Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 173 of 284
Found at i:58205973 original size:21 final size:21
Alignment explanation
Indices: 58205931--58205973 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
58205921 GTGTTGTGTC
*
58205931 TAATTTATCTCATATTTCATA
1 TAATTTATCTCATAATTCATA
*
58205952 TAATTTGTCATCATAATT-ATA
1 TAATTTATC-TCATAATTCATA
58205973 T
1 T
58205974 TTATTAAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.35, C:0.12, G:0.02, T:0.51
Consensus pattern (21 bp):
TAATTTATCTCATAATTCATA
Found at i:58219612 original size:25 final size:26
Alignment explanation
Indices: 58219584--58219636 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
58219574 GCCTAGCCTC
58219584 TTTTAATAAA-TGGGGCAAAGCCCTT
1 TTTTAATAAACTGGGGCAAAGCCCTT
*
58219609 TTTTAGTAAACTGGGGCAAAGCCCTT
1 TTTTAATAAACTGGGGCAAAGCCCTT
58219635 TT
1 TT
58219637 CGCACTTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (26 bp):
TTTTAATAAACTGGGGCAAAGCCCTT
Found at i:58219711 original size:21 final size:21
Alignment explanation
Indices: 58219684--58219744 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
58219674 TATAATGAGT
58219684 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
58219705 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
58219726 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
58219745 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:58219743 original size:10 final size:10
Alignment explanation
Indices: 58219684--58219744 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
58219674 TATAATGAGT
58219684 ATATCATAG-C
1 ATATCAT-GTC
58219694 ATATCATGTGC
1 ATATCATGT-C
* **
58219705 ATCTCATAAC
1 ATATCATGTC
58219715 ATATCATGTGC
1 ATATCATGT-C
58219726 ATATCATGTC
1 ATATCATGTC
58219736 ATATCATGT
1 ATATCATGT
58219745 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:58225797 original size:22 final size:22
Alignment explanation
Indices: 58225769--58225814 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
58225759 ATAATTTTAT
58225769 TAAATGATATAACGTATGACAG
1 TAAATGATATAACGTATGACAG
*
58225791 TAAATGATATAATGTATGACAG
1 TAAATGATATAACGTATGACAG
58225813 TA
1 TA
58225815 TGATCTTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.46, C:0.07, G:0.17, T:0.30
Consensus pattern (22 bp):
TAAATGATATAACGTATGACAG
Found at i:58225885 original size:39 final size:39
Alignment explanation
Indices: 58225836--58225950 Score: 158
Period size: 39 Copynumber: 2.9 Consensus size: 39
58225826 AAAATGGGAT
* * *
58225836 ACTGATTCTACTAAAAGTATGATCAATTGAGCTATACCC
1 ACTGATTCTACTGAAAGTATGCTCAATTGAGCCATACCC
* * * *
58225875 ACTGAATCTACTGAAAGTATGCTCAATCGAACCATACCT
1 ACTGATTCTACTGAAAGTATGCTCAATTGAGCCATACCC
*
58225914 ACTGATTCTACTGAAAGTATGCTCAAGTGAGCCATAC
1 ACTGATTCTACTGAAAGTATGCTCAATTGAGCCATAC
58225951 GGATTCTGAC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.28
Consensus pattern (39 bp):
ACTGATTCTACTGAAAGTATGCTCAATTGAGCCATACCC
Found at i:58226048 original size:27 final size:27
Alignment explanation
Indices: 58226010--58226063 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
58226000 TCGATTTCTT
*
58226010 TGCTGTCCATCAGGCCCTGAATAACAA
1 TGCTGTCCATCAAGCCCTGAATAACAA
58226037 TGCTGTCCATCAAGCCCTGAATAACAA
1 TGCTGTCCATCAAGCCCTGAATAACAA
58226064 CTCTGAACCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (27 bp):
TGCTGTCCATCAAGCCCTGAATAACAA
Found at i:58240393 original size:18 final size:18
Alignment explanation
Indices: 58240370--58240408 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
58240360 TAAAGAAGAT
* *
58240370 AAATAAAGATAATAGTAA
1 AAATAAAAATAATAATAA
*
58240388 AAATAAAAATGATAATAA
1 AAATAAAAATAATAATAA
58240406 AAA
1 AAA
58240409 AAGTTCTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAAATAATAATAA
Found at i:58240410 original size:21 final size:22
Alignment explanation
Indices: 58240368--58240410 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
58240358 CTTAAAGAAG
**
58240368 ATAAATAAAGATAATAGTAAAA
1 ATAAATAAAGATAATAAAAAAA
*
58240390 ATAAA-AATGATAATAAAAAAA
1 ATAAATAAAGATAATAAAAAAA
58240411 GTTCTTAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (22 bp):
ATAAATAAAGATAATAAAAAAA
Found at i:58255309 original size:47 final size:47
Alignment explanation
Indices: 58255231--58255610 Score: 688
Period size: 47 Copynumber: 8.1 Consensus size: 47
58255221 CCCTTCGGGA
* * * * * *
58255231 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58255278 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58255325 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58255372 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58255419 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58255466 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58255513 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58255560 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58255607 CTTA
1 CTTA
58255611 AACAAAACTC
Statistics
Matches: 323, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 323 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58256712 original size:85 final size:85
Alignment explanation
Indices: 58256583--58256761 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
58256573 TATTTTATTG
*
58256583 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
58256648 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
58256668 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
58256733 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
58256753 CCCATGCTC
1 CCCATGCTC
58256762 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:58258386 original size:40 final size:40
Alignment explanation
Indices: 58258178--58258440 Score: 300
Period size: 40 Copynumber: 6.6 Consensus size: 40
58258168 CCAGCATGAT
* * *
58258178 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
58258218 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
58258258 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
58258298 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
58258338 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
58258379 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
58258419 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
58258441 CATCATTCGA
Statistics
Matches: 192, Mismatches: 26, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
39 3 0.02
40 169 0.88
41 20 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:58258787 original size:29 final size:29
Alignment explanation
Indices: 58258748--58258826 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
58258738 CTTAATAATC
*
58258748 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
58258778 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
58258807 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
58258827 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:58258869 original size:43 final size:43
Alignment explanation
Indices: 58258808--58258910 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
58258798 TGCATTTCAA
58258808 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
58258851 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
58258894 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
58258911 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:58260889 original size:37 final size:37
Alignment explanation
Indices: 58260848--58261123 Score: 534
Period size: 37 Copynumber: 7.5 Consensus size: 37
58260838 ACATGAAGTT
*
58260848 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
58260885 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
58260922 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
58260959 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
58260996 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
58261033 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
58261070 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
*
58261107 ATCGGGTCTTACTCGGA
1 ATCGGGTCTTACCCGGA
58261124 ATATATTTCC
Statistics
Matches: 237, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 237 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
Found at i:58261468 original size:47 final size:47
Alignment explanation
Indices: 58261326--58261472 Score: 177
Period size: 47 Copynumber: 3.1 Consensus size: 47
58261316 CATACATATT
* * * *
58261326 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCAAATTCA
* * * *
58261373 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCAAATTCA
* * ** *
58261420 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCAAAGTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCAAATTCA
58261467 TCACAT
1 TCACAT
58261473 AAAATCCTAA
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 84 1.00
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCAAATTCA
Found at i:58268070 original size:39 final size:40
Alignment explanation
Indices: 58267971--58268114 Score: 145
Period size: 40 Copynumber: 3.6 Consensus size: 40
58267961 CGAATGATGT
* * *
58267971 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAA
* * *
58268011 CCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-A
*
58268051 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAA
*
58268090 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
58268115 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
39 34 0.39
40 43 0.49
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAA
Found at i:58268128 original size:40 final size:39
Alignment explanation
Indices: 58268023--58268121 Score: 110
Period size: 39 Copynumber: 2.5 Consensus size: 39
58268013 AGACTAAGAT
** * *
58268023 CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAGC
1 CCGAAGGCATTTGAACGAGTTACTATA-ACCGGGCTAAGC
** *
58268062 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAG-C
58268102 CCGAAGGCATTTGAACGAGT
1 CCGAAGGCATTTGAACGAGT
58268122 AGCTATATCC
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
39 33 0.62
40 20 0.38
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGAAGGCATTTGAACGAGTTACTATAACCGGGCTAAGC
Found at i:58268133 original size:79 final size:80
Alignment explanation
Indices: 58267970--58268120 Score: 182
Period size: 79 Copynumber: 1.9 Consensus size: 80
58267960 TCGAATGATG
*
58267970 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCAGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCAGACTAAGATCCGAAGGCATTT
**
58268035 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * * *
58268050 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCAGACTAAGAT-CCGAAGGCAT
58268112 TTGAACGAG
64 TTGAACGAG
58268121 TAGCTATATC
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.02
79 41 0.68
80 18 0.30
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCAGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:58269814 original size:24 final size:24
Alignment explanation
Indices: 58269782--58269831 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
58269772 GACCGGAGTA
58269782 CAAATTGCACCAAGAGTCATAATC
1 CAAATTGCACCAAGAGTCATAATC
58269806 CAAATTGCACCAAGAGTCATAATC
1 CAAATTGCACCAAGAGTCATAATC
58269830 CA
1 CA
58269832 GAAACCTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.26, G:0.12, T:0.20
Consensus pattern (24 bp):
CAAATTGCACCAAGAGTCATAATC
Found at i:58271062 original size:13 final size:13
Alignment explanation
Indices: 58271046--58271078 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
58271036 TTTGATTAAA
*
58271046 TTAGTTAATTAGT
1 TTAGATAATTAGT
58271059 TTAGATAATTAGT
1 TTAGATAATTAGT
58271072 TTA-ATAA
1 TTAGATAA
58271079 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:58271369 original size:5 final size:5
Alignment explanation
Indices: 58271359--58271383 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
58271349 TTTTTCTTGC
58271359 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
58271384 TACTATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:58274913 original size:20 final size:21
Alignment explanation
Indices: 58274884--58274925 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
58274874 CCTCTCCGCG
58274884 TCACACGCCCGTGT-TCGCCA
1 TCACACGCCCGTGTGTCGCCA
*
58274904 TCACATGCCCGTGTGTCGCCA
1 TCACACGCCCGTGTGTCGCCA
58274925 T
1 T
58274926 ACAGCAGCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.14, C:0.40, G:0.21, T:0.24
Consensus pattern (21 bp):
TCACACGCCCGTGTGTCGCCA
Found at i:58276201 original size:6 final size:6
Alignment explanation
Indices: 58276190--58276279 Score: 87
Period size: 6 Copynumber: 15.2 Consensus size: 6
58276180 ATCCTCCTAC
*
58276190 TTTATT TTTATT TTTATT TTTA-- TTTATT CTTATT TTTA-T TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* * * * *
58276235 TTATTTAT TTTATT CTTATT TTTCTT TTTCTT TTTATT TTCATT T
1 TT-TAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT T
58276280 CAATTTTCTT
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
4 4 0.06
5 5 0.07
6 54 0.77
7 4 0.06
8 3 0.04
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:58276216 original size:22 final size:22
Alignment explanation
Indices: 58276190--58276279 Score: 87
Period size: 22 Copynumber: 4.1 Consensus size: 22
58276180 ATCCTCCTAC
58276190 TTTATTTTTATTTTTATTTTTA
1 TTTATTTTTATTTTTATTTTTA
*
58276212 TTTATTCTTATTTTTA-TTTTA
1 TTTATTTTTATTTTTATTTTTA
* *
58276233 TTT-TATTTA-TTTTATTCTTATT
1 TTTATTTTTATTTTTATT-TT-TA
* * *
58276255 TTTCTTTTTCTTTTTATTTTCA
1 TTTATTTTTATTTTTATTTTTA
58276277 TTT
1 TTT
58276280 CAATTTTCTT
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
19 5 0.09
20 5 0.09
21 10 0.18
22 22 0.40
23 6 0.11
24 7 0.13
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTATTTTTATTTTTATTTTTA
Found at i:58276217 original size:16 final size:16
Alignment explanation
Indices: 58276196--58276266 Score: 85
Period size: 16 Copynumber: 4.6 Consensus size: 16
58276186 CTACTTTATT
*
58276196 TTTATTTTTATTTTTA
1 TTTATTCTTATTTTTA
58276212 TTTATTCTTATTTTTA
1 TTTATTCTTATTTTTA
*
58276228 TTTTATT-TTATTTAT-
1 -TTTATTCTTATTTTTA
*
58276243 TTTATTCTTATTTTTC
1 TTTATTCTTATTTTTA
58276259 TTT-TTCTT
1 TTTATTCTT
58276267 TTTATTTTCA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
14 6 0.12
15 12 0.24
16 25 0.51
17 6 0.12
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTATTCTTATTTTTA
Found at i:58277812 original size:40 final size:40
Alignment explanation
Indices: 58277768--58278031 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
58277758 GCTCCTCGTT
* *
58277768 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
58277808 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
58277848 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
58277888 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
58277928 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
58277967 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
58278008 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
58278032 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:58281516 original size:13 final size:13
Alignment explanation
Indices: 58281500--58281532 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
58281490 TTTGATTAAA
*
58281500 TTAGTTAATTAGT
1 TTAGATAATTAGT
58281513 TTAGATAATTAGT
1 TTAGATAATTAGT
58281526 TTA-ATAA
1 TTAGATAA
58281533 ACAAACCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:58285846 original size:19 final size:19
Alignment explanation
Indices: 58285822--58285862 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
58285812 TTAAATTGTT
*
58285822 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
58285841 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
58285860 TTA
1 TTA
58285863 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:58286337 original size:89 final size:89
Alignment explanation
Indices: 58286186--58286358 Score: 319
Period size: 89 Copynumber: 1.9 Consensus size: 89
58286176 AATTGGGTGG
* *
58286186 TGAAAACAAAGTTTTCACGCTTTACTTTCCTTCAATTGCCGTAGCTTAAAGAACAAAGAAACAAT
1 TGAAAACAAAGTTTTCACGCTTTAATTTCCTTCAATTGCCGAAGCTTAAAGAACAAAGAAACAAT
58286251 TAGGCTCTATGGTGTTCGGTGTGC
66 TAGGCTCTATGGTGTTCGGTGTGC
*
58286275 TGAAAACAAAGTTTTCACGCTTTAATTTCCTTCAATTGCCGAAGGTTAAAGAACAAAGAAACAAT
1 TGAAAACAAAGTTTTCACGCTTTAATTTCCTTCAATTGCCGAAGCTTAAAGAACAAAGAAACAAT
58286340 TAGGCTCTATGGTGTTCGG
66 TAGGCTCTATGGTGTTCGG
58286359 CCCTTGTGAA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 81 1.00
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31
Consensus pattern (89 bp):
TGAAAACAAAGTTTTCACGCTTTAATTTCCTTCAATTGCCGAAGCTTAAAGAACAAAGAAACAAT
TAGGCTCTATGGTGTTCGGTGTGC
Found at i:58287734 original size:39 final size:40
Alignment explanation
Indices: 58287680--58287819 Score: 223
Period size: 39 Copynumber: 3.5 Consensus size: 40
58287670 TAATGGAGAA
58287680 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTCCCGAAGGCATTCGTGCTGGTG
58287719 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
58287758 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCTAAAGTCCCGAAGGCATTCGTGCTGGTG
58287797 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-TAAAGTCCCG
58287820 CATGCTTTGT
Statistics
Matches: 96, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
39 74 0.77
40 22 0.23
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.30
Consensus pattern (40 bp):
TTATATCCGGGCTAAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:58290402 original size:150 final size:150
Alignment explanation
Indices: 58290172--58290470 Score: 580
Period size: 150 Copynumber: 2.0 Consensus size: 150
58290162 CATTGAAATC
58290172 TTGCTAGGCAAAATTAAAAAGTGGCTGAATAGTTGTAGTTACAAAAAATGAGTCCTTGCATGTCA
1 TTGCTAGGCAAAATTAAAAAGTGGCTGAATAGTTGTAGTTACAAAAAATGAGTCCTTGCATGTCA
*
58290237 AATAGCCCATCTTTAAGTGTAGTGGGCGTAATGATGATGAATCATGAATAAAATATGATTTTATT
66 AATAGCCCACCTTTAAGTGTAGTGGGCGTAATGATGATGAATCATGAATAAAATATGATTTTATT
58290302 ATTTTTATTTTATAAGTTAG
131 ATTTTTATTTTATAAGTTAG
*
58290322 TTGCTAGGCAAAATTAAAAAGTTGCTGAATAGTTGTAGTTACAAAAAATGAGTCCTTGCATGTCA
1 TTGCTAGGCAAAATTAAAAAGTGGCTGAATAGTTGTAGTTACAAAAAATGAGTCCTTGCATGTCA
58290387 AATAGCCCACCTTTAAGTGTAGTGGGCGTAATGATGATGAATCATGAATAAAATATGATTTTATT
66 AATAGCCCACCTTTAAGTGTAGTGGGCGTAATGATGATGAATCATGAATAAAATATGATTTTATT
58290452 ATTTTTATTTTATAAGTTA
131 ATTTTTATTTTATAAGTTA
58290471 AATTGTTTTA
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 147 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (150 bp):
TTGCTAGGCAAAATTAAAAAGTGGCTGAATAGTTGTAGTTACAAAAAATGAGTCCTTGCATGTCA
AATAGCCCACCTTTAAGTGTAGTGGGCGTAATGATGATGAATCATGAATAAAATATGATTTTATT
ATTTTTATTTTATAAGTTAG
Found at i:58290502 original size:19 final size:19
Alignment explanation
Indices: 58290478--58290518 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
58290468 TTAAATTGTT
*
58290478 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
58290497 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
58290516 TTA
1 TTA
58290519 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:58292560 original size:39 final size:39
Alignment explanation
Indices: 58292506--58292718 Score: 390
Period size: 39 Copynumber: 5.5 Consensus size: 39
58292496 TTATATGATT
58292506 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
58292545 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
58292584 TGGTGTTATATTCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
58292623 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
58292662 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
58292701 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
58292719 TAAAGTCCCG
Statistics
Matches: 169, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 169 1.00
ACGTcount: A:0.18, C:0.23, G:0.31, T:0.28
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:58296439 original size:10 final size:11
Alignment explanation
Indices: 58296419--58296444 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
58296409 ATAGAAACTA
58296419 TTTTTATTTTT
1 TTTTTATTTTT
58296430 TTTTTATTTTT
1 TTTTTATTTTT
58296441 TTTT
1 TTTT
58296445 GTTGATAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTATTTTT
Found at i:58296859 original size:19 final size:19
Alignment explanation
Indices: 58296835--58296875 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
58296825 TTAAATTGTT
*
58296835 TTATAATATGAAATGAATA
1 TTATAATATGAAAGGAATA
*
58296854 TTATAATATTAAAGGAATA
1 TTATAATATGAAAGGAATA
58296873 TTA
1 TTA
58296876 ATATTATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (19 bp):
TTATAATATGAAAGGAATA
Found at i:58298915 original size:39 final size:39
Alignment explanation
Indices: 58298861--58299034 Score: 312
Period size: 39 Copynumber: 4.5 Consensus size: 39
58298851 TTATATGATT
58298861 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
58298900 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
58298939 TGGTATTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
*
58298978 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
* *
58299017 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
58299035 TAAAGTCCCG
Statistics
Matches: 130, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 130 1.00
ACGTcount: A:0.18, C:0.24, G:0.30, T:0.28
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGC
Found at i:58302775 original size:94 final size:94
Alignment explanation
Indices: 58302627--58302823 Score: 286
Period size: 94 Copynumber: 2.1 Consensus size: 94
58302617 CCCATACCCT
* * *
58302627 TGAAGTTGCAGTGGGACGGATTGAAGTTATTATGGCAAATCTTATTTCCCTGAAGTTGTAATGGA
1 TGAAGTTGCAGTAGGACGGATTGAAGTTATTATGGCAAATCTTATCTCCCTGAAGTTGCAATGGA
* *
58302692 GTAGATTAAAGCCACAAACCTTCTCTTCC
66 GTAGATTAAAGCCACAAACCTTATCTCCC
* ** *
58302721 TGAAGTTGCAGTAGGACGGATTGAAGTTATTATGGCGAATCTTATCTCTTTGAAGTTGCAGTGGA
1 TGAAGTTGCAGTAGGACGGATTGAAGTTATTATGGCAAATCTTATCTCCCTGAAGTTGCAATGGA
* * *
58302786 GTAGATTAAAGCTACAGATCTTATCTCCC
66 GTAGATTAAAGCCACAAACCTTATCTCCC
58302815 TGAAGTTGC
1 TGAAGTTGC
58302824 TGTGGAGTAG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 91 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (94 bp):
TGAAGTTGCAGTAGGACGGATTGAAGTTATTATGGCAAATCTTATCTCCCTGAAGTTGCAATGGA
GTAGATTAAAGCCACAAACCTTATCTCCC
Found at i:58302822 original size:44 final size:44
Alignment explanation
Indices: 58302665--58303100 Score: 180
Period size: 44 Copynumber: 9.5 Consensus size: 44
58302655 ATTATGGCAA
* * * * * *
58302665 ATCTTATTTCCCTGAAGTTGTAATGGAGTAGATTAAAGCCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAG
* * * * * * *
58302709 ACCTTCTCTTCCTGAAGTTGCAGTAGGA-CGGATTGAAGTTATTATGGCG
1 ATCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATTAAAGCTA-CA----G
** *
58302758 AATCTTATCTCTTTGAAGTTGCAGTGGAGTAGATTAAAGCTACAG
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAG
* * * * *
58302803 ATCTTATCTCCCTGAAGTTGCTGTGGAGTAGATCGAAA-ATCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAAAGCT-ACAG
* * * * * *
58302848 ACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGCCACTAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC-AG
* * * *
58302893 -TCTTATCTCCTTGAAGTTGCAGTAGAGCAGACTGAAGAC-AGCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CTA-CAG
* * * * * *
58302937 ATCTTATTTCACTAAAGTTGCAGTCGAACAGATCAAAGCTACGAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC-AG
* * * * * *
58302982 TTATAAATCTTATGTCGCTGAAGTTGAAGTGGAGTAGATTGAAGATA-ACG
1 ------ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACA-G
** * * * *
58303032 AATCTTATCTCTTTGAAGTTGCAATAGAGCAGATTAAAGCTATAA
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAG
* **
58303077 ACCTTATCTTGCTGAAGTTGCAGT
1 ATCTTATCTCCCTGAAGTTGCAGT
58303101 AAAGCAGTGG
Statistics
Matches: 288, Mismatches: 79, Indels: 50
0.69 0.19 0.12
Matches are distributed among these distances:
44 117 0.41
45 105 0.36
46 1 0.00
49 5 0.02
50 29 0.10
51 31 0.11
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAG
Found at i:58302943 original size:89 final size:89
Alignment explanation
Indices: 58302758--58303107 Score: 247
Period size: 89 Copynumber: 3.9 Consensus size: 89
58302748 TATTATGGCG
* * * *
58302758 AATCTTATCTCTTTGAAGTTGCAGTGGAGTAGATTAAAGCTACAGATCTTATCTCCCTGAAGTTG
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAGATCTTATCTCCCTGAAGTTG
* * *
58302823 CTGTGGAGTAGATCGAAAATCACA
66 CAGTAGAGCAGATCGAAAATCACA
* * * *
58302847 AACCTTATCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAGCCACTAG-TCTTATCTCCTTGAAGTT
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCAC-AGATCTTATCTCCCTGAAGTT
*
58302911 GCAGTAGAGCAGA-CTGAAGA-CAGCA
65 GCAGTAGAGCAGATC-GAAAATCA-CA
* * * * * * * * * *
58302936 GATCTTATTTCACTAAAGTTGCAGTCGAACAGATCAAAGCTACGAGTTATAAATCTTATGTCGCT
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCAC-AG------ATCTTATCTCCCT
* * * * * * *
58303001 GAAGTTGAAGTGGAGTAGATTGAAGATAACG
59 GAAGTTGCAGTAGAGCAGATCGAAAATCACA
* * * * * * **
58303032 AATCTTATCTCTTTGAAGTTGCAATAGAGCAGATTAAAGCTATAAACCTTATCTTGCTGAAGTTG
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAGATCTTATCTCCCTGAAGTTG
*
58303097 CAGTAAAGCAG
66 CAGTAGAGCAG
58303108 TGGAGCAGTT
Statistics
Matches: 198, Mismatches: 51, Indels: 24
0.73 0.19 0.09
Matches are distributed among these distances:
88 3 0.02
89 127 0.64
90 2 0.01
95 1 0.01
96 64 0.32
97 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (89 bp):
AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAGATCTTATCTCCCTGAAGTTG
CAGTAGAGCAGATCGAAAATCACA
Found at i:58303066 original size:45 final size:44
Alignment explanation
Indices: 58302987--58303107 Score: 100
Period size: 45 Copynumber: 2.7 Consensus size: 44
58302977 ACGAGTTATA
* * * * *
58302987 AATCTTATGTCGCTGAAGTTGAAGTGGAGTAGATTGAAGATAACG
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGAT-ACG
* * * * **
58303032 AATCTTATCTCTTTGAAGTTGCAATAGAGCAGATTAAAGCTATA
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGATACG
* *
58303076 AACCTTATCT-TGCTGAAGTTGCAGTAAAGCAG
1 AATCTTATCTCT-CTGAAGTTGCAGTAGAGCAG
58303108 TGGAGCAGTT
Statistics
Matches: 60, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
43 1 0.02
44 27 0.45
45 32 0.53
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTGAAGATACG
Found at i:58304233 original size:19 final size:18
Alignment explanation
Indices: 58304199--58304236 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
58304189 TCTTATCACT
*
58304199 TTTATTATTGTTATTTTA
1 TTTATTATTATTATTTTA
58304217 TTTATTATTTATTATTTTA
1 TTTATTA-TTATTATTTTA
58304236 T
1 T
58304237 ATCTTTTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTATTATTATTATTTTA
Found at i:58304290 original size:3 final size:3
Alignment explanation
Indices: 58304264--58304322 Score: 50
Period size: 3 Copynumber: 20.0 Consensus size: 3
58304254 CAAATTTTAG
* * * * *
58304264 ATT ATT TTT ATT ATT TTT ACT ATT ATT ATC ATT ATT ATC ATT ATT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
58304311 ATGT -TT ATT ATT
1 AT-T ATT ATT ATT
58304323 TTTTGCCTAA
Statistics
Matches: 43, Mismatches: 10, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
2 3 0.07
3 39 0.91
4 1 0.02
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:58304444 original size:6 final size:6
Alignment explanation
Indices: 58304435--58304493 Score: 55
Period size: 6 Copynumber: 9.5 Consensus size: 6
58304425 TTTATTTCAT
* * * * *
58304435 TTTTTA TTTTCA TTTTTTA TTTTCA TTTTTT TATTTTA CTATTA TTTTTA
1 TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA T-TTTTA TTTTTA TTTTTA
58304485 TTTTTA TTT
1 TTTTTA TTT
58304494 CATTTTTACT
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
6 32 0.78
7 9 0.22
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:58304447 original size:13 final size:13
Alignment explanation
Indices: 58304424--58304500 Score: 83
Period size: 13 Copynumber: 6.2 Consensus size: 13
58304414 CTCATTACCA
58304424 TTTTA-TTTCATT
1 TTTTATTTTCATT
58304436 TTTTATTTTCATT
1 TTTTATTTTCATT
58304449 TTTTATTTTCATTT
1 TTTTATTTTCA-TT
*
58304463 TTTTATTTT-A-C
1 TTTTATTTTCATT
* *
58304474 TATTATTTTTA-T
1 TTTTATTTTCATT
58304486 TTTTA-TTTCATT
1 TTTTATTTTCATT
58304498 TTT
1 TTT
58304501 ACTTAATATT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
11 12 0.21
12 14 0.25
13 19 0.34
14 11 0.20
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTATTTTCATT
Found at i:58307306 original size:32 final size:32
Alignment explanation
Indices: 58307256--58307320 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
58307246 ATTGATAATA
*
58307256 AAAAAATTAATTTTTAAAT-TAAAATAAATTTT
1 AAAAAATTAATTTATAAATATAAAAT-AATTTT
* *
58307288 AAAAACTTTATTTATAAATATAAAATAATTTT
1 AAAAAATTAATTTATAAATATAAAATAATTTT
58307320 A
1 A
58307321 GATACAATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 23 0.79
33 6 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (32 bp):
AAAAAATTAATTTATAAATATAAAATAATTTT
Found at i:58311329 original size:18 final size:18
Alignment explanation
Indices: 58311306--58311347 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
58311296 ATTCAGTGTA
*
58311306 ATAAAAGCATGGTTAGTG
1 ATAAAAGCATGGTGAGTG
*
58311324 ATAAAAGCATTGTGAGTG
1 ATAAAAGCATGGTGAGTG
58311342 A-AAAAG
1 ATAAAAG
58311348 TGAAAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 5 0.23
18 17 0.77
ACGTcount: A:0.45, C:0.05, G:0.26, T:0.24
Consensus pattern (18 bp):
ATAAAAGCATGGTGAGTG
Found at i:58317119 original size:26 final size:25
Alignment explanation
Indices: 58317085--58317141 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
58317075 TCTAGGCTCG
* *
58317085 AAGCATGATACAAATACACTGGCACA
1 AAGCCTGATACAAAT-CACCGGCACA
** *
58317111 AAGCCTGATGTAAATCACCGGCACG
1 AAGCCTGATACAAATCACCGGCACA
58317136 AAGCCT
1 AAGCCT
58317142 ACTAGGCATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.39, C:0.26, G:0.19, T:0.16
Consensus pattern (25 bp):
AAGCCTGATACAAATCACCGGCACA
Found at i:58322570 original size:42 final size:42
Alignment explanation
Indices: 58322521--58322656 Score: 247
Period size: 42 Copynumber: 3.2 Consensus size: 42
58322511 TATGGCCCTT
58322521 AAGCCCATTTCAATATCACATGTAATGTCAAT-AGATGTATGC
1 AAGCCCATTTCAATATCACATGTAATGTCAATGA-ATGTATGC
*
58322563 AGGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
1 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
58322605 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
1 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
58322647 AAGCCCATTT
1 AAGCCCATTT
58322657 GGGGAGACTA
Statistics
Matches: 91, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
42 90 0.99
43 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.31
Consensus pattern (42 bp):
AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
Found at i:58322832 original size:25 final size:25
Alignment explanation
Indices: 58322804--58322873 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
58322794 CTCTTTTAAT
58322804 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
58322829 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
58322854 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
58322874 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:58323713 original size:27 final size:27
Alignment explanation
Indices: 58323683--58323747 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
58323673 GGGCATATTC
58323683 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
58323710 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
58323737 GTCTTTTTACC
1 GTCATTTTACC
58323748 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:58323914 original size:27 final size:27
Alignment explanation
Indices: 58323781--58324014 Score: 186
Period size: 27 Copynumber: 8.6 Consensus size: 27
58323771 CATCCTACAA
* * * *
58323781 GGGTGTTTTGGTAAATCTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** *
58323808 GGGTATTTTAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * * *
58323835 TGGTATTTCT-ATAATTTTTAGAAAGTCAA
1 GGGTATTT-TGGTAA-TTTTACAAA-CCAG
** *
58323864 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAACCAG
**
58323891 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
58323917 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* * *
58323945 TGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
58323972 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
58323999 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
58324015 CTATCCTACA
Statistics
Matches: 172, Mismatches: 29, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
26 2 0.01
27 139 0.81
28 16 0.09
29 15 0.09
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:58323982 original size:81 final size:81
Alignment explanation
Indices: 58323865--58324014 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
58323855 GAAAGTCAAG
* ** *
58323865 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGG
1 GGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGG
58323929 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
*
58323946 GGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGG
58324010 TAATT
65 TAATT
58324015 CTATCCTACA
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 1 0.02
81 59 0.95
82 2 0.03
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
AATTTCACAAACCAGT
Found at i:58324028 original size:54 final size:54
Alignment explanation
Indices: 58323864--58324047 Score: 183
Period size: 54 Copynumber: 3.4 Consensus size: 54
58323854 AGAAAGTCAA
* *** * * * *
58323864 GGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCGGTAATTCTACAAACTAG
* *
58323917 AGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCGGTAATTTTACAAACTAG
1 -GGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCGGTAATTCTACAAACTAG
* * * * **
58323972 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTAC-AG
1 GGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCGGTAATTCTA-CAAACTAG
*
58324026 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCGGTAATTTCACAA
58324048 TCGAGGGTAA
Statistics
Matches: 109, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
54 104 0.95
55 5 0.05
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCGGTAATTCTACAAACTAG
Found at i:58324031 original size:81 final size:81
Alignment explanation
Indices: 58323864--58324047 Score: 214
Period size: 81 Copynumber: 2.3 Consensus size: 81
58323854 AGAAAGTCAA
* ** *
58323864 GGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGG
1 GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
58323929 TAATTTCACAAACCAG
66 TAATTTCACAAACCAG
* * *
58323945 TGGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTT
1 GGGTATTTCAGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTC
**
58324008 GGTAA-TTCTATCCTA-CAG
64 GGTAATTTC-A-CAAACCAG
*
58324026 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCAGTAATTTTACAA
58324048 TCGAGGGTAA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
80 4 0.05
81 80 0.91
82 4 0.05
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
TAATTTCACAAACCAG
Found at i:58324054 original size:27 final size:26
Alignment explanation
Indices: 58323885--58324054 Score: 121
Period size: 27 Copynumber: 6.3 Consensus size: 26
58323875 TAATTTTGTA
* *
58323885 AATCAGGGGTATTTTGGTAATTTTAC
1 AATCAGGGGTATTTCGGTAATTTCAC
*
58323911 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 -AATCAG-GGGTATTTCGGTAATTTCAC
* * *
58323938 AAACCAGTGGTATTTCGGTAATTTTAC
1 -AATCAGGGGTATTTCGGTAATTTCAC
* * *
58323965 AAACTAGGGGTATTTTGGTAATTTTAC
1 AATC-AGGGGTATTTCGGTAATTTCAC
* *
58323992 AAACTAGGGGTATTTTGGTAA-TTCTATC
1 AATC-AGGGGTATTTCGGTAATTTC-A-C
* *
58324020 -CTACAGGGGTATTTCAGTAATTTCAC
1 AAT-CAGGGGTATTTCGGTAATTTCAC
58324046 AATCGAGGG
1 AATC-AGGG
58324055 TAAAACGGTA
Statistics
Matches: 118, Mismatches: 16, Indels: 18
0.78 0.11 0.12
Matches are distributed among these distances:
26 8 0.07
27 104 0.88
28 6 0.05
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (26 bp):
AATCAGGGGTATTTCGGTAATTTCAC
Found at i:58324080 original size:27 final size:27
Alignment explanation
Indices: 58324046--58324243 Score: 281
Period size: 27 Copynumber: 7.3 Consensus size: 27
58324036 GTAATTTCAC
*
58324046 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
58324073 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
58324100 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
58324127 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
58324154 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
58324181 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
58324208 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
58324235 AATCGAGGG
1 AATCGAGGG
58324244 CATTTCAGTA
Statistics
Matches: 155, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 153 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:58324162 original size:81 final size:81
Alignment explanation
Indices: 58324046--58324243 Score: 317
Period size: 81 Copynumber: 2.4 Consensus size: 81
58324036 GTAATTTCAC
* * * *
58324046 AATCGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
*
58324110 AAAACGGTAATTCTGTA
65 AAAACGGTAATTCTATA
*
58324127 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
58324192 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
*
58324208 AATCGAGGGTAAAATGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
58324244 CATTTCAGTA
Statistics
Matches: 109, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
81 108 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.28
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:58330291 original size:5 final size:5
Alignment explanation
Indices: 58330281--58330309 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
58330271 AATTTGTGAA
58330281 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
58330310 AACACACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:58332287 original size:65 final size:65
Alignment explanation
Indices: 58332217--58332347 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
58332207 TAACGCCAAA
*
58332217 CTACGTAATTATACCTTATTTAAACATATCAACCGAATGATCAAATACTTAAACTCAACAAAAAT
1 CTACGTAATTATACCTTATTTAAACAAATCAACCGAATGATCAAATACTTAAACTCAACAAAAAT
* *
58332282 CTACGTAATTATACCTTATTTAAACAAATCAACCGAATGATCAAATATTTAAACTTAACAAAAAT
1 CTACGTAATTATACCTTATTTAAACAAATCAACCGAATGATCAAATACTTAAACTCAACAAAAAT
58332347 C
1 C
58332348 ATAATCAAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.47, C:0.19, G:0.05, T:0.30
Consensus pattern (65 bp):
CTACGTAATTATACCTTATTTAAACAAATCAACCGAATGATCAAATACTTAAACTCAACAAAAAT
Found at i:58334249 original size:35 final size:35
Alignment explanation
Indices: 58334178--58334261 Score: 96
Period size: 35 Copynumber: 2.4 Consensus size: 35
58334168 TATGTACATT
* * * **
58334178 TGTGATGATATATTAAACTTGTATTTTTGGCCACA
1 TGTGATGTTATATTAAACTTGAATATTTAACCACA
*
58334213 TGTGATGTTATATTAAACTTGAATATTTAACTACA
1 TGTGATGTTATATTAAACTTGAATATTTAACCACA
* *
58334248 TGTAATGTTTTATT
1 TGTGATGTTATATT
58334262 GAGCTTGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.46
Consensus pattern (35 bp):
TGTGATGTTATATTAAACTTGAATATTTAACCACA
Found at i:58341597 original size:35 final size:35
Alignment explanation
Indices: 58341549--58341711 Score: 164
Period size: 35 Copynumber: 4.6 Consensus size: 35
58341539 GTATGTACAT
58341549 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
58341584 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * * *
58341619 ATGTGATGTTTTATTGATCTTGTATATTCGGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
58341654 ATATGATGATATAGTGTACTTGTTTATTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
*
58341689 ATGTGATGATATAATGAATCTTG
1 ATGTGATGATATATTGAA-CTTG
58341712 AGTATTCGGC
Statistics
Matches: 101, Mismatches: 26, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
35 97 0.96
36 4 0.04
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:58341802 original size:50 final size:50
Alignment explanation
Indices: 58341687--58341803 Score: 128
Period size: 50 Copynumber: 2.3 Consensus size: 50
58341677 TTATTTGGCC
* * *
58341687 ATATGTGATGATATAATGAATCTTGAGTATTCGGCCATACAAGTAAGTAT
1 ATATGTGATGATATATTGAATCTTGAATATTCGGCCAAACAAGTAAGTAT
* * * * * **
58341737 CTATGAGATGATATATTGGATCTTGAATATTCGGCCAAATAGGTGTGTAT
1 ATATGTGATGATATATTGAATCTTGAATATTCGGCCAAACAAGTAAGTAT
58341787 ATATGTGAT-ATTATATT
1 ATATGTGATGA-TATATT
58341804 TGATTTTCTA
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
49 1 0.02
50 53 0.98
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.38
Consensus pattern (50 bp):
ATATGTGATGATATATTGAATCTTGAATATTCGGCCAAACAAGTAAGTAT
Found at i:58348776 original size:49 final size:49
Alignment explanation
Indices: 58348718--58348894 Score: 255
Period size: 49 Copynumber: 3.6 Consensus size: 49
58348708 ATCTGGTATG
*
58348718 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
* * * * * *
58348767 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGTACA
* *
58348818 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGGACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
58348867 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
58348895 CATGACCTCA
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
49 67 0.60
50 6 0.05
51 39 0.35
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
Found at i:58348847 original size:100 final size:100
Alignment explanation
Indices: 58348707--58348895 Score: 324
Period size: 100 Copynumber: 1.9 Consensus size: 100
58348697 TAGACAAAGC
* * * *
58348707 TATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACGTAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGGACACATAG
58348772 TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
66 TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
**
58348807 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGGACACATAG
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGGACACATAG
58348872 TAGCCTGCACTTAGTACTACACAC
66 TAGCCTGCACTTAGTACTACACAC
58348896 ATGACCTCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 83 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGGACACATAG
TAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:58362071 original size:21 final size:21
Alignment explanation
Indices: 58362036--58362100 Score: 58
Period size: 21 Copynumber: 3.1 Consensus size: 21
58362026 TAAAGGCTGT
* * *
58362036 ACAAAAGCACATAAGTGCTAA
1 ACAAAAACCCATAAGGGCTAA
* * *
58362057 ACAGAAACCCATAAGGGTTGA
1 ACAAAAACCCATAAGGGCTAA
* *
58362078 ACAAAAACCCATAGGGGTTAA
1 ACAAAAACCCATAAGGGCTAA
58362099 AC
1 AC
58362101 TGAAGTTCAA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.48, C:0.20, G:0.18, T:0.14
Consensus pattern (21 bp):
ACAAAAACCCATAAGGGCTAA
Found at i:58370213 original size:319 final size:319
Alignment explanation
Indices: 58369634--58370271 Score: 1276
Period size: 319 Copynumber: 2.0 Consensus size: 319
58369624 CCTCGATCCA
58369634 AAAATGACAATTTACCATTTTAGTCCATAACCTTGTATTTTCTCAATTTAAGACCGAATCTCGAT
1 AAAATGACAATTTACCATTTTAGTCCATAACCTTGTATTTTCTCAATTTAAGACCGAATCTCGAT
58369699 TTCCATGATCTATAATATCACATTTAGCCTAATAATTAGTCACACTATTCATATGGGTCTAAAAA
66 TTCCATGATCTATAATATCACATTTAGCCTAATAATTAGTCACACTATTCATATGGGTCTAAAAA
58369764 TCATATTTTTACAAATTTTCATTTTGACCCTTAAACTTTTGCATATTTTCACTTTTGTCCAAAGG
131 TCATATTTTTACAAATTTTCATTTTGACCCTTAAACTTTTGCATATTTTCACTTTTGTCCAAAGG
58369829 CTCAGAAATTAAACTTCATCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTTTACTTCTA
196 CTCAGAAATTAAACTTCATCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTTTACTTCTA
58369894 TGGCAACATCAAATTCTCACTCTAACATGTACTCATGAACATTAGGTATTTTTACCGAT
261 TGGCAACATCAAATTCTCACTCTAACATGTACTCATGAACATTAGGTATTTTTACCGAT
58369953 AAAATGACAATTTACCATTTTAGTCCATAACCTTGTATTTTCTCAATTTAAGACCGAATCTCGAT
1 AAAATGACAATTTACCATTTTAGTCCATAACCTTGTATTTTCTCAATTTAAGACCGAATCTCGAT
58370018 TTCCATGATCTATAATATCACATTTAGCCTAATAATTAGTCACACTATTCATATGGGTCTAAAAA
66 TTCCATGATCTATAATATCACATTTAGCCTAATAATTAGTCACACTATTCATATGGGTCTAAAAA
58370083 TCATATTTTTACAAATTTTCATTTTGACCCTTAAACTTTTGCATATTTTCACTTTTGTCCAAAGG
131 TCATATTTTTACAAATTTTCATTTTGACCCTTAAACTTTTGCATATTTTCACTTTTGTCCAAAGG
58370148 CTCAGAAATTAAACTTCATCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTTTACTTCTA
196 CTCAGAAATTAAACTTCATCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTTTACTTCTA
58370213 TGGCAACATCAAATTCTCACTCTAACATGTACTCATGAACATTAGGTATTTTTACCGAT
261 TGGCAACATCAAATTCTCACTCTAACATGTACTCATGAACATTAGGTATTTTTACCGAT
58370272 TATGCCGTTT
Statistics
Matches: 319, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
319 319 1.00
ACGTcount: A:0.31, C:0.19, G:0.09, T:0.40
Consensus pattern (319 bp):
AAAATGACAATTTACCATTTTAGTCCATAACCTTGTATTTTCTCAATTTAAGACCGAATCTCGAT
TTCCATGATCTATAATATCACATTTAGCCTAATAATTAGTCACACTATTCATATGGGTCTAAAAA
TCATATTTTTACAAATTTTCATTTTGACCCTTAAACTTTTGCATATTTTCACTTTTGTCCAAAGG
CTCAGAAATTAAACTTCATCCTATTTTCTTATGTTTTATGACATGCTGATCATTTTTTACTTCTA
TGGCAACATCAAATTCTCACTCTAACATGTACTCATGAACATTAGGTATTTTTACCGAT
Found at i:58375952 original size:65 final size:65
Alignment explanation
Indices: 58375848--58375978 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
58375838 AGTCCCATGC
58375848 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
58375913 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
58375978 A
1 A
58375979 ACCCTAGGGG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.24
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:58377664 original size:3 final size:3
Alignment explanation
Indices: 58377656--58377689 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
58377646 AAACATACGA
*
58377656 AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT GAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
58377690 CATCCGAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:58377679 original size:17 final size:17
Alignment explanation
Indices: 58377657--58377689 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
58377647 AACATACGAA
58377657 ATAATAATAATAATAAT
1 ATAATAATAATAATAAT
*
58377674 ATAATAATAATGATAA
1 ATAATAATAATAATAA
58377690 CATCCGAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (17 bp):
ATAATAATAATAATAAT
Found at i:58379960 original size:65 final size:65
Alignment explanation
Indices: 58379882--58380012 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
58379872 AGTCCGATGC
58379882 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
* *
58379947 ATCAGATCATAATAACATGGCATGCAGTAAATAGTAATAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
58380012 A
1 A
58380013 ACCCTAGGGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.25
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:58380071 original size:27 final size:26
Alignment explanation
Indices: 58380015--58380071 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
58380005 CAACCTTAAC
* * *
58380015 CCTAGGGGTATATTAGTAATTTTGCT
1 CCTAGGGGTAAATTAGTAATTTTCCA
58380041 CCTAGGGGTAAATCT-GTAAATTTTCCA
1 CCTAGGGGTAAAT-TAGT-AATTTTCCA
58380068 CCTA
1 CCTA
58380072 TAAAGGTAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATTAGTAATTTTCCA
Found at i:58383115 original size:17 final size:18
Alignment explanation
Indices: 58383093--58383128 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
58383083 TCTACTTGTG
*
58383093 TGGGGCTCACAC-GCCCA
1 TGGGGCCCACACGGCCCA
58383110 TGGGGCCCACACGGCCCA
1 TGGGGCCCACACGGCCCA
58383128 T
1 T
58383129 TTCTACCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.17, C:0.42, G:0.31, T:0.11
Consensus pattern (18 bp):
TGGGGCCCACACGGCCCA
Found at i:58385885 original size:21 final size:21
Alignment explanation
Indices: 58385861--58385916 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
58385851 ATAACTGCTA
* * *
58385861 AACAGAAACCCATGAGTGTTG
1 AACAGAAACCCATAAGAGCTG
* *
58385882 AACAGAAGCTCATAAGAGCTG
1 AACAGAAACCCATAAGAGCTG
*
58385903 AACAAAAACCCATA
1 AACAGAAACCCATA
58385917 GGGGTTAAAT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.46, C:0.21, G:0.18, T:0.14
Consensus pattern (21 bp):
AACAGAAACCCATAAGAGCTG
Found at i:58392969 original size:27 final size:27
Alignment explanation
Indices: 58392938--58393115 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
58392928 TAAATTGTAC
58392938 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
58392965 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58392991 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
58393019 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
58393047 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58393074 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
58393101 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58393116 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:58393052 original size:82 final size:81
Alignment explanation
Indices: 58392939--58393094 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
58392929 AAATTGTACA
* *
58392939 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
58393003 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
58393020 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
58393085 TGCGAGTTGA
65 TGCGAATTGA
58393095 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:58393106 original size:82 final size:81
Alignment explanation
Indices: 58392935--58393115 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
58392925 GATTAAATTG
* *
58392935 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
58393000 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
58393016 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
58393080 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
58393098 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
58393116 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:58401072 original size:27 final size:27
Alignment explanation
Indices: 58401041--58401215 Score: 192
Period size: 27 Copynumber: 6.5 Consensus size: 27
58401031 TAAATTGTAC
58401041 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
58401068 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58401094 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
58401122 GGCACTAAGTGTGCGAGTTTGAC-ATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
58401149 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
58401176 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
58401203 AGCACTGAGTGTG
1 AGCACTAAGTGTG
58401216 TGGACTCAAT
Statistics
Matches: 126, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.04
27 116 0.92
28 5 0.04
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:58401154 original size:81 final size:81
Alignment explanation
Indices: 58401042--58401196 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
58401032 AAATTGTACA
* *
58401042 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
58401106 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
58401123 GCACTAAGTGTGCGAGTTTGAC-ATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
58401187 TGCGAGTTGA
65 TGCGAATTGA
58401197 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
81 59 0.89
82 7 0.11
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:58401208 original size:81 final size:81
Alignment explanation
Indices: 58401038--58401215 Score: 216
Period size: 81 Copynumber: 2.2 Consensus size: 81
58401028 GATTAAATTG
* *
58401038 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
58401103 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
58401119 TGCGGCACTAAGTGTGCGAGTTTGAC-ATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
58401182 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
58401200 TATAGCACTGAGTGTG
1 TACAGCACTAAGTGTG
58401216 TGGACTCAAT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 1 0.01
81 74 0.91
82 6 0.07
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:58403521 original size:85 final size:85
Alignment explanation
Indices: 58403378--58404236 Score: 1709
Period size: 85 Copynumber: 10.1 Consensus size: 85
58403368 GGCCGGCCAT
58403378 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
58403443 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
58403463 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
58403528 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
58403548 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
58403613 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
58403633 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
58403698 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
58403718 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
58403783 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
58403803 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
58403868 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
58403888 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
58403953 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
58403973 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
58404038 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
58404058 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
58404123 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
58404143 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
58404208 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
58404228 GGGCATGGG
1 GAGCATGGG
58404237 CAATAAAATA
Statistics
Matches: 773, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 773 1.00
ACGTcount: A:0.39, C:0.08, G:0.26, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:58406467 original size:47 final size:47
Alignment explanation
Indices: 58406416--58406851 Score: 602
Period size: 47 Copynumber: 9.1 Consensus size: 47
58406406 TTAGGATTTT
* * *
58406416 ATGTGATGGATGTAAACATGCGTATGTGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
58406463 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
58406510 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
58406557 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
58406608 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
58406655 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCGTATGTGTGATAAGGCCGAATGGCCA
58406708 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
58406755 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
58406802 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
58406849 ATG
1 ATG
58406852 CGAAACGTGT
Statistics
Matches: 351, Mismatches: 28, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
47 262 0.75
48 1 0.00
49 2 0.01
51 43 0.12
52 1 0.00
53 42 0.12
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:58406612 original size:24 final size:24
Alignment explanation
Indices: 58406584--58406659 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
58406574 CCGTATATAT
58406584 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
58406608 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
58406631 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
58406655 ATGTG
1 ATGTG
58406660 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:58406914 original size:46 final size:46
Alignment explanation
Indices: 58406825--58406915 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
58406815 GAACATGAAT
* * * *
58406825 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
58406871 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
58406916 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:58406930 original size:245 final size:244
Alignment explanation
Indices: 58406438--58406900 Score: 681
Period size: 245 Copynumber: 1.9 Consensus size: 244
58406428 TAAACATGCG
*
58406438 TATGTGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGCGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
* * * * *
58406503 ATGGCCACTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAT
* * *
58406568 GTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTAT
131 GTGAACACGTATATATATGTGTGATAAGGCCGAATGGCCAATGCGA-GAACGTGAACATGCGTAT
* *
58406633 GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATA
195 GTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACCTGTATATATA
*
58406683 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
1 TATGCGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
58406748 ATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAT
* * *
58406813 GTGAACATG-A-ATATATGTG-G-TAAGGCCGAATGGCTAATGCGA-AACGTGTATGAGATG-GA
131 GTGAACACGTATATATATGTGTGATAAGGCCGAATGGCCAATGCGAGAACGTG-A--ACATGCG-
*
58406872 TATGTG-G-TAAAGCCAAATGGCTAATGTGA
192 TATGTGTGATAAAGCCAAATGGCCAATGTGA
58406901 GATATGTACG
Statistics
Matches: 198, Mismatches: 16, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
239 5 0.03
240 20 0.10
241 22 0.11
242 11 0.06
243 9 0.05
244 1 0.01
245 130 0.66
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.26
Consensus pattern (244 bp):
TATGCGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAT
GTGAACACGTATATATATGTGTGATAAGGCCGAATGGCCAATGCGAGAACGTGAACATGCGTATG
TGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACCTGTATATATA
Found at i:58407169 original size:37 final size:37
Alignment explanation
Indices: 58407066--58407174 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
58407056 GGAAATATAT
*
58407066 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
58407103 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * **
58407140 TCCGGGTAAGACCCGATAACTTCACGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
58407175 CGTCTGAGCT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:58409438 original size:17 final size:17
Alignment explanation
Indices: 58409416--58409448 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
58409406 AAGATTTTTT
58409416 AAAGTTCTCACTTTAGA
1 AAAGTTCTCACTTTAGA
*
58409433 AAAGTTCTCAGTTTAG
1 AAAGTTCTCACTTTAG
58409449 TCTCGAACCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (17 bp):
AAAGTTCTCACTTTAGA
Found at i:58413909 original size:40 final size:40
Alignment explanation
Indices: 58413854--58414007 Score: 229
Period size: 40 Copynumber: 3.9 Consensus size: 40
58413844 TTCAGTATGT
*
58413854 TATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* *
58413894 TATATTCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* * *
58413934 TGTATCTGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
* *
58413974 TGTATCCGGGCTAAGCCCCGAAG-GCATTCGTGCT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
58414008 TGGACAAAAT
Statistics
Matches: 103, Mismatches: 11, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 11 0.11
40 92 0.89
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGA
Found at i:58414303 original size:25 final size:25
Alignment explanation
Indices: 58414253--58414303 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
58414243 TGTGTGACAA
* *
58414253 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
58414278 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
58414303 C
1 C
58414304 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:58419256 original size:47 final size:47
Alignment explanation
Indices: 58419202--58419295 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
58419192 AATTTTACTT
58419202 TACTATAGAATTTCATGGACTAAATAACATTTTAAATATACATGACA
1 TACTATAGAATTTCATGGACTAAATAACATTTTAAATATACATGACA
*
58419249 TACTATAGAATTTCATGGACTAAATAGCATTTTAAATATACATGACA
1 TACTATAGAATTTCATGGACTAAATAACATTTTAAATATACATGACA
58419296 CCAAATATGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.34
Consensus pattern (47 bp):
TACTATAGAATTTCATGGACTAAATAACATTTTAAATATACATGACA
Found at i:58429514 original size:15 final size:16
Alignment explanation
Indices: 58429487--58429516 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
58429477 AGATATTCCA
58429487 ATTTAGTCCCATTTTT
1 ATTTAGTCCCATTTTT
58429503 ATTTAG-CCCATTTT
1 ATTTAGTCCCATTTT
58429517 GGCAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (16 bp):
ATTTAGTCCCATTTTT
Found at i:58430152 original size:31 final size:31
Alignment explanation
Indices: 58430117--58430184 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
58430107 TAAGGAAATG
* * *
58430117 AAGAAGAGCGG-GAGTAAGTATAAAGCTTCGT
1 AAGAAGAGCGGTG-GTAAGCATAAAACTTAGT
*
58430148 AAGAANAGCGGTGGTAAGCATAAAACTTAGT
1 AAGAAGAGCGGTGGTAAGCATAAAACTTAGT
58430179 AAGAAG
1 AAGAAG
58430185 CATACAAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.43, C:0.09, G:0.29, T:0.18
Consensus pattern (31 bp):
AAGAAGAGCGGTGGTAAGCATAAAACTTAGT
Found at i:58430549 original size:46 final size:45
Alignment explanation
Indices: 58430456--58430616 Score: 186
Period size: 46 Copynumber: 3.5 Consensus size: 45
58430446 GCCGATTTAT
*
58430456 TGTCCCAGACATGGTCTTACACTGGC-TCATCTCGTAGTTGATGCA
1 TGTCCCAGACATGGTCTTACACTGGCTTCATCTCG-AGTCGATGCA
*
58430501 TGTCCCAGACAT-GTCTTACACTGGCTTGCATCTTGAGGTCGATGCA
1 TGTCCCAGACATGGTCTTACACTGGCTT-CATCTCGA-GTCGATGCA
* * *
58430547 TGTCCCAGACAT-GTCTTACACTAGG-TCTCGTCTCAATGCCGATGCCA
1 TGTCCCAGACATGGTCTTACACT-GGCT-TCATCTCGA-GTCGATG-CA
58430594 TGTCCCAGACATGGTCTTACACT
1 TGTCCCAGACATGGTCTTACACT
58430617 AGCTCACAAT
Statistics
Matches: 102, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
44 13 0.13
45 14 0.14
46 48 0.47
47 17 0.17
48 10 0.10
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (45 bp):
TGTCCCAGACATGGTCTTACACTGGCTTCATCTCGAGTCGATGCA
Found at i:58432802 original size:838 final size:839
Alignment explanation
Indices: 58431336--58433536 Score: 4334
Period size: 838 Copynumber: 2.6 Consensus size: 839
58431326 TAAGTTGCTG
58431336 AAATTTTGAAGCTCAAAACCCCTAAAAATGGCTGAATTTTCGGTGGAGGAGAAATGGTGAAAAAG
1 AAATTTTGAAGCTCAAAACCCCTAAAAATGGCTGAATTTTCGGTGGAGGAGAAATGGTGAAAAAG
58431401 GATGATATCATCTTTCTTTTATTTTTTTTTCATTTTGGTCAAAATAAATCACCAAACTTCACCTA
66 GATGATATCATCTTTCTTTTATTTTTTTTTCATTTTGGTCAAAATAAATCACCAAACTTCACCTA
58431466 ATGCTTGACTATTTTAATTTCTTGCCCCATGGCTGACCATCACCTATTTAATGGCCTAATTTCAG
131 ATGCTTGACTATTTTAATTTCTTGCCCCATGGCTGACCATCACCTATTTAATGGCCTAATTTCAG
58431531 TTTAAAGACCCCTAAATTTGACACCCTTAGATATCAATTTAAGACTTTTGCACTTTATGCGATTT
196 TTTAAAGACCCCTAAATTTGACACCCTTAGATATCAATTTAAGACTTTTGCACTTTATGCGATTT
*
58431596 AGTCCTTTTTCGCAATTGGGCTCACAAATGTCAAAATTAACTTACCAAAATTTTTATGCACTAAT
261 AGTCCTTTTTCGCAATTGGGCTCACAAACGTCAAAATTAACTTACCAAAATTTTTATGCACTAAT
58431661 ATAAACATGTTATGACTCCAAAAATAATTAACAAGATAATTTTCCCGACTTTAGATTTTTGGTCC
326 ATAAACATGTTATGACTCCAAAAATAATTAACAAGATAATTTTCCCGACTTTAGATTTTTGGTCC
58431726 CGAGACCACTATTCTGACTAGCCCTAAAATCGGGCTGTTACATGTTAGCTAAGTTGAAAACAGTT
391 CGAGACCACTATTCTGACTAGCCCTAAAATCGGGCTGTTACATGTTAGCTAAGTTGAAAACAGTT
58431791 GAAGATATTATTAACCGAAGCTCTGGTTCTGAGTTCAGTTTGAATTTATGATTTTTCAGTGATGT
456 GAAGATATTATTAACCGAAGCTCTGGTTCTGAGTTCAGTTTGAATTTATGATTTTTCAGTGATGT
*
58431856 ACTATGAACGGATTGGAATGTGTTTTATTACTAGAATGTAAAGTGATGGTTCATGTTTTCATACG
521 ACTATGAACGGATTGGAATGTGTTTTATTACTAGAATGTAAAGTGATGGTTCATGTTTACATACG
58431921 GCTAATGTCACATTAAAAAGAACTGTTCGACCAGTGATTTAAAGACGGTCACTTTTTTTCTGTAT
586 GCTAATGTCACATTAAAAAGAACTGTTCGACCAGTGATTTAAAGACGGTCACTTTTTTTCTGTAT
58431986 TGAGAATTTGGTGATATCGTTTAATCGAAGAAAAGTCTCACATGTTCCCTGATTTCAAGAATTGA
651 TGAGAATTTGGTGATATCGTTTAATCGAAGAAAAGTCTCACATGTTCCCTGATTTCAAGAATTGA
58432051 AGTATCGAATGTCATAGAAAGATCTGAAGTTAAGATAGTGTTAAAGACTTAAACTATTGAAAGAT
716 AGTATCGAATGTCATAGAAAGATCTGAAGTTAAGATAGTGTTAAAGACTTAAACTATTGAAAGAT
58432116 CGCGAGTAGTTATTATTTGATCTCTGGGAAAGTAGATATAGTTATAGATACTAAATGGA
781 CGCGAGTAGTTATTATTTGATCTCTGGGAAAGTAGATATAGTTATAGATACTAAATGGA
58432175 AAATTTTGAAGCTCAAAACCCCTAAAAATGGCTGAATTTTCGGTGGAGGAGAAATGGTGAAAAAG
1 AAATTTTGAAGCTCAAAACCCCTAAAAATGGCTGAATTTTCGGTGGAGGAGAAATGGTGAAAAAG
58432240 GATGATATCATCTTTCTTTTATTTTTTTTTCATTTTGGTCAAAATAAATCACCAAACTTCACCTA
66 GATGATATCATCTTTCTTTTATTTTTTTTTCATTTTGGTCAAAATAAATCACCAAACTTCACCTA
58432305 ATGCTTGACTATTTTAATTTCTTGCCCCATGGCTGACCATCACCTATTTAATGGCCTAATTTCAG
131 ATGCTTGACTATTTTAATTTCTTGCCCCATGGCTGACCATCACCTATTTAATGGCCTAATTTCAG
58432370 TTTAAAGACCCCTAAATTTGACA-CCTTAGATATCAATTTAAGACTTTTGCACTTTATGCGATTT
196 TTTAAAGACCCCTAAATTTGACACCCTTAGATATCAATTTAAGACTTTTGCACTTTATGCGATTT
58432434 AGTCCTTTTTCGCAATTGGGCTCACAAACGTCAAAATTAACTTACCAAAATTTTTATGCACTAAT
261 AGTCCTTTTTCGCAATTGGGCTCACAAACGTCAAAATTAACTTACCAAAATTTTTATGCACTAAT
58432499 ATAAACATGTTATGACTCCAAAAATAATTAACAAGATAATTTTCCCGACTTTAGATTTTTGGTCC
326 ATAAACATGTTATGACTCCAAAAATAATTAACAAGATAATTTTCCCGACTTTAGATTTTTGGTCC
58432564 CGAGACCACTATTCTGACTAGCCCTAAAATCGGGCTGTTACATGTTAGCTAAGTTGAAAACAGTT
391 CGAGACCACTATTCTGACTAGCCCTAAAATCGGGCTGTTACATGTTAGCTAAGTTGAAAACAGTT
58432629 GAAGATATTATTAACCGAAGCTCTGGTTCTGAGTTCAGTTTGAATTTATGATTTTTCAGTGATGT
456 GAAGATATTATTAACCGAAGCTCTGGTTCTGAGTTCAGTTTGAATTTATGATTTTTCAGTGATGT
58432694 ACTATGAACGGATTGGAATGTGTTTTATTACTAGAATGTAAAGTGATGGTTCATGTTTACATACG
521 ACTATGAACGGATTGGAATGTGTTTTATTACTAGAATGTAAAGTGATGGTTCATGTTTACATACG
*
58432759 GTTAATGTCACATTAAAAAGAACTGTTCGACCAGTGATTTAAAGACGGTCACTTTTTTTCTGTAT
586 GCTAATGTCACATTAAAAAGAACTGTTCGACCAGTGATTTAAAGACGGTCACTTTTTTTCTGTAT
*
58432824 TGAGAATTTGGTGATATCGTTTAATCGAAGAAAAGTGTCACATGTTCCCTGATTTCAAGAATTGA
651 TGAGAATTTGGTGATATCGTTTAATCGAAGAAAAGTCTCACATGTTCCCTGATTTCAAGAATTGA
58432889 AGTATCGAATGTCATAGAAAGATCTGAAGTTAAGATAGTGTTAAAGACTTAAACTATTGAAAGAT
716 AGTATCGAATGTCATAGAAAGATCTGAAGTTAAGATAGTGTTAAAGACTTAAACTATTGAAAGAT
58432954 CGCGAGTAGTTATTATTTGATCTCTGGGAAAGTAGATATAGTTATAGATACTAAATGGA
781 CGCGAGTAGTTATTATTTGATCTCTGGGAAAGTAGATATAGTTATAGATACTAAATGGA
58433013 AAATTTTGAAGCTCAAAACCCCTAAAAATGGCTGAATTTTCGGTGGAGGAGAAATGGTGAAAAAG
1 AAATTTTGAAGCTCAAAACCCCTAAAAATGGCTGAATTTTCGGTGGAGGAGAAATGGTGAAAAAG
58433078 GATGATATCATCTTTCTTTTA-TTTTTTTTCATTTTGGTCAAAATAAATCACCAAACTTCACCTA
66 GATGATATCATCTTTCTTTTATTTTTTTTTCATTTTGGTCAAAATAAATCACCAAACTTCACCTA
**
58433142 ATGCTTGACTATTTTAATTTCTTGCTTCATGGCTGACCATCACCTATTTAATGGCCTAATTTCAG
131 ATGCTTGACTATTTTAATTTCTTGCCCCATGGCTGACCATCACCTATTTAATGGCCTAATTTCAG
58433207 TTTAAAGACCCCTAAATTTGACACCCTTAGATATCAATTTAAGACTTTTGCACTTTATGCGATTT
196 TTTAAAGACCCCTAAATTTGACACCCTTAGATATCAATTTAAGACTTTTGCACTTTATGCGATTT
58433272 AGTCCTTTTTCGCAATTGGGCTCACAAACGTCAAAATTAACTTACCAAAATTTTTATGCACTAAT
261 AGTCCTTTTTCGCAATTGGGCTCACAAACGTCAAAATTAACTTACCAAAATTTTTATGCACTAAT
58433337 ATAAACATGTTATGACTCCAAAAATAATTAACAAGATAATTTTCCCGACTTTAGATTTTTGGTCC
326 ATAAACATGTTATGACTCCAAAAATAATTAACAAGATAATTTTCCCGACTTTAGATTTTTGGTCC
58433402 CGAGACCACTATTCTGACTAGCCCTAAAATCGGGCTGTTACATGTTAGCTAAGTTGAAAACAGTT
391 CGAGACCACTATTCTGACTAGCCCTAAAATCGGGCTGTTACATGTTAGCTAAGTTGAAAACAGTT
58433467 GAAGATATTATTAACCGAAGCTCTGGTTCTGAGTTCAGTTTGAATTTATGATTTTTCAGTGATGT
456 GAAGATATTATTAACCGAAGCTCTGGTTCTGAGTTCAGTTTGAATTTATGATTTTTCAGTGATGT
58433532 ACTAT
521 ACTAT
58433537 NNNNNNNNNN
Statistics
Matches: 1355, Mismatches: 6, Indels: 3
0.99 0.00 0.00
Matches are distributed among these distances:
837 129 0.10
838 1008 0.74
839 218 0.16
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (839 bp):
AAATTTTGAAGCTCAAAACCCCTAAAAATGGCTGAATTTTCGGTGGAGGAGAAATGGTGAAAAAG
GATGATATCATCTTTCTTTTATTTTTTTTTCATTTTGGTCAAAATAAATCACCAAACTTCACCTA
ATGCTTGACTATTTTAATTTCTTGCCCCATGGCTGACCATCACCTATTTAATGGCCTAATTTCAG
TTTAAAGACCCCTAAATTTGACACCCTTAGATATCAATTTAAGACTTTTGCACTTTATGCGATTT
AGTCCTTTTTCGCAATTGGGCTCACAAACGTCAAAATTAACTTACCAAAATTTTTATGCACTAAT
ATAAACATGTTATGACTCCAAAAATAATTAACAAGATAATTTTCCCGACTTTAGATTTTTGGTCC
CGAGACCACTATTCTGACTAGCCCTAAAATCGGGCTGTTACATGTTAGCTAAGTTGAAAACAGTT
GAAGATATTATTAACCGAAGCTCTGGTTCTGAGTTCAGTTTGAATTTATGATTTTTCAGTGATGT
ACTATGAACGGATTGGAATGTGTTTTATTACTAGAATGTAAAGTGATGGTTCATGTTTACATACG
GCTAATGTCACATTAAAAAGAACTGTTCGACCAGTGATTTAAAGACGGTCACTTTTTTTCTGTAT
TGAGAATTTGGTGATATCGTTTAATCGAAGAAAAGTCTCACATGTTCCCTGATTTCAAGAATTGA
AGTATCGAATGTCATAGAAAGATCTGAAGTTAAGATAGTGTTAAAGACTTAAACTATTGAAAGAT
CGCGAGTAGTTATTATTTGATCTCTGGGAAAGTAGATATAGTTATAGATACTAAATGGA
Found at i:58451610 original size:63 final size:63
Alignment explanation
Indices: 58451537--58451660 Score: 248
Period size: 63 Copynumber: 2.0 Consensus size: 63
58451527 AAGTGTATTG
58451537 AAATAATGATTGATGAACTGAATTTTTTTTACTAACGAAGTTTTGCATATTACTCTGGAAATC
1 AAATAATGATTGATGAACTGAATTTTTTTTACTAACGAAGTTTTGCATATTACTCTGGAAATC
58451600 AAATAATGATTGATGAACTGAATTTTTTTTACTAACGAAGTTTTGCATATTACTCTGGAAA
1 AAATAATGATTGATGAACTGAATTTTTTTTACTAACGAAGTTTTGCATATTACTCTGGAAA
58451661 CCTTTAGATA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (63 bp):
AAATAATGATTGATGAACTGAATTTTTTTTACTAACGAAGTTTTGCATATTACTCTGGAAATC
Found at i:58452149 original size:43 final size:44
Alignment explanation
Indices: 58452087--58452173 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 44
58452077 GATCACTGAT
58452087 AGCAGATTTGGCATCTCTGTATT-GACGGGGAACAAATCAAAGA
1 AGCAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCAAAGA
* * * *
58452130 AGCAGATTTGGCGTTTCTGTATTAGACGGGGAGCAGATCAAAGA
1 AGCAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCAAAGA
58452174 TAGTAGATCT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 21 0.54
44 18 0.46
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (44 bp):
AGCAGATTTGGCATCTCTGTATTAGACGGGGAACAAATCAAAGA
Found at i:58452242 original size:90 final size:90
Alignment explanation
Indices: 58452132--58453120 Score: 1485
Period size: 90 Copynumber: 11.0 Consensus size: 90
58452122 ATCAAAGAAG
* * * *
58452132 CAGATTTGGCGTTTCTGTATTAGACGGGGAGCAGATCAAAGATAGTAGATCTGACATTTGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
58452197 TTACATCGAAGCAGATCGAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* *
58452222 CTGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
* *
58452287 TTACATTGAAGCAGATCGAGGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* * * **
58452312 CAGATTTGGCATCTTTGTATTAGACGAGGAGCAGATCGAAGATAGTGGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
58452377 TTACATCGAAGCAGATCGAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* ** ** * *
58452402 CAGAATTGGCGTCTCTGTATTAGATAGGGAGCCTATCAAAGATAGCAGGTCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
*
58452467 TTACATCGAAGCAGATCAAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* *
58452492 TAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGAACTGACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
*
58452557 TTACATCGAAGCAGATCGAGGATGA
66 TTACATCGAAGCAGATCGAAGATGA
** * **
58452582 CAGATTTGGCACCTCTGTATTAGACGAGGAGCAGATCGAAGATAGTGGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
58452647 TTACATCGAAGCAGATCGAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* * *
58452672 TAGATTTGGCGTCTCTATATTAGACGGGGAGTAGATCGAAGATAGCAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
*
58452737 TTACATCGAAGCAGATCAAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* * *
58452762 CAGATTTGGTGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTTTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
* **
58452827 TTACATCGAAGTAGATAAAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* * *
58452852 TAGATTTGGCGTCTCTGTATTAGAAGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
* * *
58452917 TTACATTGAAACAGATCAAAGATGA
66 TTACATCGAAGCAGATCGAAGATGA
* *
58452942 CAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCAGATTTGACATTCGTGTGG
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGT-G
*
58453007 TTTACATCGAAGTAGATCGAAGAT-A
65 TTTACATCGAAGCAGATCGAAGATGA
* *
58453032 GCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGGTAGGAGATCTGACATTCGTGTG
1 -CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGT-
*
58453097 GTGTACATCGAAGCAGATCGAAGA
64 GTTTACATCGAAGCAGATCGAAGA
58453121 AGAGGAAAAA
Statistics
Matches: 810, Mismatches: 87, Indels: 3
0.90 0.10 0.00
Matches are distributed among these distances:
90 707 0.87
91 103 0.13
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (90 bp):
CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGT
TTACATCGAAGCAGATCGAAGATGA
Found at i:58452811 original size:45 final size:45
Alignment explanation
Indices: 58452084--58453082 Score: 222
Period size: 45 Copynumber: 22.2 Consensus size: 45
58452074 GTAGATCACT
** * * *
58452084 GATAGCAGATTTGGCATCTCTGTATT-GACGGGGAACAAATCAAA
1 GATAGCAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAA
* * *
58452128 GA-AGCAGATTTGGCGTTTCTGTATTAGACGGGGAGCAGATCAAA
1 GATAGCAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAA
* * * * * * * *
58452172 GATAGTAGATCTGACATTTGTGTGT-TTACATC--GAAGCAGATCGAA
1 GATAGCAGATTTG--GTGTCTCTGTATTAGA-CGGGGAGCAGATCGAA
* *
58452217 GAT-GACTGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAA
1 GATAG-CAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAA
* * * * * ** * *
58452262 GATAGTAGATCTGACAT-TCGTGTGT-TTACA-TTGAAGCAGATCGAG
1 GATAGCAGATTTG--GTGTC-TCTGTATTAGACGGGGAGCAGATCGAA
** * *
58452307 GAT-GACAGATTTGGCATCTTTGTATTAGACGAGGAGCAGATCGAA
1 GATAG-CAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAA
** * * * * *
58452352 GATAGTGGATCTGACAT-TCGTGTGT-TTACATC--GAAGCAGATCGAA
1 GATAGCAGATTTG--GTGTC-TCTGTATTAGA-CGGGGAGCAGATCGAA
* * ** ** *
58452397 GAT-GACAGAATTGGCGTCTCTGTATTAGATAGGGAGCCTATCAAA
1 GATAG-CAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAA
* * * * * * *
58452442 GATAGCAGGTCTGACAT-TCGTGTGT-TTACATC--GAAGCAGATCAAA
1 GATAGCAGATTTG--GTGTC-TCTGTATTAGA-CGGGGAGCAGATCGAA
* *
58452487 GAT-GATAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAA
1 GATAG-CAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAA
** * * * * *
58452532 GATAGCAGAACTGACAT-TCGTGTGT-TTACATC--GAAGCAGATCGAG
1 GATAGCAGATTTG--GTGTC-TCTGTATTAGA-CGGGGAGCAGATCGAA
*** *
58452577 GAT-GACAGATTTGGCACCTCTGTATTAGACGAGGAGCAGATCGAA
1 GATAG-CAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAA
** * * * * *
58452622 GATAGTGGATCTGACAT-TCGTGTGT-TTACATC--GAAGCAGATCGAA
1 GATAGCAGATTTG--GTGTC-TCTGTATTAGA-CGGGGAGCAGATCGAA
* * * *
58452667 GAT-GATAGATTTGGCGTCTCTATATTAGACGGGGAGTAGATCGAA
1 GATAG-CAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAA
* * * * * *
58452712 GATAGCAGATCTGACAT-TCGTGTGT-TTACATC--GAAGCAGATCAAA
1 GATAGCAGATTTG--GTGTC-TCTGTATTAGA-CGGGGAGCAGATCGAA
*
58452757 GAT-GACAGATTTGGTGTCTCCGTATTAGACGGGGAGCAGATCGAA
1 GATAG-CAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAA
* * * * * * **
58452802 GATAGCAGATCTGACAT-TCGTTTGT-TTACATC--GAAGTAGATAAAA
1 GATAGCAGATTTG--GTGTC-TCTGTATTAGA-CGGGGAGCAGATCGAA
* * *
58452847 GAT-GATAGATTTGGCGTCTCTGTATTAGAAGGGGAGCAGATCGAA
1 GATAG-CAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAA
* * * * ** * * *
58452892 GATAGCAGATCTGACAT-TCATGTGT-TTACA-TTGAAACAGATCAAA
1 GATAGCAGATTTG--GTGTC-TCTGTATTAGACGGGGAGCAGATCGAA
* *
58452937 GAT-GACAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAA
1 GATAG-CAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAA
* * * * *
58452982 GATAGCAGATTTGACAT-TCGTGTGGT-TTACATC--GAAGTAGATCGAA
1 GATAGCAGATTTG--GTGTC-TCT-GTATTAGA-CGGGGAGCAGATCGAA
*
58453028 GATAGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAA
1 GATAGCAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAA
* *
58453073 GGTAGGAGAT
1 GATAGCAGAT
58453083 CTGACATTCG
Statistics
Matches: 666, Mismatches: 194, Indels: 189
0.63 0.18 0.18
Matches are distributed among these distances:
43 65 0.10
44 86 0.13
45 378 0.57
46 86 0.13
47 48 0.07
48 3 0.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (45 bp):
GATAGCAGATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAA
Found at i:58454941 original size:67 final size:70
Alignment explanation
Indices: 58454820--58454957 Score: 228
Period size: 67 Copynumber: 2.0 Consensus size: 70
58454810 AAATTATTCG
*
58454820 TCTTCTATTATTCATAAAGTGTGTTGCATTGAAATAATGATTGATGAACTAAATTTTTTTTACTA
1 TCTTCTATTATTCATAAAG-GTGTT-CATTGAAATAATGATTGATGAACCAAATTTTTTTTACTA
58454885 ACGAAGA
64 ACGAAGA
58454892 TCTTCTATTATTCATAAA-GTG-T-ATTGAAATAATGATTGATGAACCAAATTTTTTTTACTAAC
1 TCTTCTATTATTCATAAAGGTGTTCATTGAAATAATGATTGATGAACCAAATTTTTTTTACTAAC
58454954 GAAG
66 GAAG
58454958 TTTTACATAT
Statistics
Matches: 65, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
67 43 0.66
69 1 0.02
70 3 0.05
72 18 0.28
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (70 bp):
TCTTCTATTATTCATAAAGGTGTTCATTGAAATAATGATTGATGAACCAAATTTTTTTTACTAAC
GAAGA
Found at i:58456175 original size:90 final size:90
Alignment explanation
Indices: 58455451--58456168 Score: 1094
Period size: 90 Copynumber: 8.0 Consensus size: 90
58455441 ATCGAAGAAG
* *
58455451 CAGATTTGGCGTTTCTGTATTAGACGGGGAGCAGATCAAAGATAGTAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
*
58455516 TTACATCGAAGCAGATCGAAGATGA
66 TTACATCGAAGCAGATCAAAGATGA
* * *
58455541 CAGATTTGGTGTCTCCGTATTAGACGTGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
* *
58455606 TTACATCGAAGCAGATCGAGGATGA
66 TTACATCGAAGCAGATCAAAGATGA
* ** * *
58455631 TAGATTTGGCACCTCTGTATTAGACGGGGAGTAGATCAAAGATAGTAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
*
58455696 TCACATCGAAGCAGATCAAAGATGA
66 TTACATCGAAGCAGATCAAAGATGA
* * * * * *
58455721 CAGATTTGGCATTTCTGTATTAGACGAGGAGAAGATCGAAGATAGCAGATCTAACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
58455786 TTACATCGAAGCAGATCAAAGATGA
66 TTACATCGAAGCAGATCAAAGATGA
* * * * * *
58455811 CAGATTTGGCATTTCTGTATTAGACGAGGAGAAGATCGAAGATAGCAGATCTAACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
*
58455876 TTACATCGAAGCAGATCGAAGATGA
66 TTACATCGAAGCAGATCAAAGATGA
* ** ** * *
58455901 TAGATTTGGCGTCTCTGTATTAGATAGGGAGCCTATCGAAGATAGCATATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
58455966 TTACATCGAAGCAGATCAAAGATGA
66 TTACATCGAAGCAGATCAAAGATGA
58455991 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
58456056 TTACATCGAAGCAGATCAAAGATGA
66 TTACATCGAAGCAGATCAAAGATGA
* *
58456081 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATGTGACATTCGTTTGT
1 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
**
58456146 TTACATCGAAATAGATCAAAGAT
66 TTACATCGAAGCAGATCAAAGAT
58456169 AGCAGATCTG
Statistics
Matches: 578, Mismatches: 50, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 578 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (90 bp):
CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
TTACATCGAAGCAGATCAAAGATGA
Found at i:58456208 original size:180 final size:177
Alignment explanation
Indices: 58455451--58456890 Score: 1038
Period size: 180 Copynumber: 8.0 Consensus size: 177
58455441 ATCGAAGAAG
* * * *
58455451 CAGATTTGGCGTTTCTGTATTAGACGGGGAGCAGATCAAAGATAGTAGATCTGACATTCGTGTGT
1 CAGATTTGGC-ATTCTGTATTAGAC--GAAACAGATCGAAGATAGTAGATCTGACATTCGTGTGT
** * *
58455516 TTACATCGAAGCAGATCGAAGATGACAGATTTGGTGTCTCCGTATTAGACGTGGAGCAGATCGAA
63 TTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAA
* * *
58455581 GATAGTAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAGGATGA
128 GATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGA
* * * ** *
58455631 TAGATTTGGCACCTCTGTATTAGACGGGGAGTAGATCAAAGATAGTAGATCTGACATTCGTGTGT
1 CAGATTTGGCA-TTCTGTATTAGAC--GAAACAGATCGAAGATAGTAGATCTGACATTCGTGTGT
* * * * *
58455696 TCACATCGAAGCAGATCAAAGATGACAGATTTGGCATTTCTGTATTAGACGAGGAGAAGATCGAA
63 TTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAA
*
58455761 GATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGA
128 GATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGA
* *
58455811 CAGATTTGGCATTTCTGTATTAGACGAGGAGA-AGATCGAAGATAGCAGATCTAACATTCGTGTG
1 CAGATTTGGCA-TTCTGTATTAGACGA--A-ACAGATCGAAGATAGTAGATCTGACATTCGTGTG
* * ** **
58455875 TTTACATCGAAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATTAGATAGGGAGCCTATCGA
62 TTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGA
*
58455940 AGATAGCATATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGA
127 AGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGA
* * *
58455991 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGT
1 CAGATTTGGCAT-TCTGTATTAGAC--GAAACAGATCGAAGATAGTAGATCTGACATTCGTGTGT
* *
58456056 TTACATCGAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAA
63 TTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAA
* * * **
58456121 GATAGTAGATGTGACATTCGTTTGTTTACATCGAAATAGATCAAAGAT-A
128 GATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGA
* * * * * *
58456170 GCAGATCTGACATTCATGTGTTTACATCGAAACAGATCGAAGAT-G-ACCGAT-TTAGCGTCTC-
1 -CAGATTTGGCATTC-TGT-ATTAGA-CGAAACAGATCGAAGATAGTA--GATCTGA-CAT-TCG
* * * * * * * * * ** *
58456231 TGTATTAGACA-GGGAGCAGATCGAAGAT-AGTAGATCTGACAT-TCGTGTGTT-TACATTGAAG
58 TGTGTT-TACATCGAAGCAGATCGAAGATGA-CAGATTTGGCATCTC-TGTATTAGAC-GGGGAG
* * * * * *
58456292 CAGATCGAGGATGAG-AGATTTGGCA-TC-TTTGTATTAGA-CGAGGAGCAGATCGAAGAT-A
119 CAGATCGAAGAT-AGCAGATCTGACATTCGTGTGT-TTACATCGA--AGCAGATCAAAGATGA
* * * * * * * * *
58456350 GTAGATCTGACATTCGTGTGTTTACATCGAAACAGATCGAAGAT-GATAGATTTGGCGTCTC-TA
1 -CAGATTTGGCATTC-TGT-ATTAGA-CGAAACAGATCGAAGATAG-TAGATCTGACAT-TCGTG
* * * * * * * * *
58456413 T-ATTAGA-CGGGGAGCAGATCGAAGAT-AGCAGATCTGACAT-TCATGTGTTTACATC--GAAA
60 TGTTTACATC--GAAGCAGATCGAAGATGA-CAGATTTGGCATCTC-TGT-ATTAGA-CGGGGAG
* * * * * * * *
58456472 CAGATCGAAGAT-GACCGAT-TTAGCGTCTC-TGTATTAGACA-GGGAGCAGATCGAAGAT-A
119 CAGATCGAAGATAG-CAGATCTGA-CAT-TCGTGTGTT-TACATCGAAGCAGATCAAAGATGA
* * * * * * * * * * *
58456530 GTAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGAT-GACAGATTTGGCGTCTC-TG
1 -CAGATTTGGCATTC-TGT-ATTAGA-CGAAACAGATCGAAGATAG-TAGATCTGACAT-TCGTG
* * * * *
58456593 T-ATTAGA-CGGGGAGCAGATCCAAAGATGATAGATTTGGCATCTCTGTATTAGACGGGGAGCAG
60 TGTTTACATC--GAAGCAGAT-CGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAG
* * * *
58456656 ATCGAAGATAGAAGATCTGACATTCATGTGTTTACATTGAAACAGATCAAAGATGA
122 ATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGA
* * *
58456712 CAGATTTGGCGTCTCTGTATTAGACGAGAAGCAGATCGAAGATAGCAGATTTGACATTCGTGTGG
1 CAGATTTGGCAT-TCTGTATTAGACGA-AA-CAGATCGAAGATAGTAGATCTGACATTCGTGT-G
* *
58456777 TTTACATCGAAGTAGATCGAAGAT-AGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCG
62 TTTACATCGAAGCAGATCGAAGATGA-CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCG
* *
58456841 AAGATAGCAGATCTGACATTCGTGTGGTGTACATCGAAGCAGATCGAAGA
126 AAGATAGCAGATCTGACATTCGTGT-GTTTACATCGAAGCAGATCAAAGA
58456891 AGAGGAAAAA
Statistics
Matches: 1048, Mismatches: 154, Indels: 114
0.80 0.12 0.09
Matches are distributed among these distances:
178 13 0.01
179 24 0.02
180 786 0.75
181 170 0.16
182 49 0.05
183 5 0.00
184 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (177 bp):
CAGATTTGGCATTCTGTATTAGACGAAACAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTA
CATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAT
AGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGA
Found at i:58456212 original size:315 final size:314
Alignment explanation
Indices: 58455843--58456807 Score: 1219
Period size: 315 Copynumber: 3.1 Consensus size: 314
58455833 GACGAGGAGA
58455843 AGATCGAAGATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGATAGATTT
1 AGATCGAAGATAGCAGATCTAACATTC-TGTGTTTACATCGAAGCAGATCGAAGATGATAGATTT
** *
58455908 GGCGTCTCTGTATTAGATAGGGAGCCTATCGAAGATAGCATATCTGACATTCGTGTGTTTACATC
65 GGCGTCTCTGTATTAGATAGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATC
*
58455973 GAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTA
130 GAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTA
*
58456038 GATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTA
195 GATCTGACATTCGTGTGTTTACATCGAAACAGATCAAAGATGACAGATTTGGCGTCTCTGTATTA
* *
58456103 GACGGGGAGCAGATCGAAGATAGTAGATGTGACATTCGTTTGTTTACATCGAAAT
260 GACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTTTGTTTACATCGAAAT
* * * **
58456158 AGATCAAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAACAGATCGAAGATGACCGATTT
1 AGATCGAAGATAGCAGATCTAACATTC-TGTGTTTACATCGAAGCAGATCGAAGATGATAGATTT
* * * *
58456223 AGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATT
65 GGCGTCTCTGTATTAGATAGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATC
* * * * *
58456288 GAAGCAGATCGAGGATGAGAGATTTGGCATCTTTGTATTAGACGAGGAGCAGATCGAAGATAGTA
130 GAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTA
* * *
58456353 GATCTGACATTCGTGTGTTTACATCGAAACAGATCGAAGATGATAGATTTGGCGTCTCTATATTA
195 GATCTGACATTCGTGTGTTTACATCGAAACAGATCAAAGATGACAGATTTGGCGTCTCTGTATTA
* * *
58456418 GACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAAC
260 GACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTTTGTTTACATCGAAAT
* * * * * * * *
58456473 AGATCGAAGAT-GACCGATTTAGCGTCTCTGTATTAGACA-GGGAGCAGATCGAAGAT-AGTAGA
1 AGATCGAAGATAG-CAGATCTAACAT-TCTGTGTT-TACATCGAAGCAGATCGAAGATGA-TAGA
* * * * * * * * * * * *
58456535 TCTGACAT-TCGTGTGTTTACAT-CGAAGCAGATCAAAGAT-GACAGATTTGGCGTCTC-TGT-A
62 TTTGGCGTCTC-TGT-ATTAGATAGGGAGCAGATCGAAGATAG-CAGATCTGACAT-TCGTGTGT
* * *
58456595 TTAGA-CGGGGAGCAGATCCAAAGATGATAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATC
123 TTACATC--GAAGCAGAT-CAAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATC
* * *
58456659 GAAGATAGAAGATCTGACATTCATGTGTTTACATTGAAACAGATCAAAGATGACAGATTTGGCGT
185 GAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAACAGATCAAAGATGACAGATTTGGCGT
* * * * *
58456724 CTCTGTATTAGACGAGAAGCAGATCGAAGATAGCAGATTTGACATTCGTGTGGTTTACATCGAAG
250 CTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGT-TTGTTTACATCGAAA
58456789 T
314 T
58456790 AGATCGAAGATAGCAGAT
1 AGATCGAAGATAGCAGAT
58456808 TTGGCGTCTC
Statistics
Matches: 558, Mismatches: 79, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
314 9 0.02
315 365 0.65
316 156 0.28
317 27 0.05
318 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (314 bp):
AGATCGAAGATAGCAGATCTAACATTCTGTGTTTACATCGAAGCAGATCGAAGATGATAGATTTG
GCGTCTCTGTATTAGATAGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCG
AAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAG
ATCTGACATTCGTGTGTTTACATCGAAACAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAG
ACGGGGAGCAGATCGAAGATAGCAGATCTGACATTCGTTTGTTTACATCGAAAT
Found at i:58456251 original size:270 final size:267
Alignment explanation
Indices: 58455441--58456890 Score: 1111
Period size: 270 Copynumber: 5.4 Consensus size: 267
58455431 CGGGGAACAA
* * *
58455441 ATCGAAGA-AGCAGATTTGGCGTTTCTGTATTAGACGGGGAGCAGATCAAAGATAGTAGATCTGA
1 ATCGAAGATAGCAGATTTGGC-ATTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
* ** * *
58455505 CATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGTGTCTCCGTATTAGACGTGG
65 CATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
* *
58455570 AGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAGGATGATAGA
130 AGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGA
* * ** * * *
58455635 TTTGGCACCTCTGTATTAGA-CGGGGAGTAGATCAAAGATAGTA--GATCTGACATTCGTGTGTT
195 TTTGGCA-TTCTGTATTAGATC--GAAACAGATCGAAGAT-G-ACCGATTTGACATTCGTGTATT
*
58455697 CACATCGAAGCAG
255 GACATCGAAGCAG
* * * *
58455710 ATCAAAGAT-GACAGATTTGGCATTTCTGTATTAGACGAGGAGAAGATCGAAGATAGCAGATCTA
1 ATCGAAGATAG-CAGATTTGGCA-TTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTG
* *
58455774 ACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGCATTTCTGTATTAGACGAG
64 ACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAGACGGG
* * * *
58455839 GAGAAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGATAG
129 GAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAG
* * * * ** * *
58455904 ATTTGGCGTCTCTGTATTAGATAGGGAGCCTATCGAAGAT-AGC-ATATCTGACATTCGTGTGTT
194 ATTTGGCAT-TCTGTATTAGAT-CGAAACAGATCGAAGATGACCGAT-T-TGACATTCGTGTATT
*
58455967 TACATCGAAGCAG
255 GACATCGAAGCAG
* * *
58455980 ATCAAAGAT-GACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTG
1 ATCGAAGATAG-CAGATTTGGCAT-TCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTG
*
58456044 ACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGG
64 ACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAGACGGG
* * ** *
58456109 GAGCAGATCGAAGATAGTAGATGTGACATTCGTTTGTTTACATCGAAATAGATCAAAGAT-AGCA
129 GAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGA-CA
* * * * *
58456173 GATCTGACATTCATGTGTTTACATCGAAACAGATCGAAGATGACCGATTT-AGCGTCTC-TGTAT
193 GATTTGGCATTC-TGT-ATTAGATCGAAACAGATCGAAGATGACCGATTTGA-CAT-TCGTGTAT
* *
58456236 TAGACA-GGGAGCAG
254 T-GACATCGAAGCAG
* * * * * ** * * *
58456250 ATCGAAGATAGTAGATCTGACATTCGTGTGTT-TACATTGAAGCAGATCGAGGATGAG-AGATTT
1 ATCGAAGATAGCAGATTTGGCATTC-TGTATTAGAC-GGGGAGCAGATCGAAGAT-AGCAGATCT
* * * * * * * *
58456313 GGCA-TC-TTTGTATTAGA-CGAGGAGCAGATCGAAGAT-AGTAGATCTGACAT-TCGTGTGTTT
63 GACATTCGTGTGT-TTACATCGA--AGCAGATCAAAGATGA-CAGATTTGGCATCTC-TGT-ATT
* * * * * * * * * *
58456373 ACATC--GAAACAGATCGAAGAT-GATAGATTTGGCGTCTC-TAT-ATTAGA-CGGGGAGCAGAT
122 AGA-CGGGGAGCAGATCGAAGATAG-TAGATCTGACAT-TCGTGTGTTTACATC--GAAGCAGAT
* * * *
58456432 CGAAGAT-AGCAGATCTGACATTCATGTGTTTACATCGAAACAGATCGAAGATGACCGATTT-AG
182 CGAAGATGA-CAGATTTGGCATTC-TGT-ATTAGATCGAAACAGATCGAAGATGACCGATTTGA-
* * *
58456495 CGTCTC-TGTATTAGACA-GGGAGCAG
243 CAT-TCGTGTATT-GACATCGAAGCAG
* * * * * * * *
58456520 ATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATC--GAAGCAGATCAAAGAT-GACAGATT
1 ATCGAAGATAGCAGATTTGGCATTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAG-CAGATC
* * * * * *
58456582 TGGCGTCTC-TGT-ATTAGA-CGGGGAGCAGATCCAAAGATGATAGATTTGGCATCTCTGTATTA
62 TGACAT-TCGTGTGTTTACATC--GAAGCAGAT-CAAAGATGACAGATTTGGCATCTCTGTATTA
* * * * *
58456644 GACGGGGAGCAGATCGAAGATAGAAGATCTGACATTCATGTGTTTACATTGAAACAGATCAAAGA
123 GACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGA
* *
58456709 TGACAGATTTGGCGTCTCTGTATTAGA-CGAGAAGCAGATCGAAGAT-AGCAGATTTGACATTCG
188 TGACAGATTTGGCAT-TCTGTATTAGATCGA-AA-CAGATCGAAGATGA-CCGATTTGACATTCG
* * *
58456772 TGTGGTTTACATCGAAGTAG
249 TGT-ATTGACATCGAAGCAG
*
58456792 ATCGAAGATAGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
1 ATCGAAGATAGCAGATTTGGCAT-TCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
* *
58456857 CATTCGTGTGGTGTACATCGAAGCAGATCGAAGA
65 CATTCGTGT-GTTTACATCGAAGCAGATCAAAGA
58456891 AGAGGAAAAA
Statistics
Matches: 965, Mismatches: 147, Indels: 135
0.77 0.12 0.11
Matches are distributed among these distances:
267 1 0.00
268 11 0.01
269 35 0.04
270 697 0.72
271 124 0.13
272 81 0.08
273 12 0.01
274 3 0.00
275 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (267 bp):
ATCGAAGATAGCAGATTTGGCATTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGAC
ATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGA
GCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGAT
TTGGCATTCTGTATTAGATCGAAACAGATCGAAGATGACCGATTTGACATTCGTGTATTGACATC
GAAGCAG
Found at i:58456574 original size:90 final size:90
Alignment explanation
Indices: 58456158--58456612 Score: 705
Period size: 90 Copynumber: 5.1 Consensus size: 90
58456148 ACATCGAAAT
* * * *
58456158 AGATCAAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAACAGATCGAAGATGACCGATTT
1 AGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAACAGATCGAAGATGACAGATTT
*
58456223 AGCGTCTCTGTATTAGACAGGGAGC
66 GGCGTCTCTGTATTAGACAGGGAGC
* * * *
58456248 AGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATTGAAGCAGATCGAGGATGAGAGATTT
1 AGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAACAGATCGAAGATGACAGATTT
* *
58456313 GGCATCTTTGTATTAGAC-GAGGAGC
66 GGCGTCTCTGTATTAGACAG-GGAGC
*
58456338 AGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAACAGATCGAAGATGATAGATTT
1 AGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAACAGATCGAAGATGACAGATTT
* *
58456403 GGCGTCTCTATATTAGACGGGGAGC
66 GGCGTCTCTGTATTAGACAGGGAGC
* * *
58456428 AGATCGAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAACAGATCGAAGATGACCGATTT
1 AGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAACAGATCGAAGATGACAGATTT
*
58456493 AGCGTCTCTGTATTAGACAGGGAGC
66 GGCGTCTCTGTATTAGACAGGGAGC
* *
58456518 AGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
1 AGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAACAGATCGAAGATGACAGATTT
*
58456583 GGCGTCTCTGTATTAGACGGGGAGC
66 GGCGTCTCTGTATTAGACAGGGAGC
58456608 AGATC
1 AGATC
58456613 CAAAGATGAT
Statistics
Matches: 331, Mismatches: 32, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
89 1 0.00
90 329 0.99
91 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (90 bp):
AGATCGAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAACAGATCGAAGATGACAGATTT
GGCGTCTCTGTATTAGACAGGGAGC
Found at i:58456627 original size:46 final size:45
Alignment explanation
Indices: 58455408--58456845 Score: 422
Period size: 45 Copynumber: 32.0 Consensus size: 45
58455398 TCACTGATAG
* * *
58455408 CAGATTTGGCATCTCTGTATT-GACGGGGAA-CAAATCGAAGAAG-
1 CAGATTTGGCATCTCTGTATTAGAC-GGGAAGCAGATCAAAGATGA
* * *
58455451 CAGATTTGGCGTTTCTGTATTAGACGGGGAGCAGATCAAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGACGGGAAGCAGATCAAAGATGA
* * * * * *
58455495 GTAGATCTGACAT-TCGTGTGTTTACATC--GAAGCAGATCGAAGATGA
1 -CAGATTTGGCATCTC-TGT-ATTAGA-CGGGAAGCAGATCAAAGATGA
** * *
58455541 CAGATTTGGTGTCTCCGTATTAGACGTGG-AGCAGATCGAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGACG-GGAAGCAGATCAAAGATGA
* * * * * * *
58455585 GTAGATCTGACAT-TCGTGTGTTTACATC--GAAGCAGATCGAGGATGA
1 -CAGATTTGGCATCTC-TGT-ATTAGA-CGGGAAGCAGATCAAAGATGA
* * * *
58455631 TAGATTTGGCACCTCTGTATTAGACGGGGAGTAGATCAAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGACGGGAAGCAGATCAAAGATGA
* * * * *
58455675 GTAGATCTGACAT-TCGTGTGTTCACATC--GAAGCAGATCAAAGATGA
1 -CAGATTTGGCATCTC-TGTATT-AGA-CGGGAAGCAGATCAAAGATGA
* * *
58455721 CAGATTTGGCATTTCTGTATTAGACGAGG-AGAAGATCGAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGACG-GGAAGCAGATCAAAGATGA
* ** * *
58455765 GCAGATCTAACAT-TCGTGTGTTTACATC--GAAGCAGATCAAAGATGA
1 -CAGATTTGGCATCTC-TGT-ATTAGA-CGGGAAGCAGATCAAAGATGA
* * *
58455811 CAGATTTGGCATTTCTGTATTAGACGAGG-AGAAGATCGAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGACG-GGAAGCAGATCAAAGATGA
* ** * * *
58455855 GCAGATCTAACAT-TCGTGTGTTTACATC--GAAGCAGATCGAAGATGA
1 -CAGATTTGGCATCTC-TGT-ATTAGA-CGGGAAGCAGATCAAAGATGA
* * * ** *
58455901 TAGATTTGGCGTCTCTGTATTAGATAGGG-AGCCTATCGAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGA-CGGGAAGCAGATCAAAGATGA
* * * * *
58455945 GCATATCTGACAT-TCGTGTGTTTACATC--GAAGCAGATCAAAGATGA
1 -CAGATTTGGCATCTC-TGT-ATTAGA-CGGGAAGCAGATCAAAGATGA
* * *
58455991 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGACGGGAAGCAGATCAAAGATGA
* * * * *
58456035 GTAGATCTGACAT-TCGTGTGTTTACATC--GAAGCAGATCAAAGATGA
1 -CAGATTTGGCATCTC-TGT-ATTAGA-CGGGAAGCAGATCAAAGATGA
* * *
58456081 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGACGGGAAGCAGATCAAAGATGA
* * * * * **
58456125 GTAGATGTGACATTCGTTTGT-TTACATC--GAAATAGATCAAAGAT-A
1 -CAGATTTGGCA-TC-TCTGTATTAGA-CGGGAAGCAGATCAAAGATGA
* * * * * *
58456170 GCAGATCTGACAT-TCATGTGTTTACATC--GAAACAGATCGAAGATGA
1 -CAGATTTGGCATCTC-TGT-ATTAGA-CGGGAAGCAGATCAAAGATGA
* * * *
58456216 CCGATTTAGCGTCTCTGTATTAGACAGGG-AGCAGATCGAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGAC-GGGAAGCAGATCAAAGATGA
* * * * * ** * *
58456260 GTAGATCTGACAT-TCGTGTGTT-TACATTGAAGCAGATCGAGGATGA
1 -CAGATTTGGCATCTC-TGTATTAGAC-GGGAAGCAGATCAAAGATGA
* * *
58456306 GAGATTTGGCATCTTTGTATTAGACGAGG-AGCAGATCGAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGACG-GGAAGCAGATCAAAGATGA
* * * * * * *
58456350 GTAGATCTGACAT-TCGTGTGTTTACATC--GAAACAGATCGAAGATGA
1 -CAGATTTGGCATCTC-TGT-ATTAGA-CGGGAAGCAGATCAAAGATGA
* * * * *
58456396 TAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCGAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGACGGGAAGCAGATCAAAGATGA
* * * * * *
58456440 GCAGATCTGACAT-TCATGTGTTTACATC--GAAACAGATCGAAGATGA
1 -CAGATTTGGCATCTC-TGT-ATTAGA-CGGGAAGCAGATCAAAGATGA
* * * *
58456486 CCGATTTAGCGTCTCTGTATTAGACAGGG-AGCAGATCGAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGAC-GGGAAGCAGATCAAAGATGA
* * * * *
58456530 GTAGATCTGACAT-TCGTGTGTTTACATC--GAAGCAGATCAAAGATGA
1 -CAGATTTGGCATCTC-TGT-ATTAGA-CGGGAAGCAGATCAAAGATGA
* *
58456576 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCCAAAGATGA
1 CAGATTTGGCATCTCTGTATTAGACGGGAAGCAGAT-CAAAGATGA
* * *
58456622 TAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGA
1 CAGATTTGGCATCTCTGTATTAGACGGGAAGCAGATCAAAGAT-GA
* * * * ** *
58456668 -AGATCTGACAT-TCATGTGTT-TACATTGAAACAGATCAAAGATGA
1 CAGATTTGGCATCTC-TGTATTAGAC-GGGAAGCAGATCAAAGATGA
* * *
58456712 CAGATTTGGCGTCTCTGTATTAGACGAGAAGCAGATCGAAGAT-A
1 CAGATTTGGCATCTCTGTATTAGACGGGAAGCAGATCAAAGATGA
* * * * *
58456756 GCAGATTTGACAT-TCGTGTGGTTTACATC--GAAGTAGATCGAAGAT-A
1 -CAGATTTGGCATCTC-TGT--ATTAGA-CGGGAAGCAGATCAAAGATGA
* * *
58456802 GCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGAT
1 -CAGATTTGGCATCTCTGTATTAGACGGGAAGCAGATCAAAGAT
58456846 AGCAGATCTG
Statistics
Matches: 1027, Mismatches: 242, Indels: 250
0.68 0.16 0.16
Matches are distributed among these distances:
42 1 0.00
43 37 0.04
44 111 0.11
45 689 0.67
46 168 0.16
47 20 0.02
48 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.27
Consensus pattern (45 bp):
CAGATTTGGCATCTCTGTATTAGACGGGAAGCAGATCAAAGATGA
Found at i:58456663 original size:226 final size:227
Alignment explanation
Indices: 58456389--58456839 Score: 755
Period size: 226 Copynumber: 2.0 Consensus size: 227
58456379 AAACAGATCG
* *
58456389 AAGATGATAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACATT
1 AAGATGATAGATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGATAGAAGATCTGACATT
* * *
58456454 CATGTGTTTACATCGAAACAGATCGAAGATGACCGATTTAGCGTCTCTGTATTAGAC-AGGGAGC
66 CATGTGTTTACATCGAAACAGATCAAAGATGACAGATTTAGCGTCTCTGTATTAGACGA-GAAGC
*
58456518 AGATCGAAGATAGTAGATCTGACATTCGTGT-GTTTACATCGAAGCAGATCAAAGAT-GACAGAT
130 AGATCGAAGATAGCAGATCTGACATTCGTGTGGTTTACATCGAAGCAGATCAAAGATAG-CAGAT
58456581 TTGGCGTCTCTGTATTAGACGGGGAGCAGATCCA
194 TTGGCGTCTCTGTATTAGACGGGGAGCAGATCCA
*
58456615 AAGATGATAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGAAGATCTGACATT
1 AAGATGATAGATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGATAGAAGATCTGACATT
* *
58456680 CATGTGTTTACATTGAAACAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGAGAAGCA
66 CATGTGTTTACATCGAAACAGATCAAAGATGACAGATTTAGCGTCTCTGTATTAGACGAGAAGCA
* * *
58456745 GATCGAAGATAGCAGATTTGACATTCGTGTGGTTTACATCGAAGTAGATCGAAGATAGCAGATTT
131 GATCGAAGATAGCAGATCTGACATTCGTGTGGTTTACATCGAAGCAGATCAAAGATAGCAGATTT
58456810 GGCGTCTCTGTATTAGACGGGGAGCAGATC
196 GGCGTCTCTGTATTAGACGGGGAGCAGATC
58456840 GAAGATAGCA
Statistics
Matches: 210, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
226 148 0.70
227 61 0.29
228 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (227 bp):
AAGATGATAGATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGATAGAAGATCTGACATT
CATGTGTTTACATCGAAACAGATCAAAGATGACAGATTTAGCGTCTCTGTATTAGACGAGAAGCA
GATCGAAGATAGCAGATCTGACATTCGTGTGGTTTACATCGAAGCAGATCAAAGATAGCAGATTT
GGCGTCTCTGTATTAGACGGGGAGCAGATCCA
Found at i:58456703 original size:91 final size:91
Alignment explanation
Indices: 58456605--58456890 Score: 423
Period size: 91 Copynumber: 3.1 Consensus size: 91
58456595 TTAGACGGGG
* * *
58456605 AGCAGATCCAAAGATGATAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGAAG
1 AGCAGAT-CAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAG
* *
58456670 ATCTGACATTCATGT-GTTTACATTGA
65 ATCTGACATTCGTGTGGTTTACATCGA
* * *
58456696 AACAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGAGAAGCAGATCGAAGATAGCAGA
1 AGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGA
*
58456761 TTTGACATTCGTGTGGTTTACATCGA
66 TCTGACATTCGTGTGGTTTACATCGA
* *
58456787 AGTAGATCGAAGAT-AGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAG
1 AGCAGATCAAAGATGA-CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAG
*
58456851 ATCTGACATTCGTGTGGTGTACATCGA
65 ATCTGACATTCGTGTGGTTTACATCGA
*
58456878 AGCAGATCGAAGA
1 AGCAGATCAAAGA
58456891 AGAGGAAAAA
Statistics
Matches: 176, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
90 66 0.38
91 110 0.62
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (91 bp):
AGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGA
TCTGACATTCGTGTGGTTTACATCGA
Found at i:58456852 original size:136 final size:134
Alignment explanation
Indices: 58455466--58456852 Score: 524
Period size: 135 Copynumber: 10.3 Consensus size: 134
58455456 TTGGCGTTTC
* * * * * * *
58455466 TGTATTAGACGGGGAGCAGATCAAAGATAGTAGATCTGACAT-TCGTGTGTT-TAC-ATCGAAGC
1 TGTATTAGACGGGAAGCAGATCGAAGATAGCAGATTTGGCATCTC-TGTATTAGACGA--GAAGC
*** * * * *
58455528 AGATCGAAGATGACAGATTTGGTGTCTCCGT-ATTAGACGTGGAGCAGATCGAAGATAGTAGATC
63 AGATCGAAGATGACAGATTTGACATCTCTGTGTTTACAC--GAAGCAGATCGAAGATAGTAGATC
*
58455592 TGACATTCG
126 TGACATTCA
* * * * * * * *
58455601 TGTGTTTACATC--GAAGCAGATCGAGGAT-GATAGATTTGGCACCTCTGTATTAGACGGGGAGT
1 TGT-ATTAGA-CGGGAAGCAGATCGAAGATAG-CAGATTTGGCATCTCTGTATTAGACGAGAAGC
* * * * * *
58455663 AGATCAAAGAT-AGTAGATCTGACAT-TCGTGTGTTCACATCGAAGCAGATCAAAGAT-GACAGA
63 AGATCGAAGATGA-CAGATTTGACATCTC-TGTGTTTACA-CGAAGCAGATCGAAGATAG-TAGA
* *
58455725 TTTGGCATTTC-
124 TCTGACA-TTCA
* * ** * *
58455736 TGTATTAGACGAGG-AGAAGATCGAAGATAGCAGATCTAACAT-TCGTGTGTT-TAC-ATCGAAG
1 TGTATTAGACG-GGAAGCAGATCGAAGATAGCAGATTTGGCATCTC-TGTATTAGACGA--GAAG
* * * * * * *
58455797 CAGATCAAAGATGACAGATTTGGCATTTCTGT-ATTAGACGAGGAGAAGATCGAAGATAGCAGAT
62 CAGATCGAAGATGACAGATTTGACATCTCTGTGTTTACACGA--AGCAGATCGAAGATAGTAGAT
* *
58455861 CTAACATTCG
125 CTGACATTCA
* * * * * *
58455871 TGTGTTTACATC--GAAGCAGATCGAAGAT-GATAGATTTGGCGTCTCTGTATTAGA-TAGGGAG
1 TGT-ATTAGA-CGGGAAGCAGATCGAAGATAG-CAGATTTGGCATCTCTGTATTAGACGA-GAAG
** * * * *
58455932 CCTATCGAAGAT-AGCATATCTGACAT-TCGTGTGTTTACATCGAAGCAGATCAAAGAT-GACAG
62 CAGATCGAAGATGA-CAGATTTGACATCTC-TGTGTTTACA-CGAAGCAGATCGAAGATAG-TAG
* * *
58455994 ATTTGGCGTCTC-
123 ATCTGACAT-TCA
* * * * * *
58456006 TGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACAT-TCGTGTGTT-TAC-ATCGAAGC
1 TGTATTAGACGGGAAGCAGATCGAAGATAGCAGATTTGGCATCTC-TGTATTAGACGA--GAAGC
* * * * * * *
58456068 AGATCAAAGATGACAGATTTGGCGTCTCTGT-ATTAGACGGGGAGCAGATCGAAGATAGTAGATG
63 AGATCGAAGATGACAGATTTGACATCTCTGTGTTTACAC--GAAGCAGATCGAAGATAGTAGATC
*
58456132 TGACATTCGTT
126 TGACATTC--A
* ** * * * * *
58456143 TGT-TTACATC--GAAATAGATCAAAGATAGCAGATCTGACAT-TCATGTGTTTACATCGA-AA-
1 TGTATTAGA-CGGGAAGCAGATCGAAGATAGCAGATTTGGCATCTC-TGT-ATTAGA-CGAGAAG
* * * * * *
58456202 CAGATCGAAGATGACCGATTT-AGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGTAGAT
62 CAGATCGAAGATGACAGATTTGA-CATCTCTGTGTT-TACACGAAGCAGATCGAAGATAGTAGAT
*
58456266 CTGACATTCG
125 CTGACATTCA
* * ** * * *
58456276 TGTGTT-TACATTGAAGCAGATCGAGGATGAG-AGATTTGGCATCTTTGTATTAGACGAGGAGCA
1 TGTATTAGAC-GGGAAGCAGATCGAAGAT-AGCAGATTTGGCATCTCTGTATTAGACGAGAAGCA
* * *
58456339 GATCGAAGAT-AGTAGATCTGACAT-TCGTGTGTTTACATCGAAACAGATCGAAGAT-GATAGAT
64 GATCGAAGATGA-CAGATTTGACATCTC-TGTGTTTACA-CGAAGCAGATCGAAGATAG-TAGAT
* * *
58456401 TTGGCGTCTC-
125 CTGACAT-TCA
* * * * * *
58456411 TATATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGACAT-TCATGTGTTTACATCGA-AA-C
1 TGTATTAGACGGGAAGCAGATCGAAGATAGCAGATTTGGCATCTC-TGT-ATTAGA-CGAGAAGC
* * * * * *
58456473 AGATCGAAGATGACCGATTT-AGCGTCTCTGTATTAGACAGGGAGCAGATCGAAGATAGTAGATC
63 AGATCGAAGATGACAGATTTGA-CATCTCTGTGTT-TACACGAAGCAGATCGAAGATAGTAGATC
*
58456537 TGACATTCG
126 TGACATTCA
* * * * * *
58456546 TGTGTTTACATC--GAAGCAGATCAAAGAT-GACAGATTTGGCGTCTCTGTATTAGACGGGGAGC
1 TGT-ATTAGA-CGGGAAGCAGATCGAAGATAG-CAGATTTGGCATCTCTGTATTAGACGAGAAGC
* * * * * * *
58456608 AGATCCAAAGATGATAGATTTGGCATCTCTGT-ATTAGACGGGGAGCAGATCGAAGATAGAAGAT
63 AGAT-CGAAGATGACAGATTTGACATCTCTGTGTTTACAC--GAAGCAGATCGAAGATAGTAGAT
58456672 CTGACATTCA
125 CTGACATTCA
* * ** * * *
58456682 TGTGTT-TACATTGAAACAGATCAAAGAT-GACAGATTTGGCGTCTCTGTATTAGACGAGAAGCA
1 TGTATTAGAC-GGGAAGCAGATCGAAGATAG-CAGATTTGGCATCTCTGTATTAGACGAGAAGCA
* *
58456745 GATCGAAGAT-AGCAGATTTGACAT-TCGTGTGGTTTACATCGAAGTAGATCGAAGATAGCAGAT
64 GATCGAAGATGA-CAGATTTGACATCTC-TGT-GTTTACA-CGAAGCAGATCGAAGATAGTAGAT
* * *
58456808 TTGGCGTCTC-
125 CTGACAT-TCA
*
58456818 TGTATTAGACGGGGAGCAGATCGAAGATAGCAGAT
1 TGTATTAGACGGGAAGCAGATCGAAGATAGCAGAT
58456853 CTGACATTCG
Statistics
Matches: 930, Mismatches: 216, Indels: 211
0.69 0.16 0.16
Matches are distributed among these distances:
132 1 0.00
133 16 0.02
134 71 0.08
135 586 0.63
136 227 0.24
137 26 0.03
138 2 0.00
139 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.27
Consensus pattern (134 bp):
TGTATTAGACGGGAAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTATTAGACGAGAAGCAGA
TCGAAGATGACAGATTTGACATCTCTGTGTTTACACGAAGCAGATCGAAGATAGTAGATCTGACA
TTCA
Found at i:58458229 original size:53 final size:52
Alignment explanation
Indices: 58458154--58458256 Score: 143
Period size: 53 Copynumber: 2.0 Consensus size: 52
58458144 AGTTACTTTG
* * *
58458154 TCTAAAGAGAAGGGAAGCCAAGGTGAAAACCTACAAAGGGCGCTTTGAGAGT
1 TCTAAAGAAAAGGGAAGCCAAGGTGAAAACCCACAAAGGGCGCCTTGAGAGT
* * *
58458206 TCTAAAGAAAATGGAGAGGCAAGGTGAAAACCCGCAAAGGGCGCCTTGAGA
1 TCTAAAGAAAAGGGA-AGCCAAGGTGAAAACCCACAAAGGGCGCCTTGAGA
58458257 CCAAAGGGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
52 13 0.30
53 31 0.70
ACGTcount: A:0.39, C:0.17, G:0.31, T:0.14
Consensus pattern (52 bp):
TCTAAAGAAAAGGGAAGCCAAGGTGAAAACCCACAAAGGGCGCCTTGAGAGT
Found at i:58459105 original size:74 final size:74
Alignment explanation
Indices: 58459014--58459159 Score: 274
Period size: 74 Copynumber: 2.0 Consensus size: 74
58459004 GGAGCACTTG
**
58459014 ACTCATTTTGATCATGGCATCCTAATCATTAGGCATGAGTACATACGCATTCTACAGGTTATGTC
1 ACTCATTTCAATCATGGCATCCTAATCATTAGGCATGAGTACATACGCATTCTACAGGTTATGTC
58459079 CTTTAGGCT
66 CTTTAGGCT
58459088 ACTCATTTCAATCATGGCATCCTAATCATTAGGCATGAGTACATACGCATTCTACAGGTTATGTC
1 ACTCATTTCAATCATGGCATCCTAATCATTAGGCATGAGTACATACGCATTCTACAGGTTATGTC
58459153 CTTTAGG
66 CTTTAGG
58459160 GGACAATGTA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 70 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (74 bp):
ACTCATTTCAATCATGGCATCCTAATCATTAGGCATGAGTACATACGCATTCTACAGGTTATGTC
CTTTAGGCT
Found at i:58459332 original size:90 final size:90
Alignment explanation
Indices: 58459229--58459749 Score: 837
Period size: 90 Copynumber: 5.8 Consensus size: 90
58459219 AAGAAGTAGG
* * * *
58459229 TTTGGCGTTTCTGTATTAGACGGGGAGTAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTAC
1 TTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTAC
*
58459294 ATCGAAGCAGATCGAAGATGACCGA
66 ATCGAAGCAGATCGAAGATGACAGA
*
58459319 TTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGAGCTGACATTCGTGTGTTTAC
1 TTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTAC
*
58459384 ATCGAAGTAGATCG-AGCATGACAGA
66 ATCGAAGCAGATCGAAG-ATGACAGA
* *
58459409 TTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGTAGATCTGACATTCGTGTGTTTAC
1 TTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTAC
*
58459474 ATCGAAGCAGATCAAAGATGACAGA
66 ATCGAAGCAGATCGAAGATGACAGA
* * * * * *
58459499 TTTGGCATTTCTGTATTAGACGAGGAGAAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTAC
1 TTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTAC
58459564 ATCGAAGCAGATCGAAGATGACAGA
66 ATCGAAGCAGATCGAAGATGACAGA
* * *
58459589 TTTGGCGTCTCTGTATTAGATGGGGAGCATATCGAAGATAGAAGATCTGACATTCGTGTGTTTAC
1 TTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTAC
*
58459654 ATCGAAGCAGATCAAAGATGACAGA
66 ATCGAAGCAGATCGAAGATGACAGA
*
58459679 TTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATGTGACATTCGTGTGTTTAC
1 TTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTAC
58459744 ATCGAA
66 ATCGAA
58459750 ATAGATCAAA
Statistics
Matches: 397, Mismatches: 32, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
89 2 0.01
90 393 0.99
91 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (90 bp):
TTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTAC
ATCGAAGCAGATCGAAGATGACAGA
Found at i:58459869 original size:90 final size:90
Alignment explanation
Indices: 58459752--58460664 Score: 1333
Period size: 90 Copynumber: 10.1 Consensus size: 90
58459742 ACATCGAAAT
* *
58459752 AGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACCGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
*
58459817 GGCATCTCTGTATTAGACGGGGAGC
66 GGCGTCTCTGTATTAGACGGGGAGC
* * * * * *
58459842 ATATCGAAGATAGTAGATCTGACATTCGTGTGTTTAAATTGAAGCAGATCGAGGATGACAGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
*
58459907 GGCGTCTTTGTATTAGACGGGGAGC
66 GGCGTCTCTGTATTAGACGGGGAGC
* * * * *
58459932 AGATCGAAGATAGTAGATCTGACATTCGTGTGTTTAAATTGAAGCAGATCGAGGATGACAGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
*
58459997 GGCGTCTTTGTATTAGACGGGGAGC
66 GGCGTCTCTGTATTAGACGGGGAGC
* * * * *
58460022 AGATCGAAGATAGTAGATCTGACATTCGTGTGTGTACATTGAAGCAGATCGAAGATGATAGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
*
58460087 GGCGTCTCTGTATTAGACGAGGAGC
66 GGCGTCTCTGTATTAGACGGGGAGC
* * *
58460112 AGATCGAAGATAGCAGATCGGACATTCATGTGTTTACATCGAAGCAGATCGAAGATGACAGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
* * *
58460177 GGTGCCTCCGTATTAGACGGGGAGC
66 GGCGTCTCTGTATTAGACGGGGAGC
* * *
58460202 AGATCGAAGATAGCAGATCTGACATTCGTTTGTTTACATCGAAGCAGAGCAAAGATGATAGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
58460267 GGCGTCTCTGTATTAGACGGGGAGC
66 GGCGTCTCTGTATTAGACGGGGAGC
* * * *
58460292 AAATCGAAGATAGCAGATCTGACATTCGTTTGTTTACATCGAAGCAGAGCAAAGATGATAGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
58460357 GGCGTCTCTGTATTAGACGGGGAGC
66 GGCGTCTCTGTATTAGACGGGGAGC
* * *
58460382 AAATCGAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAACAGATCAAAGATGACAGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
* *
58460447 GGCGTCTCTGTATTAGACGGAGAGT
66 GGCGTCTCTGTATTAGACGGGGAGC
* * ** **
58460472 AGATCAAAGATAGCAGATTTGACATTTATGTGTTTACATCGAAATAGATCAAAGATGACAGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
58460537 GGCGTCTCTGTATTAGACGGGGAGC
66 GGCGTCTCTGTATTAGACGGGGAGC
* *
58460562 AGATCGAAGATAGCAGATCTGACATTCGTGTGGTGTACATCGAAGCAGATCGAAGAT-AGCAGAT
1 AGATCGAAGATAGCAGATCTGACATTCGTGT-GTTTACATCGAAGCAGATCAAAGATGA-CAGAT
* * *
58460626 TTGGCGTCTCTGTATTTGATGAGGAGC
64 TTGGCGTCTCTGTATTAGACGGGGAGC
*
58460653 AGATCAAAGATA
1 AGATCGAAGATA
58460665 TTAACAAGGC
Statistics
Matches: 758, Mismatches: 63, Indels: 3
0.92 0.08 0.00
Matches are distributed among these distances:
90 697 0.92
91 61 0.08
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (90 bp):
AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
GGCGTCTCTGTATTAGACGGGGAGC
Found at i:58459876 original size:315 final size:315
Alignment explanation
Indices: 58459437--58460060 Score: 1050
Period size: 315 Copynumber: 2.0 Consensus size: 315
58459427 GACGGGGAGC
*
58459437 AGATCAAAGATAGTAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
1 AGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
* *
58459502 GGCATTTCTGTATTAGACGAGGAGAAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTACATC
66 GGCATCTCTGTATTAGACGAGGAGAAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTAAATC
* *
58459567 GAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGATGGGGAGCATATCGAAGATAGAA
131 GAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGAA
*
58459632 GATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTA
196 GATCTGACATTCGTGTGTTTAAATCGAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTA
* *
58459697 GACGGGGAGCAGATCGAAGATAGTAGATGTGACATTCGTGTGTTTACATCGAAAT
261 GACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTGTACATCGAAAT
*
58459752 AGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACCGATTT
1 AGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
* * * * * *
58459817 GGCATCTCTGTATTAGACGGGGAGCATATCGAAGATAGTAGATCTGACATTCGTGTGTTTAAATT
66 GGCATCTCTGTATTAGACGAGGAGAAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTAAATC
* * *
58459882 GAAGCAGATCGAGGATGACAGATTTGGCGTCTTTGTATTAGACGGGGAGCAGATCGAAGATAGTA
131 GAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGAA
* * * *
58459947 GATCTGACATTCGTGTGTTTAAATTGAAGCAGATCGAGGATGACAGATTTGGCGTCTTTGTATTA
196 GATCTGACATTCGTGTGTTTAAATCGAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTA
58460012 GACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTGTACAT
261 GACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTGTACAT
58460061 TGAAGCAGAT
Statistics
Matches: 287, Mismatches: 22, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
315 287 1.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (315 bp):
AGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTT
GGCATCTCTGTATTAGACGAGGAGAAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTAAATC
GAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGAA
GATCTGACATTCGTGTGTTTAAATCGAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTA
GACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTGTACATCGAAAT
Found at i:58460043 original size:405 final size:405
Alignment explanation
Indices: 58459347--58460154 Score: 1289
Period size: 405 Copynumber: 2.0 Consensus size: 405
58459337 GACGGGGAGC
* * * *
58459347 AGATCGAAGATAGTAGAGCTGACATTCGTGTGTTTACATCGAAGTAGATCGAGCATGACAGATTT
1 AGATCAAAGATAGCAGAGCTGACATTCGTGTGTTTACATCGAAGCAGATCAAGCATGACAGATTT
*
58459412 GGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGTAGATCTGACATTCGTGTGTTTACATC
66 GGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGTAGATCTGACATTCGTGTGTTTAAATC
58459477 GAAGCAGATCAAAGATGACAGATTTGGCATTTCTGTATTAGACGAGGAGAAGATCGAAGATAGCA
131 GAAGCAGATCAAAGATGACAGATTTGGCATTTCTGTATTAGACGAGGAGAAGATCGAAGATAGCA
*
58459542 GATCTAACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTA
196 GATCTAACATTCGTGTGTTTAAATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTA
* * *
58459607 GATGGGGAGCATATCGAAGATAGAAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAGA
261 GACGGGGAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTGTACATCGAAGCAGATCAAAGA
* * *
58459672 TGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGAT-GTGACATTCGT
326 TGACAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCAGATCG-GACATTCAT
58459736 GTGTTTACATCGAAAT
390 GTGTTTACATCGAAAT
* *
58459752 AGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCAAAG-ATGACCGATT
1 AGATCAAAGATAGCAGAGCTGACATTCGTGTGTTTACATCGAAGCAGATC-AAGCATGACAGATT
* *
58459816 TGGCATCTCTGTATTAGACGGGGAGCATATCGAAGATAGTAGATCTGACATTCGTGTGTTTAAAT
65 TGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGTAGATCTGACATTCGTGTGTTTAAAT
* * * * * *
58459881 TGAAGCAGATCGAGGATGACAGATTTGGCGTCTT-TGTATTAGACGGGGAGCAGATCGAAGATAG
130 CGAAGCAGATCAAAGATGACAGATTTGGCAT-TTCTGTATTAGACGAGGAGAAGATCGAAGATAG
* * * * *
58459945 TAGATCTGACATTCGTGTGTTTAAATTGAAGCAGATCGAGGATGACAGATTTGGCGTCTTTGTAT
194 CAGATCTAACATTCGTGTGTTTAAATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTAT
* * *
58460010 TAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTGTACATTGAAGCAGATCGAA
259 TAGACGGGGAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTGTACATCGAAGCAGATCAAA
*
58460075 GATGATAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCAGATCGGACATTCA
324 GATGACAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCAGATCGGACATTCA
58460140 TGTGTTTACATCGAA
389 TGTGTTTACATCGAA
58460155 GCAGATCGAA
Statistics
Matches: 369, Mismatches: 31, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
405 364 0.99
406 5 0.01
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (405 bp):
AGATCAAAGATAGCAGAGCTGACATTCGTGTGTTTACATCGAAGCAGATCAAGCATGACAGATTT
GGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGTAGATCTGACATTCGTGTGTTTAAATC
GAAGCAGATCAAAGATGACAGATTTGGCATTTCTGTATTAGACGAGGAGAAGATCGAAGATAGCA
GATCTAACATTCGTGTGTTTAAATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCTGTATTA
GACGGGGAGCAGATCGAAGATAGAAGATCTGACATTCGTGTGTGTACATCGAAGCAGATCAAAGA
TGACAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCAGATCGGACATTCATG
TGTTTACATCGAAAT
Found at i:58464575 original size:80 final size:80
Alignment explanation
Indices: 58464224--58464540 Score: 589
Period size: 80 Copynumber: 4.0 Consensus size: 80
58464214 GAGAATTGAG
*
58464224 AGTGATATATCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCG
1 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCG
58464289 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
58464304 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCG
1 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCG
58464369 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
58464384 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCG
1 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCG
58464449 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * *
58464464 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGAGATATATCCGTGCTAAACCCCG
1 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCG
58464529 AAGAGCATTCGT
66 AAGAGCATTCGT
58464541 TCTGGTGTTA
Statistics
Matches: 232, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 232 1.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (80 bp):
AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAATCCCG
AAGAGCATTCGTGCT
Found at i:58464587 original size:40 final size:40
Alignment explanation
Indices: 58464224--58464575 Score: 479
Period size: 40 Copynumber: 8.8 Consensus size: 40
58464214 GAGAATTGAG
* **
58464224 AGTGATATATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
58464264 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
58464304 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
58464344 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
58464384 AGTGATGTATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
58464424 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
58464464 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * ** *
58464504 AGAGATATATCCGTGCTAAACCCCGAAGAGCATTCGTTCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
58464544 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
58464576 ATCATGCTGG
Statistics
Matches: 269, Mismatches: 43, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 269 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:58468219 original size:45 final size:45
Alignment explanation
Indices: 58468154--58468977 Score: 352
Period size: 45 Copynumber: 18.3 Consensus size: 45
58468144 TTAGACGAGG
* *
58468154 AGCAGATCGAAGAT-AGCAGATCTAACATTTGTGTGTTTACATCGA
1 AGCAGATCGAAGATGA-CAGATCTGACATTCGTGTGTTTACATCGA
* * * * * * * *
58468199 AGCAGATCGAAGATGACAGATTTGGCGTCTC-CGT-ATTAGATGGGG
1 AGCAGATCGAAGATGACAGATCTGACAT-TCGTGTGTTTACAT-CGA
* *
58468244 AGCATATCGAAGATAGA-AGATCTGAAATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGAT-GACAGATCTGACATTCGTGTGTTTACATCGA
* * * * * * *
58468289 AGCAGATCAAAGATGACAGATTTGGCGTCTC-TGT-ATTAGA-CGGGG
1 AGCAGATCGAAGATGACAGATCTGACAT-TCGTGTGTTTACATC--GA
* * *
58468334 AGCAGATCGAAAAT-AGCAGATGTGACATTCGTGTGTTTACATCAA
1 AGCAGATCGAAGATGA-CAGATCTGACATTCGTGTGTTTACATCGA
** *
58468379 AATAGATCAAAGAT-AGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATGA-CAGATCTGACATTCGTGTGTTTACATCGA
* * * * * * *
58468424 AGCAG-TCGAAGATGACCGATTTGGCGTCTC-TGT-ATTAGA-CGGGG
1 AGCAGATCGAAGATGACAGATCTGACAT-TCGTGTGTTTACATC--GA
* * *
58468468 AGCAGATCGAAGAT-AGTAGATCTGACATTCGTGTGTTTAAATTGA
1 AGCAGATCGAAGATGA-CAGATCTGACATTCGTGTGTTTACATCGA
* * * * *
58468513 AGCAGATCGAGGATGACAGATTTG--GTGTC-TTTGTATTAGA-CGGA
1 AGCAGATCGAAGATGACAGATCTGACAT-TCGTGTGT-TTACATC-GA
58468557 GAGCAGATCGAAGAT-AGCAGATCTGACATTCGTGTGTTTACATCGA
1 -AGCAGATCGAAGATGA-CAGATCTGACATTCGTGTGTTTACATCGA
* * * ** * *
58468603 AGCAGATCGAAGATGATAGATTTG--GTGTC-TCCGTATTAGA-CGGGG
1 AGCAGATCGAAGATGACAGATCTGACAT-TCGTGTGT-TTACATC--GA
*
58468648 AGCAGATCGAAGAT-AGCAGATCTGACATTCGTTTGTTTACATCGA
1 AGCAGATCGAAGATGA-CAGATCTGACATTCGTGTGTTTACATCGA
* * * * * * * * *
58468693 AGCAGAGCAAAGATGATAGATTTG-GAGTC-TCTGTATTAGA-CGGGG
1 AGCAGATCGAAGATGACAGATCTGACATTCGTGTGT-TTACATC--GA
*
58468738 AGCAGATCGAAGAT-AGCAGATCTGACATTCATGTGTTTACATCGA
1 AGCAGATCGAAGATGA-CAGATCTGACATTCGTGTGTTTACATCGA
* ** * * * * *
58468783 AACAGATTAAAGATGACAGATTTGGCGTCTC-TGT-ATTAGA-CGGA
1 AGCAGATCGAAGATGACAGATCTGACAT-TCGTGTGTTTACATC-GA
* * * *
58468827 GAGTAAATCGAAGAT-AGCAAATCTGACATTCATGTGTTTACATCGA
1 -AGCAGATCGAAGATGA-CAGATCTGACATTCGTGTGTTTACATCGA
** * * * * * * *
58468873 AATAGATCAAAGATGACAGATTTGGCGTCTC-TGT-ATTAGA-CGGGG
1 AGCAGATCGAAGATGACAGATCTGACAT-TCGTGTGTTTACATC--GA
*
58468918 AGCAGATCGAAGAT-AGCAGATCTGACATTCGTGTGGTGTACATCGA
1 AGCAGATCGAAGATGA-CAGATCTGACATTCGTGT-GTTTACATCGA
58468964 AGCAGATCGAAGAT
1 AGCAGATCGAAGAT
58468978 AGCAGATTTG
Statistics
Matches: 565, Mismatches: 146, Indels: 135
0.67 0.17 0.16
Matches are distributed among these distances:
42 1 0.00
43 22 0.04
44 83 0.15
45 367 0.65
46 70 0.12
47 21 0.04
48 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (45 bp):
AGCAGATCGAAGATGACAGATCTGACATTCGTGTGTTTACATCGA
Found at i:58468494 original size:134 final size:135
Alignment explanation
Indices: 58468253--58468506 Score: 438
Period size: 134 Copynumber: 1.9 Consensus size: 135
58468243 GAGCATATCG
58468253 AAGATAGAAGATCTGAAATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGCGTC
1 AAGATAGAAGATCTGAAATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGCGTC
*
58468318 TCTGTATTAGACGGGGAGCAGATCGAAAATAGCAGATGTGACATTCGTGTGTTTACATCAAAATA
66 TCTGTATTAGACGGGGAGCAGATCGAAAATAGCAGATCTGACATTCGTGTGTTTACATCAAAATA
58468383 GATCA
131 GATCA
* * * *
58468388 AAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAG-TCGAAGATGACCGATTTGGCGTC
1 AAGATAGAAGATCTGAAATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGCGTC
* *
58468452 TCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTA
66 TCTGTATTAGACGGGGAGCAGATCGAAAATAGCAGATCTGACATTCGTGTGTTTA
58468507 AATTGAAGCA
Statistics
Matches: 112, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
134 73 0.65
135 39 0.35
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (135 bp):
AAGATAGAAGATCTGAAATTCGTGTGTTTACATCGAAGCAGATCAAAGATGACAGATTTGGCGTC
TCTGTATTAGACGGGGAGCAGATCGAAAATAGCAGATCTGACATTCGTGTGTTTACATCAAAATA
GATCA
Found at i:58468554 original size:224 final size:225
Alignment explanation
Indices: 58468157--58468600 Score: 719
Period size: 224 Copynumber: 2.0 Consensus size: 225
58468147 GACGAGGAGC
* *
58468157 AGATCGAAGATAGCAGATCTAACATTTGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTT
1 AGATCAAAGATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTT
* * *
58468222 GGCGTCTCCGTATTAGATGGGGAGCATATCGAAGATAGAAGATCTGAAATTCGTGTGTTTACATC
66 GGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGAAGATCTGAAATTCGTGTGTTTAAATC
*
58468287 GAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAAATAGCA
131 GAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAAATAGCA
*
58468352 GATGTGACATTCGTGTGTTTACATCAAAAT
196 GATCTGACATTCGTGTGTTTACATCAAAAT
* *
58468382 AGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAG-TCGAAGATGACCGATTT
1 AGATCAAAGATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTT
* * * *
58468446 GGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGTAGATCTGACATTCGTGTGTTTAAATT
66 GGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGAAGATCTGAAATTCGTGTGTTTAAATC
* * * * *
58468511 GAAGCAGATCGAGGATGACAGATTTGGTGTCTTTGTATTAGACGGAGAGCAGATCGAAGATAGCA
131 GAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAAATAGCA
58468576 GATCTGACATTCGTGTGTTTACATC
196 GATCTGACATTCGTGTGTTTACATC
58468601 GAAGCAGATC
Statistics
Matches: 201, Mismatches: 18, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
224 157 0.78
225 44 0.22
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.28
Consensus pattern (225 bp):
AGATCAAAGATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTT
GGCGTCTCCGTATTAGACGGGGAGCAGATCGAAGATAGAAGATCTGAAATTCGTGTGTTTAAATC
GAAGCAGATCAAAGATGACAGATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCGAAAATAGCA
GATCTGACATTCGTGTGTTTACATCAAAAT
Found at i:58468567 original size:90 final size:90
Alignment explanation
Indices: 58468382--58469023 Score: 946
Period size: 90 Copynumber: 7.1 Consensus size: 90
58468372 ACATCAAAAT
* *
58468382 AGATCAAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAG-TCGAAGATGACCGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTT
58468446 GGCGTCTCTGTATTAGACGGGGAGC
66 GGCGTCTCTGTATTAGACGGGGAGC
* * * *
58468471 AGATCGAAGATAGTAGATCTGACATTCGTGTGTTTAAATTGAAGCAGATCGAGGATGACAGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTT
* * *
58468536 GGTGTCTTTGTATTAGACGGAGAGC
66 GGCGTCTCTGTATTAGACGGGGAGC
*
58468561 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGATAGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTT
* *
58468626 GGTGTCTCCGTATTAGACGGGGAGC
66 GGCGTCTCTGTATTAGACGGGGAGC
* * * *
58468651 AGATCGAAGATAGCAGATCTGACATTCGTTTGTTTACATCGAAGCAGAGCAAAGATGATAGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTT
*
58468716 GGAGTCTCTGTATTAGACGGGGAGC
66 GGCGTCTCTGTATTAGACGGGGAGC
* * **
58468741 AGATCGAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAACAGATTAAAGATGACAGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTT
* *
58468806 GGCGTCTCTGTATTAGACGGAGAGT
66 GGCGTCTCTGTATTAGACGGGGAGC
* * * ** *
58468831 AAATCGAAGATAGCAAATCTGACATTCATGTGTTTACATCGAAATAGATCAAAGATGACAGATTT
1 AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTT
58468896 GGCGTCTCTGTATTAGACGGGGAGC
66 GGCGTCTCTGTATTAGACGGGGAGC
*
58468921 AGATCGAAGATAGCAGATCTGACATTCGTGTGGTGTACATCGAAGCAGATCGAAGAT-AGCAGAT
1 AGATCGAAGATAGCAGATCTGACATTCGTGT-GTTTACATCGAAGCAGATCGAAGATGA-CAGAT
* * *
58468985 TTGGCGTCTCTGTATTTGATGAGGAGC
64 TTGGCGTCTCTGTATTAGACGGGGAGC
*
58469012 AGATCAAAGATA
1 AGATCGAAGATA
58469024 TTAACAAGGC
Statistics
Matches: 502, Mismatches: 48, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
89 43 0.09
90 398 0.79
91 61 0.12
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (90 bp):
AGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTT
GGCGTCTCTGTATTAGACGGGGAGC
Done.