Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 174 of 284
Found at i:58470606 original size:46 final size:46
Alignment explanation
Indices: 58470508--58470611 Score: 106
Period size: 46 Copynumber: 2.3 Consensus size: 46
58470498 ATTTTAATCC
* ** * * *
58470508 TTTTATATATTTTTTTTTATAATTTATTTATTTTAAATATTTTGTA
1 TTTTATTTATTTTACTTTATAATTTATTTATTGTAAAAATATTGTA
*
58470554 TATTATTTATTTTACTTTA-AACTTTATTTATATGTAAAAATATT-TA
1 TTTTATTTATTTTACTTTATAA-TTTATTTAT-TGTAAAAATATTGTA
58470600 TTTTATTT-TTTT
1 TTTTATTTATTTT
58470612 GTATTATCTA
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
45 6 0.12
46 33 0.69
47 9 0.19
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (46 bp):
TTTTATTTATTTTACTTTATAATTTATTTATTGTAAAAATATTGTA
Found at i:58470642 original size:26 final size:26
Alignment explanation
Indices: 58470593--58470667 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
58470583 ATATGTAAAA
*
58470593 ATAT-TTATTTTATTT-T-TTTGTATT
1 ATATATTATATTATTTATATTT-TATT
*
58470617 ATCTATTATATTATTTATATTTTATT
1 ATATATTATATTATTTATATTTTATT
* *
58470643 GTATATTATATTATGTATAATTTTA
1 ATATATTATATTATTTAT-ATTTTA
58470668 AAATCTGTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
24 3 0.07
25 10 0.24
26 20 0.48
27 9 0.21
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.65
Consensus pattern (26 bp):
ATATATTATATTATTTATATTTTATT
Found at i:58470648 original size:62 final size:62
Alignment explanation
Indices: 58470532--58470648 Score: 141
Period size: 62 Copynumber: 1.9 Consensus size: 62
58470522 TTTTATAATT
*
58470532 TATTTATTTTAAATATTTTGTATATTATTTATTTTACTTTAAACTTTATTTATATGTAAAAA
1 TATTTATTTTAAATATTTTGTATATTATTTATATTACTTTAAACTTTATTTATATGTAAAAA
* * * *
58470594 TATTTATTTT-ATTTTTTTGTATTATCTA-TTATATTA-TTTATATTTTATTGTATAT
1 TATTTATTTTAAATATTTTGTA-TAT-TATTTATATTACTTTAAACTTTATT-TATAT
58470649 TATATTATGT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
61 20 0.43
62 25 0.53
63 2 0.04
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (62 bp):
TATTTATTTTAAATATTTTGTATATTATTTATATTACTTTAAACTTTATTTATATGTAAAAA
Found at i:58470655 original size:31 final size:32
Alignment explanation
Indices: 58470597--58470656 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 32
58470587 GTAAAAATAT
* *
58470597 TTATTT-TATTTTTTTGTAT-TATCTATTATA
1 TTATTTATATTTTATTGTATATATATATTATA
58470627 TTATTTATATTTTATTGTATAT-TATATTAT
1 TTATTTATATTTTATTGTATATATATATTAT
58470657 GTATAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 6 0.23
31 19 0.73
32 1 0.04
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (32 bp):
TTATTTATATTTTATTGTATATATATATTATA
Found at i:58470659 original size:14 final size:14
Alignment explanation
Indices: 58470620--58470661 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
58470610 TTGTATTATC
*
58470620 TATTATATTATTTA
1 TATTATATTATGTA
*
58470634 TATTTTA-T-TGTA
1 TATTATATTATGTA
58470646 TATTATATTATGTA
1 TATTATATTATGTA
58470660 TA
1 TA
58470662 ATTTTAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 9 0.39
13 2 0.09
14 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (14 bp):
TATTATATTATGTA
Found at i:58470889 original size:17 final size:16
Alignment explanation
Indices: 58470867--58470966 Score: 55
Period size: 18 Copynumber: 6.1 Consensus size: 16
58470857 ATTATTTATA
58470867 TATTTTTTTAAATATTT
1 TATTTTTTT-AATATTT
*
58470884 TA-TTTTTTAATACTT
1 TATTTTTTTAATATTT
* *
58470899 CATTTATTTTTAATTGTATT
1 TA-TT-TTTTTAA-TAT-TT
* *
58470919 TAGTTTTTT-ATATAT
1 TATTTTTTTAATATTT
*
58470934 T-TTTTTTT-ATAATT
1 TATTTTTTTAATATTT
58470948 TATTTATTTTAAATATTT
1 TATTT-TTTT-AATATTT
58470966 T
1 T
58470967 GTATATTATT
Statistics
Matches: 62, Mismatches: 12, Indels: 17
0.68 0.13 0.19
Matches are distributed among these distances:
14 11 0.18
15 12 0.19
16 12 0.19
17 4 0.06
18 18 0.29
19 2 0.03
20 3 0.05
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (16 bp):
TATTTTTTTAATATTT
Found at i:58470934 original size:16 final size:15
Alignment explanation
Indices: 58470854--58470982 Score: 74
Period size: 14 Copynumber: 8.5 Consensus size: 15
58470844 AAAAATCTCC
*
58470854 TTTATTATTTATATA
1 TTTATTTTTTATATA
**
58470869 TTT-TTTTAAATAT-
1 TTTATTTTTTATATA
58470882 TTTATTTTTTAATACTTCA
1 TTTATTTTTT-ATA--T-A
* *
58470901 TTTATTTTTAATTGTA
1 TTTATTTTTTA-TATA
58470917 TTTAGTTTTTTATATA
1 TTTA-TTTTTTATATA
58470933 TTT-TTTTTTATA-A
1 TTTATTTTTTATATA
58470946 TTTATTTATTT-TA-A
1 TTTATTT-TTTATATA
* *
58470960 -ATATTTTGTATATTA
1 TTTATTTTTTATA-TA
58470975 TTTATTTT
1 TTTATTTT
58470983 ACTTTAAACT
Statistics
Matches: 88, Mismatches: 12, Indels: 27
0.69 0.09 0.21
Matches are distributed among these distances:
12 2 0.02
13 14 0.16
14 26 0.30
15 10 0.11
16 17 0.19
17 8 0.09
18 1 0.01
19 10 0.11
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (15 bp):
TTTATTTTTTATATA
Found at i:58471022 original size:46 final size:46
Alignment explanation
Indices: 58470924--58471027 Score: 106
Period size: 46 Copynumber: 2.3 Consensus size: 46
58470914 GTATTTAGTT
* ** * * *
58470924 TTTTATATATTTTTTTTTATAATTTATTTATTTTAAATATTTTGTA
1 TTTTATTTATTTTACTTTATAATTTATTTATTGTAAAAATATTGTA
*
58470970 TATTATTTATTTTACTTTA-AACTTTATTTATATGTAAAAATATT-TA
1 TTTTATTTATTTTACTTTATAA-TTTATTTAT-TGTAAAAATATTGTA
58471016 TTTTATTT-TTTT
1 TTTTATTTATTTT
58471028 GCATTATCTA
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
45 6 0.12
46 33 0.69
47 9 0.19
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (46 bp):
TTTTATTTATTTTACTTTATAATTTATTTATTGTAAAAATATTGTA
Found at i:58471075 original size:14 final size:14
Alignment explanation
Indices: 58471036--58471077 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
58471026 TTGCATTATC
*
58471036 TATTATATTATTTA
1 TATTATATTATGTA
*
58471050 TATTTTA-T-TGTA
1 TATTATATTATGTA
58471062 TATTATATTATGTA
1 TATTATATTATGTA
58471076 TA
1 TA
58471078 ATTTTAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 9 0.39
13 2 0.09
14 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (14 bp):
TATTATATTATGTA
Found at i:58472716 original size:28 final size:27
Alignment explanation
Indices: 58472647--58472738 Score: 118
Period size: 28 Copynumber: 3.4 Consensus size: 27
58472637 GATATGACAT
*
58472647 TGTGCTAAGTGAAATAAGACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
* *
58472674 --T-ATAAGTGAAATAAGTCTATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
58472699 TGTGCTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
58472726 TCGTGCTAAGTGA
1 T-GTGCTAAGTGA
58472739 GAAATTTCCT
Statistics
Matches: 55, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
24 19 0.35
25 2 0.04
27 3 0.05
28 31 0.56
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:58472817 original size:51 final size:51
Alignment explanation
Indices: 58472762--58473011 Score: 401
Period size: 51 Copynumber: 4.9 Consensus size: 51
58472752 TGAACCTTAG
* *
58472762 GAATAAAATAGCTTTGGACAAAAGTGTGGTACTATGTGAAGGCCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
58472813 GAATATAATAGCTTTGGACACAAATGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
58472864 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGTCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
58472915 GAATAAAATAGATTTGGACACAAGTGTGGCACTATGTGAAGGCCATTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
58472966 GAATAAAATAGCTTTGGATACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCAC
58473012 CGTGTATCCA
Statistics
Matches: 183, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 183 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:58491489 original size:15 final size:16
Alignment explanation
Indices: 58491462--58491491 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
58491452 AGATATTCCA
58491462 ATTTAGTCCCATTTTT
1 ATTTAGTCCCATTTTT
58491478 ATTTAG-CCCATTTT
1 ATTTAGTCCCATTTT
58491492 GGCAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (16 bp):
ATTTAGTCCCATTTTT
Found at i:58494510 original size:840 final size:838
Alignment explanation
Indices: 58492733--58494416 Score: 2936
Period size: 840 Copynumber: 2.0 Consensus size: 838
58492723 TAAGTTGCTG
* * * ** *
58492733 AAATTTTGAAGCTCAAAACCCCTAAAAATGGCTGAATTTTCGGTGGAGGAGAAATGGTGAAAAAG
1 AAATTTTGAAGCTCAAAACCCCTAAAAACGACTGAATCTTCAATGGAGGAG-AATGCTGAAAAAG
* * * ****** *
58492798 GATGATATCATCTTTCTTTTATTTTTTTTCATTTTGGTCAAAATAAATCACCAAACTTCACCTAA
65 GATGATATAAACCTAAAGCGA-TTGTTTTCATTTTGGTCAAAATAAATCACCAAACTTCACCTAA
*
58492863 TGCTTGACTATTTTAATTTCTTGTCCCATGCCTGACCATCACCTATTTAATGGCCTAATTTCAGT
129 TGCTTGACTATTTTAATTTCTTGCCCCATGCCTGACCATCACCTATTTAATGGCCTAATTTCAGT
58492928 TTAAAAACCCCCAAATTTGACACCCTTAGATATCAATTTAAGACTTTTGCACTTTATGCGATTTA
194 TTAAAAACCCCCAAATTTGACACCCTTAGATATCAATTTAAGACTTTTGCACTTTATGCGATTTA
58492993 GTCCTTTTTCGCAATTGGGCTCACAAACGTCAAAATTAACTTACCAAAATTTTTATGCACTAATA
259 GTCCTTTTTCGCAATTGGGCTCACAAACGTCAAAATTAACTTACCAAAATTTTTATGCACTAATA
58493058 TAAACATGCCATGACTCCAAAAATAATTAACAAGATAATTTTCCCGACTTTAGATTTTTGGTCCC
324 TAAACATGCCATGACTCCAAAAATAATTAACAAGATAATTTTCCCGACTTTAGATTTTTGGTCCC
58493123 GAGACCACTATTCTGACTAGCCCCAAAATCGGGCTGTTACATGTTAGCTAAGTTGAAAACAGTTG
389 GAGACCACTATTCTGACTAGCCCCAAAATCGGGCTGTTACATGTTAGCTAAGTTGAAAACAGTTG
58493188 AAGATATTATTAACCGAAGCTCTGGTTCTGAGTTCAGTTTGAATTTATGATTTTTCAGTGATGTA
454 AAGATATTATTAACCGAAGCTCTGGTTCTGAGTTCAGTTTGAATTTATGATTTTTCAGTGATGTA
58493253 CTATGAACGGATTGGAATGTGTTTTATTACTAGAATGTAAAGTGATGGTTCATGTTTACATACGG
519 CTATGAACGGATTGGAATGTGTTTTATTACTAGAATGTAAAGTGATGGTTCATGTTTACATACGG
*
58493318 TTAATGTCACATTAAAAAGAACTGTTCGACCAGTGATTTAAAGACGATCACTTTTTTTTTCTGTA
584 TTAATGTCACATTAAAAAGAACTGTTCGACCAGTGATTTAAAGACGATCACTCTTTTTTTCTGTA
58493383 TTGAGAATTTGGTGATATCGTTTAATCGAAGAAAAGTGTCACATGTTCCCTGATTTCAAGAATTG
649 TTGAGAATTTGGTGATATCGTTTAATCGAAGAAAAGTGTCACATGTTCCCTGATTTCAAGAATTG
* *
58493448 AAGTATCGAATGTCATAGAAAGATCTGAAGTTAAGATAGTGTTAAAGACTTAAACTATTGAAAGA
714 AAGTATCGAATGTCATAGAAAGATCTGAAGTTAAGATAGTGTTAAAGACTTAAACTACTAAAAGA
*
58493513 TCGCGAGTAGTTATTATTTGATCTCTGGGAAAGTAGATATAGTTATAGATACTAAATGGA
779 TCGCGAGTAGTTATTATTTAATCTCTGGGAAAGTAGATATAGTTATAGATACTAAATGGA
* * * ** *
58493573 AAATTTTGAAGCTCAAAACCCCTAAAAATGGCTGAATTTTCGGTGGAGGAGAAATGGTGAAAAAG
1 AAATTTTGAAGCTCAAAACCCCTAAAAACGACTGAATCTTCAATGGAGGAG-AATGCTGAAAAAG
* * * ****** *
58493638 GATGATATCATCTTTCTTTTATTTTTTTTCATTTTGGTCAAAATAAATCACCAAACTTCACCTAA
65 GATGATATAAACCTAAAGCGA-TTGTTTTCATTTTGGTCAAAATAAATCACCAAACTTCACCTAA
*
58493703 TGCTTGACTATTTTAATTTCTTGCCCCATGGCTGACCATCACCTATTTAATGGCCTAATTTCAGT
129 TGCTTGACTATTTTAATTTCTTGCCCCATGCCTGACCATCACCTATTTAATGGCCTAATTTCAGT
* *
58493768 TTAAAGACCCCTAAATTTGACACCCTTAGATATCAATTTAAGACTTTTGCACTTTATGCGATTTA
194 TTAAAAACCCCCAAATTTGACACCCTTAGATATCAATTTAAGACTTTTGCACTTTATGCGATTTA
58493833 GTCCTTTTTCGCAATTGGGCTCACAAACGTCAAAATTAACTTACCAAAATTTTTATGCACTAATA
259 GTCCTTTTTCGCAATTGGGCTCACAAACGTCAAAATTAACTTACCAAAATTTTTATGCACTAATA
58493898 TAAACATGCCATGACTCCAAAAATAATTAACAAGATAATTTTCCCGACTTTAGATTTTTGGTCCC
324 TAAACATGCCATGACTCCAAAAATAATTAACAAGATAATTTTCCCGACTTTAGATTTTTGGTCCC
58493963 GAGACCACTATTCTGACTAGCCCCAAAATCGGGCTGTTACATGTTAGCTAAGTTGAAAACAGTTG
389 GAGACCACTATTCTGACTAGCCCCAAAATCGGGCTGTTACATGTTAGCTAAGTTGAAAACAGTTG
58494028 AAGATATTATTAACCGAAGCTCTGGTTCTGAGTTCAGTTTGAATTTATGATTTTTCAGTGATGTA
454 AAGATATTATTAACCGAAGCTCTGGTTCTGAGTTCAGTTTGAATTTATGATTTTTCAGTGATGTA
58494093 CTATTGAACGGATTGGAATGTGTTTTATTACTAGAATGTAAAGTGATGGTTCATGTTTACATACG
519 CTA-TGAACGGATTGGAATGTGTTTTATTACTAGAATGTAAAGTGATGGTTCATGTTTACATACG
58494158 GTTAATGTCACATTAAAAAGAACTGTTCGACCAGTGATTTAAAGACGATCACTCTTTTTTTCTGT
583 GTTAATGTCACATTAAAAAGAACTGTTCGACCAGTGATTTAAAGACGATCACTCTTTTTTTCTGT
58494223 ATTGAGAATTTGGTGATATCGTTTAATCGAAGAAAAGTGTCACATGTTCCCTGATTTCAAGAATT
648 ATTGAGAATTTGGTGATATCGTTTAATCGAAGAAAAGTGTCACATGTTCCCTGATTTCAAGAATT
*
58494288 GAAGTATCGAATGTCATAGAAAGATCTGAAGTTAAGATAGTGTTAAAGACTTGAACTACTAAAAG
713 GAAGTATCGAATGTCATAGAAAGATCTGAAGTTAAGATAGTGTTAAAGACTTAAACTACTAAAAG
* *
58494353 ATCGCGAGTAGTTATTATTTAATCTCTGGGAAAGTAGATATAGTTATAGATATTGAATGGA
778 ATCGCGAGTAGTTATTATTTAATCTCTGGGAAAGTAGATATAGTTATAGATACTAAATGGA
58494414 AAA
1 AAA
58494417 ATCTTTGTTT
Statistics
Matches: 832, Mismatches: 11, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
840 519 0.62
841 313 0.38
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35
Consensus pattern (838 bp):
AAATTTTGAAGCTCAAAACCCCTAAAAACGACTGAATCTTCAATGGAGGAGAATGCTGAAAAAGG
ATGATATAAACCTAAAGCGATTGTTTTCATTTTGGTCAAAATAAATCACCAAACTTCACCTAATG
CTTGACTATTTTAATTTCTTGCCCCATGCCTGACCATCACCTATTTAATGGCCTAATTTCAGTTT
AAAAACCCCCAAATTTGACACCCTTAGATATCAATTTAAGACTTTTGCACTTTATGCGATTTAGT
CCTTTTTCGCAATTGGGCTCACAAACGTCAAAATTAACTTACCAAAATTTTTATGCACTAATATA
AACATGCCATGACTCCAAAAATAATTAACAAGATAATTTTCCCGACTTTAGATTTTTGGTCCCGA
GACCACTATTCTGACTAGCCCCAAAATCGGGCTGTTACATGTTAGCTAAGTTGAAAACAGTTGAA
GATATTATTAACCGAAGCTCTGGTTCTGAGTTCAGTTTGAATTTATGATTTTTCAGTGATGTACT
ATGAACGGATTGGAATGTGTTTTATTACTAGAATGTAAAGTGATGGTTCATGTTTACATACGGTT
AATGTCACATTAAAAAGAACTGTTCGACCAGTGATTTAAAGACGATCACTCTTTTTTTCTGTATT
GAGAATTTGGTGATATCGTTTAATCGAAGAAAAGTGTCACATGTTCCCTGATTTCAAGAATTGAA
GTATCGAATGTCATAGAAAGATCTGAAGTTAAGATAGTGTTAAAGACTTAAACTACTAAAAGATC
GCGAGTAGTTATTATTTAATCTCTGGGAAAGTAGATATAGTTATAGATACTAAATGGA
Found at i:58497628 original size:26 final size:26
Alignment explanation
Indices: 58497579--58497653 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
58497569 ATATGTAAAA
*
58497579 ATAT-TTATTTTATTT-T-TTTGTATT
1 ATATATTATATTATTTATATTT-TATT
*
58497603 ATCTATTATATTATTTATATTTTATT
1 ATATATTATATTATTTATATTTTATT
* *
58497629 GTATATTATATTATGTATAATTTTA
1 ATATATTATATTATTTAT-ATTTTA
58497654 AAATCTGTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
24 3 0.07
25 10 0.24
26 20 0.48
27 9 0.21
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.65
Consensus pattern (26 bp):
ATATATTATATTATTTATATTTTATT
Found at i:58497641 original size:31 final size:32
Alignment explanation
Indices: 58497583--58497642 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 32
58497573 GTAAAAATAT
* *
58497583 TTATTT-TATTTTTTTGTAT-TATCTATTATA
1 TTATTTATATTTTATTGTATATATATATTATA
58497613 TTATTTATATTTTATTGTATAT-TATATTAT
1 TTATTTATATTTTATTGTATATATATATTAT
58497643 GTATAATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 6 0.23
31 19 0.73
32 1 0.04
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (32 bp):
TTATTTATATTTTATTGTATATATATATTATA
Found at i:58497645 original size:14 final size:14
Alignment explanation
Indices: 58497606--58497647 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
58497596 TTGTATTATC
*
58497606 TATTATATTATTTA
1 TATTATATTATGTA
*
58497620 TATTTTA-T-TGTA
1 TATTATATTATGTA
58497632 TATTATATTATGTA
1 TATTATATTATGTA
58497646 TA
1 TA
58497648 ATTTTAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
12 9 0.39
13 2 0.09
14 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (14 bp):
TATTATATTATGTA
Found at i:58503587 original size:49 final size:49
Alignment explanation
Indices: 58503515--58503612 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
58503505 TCAGAAAAGT
58503515 TTCGACCAACTGAAAACTCATTTGACTGAAGCTCCAATTTTGGTGCAAC
1 TTCGACCAACTGAAAACTCATTTGACTGAAGCTCCAATTTTGGTGCAAC
*
58503564 TTCGATCAACTGAAAACTCATTTGACTGAAGCTCCAATTTTGGTGCAAC
1 TTCGACCAACTGAAAACTCATTTGACTGAAGCTCCAATTTTGGTGCAAC
58503613 CCGAATCAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (49 bp):
TTCGACCAACTGAAAACTCATTTGACTGAAGCTCCAATTTTGGTGCAAC
Found at i:58507196 original size:64 final size:64
Alignment explanation
Indices: 58507077--58507196 Score: 152
Period size: 64 Copynumber: 1.9 Consensus size: 64
58507067 TGCTAAGTGA
* * ** *
58507077 ATATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCGAAGTTG
1 ATATATCCGGACTAAGACCCGAAGGCATTTGTGCCAGATACAAACGCCGGATTAAGCGAAGTTG
* * *
58507141 ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCCAG-TCCAAACGCTTGGATTAAG
1 ATATATCCGGACTAAGACCCGAAGGCATTTGTGCCAGATACAAACGC-CGGATTAAG
58507197 GAGTGATAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
63 6 0.13
64 41 0.87
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (64 bp):
ATATATCCGGACTAAGACCCGAAGGCATTTGTGCCAGATACAAACGCCGGATTAAGCGAAGTTG
Found at i:58507359 original size:39 final size:39
Alignment explanation
Indices: 58507258--58507375 Score: 164
Period size: 40 Copynumber: 3.0 Consensus size: 39
58507248 CGAATTTACT
* *
58507258 TTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCA
1 TTGTGCGAGTTACTAAATCCGGGTTATGTCCCGAAGGCA
**
58507297 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCA
1 TT-GTGCGAGTTACTAAATCCGGGTTATGTCCCGAAGGCA
* * *
58507337 TTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCA
1 TTGTGCGAGTTACTAAATCCGGGTTATGTCCCGAAGGCA
58507376 ATTGAACGAG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
39 34 0.49
40 35 0.51
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (39 bp):
TTGTGCGAGTTACTAAATCCGGGTTATGTCCCGAAGGCA
Found at i:58513298 original size:47 final size:46
Alignment explanation
Indices: 58513242--58513367 Score: 150
Period size: 47 Copynumber: 2.7 Consensus size: 46
58513232 ATCAAGAGGC
*
58513242 CGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAAT-T-CT
1 CGATGCATGTCCCAAACATGTCTTACACTAGCTCTC--AT-AATGTGCT
* * *
58513289 -GATGCCATGTCCCAGACATTGTCTTACACTGGCTCTCATAATGTGGT
1 CGATG-CATGTCCCAAACA-TGTCTTACACTAGCTCTCATAATGTGCT
58513336 CGATGCATGTCCCAAACATGTCTTACACTAGC
1 CGATGCATGTCCCAAACATGTCTTACACTAGC
58513368 ACACAAATAT
Statistics
Matches: 68, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
45 3 0.04
46 19 0.28
47 25 0.37
48 21 0.31
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (46 bp):
CGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAATGTGCT
Found at i:58513298 original size:94 final size:92
Alignment explanation
Indices: 58513146--58513367 Score: 243
Period size: 94 Copynumber: 2.4 Consensus size: 92
58513136 AGGTTTAATA
* * * *
58513146 CCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCACGTTAAGTCGATGTCATGTCCCAGA
1 CCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCT-ACGTTAAGTCGATGCCATGTCCCAGA
*
58513211 CATGGTCTTACATTAACAT-ACATCAA-GAGG
63 CATGGTCTTACACTAAC-TCACAT-AATGAGG
*
58513241 CCGATGCATGTCCCAAACATGTCTTACACTAGCTCT-CGTCTCAATTCTGATGCCATGTCCCAGA
1 CCGATGCATGTCCCAAACATGTCTTACACTAGCTCTACGT-T-AAGTC-GATGCCATGTCCCAGA
* ** * *
58513305 CATTGTCTTACACTGGCTCTCATAATGTGG
63 CATGGTCTTACACTAACTCACATAATGAGG
*
58513335 TCGATGCATGTCCCAAACATGTCTTACACTAGC
1 CCGATGCATGTCCCAAACATGTCTTACACTAGC
58513368 ACACAAATAT
Statistics
Matches: 110, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
91 3 0.03
92 1 0.01
93 21 0.19
94 79 0.72
95 6 0.05
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (92 bp):
CCGATGCATGTCCCAAACATGTCTTACACTAGCTCTACGTTAAGTCGATGCCATGTCCCAGACAT
GGTCTTACACTAACTCACATAATGAGG
Found at i:58515604 original size:40 final size:40
Alignment explanation
Indices: 58515496--58515626 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
58515486 TCTTCGGAAT
* * *
58515496 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
* * * * * *
58515535 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
* * *
58515575 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
58515615 TTAGCCCGGATA
1 TTAGCCCGGATA
58515627 TCATTCAAAT
Statistics
Matches: 75, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
39 3 0.04
40 72 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
Found at i:58521167 original size:80 final size:80
Alignment explanation
Indices: 58521063--58521287 Score: 298
Period size: 80 Copynumber: 2.8 Consensus size: 80
58521053 GCTACTCATT
* *
58521063 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
58521128 ATTTAGTAGCTCGCA
66 AATTAGTAGCTCGCA
*
58521143 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCATC-AATGCCTTCGGG-CTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA-CAAATGCCTTCGGGACTTAGCCC
*
58521205 GGAATTAGTATCTCGCA
64 GGAATTAGTAGCTCGCA
* * * *
58521222 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTCGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
58521285 GGA
64 GGA
58521288 CCTCATTCGA
Statistics
Matches: 128, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
78 4 0.03
79 56 0.44
80 65 0.51
81 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAGCTCGCA
Found at i:58521247 original size:119 final size:120
Alignment explanation
Indices: 58521065--58521287 Score: 303
Period size: 119 Copynumber: 1.9 Consensus size: 120
58521055 TACTCATTCA
*
58521065 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
*
58521130 TTAGT-AGC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATC
66 ATAGTCA-CTTCGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATC
* * **
58521185 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
58521247 ATATGGTCACTTCGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTCACTTCGCACAAAGCCTTCGGGACTTAACCCGGA
58521288 CCTCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
118 4 0.04
119 65 0.71
120 22 0.24
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTCACTTCGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCATC
Found at i:58521287 original size:40 final size:39
Alignment explanation
Indices: 58521044--58521287 Score: 264
Period size: 40 Copynumber: 6.1 Consensus size: 39
58521034 CGGAATTTAA
*** *
58521044 CCGGATATAGCTACTCATTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGC
* *
58521084 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGC
* *
58521124 CCGGATTTAGTAGCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGC
*
58521164 CCGGATTTAGTAACTCGCATC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGT-ACTCGCA-CAAATGCCTTCGGGACTTAGC
*
58521203 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTA-CTCGCACAAATGCCTTCGGGA-CTTAGC
*
58521243 CCGGATATGGTCACTTCGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGC
58521283 CCGGA
1 CCGGA
58521288 CCTCATTCGA
Statistics
Matches: 178, Mismatches: 13, Indels: 26
0.82 0.06 0.12
Matches are distributed among these distances:
38 4 0.02
39 31 0.17
40 127 0.71
41 16 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:58526775 original size:40 final size:40
Alignment explanation
Indices: 58526730--58526881 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
58526720 ATAACCACAA
* * *
58526730 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
58526770 GCACAAATGCCGTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * *
58526810 GCACAAATGCCTTCGGCTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
58526850 GCATAAATGCATTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
58526882 CATTCAAATG
Statistics
Matches: 97, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 92 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:58536748 original size:39 final size:39
Alignment explanation
Indices: 58536690--58536897 Score: 335
Period size: 39 Copynumber: 5.3 Consensus size: 39
58536680 GACTTAATGT
*
58536690 CTAGCAGGCCTCGTACCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
* *
58536729 CTAGCAGGCTTCGTGCCGGTGATAAATTCAAGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
* * *
58536768 TTAGTAGGCCTCGTGCTGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
58536807 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGG--TTTATAC
*
58536848 CTAGCAGGCCTCGTGCCAGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
58536887 CTAGCAGGCCT
1 CTAGCAGGCCT
58536898 TGTGACAGCC
Statistics
Matches: 155, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 117 0.75
41 38 0.25
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:58541324 original size:65 final size:65
Alignment explanation
Indices: 58541236--58541364 Score: 195
Period size: 65 Copynumber: 2.0 Consensus size: 65
58541226 TTGCGAATCT
* * *
58541236 GAGATTCAGATATTCCCAAAACTGCCTTCAGAACGAGATATGGTCACTACGAATTCTTAGTGATC
1 GAGATTCAGACATACCCAAAACTGCCTTCAGAACGAGATACGGTCACTACGAATTCTTAGTGATC
* * * *
58541301 GAGATTCGGACATACCCAAAACTGCTTTCAGAACGAGGTACGGTCACTACGAGTTCTTAGTGAT
1 GAGATTCAGACATACCCAAAACTGCCTTCAGAACGAGATACGGTCACTACGAATTCTTAGTGAT
58541365 GCCGTTTGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (65 bp):
GAGATTCAGACATACCCAAAACTGCCTTCAGAACGAGATACGGTCACTACGAATTCTTAGTGATC
Found at i:58542119 original size:282 final size:282
Alignment explanation
Indices: 58541615--58542176 Score: 1079
Period size: 282 Copynumber: 2.0 Consensus size: 282
58541605 GGTATCCGCG
* *
58541615 TCGGGTATTCGAGTTGACCCGAACAAAATTTCAGCCATACTTGACTGGAAACCTCCGAGAAATAT
1 TCGGGTATTCGAGTGGACCCGAACAAAATTTCAGCCATACTTAACTGGAAACCTCCGAGAAATAT
58541680 TACTGAGGTTCGGAGCTTTTTGGGACTTGCCGGCTACTACCGACGGTTTGTAAAAGGTTTCTCGA
66 TACTGAGGTTCGGAGCTTTTTGGGACTTGCCGGCTACTACCGACGGTTTGTAAAAGGTTTCTCGA
58541745 TGATAGCCACACCAATGACGAAGCTACTTCAAAAAGATGTTAAGTTCGAATGGACAGAAAAATGT
131 TGATAGCCACACCAATGACGAAGCTACTTCAAAAAGATGTTAAGTTCGAATGGACAGAAAAATGT
58541810 CAGAAAAGTTTTGATCAACTGAAAACCTATTTGACTGAAGCTCCAATTCTAGTGCAGCTCGAATC
196 CAGAAAAGTTTTGATCAACTGAAAACCTATTTGACTGAAGCTCCAATTCTAGTGCAGCTCGAATC
58541875 AGGCAAAGAGTTTGTCAGTTGA
261 AGGCAAAGAGTTTGTCAGTTGA
* * *
58541897 TCGGGTATTCGAGTGGACCCGAGCAAAGTTTCAGCCATACTTAACTGGAAGCCTCCGAGAAATAT
1 TCGGGTATTCGAGTGGACCCGAACAAAATTTCAGCCATACTTAACTGGAAACCTCCGAGAAATAT
58541962 TACTGAGGTTCGGAGCTTTTTGGGACTTGCCGGCTACTACCGACGGTTTGTAAAAGGTTTCTCGA
66 TACTGAGGTTCGGAGCTTTTTGGGACTTGCCGGCTACTACCGACGGTTTGTAAAAGGTTTCTCGA
58542027 TGATAGCCACACCAATGACGAAGCTACTTCAAAAAGATGTTAAGTTCGAATGGACAGAAAAATGT
131 TGATAGCCACACCAATGACGAAGCTACTTCAAAAAGATGTTAAGTTCGAATGGACAGAAAAATGT
58542092 CAGAAAAGTTTTGATCAACTGAAAACCTATTTGACTGAAGCTCCAATTCTAGTGCAGCTCGAATC
196 CAGAAAAGTTTTGATCAACTGAAAACCTATTTGACTGAAGCTCCAATTCTAGTGCAGCTCGAATC
58542157 AGGCAAAGAGTTTGTCAGTT
261 AGGCAAAGAGTTTGTCAGTT
58542177 ATAGTGATGC
Statistics
Matches: 275, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
282 275 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (282 bp):
TCGGGTATTCGAGTGGACCCGAACAAAATTTCAGCCATACTTAACTGGAAACCTCCGAGAAATAT
TACTGAGGTTCGGAGCTTTTTGGGACTTGCCGGCTACTACCGACGGTTTGTAAAAGGTTTCTCGA
TGATAGCCACACCAATGACGAAGCTACTTCAAAAAGATGTTAAGTTCGAATGGACAGAAAAATGT
CAGAAAAGTTTTGATCAACTGAAAACCTATTTGACTGAAGCTCCAATTCTAGTGCAGCTCGAATC
AGGCAAAGAGTTTGTCAGTTGA
Found at i:58563264 original size:54 final size:54
Alignment explanation
Indices: 58563197--58563300 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
58563187 GGTTTCCCAA
** *
58563197 GGATGATTGGCACTTCCTTATCTGCTTCAAAATCTAAGACAATGAAATCAGCAG
1 GGATGATCAGCACTTCCTTATCTGCTTCAAAATCTAAGACAATAAAATCAGCAG
* * *
58563251 GGATGATCAGCACTTCCTTGTCTGCTTGAAAATCTAAGATAATAAAATCA
1 GGATGATCAGCACTTCCTTATCTGCTTCAAAATCTAAGACAATAAAATCA
58563301 ATAGGAAAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (54 bp):
GGATGATCAGCACTTCCTTATCTGCTTCAAAATCTAAGACAATAAAATCAGCAG
Found at i:58578698 original size:15 final size:14
Alignment explanation
Indices: 58578663--58578699 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
58578653 AAGAGAGAAT
*
58578663 GATGAATGATGAGG
1 GATGAAGGATGAGG
58578677 GATGAAGGATGAGG
1 GATGAAGGATGAGG
58578691 GAATGAAGG
1 G-ATGAAGG
58578700 GGTCATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.38, C:0.00, G:0.46, T:0.16
Consensus pattern (14 bp):
GATGAAGGATGAGG
Found at i:58580812 original size:30 final size:30
Alignment explanation
Indices: 58580778--58580838 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
58580768 TATGAACCTT
58580778 AGTAAAATTCGGCTATACTAGAGTTTAATG
1 AGTAAAATTCGGCTATACTAGAGTTTAATG
58580808 AGTAAAATTCGGCTATACTAGAGTTTAATG
1 AGTAAAATTCGGCTATACTAGAGTTTAATG
58580838 A
1 A
58580839 AATTATGTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (30 bp):
AGTAAAATTCGGCTATACTAGAGTTTAATG
Found at i:58603447 original size:27 final size:26
Alignment explanation
Indices: 58603402--58603452 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
58603392 TTTTGAGTTA
*
58603402 ATAAATTCTCTTTAATTTTTCTTTTCC
1 ATAAATTCTCTTGAA-TTTTCTTTTCC
* *
58603429 ATAATTTCTCTTGAGTTTTCTTTT
1 ATAAATTCTCTTGAATTTTCTTTT
58603453 AGAAGAGTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 9 0.43
27 12 0.57
ACGTcount: A:0.20, C:0.16, G:0.04, T:0.61
Consensus pattern (26 bp):
ATAAATTCTCTTGAATTTTCTTTTCC
Found at i:58610895 original size:25 final size:26
Alignment explanation
Indices: 58610861--58610911 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
58610851 CCTTATAAAA
* *
58610861 TAAAAATGACTATTTTA-CCCCTAGG
1 TAAAAATGACCATTATACCCCCTAGG
58610886 TAAAAATGACCATTATACCCCCTAGG
1 TAAAAATGACCATTATACCCCCTAGG
58610912 GTTTAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (26 bp):
TAAAAATGACCATTATACCCCCTAGG
Found at i:58610963 original size:10 final size:10
Alignment explanation
Indices: 58610948--58611008 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
58610938 ATATTGTTAT
58610948 ACATGATATG
1 ACATGATATG
*
58610958 ACATGATCTG
1 ACATGATATG
58610968 CACATGATATG
1 -ACATGATATG
** *
58610979 TTATGAGATG
1 ACATGATATG
58610989 CACATGATATG
1 -ACATGATATG
58611000 -CTATGATAT
1 AC-ATGATAT
58611009 ACTCATTATA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
9 1 0.03
10 23 0.57
11 16 0.40
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (10 bp):
ACATGATATG
Found at i:58611004 original size:21 final size:21
Alignment explanation
Indices: 58610948--58611005 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
58610938 ATATTGTTAT
**
58610948 ACATGATATGAC-ATGATCTGC
1 ACATGATATG-CTATGAGATGC
*
58610969 ACATGATATGTTATGAGATGC
1 ACATGATATGCTATGAGATGC
58610990 ACATGATATGCTATGA
1 ACATGATATGCTATGA
58611006 TATACTCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (21 bp):
ACATGATATGCTATGAGATGC
Found at i:58622411 original size:26 final size:26
Alignment explanation
Indices: 58622375--58622428 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
58622365 TTCCTATGAG
58622375 AATGCCAAAATGTGTAAAAACAGATC
1 AATGCCAAAATGTGTAAAAACAGATC
58622401 AATGCCAAAATGTGTAAAAACAGATC
1 AATGCCAAAATGTGTAAAAACAGATC
58622427 AA
1 AA
58622429 AGAGATGGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.19
Consensus pattern (26 bp):
AATGCCAAAATGTGTAAAAACAGATC
Found at i:58625093 original size:30 final size:30
Alignment explanation
Indices: 58625057--58625117 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
58625047 TTCCCGAGCC
58625057 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
58625087 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
58625117 T
1 T
58625118 GTATTAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:58625942 original size:49 final size:50
Alignment explanation
Indices: 58625763--58625959 Score: 261
Period size: 50 Copynumber: 3.9 Consensus size: 50
58625753 AGCTATTGTG
* * *
58625763 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * * * * **
58625814 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
*
58625864 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
58625914 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
58625960 GCTTCGGCTA
Statistics
Matches: 127, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
49 43 0.34
50 46 0.36
51 38 0.30
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:58629452 original size:14 final size:14
Alignment explanation
Indices: 58629435--58629476 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
58629425 ATAAAATACA
58629435 AATTTATATTTAAT
1 AATTTATATTTAAT
58629449 AATTTAT-TTTAAT
1 AATTTATATTTAAT
58629462 ATATTT-TA-TTAAT
1 A-ATTTATATTTAAT
58629475 AA
1 AA
58629477 ATTAGGTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.04
13 14 0.54
14 11 0.42
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
AATTTATATTTAAT
Found at i:58636460 original size:44 final size:42
Alignment explanation
Indices: 58636412--58636503 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 42
58636402 CGATACCGAG
*
58636412 ATAGCTTCGGTTAA-TTGAGATGGCACTAAGTGTGCGGAATTATT
1 ATAGCTTCGGCTAACTTGA-A-GGCACTAAGTGTGC-GAATTATT
* *
58636456 ATAGCTTTGGCTAACCTTTAAGGCACTAAGTGTGCGAATTATT
1 ATAGCTTCGGCTAA-CTTGAAGGCACTAAGTGTGCGAATTATT
58636499 ATAGC
1 ATAGC
58636504 ATGAAAAATC
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
43 13 0.30
44 26 0.60
45 1 0.02
46 3 0.07
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.34
Consensus pattern (42 bp):
ATAGCTTCGGCTAACTTGAAGGCACTAAGTGTGCGAATTATT
Found at i:58643039 original size:23 final size:24
Alignment explanation
Indices: 58643004--58643062 Score: 57
Period size: 25 Copynumber: 2.5 Consensus size: 24
58642994 GCAAGAACGG
* *
58643004 ATTACCTAAAAAG-TCTGTCGCAT
1 ATTATCTAGAAAGCTCTGTCGCAT
* *
58643027 ATTATCTAGAAAGCCTTTGTGGCAT
1 ATTATCTAGAAAG-CTCTGTCGCAT
*
58643052 ACTATCTAGAA
1 ATTATCTAGAA
58643063 GGCCTTTATG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
23 11 0.38
25 18 0.62
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (24 bp):
ATTATCTAGAAAGCTCTGTCGCAT
Found at i:58643057 original size:25 final size:25
Alignment explanation
Indices: 58643023--58643075 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
58643013 AAAGTCTGTC
* *
58643023 GCATATTATCTAGAAAGCCTTTGTG
1 GCATACTATCTAGAAAGCCTTTATG
*
58643048 GCATACTATCTAGAAGGCCTTTATG
1 GCATACTATCTAGAAAGCCTTTATG
58643073 GCA
1 GCA
58643076 ATCTTATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (25 bp):
GCATACTATCTAGAAAGCCTTTATG
Found at i:58644563 original size:43 final size:43
Alignment explanation
Indices: 58644515--58644645 Score: 165
Period size: 43 Copynumber: 3.0 Consensus size: 43
58644505 CATAGGATTT
*
58644515 TTGATATGTGATTATGTGTAAGACCATGTCTGGGACGTTGGCA
1 TTGATATGTGATTACGTGTAAGACCATGTCTGGGACGTTGGCA
* * * *
58644558 TTGATATGTGATTACGTGTAAGACCCTTTCTAGGATAG-TGGCA
1 TTGATATGTGATTACGTGTAAGACCATGTCTGGGA-CGTTGGCA
* * * *
58644601 TCGATATGTGATTACATGTAAGACCACGTCAGGGACGTTGGCA
1 TTGATATGTGATTACGTGTAAGACCATGTCTGGGACGTTGGCA
58644644 TT
1 TT
58644646 ATACGATATA
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
42 1 0.01
43 70 0.97
44 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
TTGATATGTGATTACGTGTAAGACCATGTCTGGGACGTTGGCA
Found at i:58648089 original size:27 final size:26
Alignment explanation
Indices: 58648059--58648160 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 26
58648049 TGGTGACTAC
58648059 GCCACAATTATCTGATCTGGTGGCTCT
1 GCCAC-ATTATCTGATCTGGTGGCTCT
*
58648086 GCCACATATATCTGTTCTGGTGGCTCT
1 GCCACAT-TATCTGATCTGGTGGCTCT
*
58648113 GCCACGATTATCTGTATCTGGTGACTCT
1 GCCAC-ATTATCTG-ATCTGGTGGCTCT
**
58648141 GTTACATTATCT-ATTCTGGT
1 GCCACATTATCTGA-TCTGGT
58648161 AGCCATGCTG
Statistics
Matches: 66, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
25 1 0.02
26 8 0.12
27 41 0.62
28 16 0.24
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.38
Consensus pattern (26 bp):
GCCACATTATCTGATCTGGTGGCTCT
Found at i:58650135 original size:43 final size:43
Alignment explanation
Indices: 58650029--58650137 Score: 146
Period size: 43 Copynumber: 2.5 Consensus size: 43
58650019 GGATTAATGA
* *
58650029 TATGTGATTATGTGTAAGACAATCTCTGGAACATTGGCATCAT
1 TATGTGATTATGTGTAAGACCATCTCTGGAACATTAGCATCAT
** * *
58650072 TATGTGATTACATGTAAGACCATGTCTGGGACATTAGCATCAT
1 TATGTGATTATGTGTAAGACCATCTCTGGAACATTAGCATCAT
* *
58650115 TATTTGATTTTGTGTAAGACCAT
1 TATGTGATTATGTGTAAGACCAT
58650138 AGTTGGGCTA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (43 bp):
TATGTGATTATGTGTAAGACCATCTCTGGAACATTAGCATCAT
Found at i:58650945 original size:22 final size:22
Alignment explanation
Indices: 58650917--58650971 Score: 110
Period size: 22 Copynumber: 2.5 Consensus size: 22
58650907 TGAGATAAAA
58650917 TGGCATGATTTGTATATGAATT
1 TGGCATGATTTGTATATGAATT
58650939 TGGCATGATTTGTATATGAATT
1 TGGCATGATTTGTATATGAATT
58650961 TGGCATGATTT
1 TGGCATGATTT
58650972 TGTTACCTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.25, C:0.05, G:0.24, T:0.45
Consensus pattern (22 bp):
TGGCATGATTTGTATATGAATT
Found at i:58653513 original size:18 final size:18
Alignment explanation
Indices: 58653490--58653526 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
58653480 TGACAGAAAG
58653490 AAAGATTGAATCAGTACC
1 AAAGATTGAATCAGTACC
58653508 AAAGATTGAATCAGTACC
1 AAAGATTGAATCAGTACC
58653526 A
1 A
58653527 GTTGTATGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.22
Consensus pattern (18 bp):
AAAGATTGAATCAGTACC
Found at i:58657111 original size:43 final size:43
Alignment explanation
Indices: 58657001--58657104 Score: 154
Period size: 43 Copynumber: 2.4 Consensus size: 43
58656991 AATGAGATGC
*
58657001 GATTATGTGTAAGACCATGTCTGGGACATTGGCATCATTATGT
1 GATTAAGTGTAAGACCATGTCTGGGACATTGGCATCATTATGT
* * *
58657044 GATTAAGTGTAACACCATGTCTGGGACATTTGCATCATTATTT
1 GATTAAGTGTAAGACCATGTCTGGGACATTGGCATCATTATGT
**
58657087 GATTTCGTGTAAGACCAT
1 GATTAAGTGTAAGACCAT
58657105 AGCTGGGCTA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (43 bp):
GATTAAGTGTAAGACCATGTCTGGGACATTGGCATCATTATGT
Found at i:58660733 original size:26 final size:26
Alignment explanation
Indices: 58660704--58660765 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 26
58660694 TAATTTATGA
58660704 AATGACTGTTATACCCCTATGAAATG
1 AATGACTGTTATACCCCTATGAAATG
** **
58660730 AATGGA-TGAAATACCCCTATGTGATG
1 AAT-GACTGTTATACCCCTATGAAATG
*
58660756 TATGACTGTT
1 AATGACTGTT
58660766 TGAGCATGCC
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
25 2 0.07
26 23 0.85
27 2 0.07
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32
Consensus pattern (26 bp):
AATGACTGTTATACCCCTATGAAATG
Found at i:58667915 original size:13 final size:13
Alignment explanation
Indices: 58667897--58667929 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
58667887 GGTTATTTAT
58667897 TAAACTAATTAAC
1 TAAACTAATTAAC
58667910 TAAACTAATTAAC
1 TAAACTAATTAAC
58667923 T-AACTAA
1 TAAACTAA
58667930 ACTAAAGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.30
13 14 0.70
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:58677513 original size:74 final size:74
Alignment explanation
Indices: 58677392--58677835 Score: 879
Period size: 74 Copynumber: 6.0 Consensus size: 74
58677382 TTTTTCAATC
58677392 AACTTACCAACCACTTTATTATACCCTGCCGAATGCACATATTTATTTATAAACAAGTAATTGCA
1 AACTTACCAACCACTTTATTATACCCTGCCGAATGCACATATTTATTTATAAACAAGTAATTGCA
58677457 TTTTTTTTA
66 TTTTTTTTA
58677466 AACTTACCAACCACTTTATTATACCCTGCCGAATGCACATATTTATTTATAAACAAGTAATTGCA
1 AACTTACCAACCACTTTATTATACCCTGCCGAATGCACATATTTATTTATAAACAAGTAATTGCA
58677531 TTTTTTTTA
66 TTTTTTTTA
58677540 AACTTACCAACCACTTTATTATACCCTGCCGAATGCACATATTTATTTATAAACAAGTAATTGCA
1 AACTTACCAACCACTTTATTATACCCTGCCGAATGCACATATTTATTTATAAACAAGTAATTGCA
58677605 TTTTTTTTA
66 TTTTTTTTA
58677614 AACTTACCAACCACTTTATTATACCCTGCCGAATGCACATATTTATTTATAAACAAGTAATTGCA
1 AACTTACCAACCACTTTATTATACCCTGCCGAATGCACATATTTATTTATAAACAAGTAATTGCA
58677679 TTTTTTTTA
66 TTTTTTTTA
58677688 AACTTACCAACCACTTTATTATACCCTGCCGAATGCACATATTTATTTATAAACAAGTAATTGCA
1 AACTTACCAACCACTTTATTATACCCTGCCGAATGCACATATTTATTTATAAACAAGTAATTGCA
58677753 TTTTTTTTA
66 TTTTTTTTA
*
58677762 AACTTACCAACCACTTTATTATACCCTGCCGAATGCACATATTTATTTATATACAAGTAATTGCA
1 AACTTACCAACCACTTTATTATACCCTGCCGAATGCACATATTTATTTATAAACAAGTAATTGCA
58677827 TTTTTTTTA
66 TTTTTTTTA
58677836 CTTGGCTAGA
Statistics
Matches: 369, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 369 1.00
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (74 bp):
AACTTACCAACCACTTTATTATACCCTGCCGAATGCACATATTTATTTATAAACAAGTAATTGCA
TTTTTTTTA
Found at i:58681106 original size:46 final size:45
Alignment explanation
Indices: 58681053--58681320 Score: 222
Period size: 46 Copynumber: 5.8 Consensus size: 45
58681043 TATTTGGCCA
*
58681053 TCCGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *** * *
58681099 TCCGAACTCATTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCAT-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAATG
58681147 T-CG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *** * *
58681191 TCTGAACTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAGGCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAATG
* *
58681238 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
58681284 CCCGAGCTCGCTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58681321 GCGGGTTACA
Statistics
Matches: 176, Mismatches: 31, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
42 1 0.01
43 5 0.03
44 5 0.03
45 6 0.03
46 111 0.63
47 36 0.20
48 3 0.02
49 7 0.04
50 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:58681219 original size:92 final size:92
Alignment explanation
Indices: 58681051--58681312 Score: 416
Period size: 92 Copynumber: 2.8 Consensus size: 92
58681041 GATATTTGGC
* *
58681051 CATCCGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGTT
1 CATCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
*
58681116 GAGTCCGAGTTCGAGAGATGTAACTAGG
65 GAGTCCAAGTTCGAGAGATGTAACTAGG
* * *
58681144 CATTCGACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCTGAACTCGTTGAGTTG
1 CATCCGACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
58681209 AGTCCAAGTTCGAGAGATGTAACTAGG
66 AGTCCAAGTTCGAGAGATGTAACTAGG
* * * *
58681236 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGCTGAGTT
1 CATCCGA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
58681301 GAGTCCAAGTTC
65 GAGTCCAAGTTC
58681313 ACTTATGGGC
Statistics
Matches: 155, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
92 87 0.56
93 68 0.44
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (92 bp):
CATCCGACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
AGTCCAAGTTCGAGAGATGTAACTAGG
Found at i:58686716 original size:46 final size:45
Alignment explanation
Indices: 58686663--58686931 Score: 249
Period size: 46 Copynumber: 5.8 Consensus size: 45
58686653 TATTTGGGCA
58686663 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
58686709 TCCGAACTCGTTGAGTGGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
58686756 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
58686802 TCCGAACTCGTTGAGTGGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
58686849 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
58686895 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58686932 GCGGGTTACA
Statistics
Matches: 177, Mismatches: 32, Indels: 28
0.75 0.14 0.12
Matches are distributed among these distances:
43 2 0.01
44 6 0.03
45 2 0.01
46 97 0.55
47 60 0.34
48 2 0.01
49 6 0.03
50 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:58686777 original size:47 final size:47
Alignment explanation
Indices: 58686709--58686877 Score: 184
Period size: 47 Copynumber: 3.6 Consensus size: 47
58686699 GATGCGAATG
*
58686709 TCCGAACTCGTTGAGTGGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCATTGAGTGGAGTCCGAGTTCGAGAGATGTAACTAGGCA
* * *** * *
58686756 TCCGAGCTCATTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAA
1 TCCGAACTCATTGAGTGGAGTCCGAGTTCGAGAGATGTAACTAG-GCA
*
58686800 TGTCCGAACTCGTTGAGTGGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 --TCCGAACTCATTGAGTGGAGTCCGAGTTCGAGAGATGTAACTAGGCA
* *
58686849 TCCGAGCTCATTGAGTTGAGTCCGAGTTC
1 TCCGAACTCATTGAGTGGAGTCCGAGTTC
58686878 ACTTATGGAT
Statistics
Matches: 96, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 30 0.31
47 56 0.58
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (47 bp):
TCCGAACTCATTGAGTGGAGTCCGAGTTCGAGAGATGTAACTAGGCA
Found at i:58686818 original size:93 final size:93
Alignment explanation
Indices: 58686659--58686923 Score: 476
Period size: 93 Copynumber: 2.8 Consensus size: 93
58686649 AGGATATTTG
* *
58686659 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
58686724 TGGAGTCCGAGTTCGAGAGATGTAACTA
66 TGGAGTCCGAGTTCGAGAGATGTAACTA
58686752 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
58686817 TGGAGTCCGAGTTCGAGAGATGTAACTA
66 TGGAGTCCGAGTTCGAGAGATGTAACTA
* * *
58686845 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
*
58686910 TTGAGTCCGAGTTC
66 TGGAGTCCGAGTTC
58686924 ACTTATGGGC
Statistics
Matches: 166, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 166 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TGGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:58701208 original size:42 final size:42
Alignment explanation
Indices: 58701149--58701234 Score: 138
Period size: 42 Copynumber: 2.0 Consensus size: 42
58701139 ACCTCTCCGG
58701149 TGAATGGTCAATGTGGTTCGAAGAGTTTATACTCCTCATTCC
1 TGAATGGTCAATGTGGTTCGAAGAGTTTATACTCCTCATTCC
* *
58701191 TGAATGGTC-ATGGTGGTTTGAGGAGTTTATACTCCTCATTCC
1 TGAATGGTCAAT-GTGGTTCGAAGAGTTTATACTCCTCATTCC
58701233 TG
1 TG
58701235 CTATCAATCT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
41 2 0.05
42 39 0.95
ACGTcount: A:0.21, C:0.17, G:0.24, T:0.37
Consensus pattern (42 bp):
TGAATGGTCAATGTGGTTCGAAGAGTTTATACTCCTCATTCC
Found at i:58705092 original size:13 final size:13
Alignment explanation
Indices: 58705074--58705098 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58705064 GAAAAAGGGA
58705074 CACGGCCGTGTGC
1 CACGGCCGTGTGC
58705087 CACGGCCGTGTG
1 CACGGCCGTGTG
58705099 ACATGATTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.36, G:0.40, T:0.16
Consensus pattern (13 bp):
CACGGCCGTGTGC
Found at i:58721418 original size:47 final size:47
Alignment explanation
Indices: 58721323--58721429 Score: 135
Period size: 47 Copynumber: 2.3 Consensus size: 47
58721313 GTGTGAGTGA
* * * *
58721323 TACCTTGATTTGGCTATGGGCCATGGTATAGGTATTCAGAGAGGAGT
1 TACCTTGATTTGGCTATAGGCCATGGTATAGATATCCAGAGAGAAGT
*
58721370 TACCTTGATTTGGCTATAGGCCATGGTATAGATACTCCA-AGATAAGT
1 TACCTTGATTTGGCTATAGGCCATGGTATAGATA-TCCAGAGAGAAGT
**
58721417 TATATTGATTTGG
1 TACCTTGATTTGG
58721430 TCGCGGGCCA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
47 49 0.94
48 3 0.06
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (47 bp):
TACCTTGATTTGGCTATAGGCCATGGTATAGATATCCAGAGAGAAGT
Found at i:58729071 original size:47 final size:47
Alignment explanation
Indices: 58729020--58729117 Score: 160
Period size: 47 Copynumber: 2.1 Consensus size: 47
58729010 TTTAGGATTA
* *
58729020 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCC
* *
58729067 AATGTGATGAATGTGAACATGCATATATGTGGTAAAGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCC
58729114 AATG
1 AATG
58729118 CGAAACGTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAAGCCGAATGGCC
Found at i:58729156 original size:36 final size:36
Alignment explanation
Indices: 58729109--58729181 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
58729099 TAAAGCCGAA
58729109 TGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
1 TGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
58729145 TGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
1 TGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
58729181 T
1 T
58729182 AAAGCCGAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.30, C:0.08, G:0.36, T:0.26
Consensus pattern (36 bp):
TGGCTAATGCGAAACGTGTATGAGATGGATATGAGG
Found at i:58729197 original size:46 final size:46
Alignment explanation
Indices: 58729145--58729263 Score: 175
Period size: 46 Copynumber: 2.6 Consensus size: 46
58729135 GGATATGAGG
* *
58729145 TGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGCCGAA
1 TGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAACCAAA
*
58729191 TGGCTAATGCGAAACGTGTATGAGATGGATATGTGGTAAAACCAAA
1 TGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAACCAAA
* * **
58729237 TGGCTAATGTGAGATATGTATGAGATG
1 TGGCTAATGCGAAACGTGTATGAGATG
58729264 TGTATATATG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 66 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
TGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAACCAAA
Found at i:58731633 original size:22 final size:22
Alignment explanation
Indices: 58731601--58731652 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
58731591 GGGTAGGAAA
* * *
58731601 CTGCATTTGTATTTGATTTGTT
1 CTGCATCTGTATCTGATATGTT
*
58731623 TTGCATCTGTATCTGATATGTT
1 CTGCATCTGTATCTGATATGTT
58731645 CTGCATCT
1 CTGCATCT
58731653 TATATGAACT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.15, C:0.15, G:0.17, T:0.52
Consensus pattern (22 bp):
CTGCATCTGTATCTGATATGTT
Found at i:58734709 original size:18 final size:19
Alignment explanation
Indices: 58734686--58734723 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
58734676 TATAATTTTT
58734686 TTAATATTTTGAT-AATTA
1 TTAATATTTTGATAAATTA
58734704 TTAATATTTTGATAAATTA
1 TTAATATTTTGATAAATTA
58734723 T
1 T
58734724 AATTTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
TTAATATTTTGATAAATTA
Found at i:58737267 original size:68 final size:67
Alignment explanation
Indices: 58737195--58737344 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
58737185 CATCATGTGT
* * * *
58737195 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
58737257 ATGTAG
62 ATGTAG
** * *
58737263 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
58737328 AG
66 AG
58737330 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
58737345 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:58737300 original size:64 final size:64
Alignment explanation
Indices: 58737219--58737402 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
58737209 AGACATTATG
* *
58737219 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
58737283 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
58737348 AA
63 AA
* * * *
58737350 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
58737403 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:58740700 original size:25 final size:25
Alignment explanation
Indices: 58740672--58740724 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
58740662 TTTGTTATGT
*
58740672 TATGCCATGATCTAATTTGATATTA
1 TATGCCATGATCTAATTTGATATAA
* * * *
58740697 TATGCTATGGTTTGATTTGATATAA
1 TATGCCATGATCTAATTTGATATAA
58740722 TAT
1 TAT
58740725 ACTACGATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.47
Consensus pattern (25 bp):
TATGCCATGATCTAATTTGATATAA
Found at i:58740735 original size:25 final size:25
Alignment explanation
Indices: 58740686--58740736 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
58740676 CCATGATCTA
* * * *
58740686 ATTTGATATTATATGCTATGGTTTG
1 ATTTGATATAATATACTACGATTTG
58740711 ATTTGATATAATATACTACGATTTG
1 ATTTGATATAATATACTACGATTTG
58740736 A
1 A
58740737 CATAACATGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.06, G:0.16, T:0.47
Consensus pattern (25 bp):
ATTTGATATAATATACTACGATTTG
Found at i:58751745 original size:40 final size:40
Alignment explanation
Indices: 58751651--58751875 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
58751641 TATTCGAATG
*
58751651 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
58751692 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
58751732 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
58751772 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
58751812 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
58751852 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
58751876 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 127 0.80
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:58751831 original size:80 final size:80
Alignment explanation
Indices: 58751651--58751911 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
58751641 TATTCGAATG
* * * *
58751651 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
58751716 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
58751732 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
58751797 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
58751812 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
58751877 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
58751891 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
58751912 ATTTCTTGAG
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 95 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:58751865 original size:120 final size:120
Alignment explanation
Indices: 58751651--58751911 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
58751641 TATTCGAATG
* * *
58751651 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
58751716 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
58751772 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
58751835 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
58751891 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
58751912 ATTTCTTGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 57 0.47
121 31 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:58755165 original size:24 final size:24
Alignment explanation
Indices: 58755120--58755165 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
58755110 AACTTATGCT
*
58755120 TTTAGATAAATTATAGATTATAGA
1 TTTAGATAAATTATACATTATAGA
*
58755144 TTTAGATATA-TATACATGTATA
1 TTTAGATAAATTATACAT-TATA
58755166 TTAGAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.43
Consensus pattern (24 bp):
TTTAGATAAATTATACATTATAGA
Found at i:58757556 original size:40 final size:40
Alignment explanation
Indices: 58757512--58757593 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
58757502 CCCAAGCTTG
*
58757512 TCTTTCCCTTGACCAAGCTTGACCACAGATTCCACTACCT
1 TCTTTCCCTAGACCAAGCTTGACCACAGATTCCACTACCT
58757552 TCTTTCCCTAGACCAAGCTTGACCACAGATTCCACTACCT
1 TCTTTCCCTAGACCAAGCTTGACCACAGATTCCACTACCT
58757592 TC
1 TC
58757594 ATGGCTTCCG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.23, C:0.38, G:0.10, T:0.29
Consensus pattern (40 bp):
TCTTTCCCTAGACCAAGCTTGACCACAGATTCCACTACCT
Found at i:58761242 original size:17 final size:17
Alignment explanation
Indices: 58761216--58761256 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
58761206 AGATCATCAA
*
58761216 AAGCTTGATTTGGTTGG
1 AAGCTCGATTTGGTTGG
58761233 AAGCTCGATTTGGTTGG
1 AAGCTCGATTTGGTTGG
58761250 AAGCTCG
1 AAGCTCG
58761257 TCAAAGACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.20, C:0.12, G:0.34, T:0.34
Consensus pattern (17 bp):
AAGCTCGATTTGGTTGG
Found at i:58768706 original size:21 final size:21
Alignment explanation
Indices: 58768681--58768725 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
58768671 GAGAGAAAAT
58768681 CGGCAGGAAGGGTTTAAGAAA
1 CGGCAGGAAGGGTTTAAGAAA
58768702 CGGCAGGAAGGGTTTAAGAAA
1 CGGCAGGAAGGGTTTAAGAAA
58768723 CGG
1 CGG
58768726 ACCCAAGCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.11, G:0.40, T:0.13
Consensus pattern (21 bp):
CGGCAGGAAGGGTTTAAGAAA
Found at i:58770383 original size:17 final size:17
Alignment explanation
Indices: 58770361--58770395 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
58770351 TTAGAAGTAG
58770361 TTTTCTTGTAGCCATGT
1 TTTTCTTGTAGCCATGT
58770378 TTTTCTTGTAGCCATGT
1 TTTTCTTGTAGCCATGT
58770395 T
1 T
58770396 CCCCATAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.17, G:0.17, T:0.54
Consensus pattern (17 bp):
TTTTCTTGTAGCCATGT
Found at i:58773631 original size:42 final size:42
Alignment explanation
Indices: 58773568--58773682 Score: 126
Period size: 42 Copynumber: 2.8 Consensus size: 42
58773558 TGACATTATG
*
58773568 GTTATGAG-TTTACGTGTAAGACCATATTTGGGATATGACATC
1 GTTATGAGATTT-CGTGTAAGACCATATTTGGGACATGACATC
* * * *
58773610 GTTATGAGATTTCGTGCAAGACCATGTCTGGGACATGGCATC
1 GTTATGAGATTTCGTGTAAGACCATATTTGGGACATGACATC
* * * *
58773652 GATATGAGA-ATCGTGTAAGATCATAGTTGGG
1 GTTATGAGATTTCGTGTAAGACCATATTTGGG
58773683 CTATTGGCAT
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
41 16 0.27
42 41 0.68
43 3 0.05
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (42 bp):
GTTATGAGATTTCGTGTAAGACCATATTTGGGACATGACATC
Found at i:58773691 original size:42 final size:42
Alignment explanation
Indices: 58773580--58773719 Score: 115
Period size: 42 Copynumber: 3.3 Consensus size: 42
58773570 TATGAGTTTA
* * * * *
58773580 CGTGTAAGACCATATTTGGGATATGACATCGTTATGAGATTT
1 CGTGTAAGACCATAGTTGGGCTATGGCATCGATATGAGATAT
*
58773622 CGTGCAAGACCAT-GTCTGGGAC-ATGGCATCGATATGAGA-AT
1 CGTGTAAGACCATAGT-TGGG-CTATGGCATCGATATGAGATAT
* * * ***
58773663 CGTGTAAGATCATAGTTGGGCTATTGGCATAGGTATGAGGCCT
1 CGTGTAAGACCATAGTTGGGCTA-TGGCATCGATATGAGATAT
*
58773706 CATGTAAGACCATA
1 CGTGTAAGACCATA
58773720 TCGGGGATAT
Statistics
Matches: 78, Mismatches: 14, Indels: 11
0.76 0.14 0.11
Matches are distributed among these distances:
40 1 0.01
41 18 0.23
42 46 0.59
43 13 0.17
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATAGTTGGGCTATGGCATCGATATGAGATAT
Found at i:58775346 original size:46 final size:45
Alignment explanation
Indices: 58775290--58775458 Score: 135
Period size: 46 Copynumber: 3.6 Consensus size: 45
58775280 ATCTCGTAGT
* * *
58775290 CGATGCATGTCCCAGAGATGTCTTACACTGGCTTACGTCTCGAGGC
1 CGATACATGTCCCAGACATGTCTTACACTGGCTT-CGTCTCAAGGC
* * * * *
58775336 CGATACATGTCCCAAACATGTCTTACATTAGCACTCGTCTCAATGC
1 CGATACATGTCCCAGACATGTCTTACACTGGC-TTCGTCTCAAGGC
* * *
58775382 CGATGCCATGTCCCAGACATGGTCCTACACTGGC-TC-TCATAATATGGC
1 CGAT-ACATGTCCCAGACAT-GTCTTACACTGGCTTCGTC-TCA-A-GGC
** *
58775430 CGATGTATGTCCCAGACATGTTTTACACT
1 CGATACATGTCCCAGACATGTCTTACACT
58775459 AGCTCACAAT
Statistics
Matches: 98, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
45 2 0.02
46 52 0.53
47 28 0.29
48 16 0.16
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
CGATACATGTCCCAGACATGTCTTACACTGGCTTCGTCTCAAGGC
Found at i:58789775 original size:19 final size:19
Alignment explanation
Indices: 58789751--58789791 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
58789741 TTAAATTGTT
*
58789751 TTATAATACGAAATGAATA
1 TTATAATACGAAAGGAATA
**
58789770 TTATAATATTAAAGGAATA
1 TTATAATACGAAAGGAATA
58789789 TTA
1 TTA
58789792 ATATTATAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (19 bp):
TTATAATACGAAAGGAATA
Found at i:58791837 original size:39 final size:39
Alignment explanation
Indices: 58791783--58791878 Score: 149
Period size: 39 Copynumber: 2.5 Consensus size: 39
58791773 TTATATGATT
58791783 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCAT-TCGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATCT-GTGC
*
58791822 TGGTGTTATATCCGGGCTGAGCCCCGAAGGCATCTGTGC
1 TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATCTGTGC
* *
58791861 TGGTATTATATTCGGGCT
1 TGGTGTTATATCCGGGCT
58791879 TAAAGTCCCG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
39 52 0.98
40 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.31, T:0.29
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGCCCCGAAGGCATCTGTGC
Found at i:58793820 original size:616 final size:616
Alignment explanation
Indices: 58792265--58794122 Score: 3392
Period size: 616 Copynumber: 3.0 Consensus size: 616
58792255 TTAGAAGCTG
*
58792265 AATAAATAATGTCATGAAATCTTAATGAGTCTAGTTTCTTATAAAAGAAACCGTGTGAGCAAAAG
1 AATAAATCATGTCATGAAATCTTAATGAGTCTAGTTTCTTATAAAAGAAACCGTGTGAGCAAAAG
* * *
58792330 AATTACCAATAATGAGATATTTGAAGTGGCGTGGAATAGAGTCAAAATGACTTCGAGGTCCCCTG
66 AATTGCCAATAATGAGATATTTGAAGTGGCGTGGAATGGAGTCAAAATGACTTCGAGATCCCCTG
*
58792395 TTCTGTTTTCAGAAAATCATTATAAATGGTACAAAAATGGTTATAAGATAAAATTTATATCCTTA
131 TTCTGTTTTCAGAAAATCATTATAAATGGTTCAAAAATGGTTATAAGATAAAATTTATATCCTTA
* * * *
58792460 GACTCCTTAATGAGTCTAGTTTCAAATGAAACAAACAATAACATATTTTGAATTATGTATAATGA
196 TACTCCTTAATGAGTCTAGTTTCAAATGAAATAAACGATAACATATTTCGAATTATGTATAATGA
* * * *
58792525 GAAAATTGATTCATAGTGAAGAGTGGTCAGAATAGTCAGACAGTGAAACAAGGGAAACTTCAATA
261 GAAAATTGATTCGTAGTGAAGAGTGGACAGAATAGTCAAACAGTGAAACAGGGGAAACTTCAATA
* * *
58792590 AAAAGATGGTATTGATTGGTAAAACAAAAAATTCTGAAAATTTGATGGATGGAATATATATGAGT
326 AAAATATGGTATTGATTGGTCAAACCAAAAATTCTGAAAATTTGATGGATGGAATATATATGAGT
* * * * *
58792655 ATAATTTCAGAGAAAATTAATGGAACTTGATTTGGAGTTTCTTATCTCCAGTTATAAATAATTTA
391 CTAATTTCAGGGACAATTAACGGCACTTGATTTGGAGTTTCTTATCTCCAGTTATAAATAATTTA
58792720 GTGACTGTTGCTCAGGAAGACAACTTGTAGTGAATTTGTGATTTTGTTGCAAACATGGTTAAAAC
456 GTGACTGTTGCTCAGGAAGACAACTTGTAGTGAATTTGTGATTTTGTTGCAAACATGGTTAAAAC
58792785 TTGTTAATGAGATGCTTTTCGAGTTCTTATGATCTTATTTGTGATTTCAATATTTGGTTTTAATT
521 TTGTTAATGAGATGCTTTTCGAGTTCTTATGATCTTATTTGTGATTTCAATATTTGGTTTTAATT
58792850 GAGTTCATATTCAAGTGAGGTTAATTTGCTA
586 GAGTTCATATTCAAGTGAGGTTAATTTGCTA
58792881 AATAAATCATGTCATGAAATAGAAATCTTAATGAGTCTAGTTTCTTATAAAAGAAACCGTGTGAG
1 AATAAATCATGTC-----AT-GAAATCTTAATGAGTCTAGTTTCTTATAAAAGAAACCGTGTGAG
58792946 CAAAAGAATTGCCAATAATGAGATATTTGAAGTGGCGTGGAATGGAGTCAAAATGACTTCGAGAT
60 CAAAAGAATTGCCAATAATGAGATATTTGAAGTGGCGTGGAATGGAGTCAAAATGACTTCGAGAT
58793011 CCCCTGTTCTGTTTTCAGAAAATCATTATAAATGGTTCAAAAATGGTTATAAGATAAAATTTATA
125 CCCCTGTTCTGTTTTCAGAAAATCATTATAAATGGTTCAAAAATGGTTATAAGATAAAATTTATA
*
58793076 TCCTTATACTCCTTAATGAGTCTAGTTTCAAATGTAATAAACGATAACATATTTCGAATTATGTA
190 TCCTTATACTCCTTAATGAGTCTAGTTTCAAATGAAATAAACGATAACATATTTCGAATTATGTA
58793141 TAATGAGAAAATTGATTCGTAGTGAAGAGTGGACAGAATAGTCAAACAGTGAAACAGGGGAAACT
255 TAATGAGAAAATTGATTCGTAGTGAAGAGTGGACAGAATAGTCAAACAGTGAAACAGGGGAAACT
58793206 TCAATAAAAATATGGTATTGATTGGTCAAACCAAAAATTCTGAAAATTTGATGGATGGAATATAT
320 TCAATAAAAATATGGTATTGATTGGTCAAACCAAAAATTCTGAAAATTTGATGGATGGAATATAT
58793271 ATGAGTCTAATTTCAGGGACAATTAACGGCACTTGATTTGGAGTTTCTTATCTCCAGTTATAAAT
385 ATGAGTCTAATTTCAGGGACAATTAACGGCACTTGATTTGGAGTTTCTTATCTCCAGTTATAAAT
58793336 AATTTAGTGACTGTTGCTCAGGAAGACAACTTGTAGTGAATTTGTGATTTTGTTGCAAACATGGT
450 AATTTAGTGACTGTTGCTCAGGAAGACAACTTGTAGTGAATTTGTGATTTTGTTGCAAACATGGT
*
58793401 TAAAACTTGTTAATGAGATGCTTTTTGAGTTCTTATGATCTTATTTGTGATTTCAATATTTGGTT
515 TAAAACTTGTTAATGAGATGCTTTTCGAGTTCTTATGATCTTATTTGTGATTTCAATATTTGGTT
*
58793466 TTAATTGAGTTCATATTCAAGTGAGGTTAATTTGCTG
580 TTAATTGAGTTCATATTCAAGTGAGGTTAATTTGCTA
58793503 AATAAATCATGTCATGAAATCTTAATGAGTCTAGTTTCTTATAAAAGAAACCGTGTGAGCAAAAG
1 AATAAATCATGTCATGAAATCTTAATGAGTCTAGTTTCTTATAAAAGAAACCGTGTGAGCAAAAG
58793568 AATTGCCAATAATGAGATATTTGAAGTGGCGTGGAATGGAGTCAAAATGACTTCGAGATCCCCTG
66 AATTGCCAATAATGAGATATTTGAAGTGGCGTGGAATGGAGTCAAAATGACTTCGAGATCCCCTG
*
58793633 TTCTGTTTTCAGAAAATCATTATAAATGATTCAAAAATGGTTATAAGATAAAATTTATATCCTTA
131 TTCTGTTTTCAGAAAATCATTATAAATGGTTCAAAAATGGTTATAAGATAAAATTTATATCCTTA
58793698 TACTCCTTAATGAGTCTAGTTTCAAATGAAATAAACGATAACATATTTCGAATTATGTATAATGA
196 TACTCCTTAATGAGTCTAGTTTCAAATGAAATAAACGATAACATATTTCGAATTATGTATAATGA
58793763 GAAAATTGATTCGTAGTGAAGAGTGGACAGAATAGTCAAACAGTGAAACAGGGGAAACTTCAATA
261 GAAAATTGATTCGTAGTGAAGAGTGGACAGAATAGTCAAACAGTGAAACAGGGGAAACTTCAATA
*
58793828 AAAATCTGGTATTGATTGGTCAAACCAAAAATTCTGAAAATTTGATGGATGGAATATATATGAGT
326 AAAATATGGTATTGATTGGTCAAACCAAAAATTCTGAAAATTTGATGGATGGAATATATATGAGT
58793893 CTAATTTCAGGGACAATTAACGGCACTTGATTTGGAGTTTCTTATCTCCAGTTATAAATAATTTA
391 CTAATTTCAGGGACAATTAACGGCACTTGATTTGGAGTTTCTTATCTCCAGTTATAAATAATTTA
* *
58793958 GTGACTGTTGCTTAGGAAGACAGCTTGTAGTGAATTTGTGATTTTGTTGCAAACATGGTTAAAAC
456 GTGACTGTTGCTCAGGAAGACAACTTGTAGTGAATTTGTGATTTTGTTGCAAACATGGTTAAAAC
58794023 TTGTTAATGAGATGCTTTTCGAGTTCTTATGATCTTATTTGTGATTTCAATATTTGGTTTTAATT
521 TTGTTAATGAGATGCTTTTCGAGTTCTTATGATCTTATTTGTGATTTCAATATTTGGTTTTAATT
* *
58794088 GAGTTCAGATTCAAGTGAGGTGAATTTGCTA
586 GAGTTCATATTCAAGTGAGGTTAATTTGCTA
58794119 AATA
1 AATA
58794123 TGCATTATGT
Statistics
Matches: 1203, Mismatches: 33, Indels: 12
0.96 0.03 0.01
Matches are distributed among these distances:
616 608 0.51
617 2 0.00
621 2 0.00
622 591 0.49
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (616 bp):
AATAAATCATGTCATGAAATCTTAATGAGTCTAGTTTCTTATAAAAGAAACCGTGTGAGCAAAAG
AATTGCCAATAATGAGATATTTGAAGTGGCGTGGAATGGAGTCAAAATGACTTCGAGATCCCCTG
TTCTGTTTTCAGAAAATCATTATAAATGGTTCAAAAATGGTTATAAGATAAAATTTATATCCTTA
TACTCCTTAATGAGTCTAGTTTCAAATGAAATAAACGATAACATATTTCGAATTATGTATAATGA
GAAAATTGATTCGTAGTGAAGAGTGGACAGAATAGTCAAACAGTGAAACAGGGGAAACTTCAATA
AAAATATGGTATTGATTGGTCAAACCAAAAATTCTGAAAATTTGATGGATGGAATATATATGAGT
CTAATTTCAGGGACAATTAACGGCACTTGATTTGGAGTTTCTTATCTCCAGTTATAAATAATTTA
GTGACTGTTGCTCAGGAAGACAACTTGTAGTGAATTTGTGATTTTGTTGCAAACATGGTTAAAAC
TTGTTAATGAGATGCTTTTCGAGTTCTTATGATCTTATTTGTGATTTCAATATTTGGTTTTAATT
GAGTTCATATTCAAGTGAGGTTAATTTGCTA
Found at i:58797166 original size:25 final size:25
Alignment explanation
Indices: 58797132--58797180 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
58797122 TCTCAAGCAG
*
58797132 TATCGGGCATGTGATTATTTCATAT
1 TATCAGGCATGTGATTATTTCATAT
58797157 TATCAGGCATGTGATTATTTCATA
1 TATCAGGCATGTGATTATTTCATA
58797181 CATCCACAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.43
Consensus pattern (25 bp):
TATCAGGCATGTGATTATTTCATAT
Found at i:58802240 original size:80 final size:80
Alignment explanation
Indices: 58802114--58803097 Score: 1772
Period size: 80 Copynumber: 12.3 Consensus size: 80
58802104 GAGTTACTAA
* * * * * * * *
58802114 ATCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGAGCA
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TGTATCCGGGCTAAGTCTCGAAGAGCA
58802178 TTCATGCTAGTGATGT
65 TTCATGCTAGTGATGT
58802194 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
58802259 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
58802274 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
58802339 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
58802354 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
58802419 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
58802434 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
58802499 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
58802514 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
58802579 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
58802594 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
58802659 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
58802674 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
58802739 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
58802754 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
58802819 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
58802834 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
58802899 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
58802914 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
58802979 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
* * ** *
58802994 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCAT
1 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
* * * **
58803059 TCGTGCTGGTGTTAC
66 TCATGCTAGTGATGT
* *
58803074 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTTCCGAAGAGCA
58803098 ATCATGCTGG
Statistics
Matches: 883, Mismatches: 20, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
80 870 0.99
81 13 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCAT
TCATGCTAGTGATGT
Found at i:58803094 original size:40 final size:40
Alignment explanation
Indices: 58801995--58803097 Score: 1554
Period size: 40 Copynumber: 27.6 Consensus size: 40
58801985 TCAAATGATG
* **
58801995 TCCGGGCTAAGTCCCGAAGAGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TGTA
* * * * *
58802036 TCCGGACTAAGAT-CCGAAG-GCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TGTA
* * * **
58802075 TTCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TGTA
* * * * *
58802115 TCCGGGTTAAGTCCCGAAG-GCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TGTA
* *
58802155 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
58802195 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
58802235 TCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
58802275 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
58802315 TCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
58802355 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
58802395 TCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
58802435 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
58802475 TCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
58802515 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
58802555 TCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
58802595 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
58802635 TCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
58802675 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
58802715 TCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
58802755 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
58802795 TCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
58802835 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
58802875 TCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
58802915 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
58802955 TCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
58802995 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * **
58803035 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTACA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
58803075 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
58803098 ATCATGCTGG
Statistics
Matches: 963, Mismatches: 92, Indels: 15
0.90 0.09 0.01
Matches are distributed among these distances:
39 34 0.04
40 893 0.93
41 35 0.04
42 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:58809284 original size:21 final size:22
Alignment explanation
Indices: 58809260--58809307 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
58809250 TTTCTTTTTA
*
58809260 GTTTTATTTTTGTTTTTA-GTT
1 GTTTTATTTTTATTTTTAGGTT
58809281 GTTTTATTTTTATTTTTATGGTT
1 GTTTTATTTTTATTTTTA-GGTT
58809304 GTTT
1 GTTT
58809308 CTAATTGAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 17 0.71
23 7 0.29
ACGTcount: A:0.10, C:0.00, G:0.15, T:0.75
Consensus pattern (22 bp):
GTTTTATTTTTATTTTTAGGTT
Found at i:58809306 original size:33 final size:33
Alignment explanation
Indices: 58809241--58809307 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
58809231 GATCATTGAG
* * **
58809241 TTTATTTGTTTTCTTTTTAGTTTTATTTTTGTT
1 TTTAGTTGTTTTATTTTTAGTTTTATGGTTGTT
*
58809274 TTTAGTTGTTTTATTTTTATTTTTATGGTTGTT
1 TTTAGTTGTTTTATTTTTAGTTTTATGGTTGTT
58809307 T
1 T
58809308 CTAATTGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.10, C:0.01, G:0.12, T:0.76
Consensus pattern (33 bp):
TTTAGTTGTTTTATTTTTAGTTTTATGGTTGTT
Found at i:58812188 original size:23 final size:22
Alignment explanation
Indices: 58812144--58812233 Score: 99
Period size: 23 Copynumber: 4.0 Consensus size: 22
58812134 TATGCTATCA
*
58812144 ATTTGGTTGTGTTAGAGGGTAT
1 ATTTGGTTGTGTTGGAGGGTAT
*
58812166 ATTTGGTTATGCTTGGAGGGTAT
1 ATTTGGTTGTG-TTGGAGGGTAT
* * *
58812189 GTTTGGTTGTGTTTGGAAGGTAC
1 ATTTGGTTGTG-TTGGAGGGTAT
*
58812212 ATTTGGTTGTGTTCGAAGGGTA
1 ATTTGGTTGTGTT-GGAGGGTA
58812234 CCTATGGTTG
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
22 12 0.21
23 44 0.79
ACGTcount: A:0.17, C:0.03, G:0.37, T:0.43
Consensus pattern (22 bp):
ATTTGGTTGTGTTGGAGGGTAT
Found at i:58812195 original size:45 final size:44
Alignment explanation
Indices: 58812145--58812269 Score: 117
Period size: 46 Copynumber: 2.8 Consensus size: 44
58812135 ATGCTATCAA
* **
58812145 TTTGGTTGTGTTAGAGGGTATATTTGGTTATGCTT-GGAGGGTATG
1 TTTGGTTGTGTTAGAGGGTA-ATTTGGTTATG-TTCGAAGGGTACC
* * *
58812190 TTTGGTTGTGTTTGGAAGGTACATTTGGTTGTGTTCGAAGGGTACC
1 TTTGGTTGTG-TTAGAGGGTA-ATTTGGTTATGTTCGAAGGGTACC
* * *
58812236 TATGGTTGTATTTAGAGGGTAACTTGGTTATGTT
1 TTTGGTTGT-GTTAGAGGGTAATTTGGTTATGTT
58812270 TGTTGGGTGA
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
45 23 0.36
46 41 0.64
ACGTcount: A:0.17, C:0.05, G:0.34, T:0.44
Consensus pattern (44 bp):
TTTGGTTGTGTTAGAGGGTAATTTGGTTATGTTCGAAGGGTACC
Found at i:58812234 original size:23 final size:23
Alignment explanation
Indices: 58812144--58812244 Score: 75
Period size: 23 Copynumber: 4.4 Consensus size: 23
58812134 TATGCTATCA
*
58812144 ATTTGGTTGTG-TT-AGAGGGTAT
1 ATTTGGTTGTGCTTGA-AGGGTAC
* * *
58812166 ATTTGGTTATGCTTGGAGGGTAT
1 ATTTGGTTGTGCTTGAAGGGTAC
* *
58812189 GTTTGGTTGTGTTTGGAA-GGTAC
1 ATTTGGTTGTGCTT-GAAGGGTAC
58812212 ATTTGGTTGTG-TTCGAAGGGTAC
1 ATTTGGTTGTGCTT-GAAGGGTAC
* *
58812235 CTATGGTTGT
1 ATTTGGTTGT
58812245 ATTTAGAGGG
Statistics
Matches: 64, Mismatches: 11, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
22 15 0.23
23 47 0.73
24 2 0.03
ACGTcount: A:0.16, C:0.05, G:0.36, T:0.44
Consensus pattern (23 bp):
ATTTGGTTGTGCTTGAAGGGTAC
Found at i:58813991 original size:4 final size:4
Alignment explanation
Indices: 58813982--58814006 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
58813972 TAAAGGAAAG
58813982 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
58814007 AACCATATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:58814352 original size:23 final size:21
Alignment explanation
Indices: 58814306--58814364 Score: 57
Period size: 23 Copynumber: 2.8 Consensus size: 21
58814296 ATTAATTTAG
*
58814306 TAATATAATAA-CAAAACAAA
1 TAATATAATAATAAAAACAAA
*
58814326 TAATATAATAATAATAAACTAAT
1 TAATATAATAATAA-AAAC-AAA
* *
58814349 TAATTTGATAATAAAA
1 TAATATAATAATAAAA
58814365 TAATCAAGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 11 0.34
21 1 0.03
22 6 0.19
23 14 0.44
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (21 bp):
TAATATAATAATAAAAACAAA
Found at i:58815655 original size:11 final size:11
Alignment explanation
Indices: 58815621--58815656 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
58815611 GATTGTTTAA
58815621 TTTA-TTTGGT
1 TTTATTTTGGT
58815631 TTTATTTTGTGT
1 TTTATTTTG-GT
58815643 TTTATTTTGGT
1 TTTATTTTGGT
58815654 TTT
1 TTT
58815657 GGTATGGGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 4 0.17
11 9 0.38
12 11 0.46
ACGTcount: A:0.08, C:0.00, G:0.17, T:0.75
Consensus pattern (11 bp):
TTTATTTTGGT
Found at i:58817002 original size:30 final size:30
Alignment explanation
Indices: 58816963--58817021 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
58816953 AACTTGGGTC
58816963 ATGTCTGATGATTCGTCAATTTAGGCAATT
1 ATGTCTGATGATTCGTCAATTTAGGCAATT
* *
58816993 ATGTTTGATGATTTGTCAATTTAGGCAAT
1 ATGTCTGATGATTCGTCAATTTAGGCAAT
58817022 CACGTCTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.42
Consensus pattern (30 bp):
ATGTCTGATGATTCGTCAATTTAGGCAATT
Found at i:58818119 original size:37 final size:37
Alignment explanation
Indices: 58818060--58818165 Score: 185
Period size: 37 Copynumber: 2.9 Consensus size: 37
58818050 AGCTCAGACG
* *
58818060 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
58818097 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
58818134 TAATCTCCACACGTAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
58818166 AGAATATATT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:58818453 original size:47 final size:47
Alignment explanation
Indices: 58818372--58818565 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
58818362 TATATATATT
* * * *
58818372 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
58818419 CCACATTGGCCATTCGGCCTTATCACACACATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
58818466 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * ** *
58818513 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACGTTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
58818560 TCACAT
1 TCACAT
58818566 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:58818492 original size:22 final size:22
Alignment explanation
Indices: 58818465--58818536 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
58818455 GCTCACATTC
58818465 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
58818487 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
58818511 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
58818534 ATC
1 ATC
58818537 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:58823314 original size:47 final size:47
Alignment explanation
Indices: 58823260--58823758 Score: 784
Period size: 47 Copynumber: 10.6 Consensus size: 47
58823250 TATTTGAATA
58823260 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58823307 AATGTGAAAGTGTATATATGTGATATGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58823354 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58823403 AAGGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58823450 AATGTGAAAGTGTATATATGTGATATGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58823497 AATGTGAAAGTGTATATATGTGATATGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58823544 AATGTGAAAGTGTATATATGTGATATGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58823591 AATGTGAAAGTGTATATATGTGATATGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58823638 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
58823685 AATGTGAAAGTGTATATATATGACAGGGCCGAGTGGCCAACGTGAT-
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
58823731 AGATGTGAAAGTGTATAAATGTGATAAG
1 A-ATGTGAAAGTGTATATATGTGATAAG
58823759 TCCCGAAGGG
Statistics
Matches: 426, Mismatches: 23, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 381 0.89
49 44 0.10
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:58823927 original size:37 final size:37
Alignment explanation
Indices: 58823877--58823994 Score: 209
Period size: 37 Copynumber: 3.2 Consensus size: 37
58823867 CCGAGCTCTA
58823877 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
58823914 AAGACCCGGTGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
58823951 AAGACCCGATGATTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
58823988 AAGACCC
1 AAGACCC
58823995 AATAACTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 77 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:58824015 original size:37 final size:37
Alignment explanation
Indices: 58823877--58824014 Score: 188
Period size: 37 Copynumber: 3.7 Consensus size: 37
58823867 CCGAGCTCTA
*
58823877 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTTCGTGTGGAGATTATGTCCGGGT
* *
58823914 AAGACCCGGTGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTTCGTGTGGAGATTATGTCCGGGT
*
58823951 AAGACCCGATGA-TTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTT-CGTGTGGAGATTATGTCCGGGT
* * * *
58823988 AAGACCCAATAACTTCATATGGAGATT
1 AAGACCCGATGACTTCGTGTGGAGATT
58824015 TCGTCTGAGC
Statistics
Matches: 91, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
36 1 0.01
37 88 0.97
38 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTTCGTGTGGAGATTATGTCCGGGT
Found at i:58847299 original size:42 final size:42
Alignment explanation
Indices: 58847252--58847337 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
58847242 GAGAGGGAAA
*
58847252 GTAAGCTGTAACAGTCTAGTTTTGACCCTAGTCGGAATAGTG
1 GTAAGCTGTAACAGTCTAGTTTAGACCCTAGTCGGAATAGTG
*
58847294 GTAAGCTGTAACAGTCTGGTTTAGACCCTAGTCGGAATAGTG
1 GTAAGCTGTAACAGTCTAGTTTAGACCCTAGTCGGAATAGTG
58847336 GT
1 GT
58847338 TTTGGGAGCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (42 bp):
GTAAGCTGTAACAGTCTAGTTTAGACCCTAGTCGGAATAGTG
Found at i:58848503 original size:57 final size:58
Alignment explanation
Indices: 58848439--58848571 Score: 173
Period size: 57 Copynumber: 2.3 Consensus size: 58
58848429 TCGATTTTGA
* *
58848439 AAATGGCACTTAGTGTGTGAGTTATTGAGGATGGCACTTAGTGTGCAAAACATCCA-G
1 AAATGGCACTTAGTGTGTGAATTATCGAGGATGGCACTTAGTGTGCAAAACATCCACG
*** * *
58848496 AAATGGCACTTAGTGACCGAATTATCGAGGATGGCACTTAGTGTGCGAGACATCCACG
1 AAATGGCACTTAGTGTGTGAATTATCGAGGATGGCACTTAGTGTGCAAAACATCCACG
*
58848554 --ATGGTACTTAGTGTGTGA
1 AAATGGCACTTAGTGTGTGA
58848572 TACATCCGTG
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
56 14 0.22
57 49 0.77
58 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.27
Consensus pattern (58 bp):
AAATGGCACTTAGTGTGTGAATTATCGAGGATGGCACTTAGTGTGCAAAACATCCACG
Found at i:58848556 original size:28 final size:28
Alignment explanation
Indices: 58848441--58848578 Score: 107
Period size: 28 Copynumber: 4.9 Consensus size: 28
58848431 GATTTTGAAA
* ** **
58848441 ATGGCACTTAGTGTGTGAGTTATTGAGG
1 ATGGCACTTAGTGTGCGAGACATCCAGG
* * *
58848469 ATGGCACTTAGTGTGCAAAACATCCAGAA
1 ATGGCACTTAGTGTGCGAGACATCCAG-G
** * *
58848498 ATGGCACTTAGTGACCGA-ATTATCGAGG
1 ATGGCACTTAGTGTGCGAGA-CATCCAGG
*
58848526 ATGGCACTTAGTGTGCGAGACATCCACG
1 ATGGCACTTAGTGTGCGAGACATCCAGG
* * *
58848554 ATGGTACTTAGTGTGTGATACATCC
1 ATGGCACTTAGTGTGCGAGACATCC
58848579 GTGAAGCCAC
Statistics
Matches: 85, Mismatches: 22, Indels: 6
0.75 0.19 0.05
Matches are distributed among these distances:
28 64 0.75
29 21 0.25
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAGACATCCAGG
Found at i:58850836 original size:28 final size:28
Alignment explanation
Indices: 58850773--58850923 Score: 232
Period size: 28 Copynumber: 5.4 Consensus size: 28
58850763 ATATTAAGTC
*
58850773 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
58850800 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
58850828 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
58850856 CGCACACTTAGTGCTATATAATCAAACA
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
58850884 CGAACACTTAGTGCTATACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
58850913 CGCACACTTAG
1 CGCACACTTAG
58850924 CGCCAATCTC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 22 0.19
28 78 0.68
29 15 0.13
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:58853099 original size:78 final size:78
Alignment explanation
Indices: 58852965--58853108 Score: 245
Period size: 78 Copynumber: 1.8 Consensus size: 78
58852955 GATTTCTGAC
* * *
58852965 GATCTGTGGCTGCTTTCAGACTTTCACGGATTACCTTTACTTTCTGTTCGGCATCTTTAATCAAA
1 GATCCGTGGCTGCTTTCAGACTTTCACAGATTACCCTTACTTTCTGTTCGGCATCTTTAATCAAA
58853030 TTAACTCCGAAAT
66 TTAACTCCGAAAT
58853043 GATCCGTGGCTGCCTTT-AGACTTTCACAGATTACCCTTACTTTCTGTTCGGCATCTTTAATCAA
1 GATCCGTGGCTG-CTTTCAGACTTTCACAGATTACCCTTACTTTCTGTTCGGCATCTTTAATCAA
58853107 AT
65 AT
58853109 CGATTCCGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
78 58 0.94
79 4 0.06
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (78 bp):
GATCCGTGGCTGCTTTCAGACTTTCACAGATTACCCTTACTTTCTGTTCGGCATCTTTAATCAAA
TTAACTCCGAAAT
Found at i:58861350 original size:44 final size:44
Alignment explanation
Indices: 58861300--58861387 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
58861290 CATAACGGAG
58861300 AAACCCACTTTCGGCCAACTACTACCAACCTCAAACTCCACTCT
1 AAACCCACTTTCGGCCAACTACTACCAACCTCAAACTCCACTCT
*
58861344 AAACCCACTTTCGGCCAACTACTACCAACCTCAAACTCTACTCT
1 AAACCCACTTTCGGCCAACTACTACCAACCTCAAACTCCACTCT
58861388 TTCCTCCCCT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.32, C:0.42, G:0.05, T:0.22
Consensus pattern (44 bp):
AAACCCACTTTCGGCCAACTACTACCAACCTCAAACTCCACTCT
Found at i:58866968 original size:53 final size:53
Alignment explanation
Indices: 58866872--58867075 Score: 160
Period size: 53 Copynumber: 3.8 Consensus size: 53
58866862 TTCCTTTTTA
* *
58866872 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCTTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGTATCTTTGCCTTATG
* * * *
58866925 AACTCACCGTTGCCATGCCTTGGCATGGTCTTACTTAGG-ATCTTTGGCTTATCG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACGT-GGTATCTTTGCCTTAT-G
** * * * ** * * * * *
58866979 CAGTTTATCAATGCCATGTGTTGACATGGTCTTACATGAT-TTTCTTGCCTTGTAA
1 -AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGTATCT-TTGCCTTAT-G
* * *
58867034 AACTTACCAATGCCATGCCTTGACATGGTCTTACTTGGTATC
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGTATC
58867076 CTTAAACCCT
Statistics
Matches: 115, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
53 43 0.37
54 38 0.33
55 34 0.30
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGTATCTTTGCCTTATG
Found at i:58871892 original size:14 final size:15
Alignment explanation
Indices: 58871873--58871902 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
58871863 GTTTATTATA
58871873 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
58871887 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
58871902 T
1 T
58871903 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:58873248 original size:37 final size:37
Alignment explanation
Indices: 58873189--58873297 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
58873179 AGCTCAGATG
* *
58873189 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
58873226 AAATCTCCACACGTAGTCATCGGGTCTTACTCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
58873263 TAATCTCCATACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
58873298 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:58873473 original size:47 final size:47
Alignment explanation
Indices: 58873442--58873682 Score: 410
Period size: 47 Copynumber: 5.1 Consensus size: 47
58873432 CACTTCCACG
**
58873442 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
58873489 TTCATCACATTGGTCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
58873536 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
58873583 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGTATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
58873630 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
58873677 TTCATC
1 TTCATC
58873683 TCATAGAATC
Statistics
Matches: 183, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 183 1.00
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.36
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:58873520 original size:22 final size:22
Alignment explanation
Indices: 58873492--58873660 Score: 60
Period size: 22 Copynumber: 7.3 Consensus size: 22
58873482 GTTCACATTC
58873492 ATCACATTGGTCATTCGGCCTT
1 ATCACATTGGTCATTCGGCCTT
* * *
58873514 ATCACATAT-ATGCATGTTC-ACATT
1 ATCACAT-TGGT-CA--TTCGGCCTT
*
58873538 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGTCATTCGGCCTT
* * *
58873561 ATCACATAT-TTGCATGTTC-ACATT
1 ATCACAT-TGGT-CA--TTCGGCCTT
*
58873585 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGTCATTCGGCCTT
* * * *
58873608 ATCACATATTTGTATATTC-ACATT
1 ATCAC--ATTGGT-CATTCGGCCTT
*
58873632 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGTCATTCGGCCTT
58873655 ATCACA
1 ATCACA
58873661 CATATGCATG
Statistics
Matches: 103, Mismatches: 25, Indels: 38
0.62 0.15 0.23
Matches are distributed among these distances:
22 36 0.35
23 19 0.18
24 19 0.18
25 29 0.28
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (22 bp):
ATCACATTGGTCATTCGGCCTT
Found at i:58877915 original size:43 final size:43
Alignment explanation
Indices: 58877803--58877917 Score: 158
Period size: 43 Copynumber: 2.7 Consensus size: 43
58877793 AGCTGTGAAT
* **
58877803 AATATTATCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCAATGA
* * *
58877846 GATAATATCGGGCTTCGGGCCTAGCAGGCTATAATTCCAATGA
1 AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCAATGA
* *
58877889 AATGATATCGGGCTTCAAGCCTAGCAGGC
1 AATAATATCGGGCTTCAGGCCTAGCAGGC
58877918 AAAATGTCAG
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (43 bp):
AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCAATGA
Found at i:58878564 original size:11 final size:11
Alignment explanation
Indices: 58878544--58878573 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
58878534 TGTGAAAGAG
*
58878544 TAAATTTGTAA
1 TAAATCTGTAA
58878555 TAAATCTGTAA
1 TAAATCTGTAA
58878566 TAAATCTG
1 TAAATCTG
58878574 CTTGGGACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (11 bp):
TAAATCTGTAA
Found at i:58887421 original size:46 final size:46
Alignment explanation
Indices: 58887246--58887421 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
58887236 TGTAACCCGC
* * *
58887246 CCATAAGTGAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
58887292 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
58887338 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
58887385 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
58887422 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:58887421 original size:93 final size:93
Alignment explanation
Indices: 58887254--58887424 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
58887244 GCCCATAAGT
* * *
58887254 GAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
58887319 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
58887347 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
58887412 TGAGTTCGGATGC
66 CGAGCTCGGATGC
58887425 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:58892627 original size:10 final size:10
Alignment explanation
Indices: 58892612--58892647 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
58892602 GTCCTAATTT
58892612 CATATTTTCA
1 CATATTTTCA
58892622 CATATTTTCA
1 CATATTTTCA
58892632 CATA-TTTCA
1 CATATTTTCA
58892641 CATATTT
1 CATATTT
58892648 CATGAATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (10 bp):
CATATTTTCA
Found at i:58892641 original size:9 final size:9
Alignment explanation
Indices: 58892608--58892649 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
58892598 CTATGTCCTA
*
58892608 ATTTCATAT
1 ATTTCACAT
58892617 -TTTCACAT
1 ATTTCACAT
58892625 ATTTTCACAT
1 A-TTTCACAT
58892635 ATTTCACAT
1 ATTTCACAT
58892644 ATTTCA
1 ATTTCA
58892650 TGAATTATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
8 7 0.23
9 14 0.47
10 9 0.30
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (9 bp):
ATTTCACAT
Found at i:58893720 original size:15 final size:15
Alignment explanation
Indices: 58893700--58893750 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
58893690 GTATCTTGGG
58893700 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
58893715 TTTCTTTATTATGGA
1 TTTCTTTATTCTGGA
58893730 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
58893745 TTTCTT
1 TTTCTT
58893751 CTTTCGGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 3 0.10
15 26 0.84
16 2 0.06
ACGTcount: A:0.14, C:0.12, G:0.12, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:58894310 original size:49 final size:49
Alignment explanation
Indices: 58894235--58894362 Score: 220
Period size: 49 Copynumber: 2.6 Consensus size: 49
58894225 ATGAATTTCA
* *
58894235 TACTAAGTGCAGGCTACTACGTGTACCAGACTATTGGTCGCATGTGTAG
1 TACTAAGTGCAGGCTACTATGCGTACCAGACTATTGGTCGCATGTGTAG
* *
58894284 TACTAAGTGCAAGCTACTATGCGTACCAGACTGTTGGTCGCATGTGTAG
1 TACTAAGTGCAGGCTACTATGCGTACCAGACTATTGGTCGCATGTGTAG
58894333 TACTAAGTGCAGGCTACTATGCGTACCAGA
1 TACTAAGTGCAGGCTACTATGCGTACCAGA
58894363 TATGTAATAT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 74 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (49 bp):
TACTAAGTGCAGGCTACTATGCGTACCAGACTATTGGTCGCATGTGTAG
Done.