATTCATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
14 4 0.12
15 9 0.27
16 20 0.61
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (16 bp):
ATGATATGATATGCAC
Found at i:58094927 original size:25 final size:24
Alignment explanation
Indices: 58094808--58094913 Score: 185
Period size: 24 Copynumber: 4.4 Consensus size: 24
58094798 GAGGAAGTGC
58094808 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
58094832 AAAAGTGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
58094856 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
58094880 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
58094904 AAAAGAGGCT
1 AAAAG-GGCT
58094914 AGGCCTCTAG
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
24 74 0.95
25 4 0.05
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:58099062 original size:48 final size:48
Alignment explanation
Indices: 58098999--58100047 Score: 1790
Period size: 48 Copynumber: 21.9 Consensus size: 48
58098989 TATATATGTG
* *
58098999 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
58099047 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
58099095 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
58099143 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
58099191 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
58099239 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
58099287 TGTGGTAAA-TCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGT-CGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
58099335 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
58099383 TGTGGTAAA-TCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGT-CGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
58099431 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
58099479 TGTGGTAAA-TCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGT-CGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
58099527 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
58099575 TGTGGTAAA-TCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGT-CGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
58099623 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
58099671 TGTGGTAAA-TCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGT-CGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
58099719 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
58099767 TGTGGTAAA-TCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGT-CGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
58099815 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
58099863 TGTGGTAAA-TCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGT-CGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
58099911 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAGATATGTATA
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
58099959 TGTGGTAAA-TCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGT-CGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* *
58100007 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGAT
58100048 GTGTGTATAT
Statistics
Matches: 949, Mismatches: 36, Indels: 32
0.93 0.04 0.03
Matches are distributed among these distances:
48 949 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:58100047 original size:96 final size:96
Alignment explanation
Indices: 58098999--58100039 Score: 1996
Period size: 96 Copynumber: 10.8 Consensus size: 96
58098989 TATATATGTG
* * *
58098999 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGTCGAATG
1 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
58099064 GCTAGTGTGAAATATGTATGAGATATGTATA
66 GCTAGTGTGAAATATGAATGAGATATGTATA
*
58099095 TGTGGTAAAGT-CGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGTCGAAT
1 TGTGGTAAA-TCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
*
58099159 GGCTAGTGTGAAATATGTATGAGATATGTATA
65 GGCTAGTGTGAAATATGAATGAGATATGTATA
58099191 TGTGGTAAAGT-CGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
1 TGTGGTAAA-TCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAAT
58099255 GGCTAGTGTGAAATATGAATGAGATATGTATA
65 GGCTAGTGTGAAATATGAATGAGATATGTATA
58099287 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
58099352 GCTAGTGTGAAATATGAATGAGATATGTATA
66 GCTAGTGTGAAATATGAATGAGATATGTATA
58099383 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
58099448 GCTAGTGTGAAATATGAATGAGATATGTATA
66 GCTAGTGTGAAATATGAATGAGATATGTATA
58099479 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
58099544 GCTAGTGTGAAATATGAATGAGATATGTATA
66 GCTAGTGTGAAATATGAATGAGATATGTATA
58099575 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
58099640 GCTAGTGTGAAATATGAATGAGATATGTATA
66 GCTAGTGTGAAATATGAATGAGATATGTATA
58099671 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
58099736 GCTAGTGTGAAATATGAATGAGATATGTATA
66 GCTAGTGTGAAATATGAATGAGATATGTATA
58099767 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
58099832 GCTAGTGTGAAATATGAATGAGATATGTATA
66 GCTAGTGTGAAATATGAATGAGATATGTATA
58099863 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
58099928 GCTAGTGTGAAATATGAATGAGATATGTATA
66 GCTAGTGTGAAATATGAATGAGATATGTATA
58099959 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
58100024 GCTAGTGTGAAATATG
66 GCTAGTGTGAAATATG
58100040 TAGGAGATGT
Statistics
Matches: 939, Mismatches: 4, Indels: 4
0.99 0.00 0.00
Matches are distributed among these distances:
95 1 0.00
96 938 1.00
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.32
Consensus pattern (96 bp):
TGTGGTAAATCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
GCTAGTGTGAAATATGAATGAGATATGTATA
Found at i:58100242 original size:37 final size:37
Alignment explanation
Indices: 58100188--58100290 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
58100178 GGAAATATAT
*
58100188 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
58100225 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
58100262 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
58100291 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:58106825 original size:39 final size:41
Alignment explanation
Indices: 58106604--58106826 Score: 219
Period size: 40 Copynumber: 5.6 Consensus size: 41
58106594 TTGAATGCTG
* * * * * *
58106604 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-ATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTTAAA
* * * *
58106644 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATAC-TAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTTAAA
58106684 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTTAAA
**
58106724 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-TTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTTAAA
* * *
58106764 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTTAAA
* *
58106804 T-CGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
58106827 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
39 29 0.18
40 122 0.77
41 8 0.05
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (41 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTTAAA
Found at i:58110541 original size:16 final size:16
Alignment explanation
Indices: 58110520--58110552 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
58110510 ACATGGTATG
58110520 TATGATATGCACATGA
1 TATGATATGCACATGA
58110536 TATGATATGCACATGA
1 TATGATATGCACATGA
58110552 T
1 T
58110553 GTATTCATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.33
Consensus pattern (16 bp):
TATGATATGCACATGA
Found at i:58110628 original size:24 final size:24
Alignment explanation
Indices: 58110601--58110725 Score: 207
Period size: 24 Copynumber: 5.2 Consensus size: 24
58110591 GAGGAAGTGC
58110601 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
58110625 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
58110649 AAAAGGGCTTATGCCCCGGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
58110673 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
58110697 AAAAGGGCCTT-TTCCCCAGTTATT
1 AAAAGGG-CTTATGCCCCAGTTATT
58110721 AAAAG
1 AAAAG
58110726 AAGCTAGGCC
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
24 92 0.97
25 3 0.03
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:58115474 original size:40 final size:40
Alignment explanation
Indices: 58114417--58115470 Score: 1878
Period size: 40 Copynumber: 26.4 Consensus size: 40
58114407 AAACCAAGTA
* * * *
58114417 CCTTCGAGATTTAGC-CGGATATAGCTA-CTCGCTCAACTG
1 CCTTCGGGACTTAGCTCGGATATAG-TACCTCGCACAAATG
* * *
58114456 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
* *
58114496 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
* *
58114536 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58114576 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58114616 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58114656 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58114696 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58114736 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58114776 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58114816 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58114856 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58114896 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58114936 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58114976 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58115016 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58115056 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58115096 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58115136 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58115176 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
* *
58115216 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58115256 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
* *
58115296 CCTTCGGGACTTAGCCCGGATACAGTACCTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
* *
58115336 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
* * * *
58115376 CCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
* *
58115416 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
58115456 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
58115471 CCGGTTATCA
Statistics
Matches: 993, Mismatches: 20, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
39 15 0.02
40 978 0.98
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCTCGGATATAGTACCTCGCACAAATG
Found at i:58122069 original size:40 final size:40
Alignment explanation
Indices: 58122036--58122536 Score: 912
Period size: 40 Copynumber: 12.5 Consensus size: 40
58122026 CTCGCTCAAC
* *
58122036 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
* *
58122076 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
58122116 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
1 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
58122156 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
1 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
58122196 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
1 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
58122236 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
1 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
58122276 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
1 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
58122316 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
1 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
* *
58122356 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
58122396 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
1 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
* *
58122436 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
* *
58122476 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
58122516 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGACTTAGCCCGG
58122537 TTATCATCCG
Statistics
Matches: 453, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 453 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATACAGTAACTCGTACAAA
Found at i:58127185 original size:28 final size:28
Alignment explanation
Indices: 58127122--58127272 Score: 232
Period size: 28 Copynumber: 5.4 Consensus size: 28
58127112 ATATTAAGTC
*
58127122 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
58127149 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
58127177 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
58127205 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
58127233 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
58127262 CGCACACTTAG
1 CGCACACTTAG
58127273 CGCCAATCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 77 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:58129655 original size:27 final size:26
Alignment explanation
Indices: 58129599--58129655 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
58129589 CAACCTTAAC
* * *
58129599 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
58129625 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
58129652 CCTA
1 CCTA
58129656 TAAAGTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:58131951 original size:19 final size:18
Alignment explanation
Indices: 58131914--58131957 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
58131904 ATACATACAG
58131914 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
58131931 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
58131950 TACTAATT
1 TAATAATT
58131958 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:58134182 original size:38 final size:38
Alignment explanation
Indices: 58134131--58134219 Score: 169
Period size: 38 Copynumber: 2.3 Consensus size: 38
58134121 ACCCGTACCT
58134131 GCCCTACACTCCATGTGGGGAATAGCTCAACCCACCCA
1 GCCCTACACTCCATGTGGGGAATAGCTCAACCCACCCA
58134169 GCCCTACACTCCATGTGGGGAATAGCTCAACCCACCCA
1 GCCCTACACTCCATGTGGGGAATAGCTCAACCCACCCA
*
58134207 GCCCTACGCTCCA
1 GCCCTACACTCCA
58134220 CAGTTGCAGC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.25, C:0.42, G:0.18, T:0.16
Consensus pattern (38 bp):
GCCCTACACTCCATGTGGGGAATAGCTCAACCCACCCA
Found at i:58134448 original size:27 final size:26
Alignment explanation
Indices: 58134392--58134448 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
58134382 CAACCTTAAC
* * * *
58134392 CCTAGGGGTATATTAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
58134418 CCTAGGGGTAAATCAGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
58134445 CCTA
1 CCTA
58134449 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:58134519 original size:35 final size:35
Alignment explanation
Indices: 58134473--58134542 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
58134463 TAATTTTATC
58134473 AGTTTTAAGGTTTCTCACGAATGTTACTTTCCCTA
1 AGTTTTAAGGTTTCTCACGAATGTTACTTTCCCTA
*
58134508 AGTTTTAAGGTTTCTTACGAATGTTACTTTCCCTA
1 AGTTTTAAGGTTTCTCACGAATGTTACTTTCCCTA
58134543 CTAGCCCATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (35 bp):
AGTTTTAAGGTTTCTCACGAATGTTACTTTCCCTA
Found at i:58135228 original size:21 final size:21
Alignment explanation
Indices: 58135202--58135247 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
58135192 CAAGCCCTTT
58135202 GCTATACGTCCCCTTGTCCGC
1 GCTATACGTCCCCTTGTCCGC
58135223 GCTATACGTCCCCTTGTCCGC
1 GCTATACGTCCCCTTGTCCGC
58135244 GCTA
1 GCTA
58135248 ACTCTTACAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.11, C:0.41, G:0.20, T:0.28
Consensus pattern (21 bp):
GCTATACGTCCCCTTGTCCGC
Found at i:58137510 original size:28 final size:28
Alignment explanation
Indices: 58137479--58137576 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
58137469 CCGATACCTT
* *
58137479 GCACACTAAGTGTCGTTCTGGATGTTTC
1 GCACACTAAGTGCCATTCTGGATGTTTC
* *
58137507 GCACACTAAGTGCCATCCT-CAT-TACTTC
1 GCACACTAAGTGCCATTCTGGATGT--TTC
*
58137535 GCACACTAAGTGCCATTCTGGATGTATC
1 GCACACTAAGTGCCATTCTGGATGTTTC
58137563 GCACACTAAGTGCC
1 GCACACTAAGTGCC
58137577 TTCCCCGATA
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
26 1 0.02
27 2 0.03
28 53 0.90
29 2 0.03
30 1 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTGGATGTTTC
Found at i:58137514 original size:56 final size:55
Alignment explanation
Indices: 58137444--58137605 Score: 195
Period size: 56 Copynumber: 2.9 Consensus size: 55
58137434 TGAATATTCA
* * *
58137444 ATGTATCACACACT-AGATGCCATACCCGATACCTT-GCACACTAAGTGTCGTTCTGG
1 ATGTATCGCACACTAAG-TGCCAT-CCCGATA-CTTCGCACACTAAGTGCCATTCTGG
*
58137500 ATGTTTCGCACACTAAGTGCCATCCTC-ATTACTTCGCACACTAAGTGCCATTCTGG
1 ATGTATCGCACACTAAGTGCCATCC-CGA-TACTTCGCACACTAAGTGCCATTCTGG
* *
58137556 ATGTATCGCACACTAAGTGCCTTCCCCGATACTTCGCACGCTAAGTGCCA
1 ATGTATCGCACACTAAGTGCCAT-CCCGATACTTCGCACACTAAGTGCCA
58137606 CATATAATTA
Statistics
Matches: 93, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
55 6 0.06
56 82 0.88
57 5 0.05
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (55 bp):
ATGTATCGCACACTAAGTGCCATCCCGATACTTCGCACACTAAGTGCCATTCTGG
Found at i:58137592 original size:28 final size:28
Alignment explanation
Indices: 58137470--58137604 Score: 109
Period size: 28 Copynumber: 4.8 Consensus size: 28
58137460 ATGCCATACC
*
58137470 CGATACCTT-GCACACTAAGTGTCGTT-CT
1 CGATA-CTTCGCACACTAAGTG-CCTTCCT
* ** *
58137498 GGATGTTTCGCACACTAAGTGCCATCCT
1 CGATACTTCGCACACTAAGTGCCTTCCT
58137526 C-ATTACTTCGCACACTAAGTGCCATT-CT
1 CGA-TACTTCGCACACTAAGTGCC-TTCCT
* * *
58137554 GGAT-GTATCGCACACTAAGTGCCTTCCC
1 CGATACT-TCGCACACTAAGTGCCTTCCT
*
58137582 CGATACTTCGCACGCTAAGTGCC
1 CGATACTTCGCACACTAAGTGCC
58137605 ACATATAATT
Statistics
Matches: 84, Mismatches: 15, Indels: 16
0.73 0.13 0.14
Matches are distributed among these distances:
27 8 0.10
28 73 0.87
29 3 0.04
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (28 bp):
CGATACTTCGCACACTAAGTGCCTTCCT
Found at i:58145397 original size:20 final size:20
Alignment explanation
Indices: 58145349--58145397 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
58145339 CGTGGCACAC
58145349 GCCCGTGTTCGATTACTTCA
1 GCCCGTGTTCGATTACTTCA
* *
58145369 GCCCATGTTCGATTTCTTCA
1 GCCCGTGTTCGATTACTTCA
*
58145389 GGCCGTGTT
1 GCCCGTGTT
58145398 TGAGCCTGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.12, C:0.29, G:0.22, T:0.37
Consensus pattern (20 bp):
GCCCGTGTTCGATTACTTCA
Found at i:58145486 original size:21 final size:20
Alignment explanation
Indices: 58145462--58145500 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
58145452 CCGTGTTAAT
58145462 TTCGTACTTTGGCCCATTTTC
1 TTCGT-CTTTGGCCCATTTTC
* *
58145483 TTCGTTTTTGGCCTATTT
1 TTCGTCTTTGGCCCATTT
58145501 CTCGTTCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.08, C:0.23, G:0.15, T:0.54
Consensus pattern (20 bp):
TTCGTCTTTGGCCCATTTTC
Found at i:58165168 original size:53 final size:54
Alignment explanation
Indices: 58165090--58165506 Score: 333
Period size: 55 Copynumber: 7.9 Consensus size: 54
58165080 TCGGGAACCT
* * * * *
58165090 TTTCCTTTTTGAACTTACCATTGCCATGTCTAGACATGGTCTTACATGGTATCC
1 TTTCCTTATAGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC
* * * *
58165144 TTTCCATAT-GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CC
1 TTTCCTTATAGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC
*
58165196 TTTGCCTTATAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGGTATCC
1 TTT-CCTTATAG-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC
* * * * *
58165252 TTGCCTTAT-GAACTCACCAATGCCATGTCTTGGCATCGTTTTACATGGGA-CC
1 TTTCCTTATAGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC
* *** ** *
58165304 TTTGCCTTATAGTAACTCATCAATATAATGTCTTGACATGGTCTTACATTATTTCC
1 TTT-CCTTATAG-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC
* * * * * * *
58165360 TTGCCTTATAGAACTTATCAATGCCATGTCTTGGCATGGTCTCATATGATATCC
1 TTTCCTTATAGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC
* *
58165414 TTAT-C-T-T---AC-CA--AATGCCATGT-TCCGAATATGGTCTTACATGGTATCC
1 TT-TCCTTATAGAACTCACCAATGCCATGTCT-TG-ACATGGTCTTACATGGTATCC
* * * * *
58165461 TTGT-CTTATAGAACTTATCAATGCCATGCCTTGGCAAGGTCTTACA
1 TT-TCCTTATAGAACTCACCAATGCCATGTCTTGACATGGTCTTACA
58165507 ACATGATATC
Statistics
Matches: 287, Mismatches: 56, Indels: 40
0.75 0.15 0.10
Matches are distributed among these distances:
45 1 0.00
46 11 0.04
47 20 0.07
48 2 0.01
49 3 0.01
52 12 0.04
53 83 0.29
54 57 0.20
55 89 0.31
56 9 0.03
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
TTTCCTTATAGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC
Found at i:58165300 original size:108 final size:108
Alignment explanation
Indices: 58165111--58165401 Score: 438
Period size: 108 Copynumber: 2.7 Consensus size: 108
58165101 AACTTACCAT
* * * *
58165111 TGCCATGTCTAGACATGGTCTTACATGGTATCCTTTCCATATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGTCTTG
*
58165176 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
66 GCATCGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
58165219 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGTCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGTCTTG
*
58165284 GCATCGTTTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
66 GCATCGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
*** ** * * *
58165327 TATAATGTCTTGACATGGTCTTACATTATTTCCTTGCCTTATAGAACTTATCAATGCCATGTCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGTCTT
*
58165392 GGCATGGTCT
65 GGCATCGTCT
58165402 CATATGATAT
Statistics
Matches: 166, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
108 138 0.83
109 28 0.17
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGCCATGTCTTG
GCATCGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
Found at i:58165460 original size:47 final size:47
Alignment explanation
Indices: 58165394--58165619 Score: 195
Period size: 47 Copynumber: 4.6 Consensus size: 47
58165384 CATGTCTTGG
* * * * *
58165394 CATGGTCTCATATGATATCCTTATCTTACCAAATGCCATGTTCCGAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* * ***
58165441 TATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATG--CCTTGG
1 CATGGTCTTACATGGTATCCTTGTC-T-T---AC-CA--AATGCCATGTTCC-AAA
* * **
58165495 CAAGGTCTTACAACATGATATCCTTACCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTT---ACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
58165545 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
58165592 CATGGTCATACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
58165620 GTGCCAATGT
Statistics
Matches: 142, Mismatches: 23, Indels: 28
0.74 0.12 0.15
Matches are distributed among these distances:
47 82 0.58
48 1 0.01
49 10 0.07
50 8 0.06
51 3 0.02
52 4 0.03
53 3 0.02
54 7 0.05
55 10 0.07
56 1 0.01
57 13 0.09
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:58165469 original size:101 final size:104
Alignment explanation
Indices: 58165339--58165572 Score: 357
Period size: 104 Copynumber: 2.3 Consensus size: 104
58165329 TAATGTCTTG
** * * * *
58165339 ACATGGTCTTACATTATTTCCTTGCCTTATAGAACTTATCAATGCCATGTCTTGGCATGGTC-T-
1 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCAAGGTCTTA
* * *
58165402 C-ATATGATATCCTTATCTTACCAAATGCCATGTTCCGA
66 CAACATGATATCCTTACCTTACCAAATGCCATGTTCCAA
*
58165440 ATATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCAAGGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCAAGGTCTTA
58165505 CAACATGATATCCTTACCTTACCAAATGCCATGTTCCAA
66 CAACATGATATCCTTACCTTACCAAATGCCATGTTCCAA
58165544 ACATGGTCTTACATGGTATCCTTGTCTTA
1 ACATGGTCTTACATGGTATCCTTGTCTTA
58165573 CCAAATGCCA
Statistics
Matches: 119, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
101 55 0.46
102 1 0.01
103 1 0.01
104 62 0.52
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.36
Consensus pattern (104 bp):
ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCAAGGTCTTA
CAACATGATATCCTTACCTTACCAAATGCCATGTTCCAA
Found at i:58165840 original size:44 final size:44
Alignment explanation
Indices: 58165759--58165842 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 44
58165749 TCCTTAACCA
* * ** * *
58165759 TCAATTCTTCCTTAAATGCCATGTTATGATCATGGACTTTTCTG
1 TCAAGTCTTCCTTAAATGCCATGGTACAACCACGGACTTTTCTG
*
58165803 TCAAGTCTTCCTTAATTGCCATGGTACAACCACGGACTTT
1 TCAAGTCTTCCTTAAATGCCATGGTACAACCACGGACTTT
58165843 GAGATATCAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
44 33 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (44 bp):
TCAAGTCTTCCTTAAATGCCATGGTACAACCACGGACTTTTCTG
Found at i:58169059 original size:40 final size:40
Alignment explanation
Indices: 58168982--58169202 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
58168972 ACCCAAGTAT
* *
58168982 CTTCGGGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
*
58169021 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
58169061 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
58169101 CTTCGGGTCTTAGCCCGGATATAG-CAACTTGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
58169141 CTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
58169181 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
58169203 CATTCGAATA
Statistics
Matches: 161, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.07
40 146 0.91
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:58175530 original size:53 final size:53
Alignment explanation
Indices: 58175461--58175769 Score: 261
Period size: 53 Copynumber: 5.7 Consensus size: 53
58175451 TTTTCCTTTT
* * * * * *
58175461 TGAACTTACTATTGCCATGTCATGACATGGTCTTGCGTGGTATCC-TTGCCTTA
1 TGAACTCACTAATGCCATGTCTTGACATGGTCTTACATGGGA-CCTTTGCCTTA
* * *
58175514 TGAACTCACTAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTACCTTA
1 TGAACTCACTAATGCCATGTCTTGACATGGTCTTACATGGGACCTTTGCCTTA
* * *
58175567 TAGTAACTCA-TCAATACCATGTCATGACATGGTCTTACATGGTATCCTTT-CCTTA
1 T-G-AACTCACT-AATGCCATGTCTTGACATGGTCTTACATGGGA-CCTTTGCCTTA
* * * *
58175622 TGAACTCACCAATGCCATGCCTTGGCATTGTCTTACATGGGACCTTTGCCTTA
1 TGAACTCACTAATGCCATGTCTTGACATGGTCTTACATGGGACCTTTGCCTTA
* ***
58175675 TAGTAACTCA-TCAATGCCATGTCTTGACATGGTATTACATGATTTCCTTT-CCTTA
1 T-G-AACTCACT-AATGCCATGTCTTGACATGGTCTTACATG-GGACCTTTGCCTTA
* * * *
58175730 TAGAACTTA-TCAATGCCATGCCTTGGCATTGTCTTACATG
1 T-GAACTCACT-AATGCCATGTCTTGACATGGTCTTACATG
58175770 ATATCCTTAT
Statistics
Matches: 211, Mismatches: 34, Indels: 21
0.79 0.13 0.08
Matches are distributed among these distances:
52 7 0.03
53 80 0.38
54 36 0.17
55 78 0.37
56 10 0.05
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
TGAACTCACTAATGCCATGTCTTGACATGGTCTTACATGGGACCTTTGCCTTA
Found at i:58175598 original size:55 final size:53
Alignment explanation
Indices: 58175473--58175870 Score: 329
Period size: 55 Copynumber: 7.5 Consensus size: 53
58175463 AACTTACTAT
* * * * *
58175473 TGCCATGTCATGACATGGTCTTGCGTGGTATCCTTGCCTTAT-GAACTCA-CTAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTCCTTATAGAACTCATC-AA
* *
58175526 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTACCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTT-CCTTATAG-AACTCATCAA
* * * *
58175581 TACCATGTCATGACATGGTCTTACATGGTATCCTTTCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTTCCTTATAGAACTCATCAA
* * *
58175634 TGCCATGCCTTGGCATTGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTT-CCTTATAG-AACTCATCAA
* * * * *
58175689 TGCCATGTCTTGACATGGTATTACATGATTTCCTTTCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTTCCTTATAGAACTCATCAA
* * * *
58175743 TGCCATGCCTTGGCATTGTCTTACAT-G-A--TATCCTTAT----CTTA-CAAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACCTTTCCTTATAGAACTCATC-AA
** *
58175788 GTGCCATGTTCC-AAACATGGTCTTACATGGTATCCTTGT-CTTATAGAACTTATCAA
1 -TGCCATG--CCTTGACATGGTCTTACATGGTA-CCTT-TCCTTATAGAACTCATCAA
*
58175844 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
58175871 ATATCCTTAT
Statistics
Matches: 277, Mismatches: 43, Indels: 49
0.75 0.12 0.13
Matches are distributed among these distances:
44 1 0.00
45 6 0.02
46 7 0.03
47 12 0.04
48 3 0.01
49 9 0.03
52 15 0.05
53 72 0.26
54 48 0.17
55 86 0.31
56 17 0.06
57 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTTCCTTATAGAACTCATCAA
Found at i:58175643 original size:108 final size:108
Alignment explanation
Indices: 58175473--58175870 Score: 480
Period size: 108 Copynumber: 3.8 Consensus size: 108
58175463 AACTTACTAT
* * * *
58175473 TGCCATGTCATGACATGGTCTTGCGTGGTATCCTTGCCTTAT-GAACTCACTAATGCCATGCCTT
1 TGCCATGTCATGACATGGTCTTACATGGTATCCTTTCCTTATAGAACTCACCAATGCCATGCCTT
58175537 GGCATGGTCTTACATGGGACCTTTACCTTATAGTAACTCATCAA
66 GGCATGGTCTTACATGGGACCTTT-CCTTATAGTAACTCATCAA
*
58175581 TACCATGTCATGACATGGTCTTACATGGTATCCTTTCCTTAT-GAACTCACCAATGCCATGCCTT
1 TGCCATGTCATGACATGGTCTTACATGGTATCCTTTCCTTATAGAACTCACCAATGCCATGCCTT
*
58175645 GGCATTGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
66 GGCATGGTCTTACATGGGACCTTT-CCTTATAGTAACTCATCAA
* * * * * *
58175689 TGCCATGTCTTGACATGGTATTACATGATTTCCTTTCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCATGACATGGTCTTACATGGTATCCTTTCCTTATAGAACTCACCAATGCCATGCCTT
* * * *
58175754 GGCATTGTCTTACAT--GA--TATCCTTAT-CTTA--CA--AA
66 GGCATGGTCTTACATGGGACCTTTCCTTATAGTAACTCATCAA
* * *
58175788 GTGCCATGTTCCA-AACATGGTCTTACATGGTATCCTTGT-CTTATAGAACTTATCAATGCCATG
1 -TGCCATG-T-CATGACATGGTCTTACATGGTATCCTT-TCCTTATAGAACTCACCAATGCCATG
58175851 CCTTGGCATGGTCTTACATG
62 CCTTGGCATGGTCTTACATG
58175871 ATATCCTTAT
Statistics
Matches: 261, Mismatches: 23, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
99 2 0.01
100 7 0.03
101 65 0.25
102 2 0.01
103 2 0.01
104 6 0.02
105 2 0.01
107 2 0.01
108 138 0.53
109 35 0.13
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (108 bp):
TGCCATGTCATGACATGGTCTTACATGGTATCCTTTCCTTATAGAACTCACCAATGCCATGCCTT
GGCATGGTCTTACATGGGACCTTTCCTTATAGTAACTCATCAA
Found at i:58175813 original size:47 final size:46
Alignment explanation
Indices: 58175760--58175931 Score: 150
Period size: 47 Copynumber: 3.5 Consensus size: 46
58175750 CCTTGGCATT
58175760 GTCTTACATGATATCCTTATCTTACAAAGTGCCATGTTCCAAACATG
1 GTCTTACATGATATCCTTATCTTACAAA-TGCCATGTTCCAAACATG
* * ***
58175807 GTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATG--CCTTGGCATG
1 GTCTTACATGATATCCTTATC-T-T---AC--A--AATGCCATGTTCC-AAACATG
58175861 GTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAACATG
1 GTCTTACATGATATCCTTATCTTA-CAAATGCCATGTTCCAAACATG
* * *
58175908 GTATTACATGGTATCCTTGTCTTA
1 GTCTTACATGATATCCTTATCTTA
58175932 GTTCCAATGC
Statistics
Matches: 99, Mismatches: 13, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
46 9 0.09
47 44 0.44
48 4 0.04
49 2 0.02
50 1 0.01
52 3 0.03
53 3 0.03
54 24 0.24
55 7 0.07
56 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (46 bp):
GTCTTACATGATATCCTTATCTTACAAATGCCATGTTCCAAACATG
Found at i:58175824 original size:101 final size:101
Alignment explanation
Indices: 58175498--58175931 Score: 409
Period size: 101 Copynumber: 4.2 Consensus size: 101
58175488 TGGTCTTGCG
* * *
58175498 TGGTATCCTTGCCTTAT-GAACTCA-CTAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTT
1 TGGTATCCTTGTCTTATAGAACTTATC-AATGCCATGCCTTGGCATGGTCTTACAT--GA--TAT
* * * * *
58175561 ACCTTATAGTAACTCATCAATACCATG-T-CATGACATGGTCTTACA
61 -CCTTAT-CTTAC-CA--AATGCCATGTTCCA-AACATGGTATTACA
* * * *
58175606 TGGTATCCTT-TCCTTAT-GAACTCACCAATGCCATGCCTTGGCATTGTCTTACATGGGACCTTT
1 TGGTATCCTTGT-CTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACAT--GA--TAT
* * ***
58175669 GCCTTATAGTAACTCATCAATGCCATG-TCTTGACATGGTATTACA
61 -CCTTAT-CTTAC-CA--AATGCCATGTTCCAAACATGGTATTACA
* * *
58175714 TGATTTCCTT-TCCTTATAGAACTTATCAATGCCATGCCTTGGCATTGTCTTACATGATATCCTT
1 TGGTATCCTTGT-CTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
*
58175778 ATCTTA-CAAAGTGCCATGTTCCAAACATGGTCTTACA
65 ATCTTACCAAA-TGCCATGTTCCAAACATGGTATTACA
58175815 TGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTA
1 TGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTA
58175880 TCTTACCAAATGCCATGTTCCAAACATGGTATTACA
66 TCTTACCAAATGCCATGTTCCAAACATGGTATTACA
58175916 TGGTATCCTTGTCTTA
1 TGGTATCCTTGTCTTA
58175932 GTTCCAATGC
Statistics
Matches: 296, Mismatches: 22, Indels: 23
0.87 0.06 0.07
Matches are distributed among these distances:
99 2 0.01
100 7 0.02
101 122 0.41
102 5 0.02
103 2 0.01
104 6 0.02
105 2 0.01
107 2 0.01
108 112 0.38
109 36 0.12
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (101 bp):
TGGTATCCTTGTCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTTA
TCTTACCAAATGCCATGTTCCAAACATGGTATTACA
Found at i:58180618 original size:40 final size:40
Alignment explanation
Indices: 58180563--58180756 Score: 307
Period size: 40 Copynumber: 4.8 Consensus size: 40
58180553 GCATTTGTAT
*
58180563 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTCG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
58180603 ATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* *
58180643 ATATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
*
58180683 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
* ** *
58180723 CTATGCCCGGGCTAAGACCCGAAGGCAATTGTGC
1 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
58180757 TTGTGGTAAT
Statistics
Matches: 141, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG
Found at i:58185566 original size:37 final size:37
Alignment explanation
Indices: 58185522--58185594 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
58185512 ATCATCCTTT
58185522 TTTTCATTGTTTTCACACAAAGAATCCATTTATCCTC
1 TTTTCATTGTTTTCACACAAAGAATCCATTTATCCTC
* *
58185559 TTTTCATTGTTTTCACATAGAGAATCCATTTATCCT
1 TTTTCATTGTTTTCACACAAAGAATCCATTTATCCT
58185595 AAAGCATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.45
Consensus pattern (37 bp):
TTTTCATTGTTTTCACACAAAGAATCCATTTATCCTC
Found at i:58186528 original size:27 final size:26
Alignment explanation
Indices: 58186480--58186531 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
58186470 GCGAGGCTGC
*
58186480 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
58186506 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
58186532 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:58186837 original size:19 final size:19
Alignment explanation
Indices: 58186794--58186839 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
58186784 TGGGCCCGTT
*
58186794 GGCCCATTGGCTCGTTTTC
1 GGCCCATTGGCCCGTTTTC
**
58186813 AACCCATTGGCCCGTTTTC
1 GGCCCATTGGCCCGTTTTC
58186832 GGCCCATT
1 GGCCCATT
58186840 AAGCCCAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.11, C:0.35, G:0.22, T:0.33
Consensus pattern (19 bp):
GGCCCATTGGCCCGTTTTC
Found at i:58187438 original size:320 final size:320
Alignment explanation
Indices: 58186856--58187495 Score: 1244
Period size: 320 Copynumber: 2.0 Consensus size: 320
58186846 AAAAAAATCG
*
58186856 TTGTGCACGAAAATGCACACTTTGCACTCTAATCATCCAAATGCACCATATTCATTAACAACTGT
1 TTGTGCACGAAAATGCACACTCTGCACTCTAATCATCCAAATGCACCATATTCATTAACAACTGT
*
58186921 CTCACGAGCGCTCGCACGCTCGCGAGTTCACAAAATACCAACGTTTCGGTATTTCGGCTTTTACC
66 CTCACGAGCGCTCGCACGCTCGCGAGTTCACAAAATACCAACGTTTCGGTATTTCGGATTTTACC
*
58186986 AATTCAGTCTAAGGGAGGGTGTCGTTTACACACCTGGTTGATGACGATTGATGACGATATCTCCC
131 AATTCAATCTAAGGGAGGGTGTCGTTTACACACCTGGTTGATGACGATTGATGACGATATCTCCC
58187051 ACGCGATAATCCTACAATCGATCACTAACACATTAGACTTACGAATTAACGATAACTAACATAAA
196 ACGCGATAATCCTACAATCGATCACTAACACATTAGACTTACGAATTAACGATAACTAACATAAA
58187116 TCCACGTCAACTAACCCAATCATCACACAAGTTAGTCATTTACGCACGAGGGGAAAAATA
261 TCCACGTCAACTAACCCAATCATCACACAAGTTAGTCATTTACGCACGAGGGGAAAAATA
58187176 TTGTGCACGAAAATGCACACTCTGCACTCTAATCATCCAAATGCACCATATTCATTAACAACTGT
1 TTGTGCACGAAAATGCACACTCTGCACTCTAATCATCCAAATGCACCATATTCATTAACAACTGT
58187241 CTCACGAGCGCTCGCACGCTCGCGAGTTCACAAAATACCAACGTTTCGGTATTTCGGATTTTACC
66 CTCACGAGCGCTCGCACGCTCGCGAGTTCACAAAATACCAACGTTTCGGTATTTCGGATTTTACC
58187306 AATTCAATCTAAGGGAGGGTGTCGTTTACACACCTGGTTGATGACGATTGATGACGATATCTCCC
131 AATTCAATCTAAGGGAGGGTGTCGTTTACACACCTGGTTGATGACGATTGATGACGATATCTCCC
58187371 ACGCGATAATCCTACAATCGATCACTAACACATTAGACTTACGAATTAACGATAACTAACATAAA
196 ACGCGATAATCCTACAATCGATCACTAACACATTAGACTTACGAATTAACGATAACTAACATAAA
*
58187436 TCCACGTCAACTAACCCAATCATCACACAAGTTAGTCATTTACGCACGAGGGGCAAAATA
261 TCCACGTCAACTAACCCAATCATCACACAAGTTAGTCATTTACGCACGAGGGGAAAAATA
58187496 GTCATTTAAC
Statistics
Matches: 316, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
320 316 1.00
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (320 bp):
TTGTGCACGAAAATGCACACTCTGCACTCTAATCATCCAAATGCACCATATTCATTAACAACTGT
CTCACGAGCGCTCGCACGCTCGCGAGTTCACAAAATACCAACGTTTCGGTATTTCGGATTTTACC
AATTCAATCTAAGGGAGGGTGTCGTTTACACACCTGGTTGATGACGATTGATGACGATATCTCCC
ACGCGATAATCCTACAATCGATCACTAACACATTAGACTTACGAATTAACGATAACTAACATAAA
TCCACGTCAACTAACCCAATCATCACACAAGTTAGTCATTTACGCACGAGGGGAAAAATA
Found at i:58190345 original size:49 final size:52
Alignment explanation
Indices: 58190273--58190439 Score: 184
Period size: 52 Copynumber: 3.3 Consensus size: 52
58190263 ACTAGTGACT
*
58190273 CAAGTGTAGTACTATCTGAAGGCCACTTTGA-GAAG-AGATAG-GTTGGTCA
1 CAAGTGTGGTACTATCTGAAGGCCACTTTGATGAAGAAGATAGCGTTGGTCA
* * *
58190322 CAAGTGTGGTACTATGTGAAGGCCA-TTTTATGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATCTGAAGGCCACTTTGATGAAG-AAGATAGCGTTGGTCA
* * * * *
58190374 CATGTGTGGTACTATCTGAAGGCCACTTTG-TGAAAAAGGTAGC-TTTGACTA
1 CAAGTGTGGTACTATCTGAAGGCCACTTTGATGAAGAAGATAGCGTTGGTC-A
*
58190425 CAAGTATGGTACTAT
1 CAAGTGTGGTACTAT
58190440 GTACAGGCTA
Statistics
Matches: 99, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
48 4 0.04
49 27 0.27
50 4 0.04
51 27 0.27
52 34 0.34
53 3 0.03
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (52 bp):
CAAGTGTGGTACTATCTGAAGGCCACTTTGATGAAGAAGATAGCGTTGGTCA
Found at i:58190438 original size:51 final size:51
Alignment explanation
Indices: 58190268--58190439 Score: 181
Period size: 51 Copynumber: 3.4 Consensus size: 51
58190258 ATGTCACTAG
* * * *
58190268 TGACT-CAAGTGTAGTACTATCTGAAGGCCACTTTGAG-AAGAGATAGGTT
1 TGACTACAAGTGTGGTACTATCTGAAGGCCACTTTGTGAAAAAGATAGCTT
* * * * *
58190317 GGTC-ACAAGTGTGGTACTATGTGAAGGCCATTTTATGAAGAAAGATAGCTT
1 TGACTACAAGTGTGGTACTATCTGAAGGCCACTTTGTGAA-AAAGATAGCTT
* * *
58190368 TG-GTCACATGTGTGGTACTATCTGAAGGCCACTTTGTGAAAAAGGTAGCTT
1 TGACT-ACAAGTGTGGTACTATCTGAAGGCCACTTTGTGAAAAAGATAGCTT
*
58190419 TGACTACAAGTATGGTACTAT
1 TGACTACAAGTGTGGTACTAT
58190440 GTACAGGCTA
Statistics
Matches: 98, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
49 29 0.30
50 1 0.01
51 36 0.37
52 32 0.33
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (51 bp):
TGACTACAAGTGTGGTACTATCTGAAGGCCACTTTGTGAAAAAGATAGCTT
Found at i:58195662 original size:25 final size:25
Alignment explanation
Indices: 58195628--58195677 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
58195618 GTTAATATAC
58195628 GTGGGTGTTATGTAAGTCCTAAGCT
1 GTGGGTGTTATGTAAGTCCTAAGCT
58195653 GTGGGTGTTATGTAAGTCCTAAGCT
1 GTGGGTGTTATGTAAGTCCTAAGCT
58195678 AACTCTTGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.12, G:0.32, T:0.36
Consensus pattern (25 bp):
GTGGGTGTTATGTAAGTCCTAAGCT
Found at i:58203000 original size:22 final size:21
Alignment explanation
Indices: 58202967--58203011 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
58202957 TTGACAAAAA
58202967 AACAGAAAAAATAAATAAAGC
1 AACAGAAAAAATAAATAAAGC
* *
58202988 AACATAAATAAATAATTAAAGC
1 AACAGAAA-AAATAAATAAAGC
58203010 AA
1 AA
58203012 AACTTGTCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.69, C:0.09, G:0.07, T:0.16
Consensus pattern (21 bp):
AACAGAAAAAATAAATAAAGC
Done.