Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 178 of 284
Found at i:59939880 original size:5 final size:6
Alignment explanation
Indices: 59939867--59939925 Score: 82
Period size: 6 Copynumber: 9.5 Consensus size: 6
59939857 ATAATTTAAT
* *
59939867 AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAATAA
59939917 AAATAA AAA
1 AAATAA AAA
59939926 ACAAATAATT
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
6 44 0.90
8 5 0.10
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:59947309 original size:2 final size:2
Alignment explanation
Indices: 59947302--59947336 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
59947292 AACACAGCTT
*
59947302 GA GA GA GA GA GA GA GA GA GA GA GA AA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
59947337 GTAGAGAACC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:59948440 original size:20 final size:22
Alignment explanation
Indices: 59948397--59948445 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
59948387 ATTTATATAA
*
59948397 ATATAATAATAAATATGTAGTT
1 ATATAATAATAAATATATAGTT
*
59948419 ATATAATAA-AAATATAT-TTT
1 ATATAATAATAAATATATAGTT
59948439 ATATAAT
1 ATATAAT
59948446 TTATTATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.36
21 7 0.28
22 9 0.36
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (22 bp):
ATATAATAATAAATATATAGTT
Found at i:59949170 original size:99 final size:96
Alignment explanation
Indices: 59949067--59949267 Score: 296
Period size: 96 Copynumber: 2.1 Consensus size: 96
59949057 TTAAGAAAAT
*
59949067 AAAATATATTTAACATAACGATAAATATAAAAATATTTTTTATTATATAATTACATATTTATATG
1 AAAATATATTTAACATAACAATAAATATAAAAATA-TTTTTATTATATAATTACATATTTAT-T-
59949132 AATTTATTTATATAAAT-AAATAAGTTACTAATTA
63 AATTTATTTATATAAATAAAATAA-TTACTAATTA
* * * * *
59949166 AAAATATTTTTAACATAATAATATATATAAATATATTTTTATTATATAATTACATATTTATTATT
1 AAAATATATTTAACATAACAATAAATATAAAAATATTTTTATTATATAATTACATATTTATTAAT
*
59949231 TTATTTATATAAATAAAATAATTATTAATTA
66 TTATTTATATAAATAAAATAATTACTAATTA
59949262 AAAATA
1 AAAATA
59949268 AAAAACTTGA
Statistics
Matches: 94, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
96 31 0.33
97 7 0.07
98 26 0.28
99 30 0.32
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (96 bp):
AAAATATATTTAACATAACAATAAATATAAAAATATTTTTATTATATAATTACATATTTATTAAT
TTATTTATATAAATAAAATAATTACTAATTA
Found at i:59949213 original size:19 final size:19
Alignment explanation
Indices: 59949189--59949229 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
59949179 CATAATAATA
* *
59949189 TATATAAATATATTTTTAT
1 TATATAAATACATATTTAT
*
59949208 TATATAATTACATATTTAT
1 TATATAAATACATATTTAT
59949227 TAT
1 TAT
59949230 TTTATTTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATAAATACATATTTAT
Found at i:59949324 original size:14 final size:13
Alignment explanation
Indices: 59949291--59949329 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
59949281 CAAAATGTTT
59949291 ATTAATTAAAAAC
1 ATTAATTAAAAAC
*
59949304 ATTAATTAAAAAT
1 ATTAATTAAAAAC
*
59949317 TTTAAATTAAAAA
1 ATT-AATTAAAAA
59949330 AACTTTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 14 0.61
14 9 0.39
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:59954933 original size:39 final size:39
Alignment explanation
Indices: 59954890--59955031 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
59954880 AAACATATTC
* * * * *
59954890 ACCTTTAAGCATATACCATATTACACATATAATCACATA
1 ACCTTCAAGCATATATCACAATACTCATATAATCACATA
* * *
59954929 ACCTTTAAGGATATATCACAATACTCATATAATCGCAT-
1 ACCTTCAAGCATATATCACAATACTCATATAATCACATA
59954967 ACCATTCAAGCATATATCACAATACTCATATAATCACATA
1 ACC-TTCAAGCATATATCACAATACTCATATAATCACATA
*
59955007 ACATTCAAGCATATATCACAATACT
1 ACCTTCAAGCATATATCACAATACT
59955032 AAAAAACATG
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
38 3 0.03
39 86 0.95
40 2 0.02
ACGTcount: A:0.43, C:0.23, G:0.04, T:0.30
Consensus pattern (39 bp):
ACCTTCAAGCATATATCACAATACTCATATAATCACATA
Found at i:59959527 original size:48 final size:48
Alignment explanation
Indices: 59959436--59959669 Score: 202
Period size: 48 Copynumber: 4.9 Consensus size: 48
59959426 CTCATAAAGG
* * *
59959436 TGCCAATGCCATGTCCCAGACATGGTCTTATACGGGA-CATCATATCGA
1 TGCCGATGCCATATCCCAGACATGGTCTTACACGGGATC-TCATATCGA
* ** *
59959484 TGCCAATGCCATATCCCAGTTATGGTCTTACATGGGATCTCATA-CTGA
1 TGCCGATGCCATATCCCAGACATGGTCTTACACGGGATCTCATATC-GA
* * * * * * * * *
59959532 TGTCGATGCCATGTCCTAGACGTGATCTTATACTGGATCTCTTATCAA
1 TGCCGATGCCATATCCCAGACATGGTCTTACACGGGATCTCATATCGA
* * * *
59959580 TGCCGATACCATATCCCAGATATGGTCTTACACAGGATCTCATCTCGA
1 TGCCGATGCCATATCCCAGACATGGTCTTACACGGGATCTCATATCGA
** * * * *
59959628 TGCCGATGCCATATCTTAGATATTGTCTTATACGAGATCTCA
1 TGCCGATGCCATATCCCAGACATGGTCTTACACGGGATCTCA
59959670 ATACTCACAA
Statistics
Matches: 146, Mismatches: 37, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
47 1 0.01
48 143 0.98
49 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (48 bp):
TGCCGATGCCATATCCCAGACATGGTCTTACACGGGATCTCATATCGA
Found at i:59959542 original size:96 final size:96
Alignment explanation
Indices: 59959436--59959639 Score: 259
Period size: 96 Copynumber: 2.1 Consensus size: 96
59959426 CTCATAAAGG
* * * *
59959436 TGCCAATGCCATGTCCCAGACATGGTCTTATACGGGA-CATCATATCGATGCCAATGCCATATCC
1 TGCCGATGCCATGTCCCAGACATGATCTTATACGGGATC-TCATATCAATGCCAATACCATATCC
* **
59959500 CAGTTATGGTCTTACATGGGATCTCATACT-GA
65 CAGATATGGTCTTACACAGGATCTCAT-CTCGA
* * * * * *
59959532 TGTCGATGCCATGTCCTAGACGTGATCTTATACTGGATCTCTTATCAATGCCGATACCATATCCC
1 TGCCGATGCCATGTCCCAGACATGATCTTATACGGGATCTCATATCAATGCCAATACCATATCCC
59959597 AGATATGGTCTTACACAGGATCTCATCTCGA
66 AGATATGGTCTTACACAGGATCTCATCTCGA
59959628 TGCCGATGCCAT
1 TGCCGATGCCAT
59959640 ATCTTAGATA
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
95 2 0.02
96 89 0.97
97 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.29
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGATCTTATACGGGATCTCATATCAATGCCAATACCATATCCC
AGATATGGTCTTACACAGGATCTCATCTCGA
Found at i:59959657 original size:96 final size:94
Alignment explanation
Indices: 59959460--59959669 Score: 235
Period size: 96 Copynumber: 2.2 Consensus size: 94
59959450 CCCAGACATG
* * * **
59959460 GTCTTATACGGGA-CATCATATCGATGCCAATGCCATATCCCAGTTATGGTCTTACATGGGATCT
1 GTCTTATAC-GGATC-TCATATCAATGCCAATACCATATCCCAGATATGGTCTTACACAGGATCT
* * *
59959524 CATACTGATGTCGATGCCATGTCCTAGACGT
64 CATACTGATGCCGATGCCATATCCTAGAAGT
* *
59959555 GATCTTATACTGGATCTCTTATCAATGCCGATACCATATCCCAGATATGGTCTTACACAGGATCT
1 G-TCTTATAC-GGATCTCATATCAATGCCAATACCATATCCCAGATATGGTCTTACACAGGATCT
* *
59959620 CAT-CTCGATGCCGATGCCATATCTTAGATATT
64 CATACT-GATGCCGATGCCATATCCTAGA-AGT
59959652 GTCTTATACGAGATCTCA
1 GTCTTATACG-GATCTCA
59959670 ATACTCACAA
Statistics
Matches: 96, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
95 4 0.04
96 89 0.93
97 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (94 bp):
GTCTTATACGGATCTCATATCAATGCCAATACCATATCCCAGATATGGTCTTACACAGGATCTCA
TACTGATGCCGATGCCATATCCTAGAAGT
Found at i:59969613 original size:41 final size:41
Alignment explanation
Indices: 59969556--59969653 Score: 151
Period size: 41 Copynumber: 2.4 Consensus size: 41
59969546 AACCGGCTTG
* *
59969556 CTCACATAAGCAGTCAGTCAAGACGTAACTACTCGGTGCTA
1 CTCACACAAGCTGTCAGTCAAGACGTAACTACTCGGTGCTA
* *
59969597 CTCACACAAGCTGTCAGTTAAGACGTGACTACTCGGTGCTA
1 CTCACACAAGCTGTCAGTCAAGACGTAACTACTCGGTGCTA
*
59969638 CTCATACAAGCTGTCA
1 CTCACACAAGCTGTCA
59969654 AGTAATTGCA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (41 bp):
CTCACACAAGCTGTCAGTCAAGACGTAACTACTCGGTGCTA
Found at i:59973335 original size:50 final size:50
Alignment explanation
Indices: 59973276--59973377 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 50
59973266 ATTTAATGCC
59973276 TATGTTTATTTTCAGGAAGCTAGGAATTGGGAAGGCGAGACCCACAACAG
1 TATGTTTATTTTCAGGAAGCTAGGAATTGGGAAGGCGAGACCCACAACAG
*
59973326 TATGTTTATTTTTAGGAAGCTAGGAATTGGGAAGGCGAGACCCACAACAG
1 TATGTTTATTTTCAGGAAGCTAGGAATTGGGAAGGCGAGACCCACAACAG
59973376 TA
1 TA
59973378 ATGCTGTAGC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.25
Consensus pattern (50 bp):
TATGTTTATTTTCAGGAAGCTAGGAATTGGGAAGGCGAGACCCACAACAG
Found at i:59987948 original size:13 final size:13
Alignment explanation
Indices: 59987930--59987957 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
59987920 AGCCTGGCAA
59987930 CCACGTCACACGG
1 CCACGTCACACGG
59987943 CCACGTCACACGG
1 CCACGTCACACGG
59987956 CC
1 CC
59987958 GTGTCCCTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.50, G:0.21, T:0.07
Consensus pattern (13 bp):
CCACGTCACACGG
Found at i:59993426 original size:15 final size:15
Alignment explanation
Indices: 59993414--59993449 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
59993404 ATGATTAAGG
*
59993414 CACTTAGGATTAACC
1 CACTCAGGATTAACC
59993429 CACTCAGGATTAACC
1 CACTCAGGATTAACC
59993444 CACTCA
1 CACTCA
59993450 TGCCATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.33, C:0.33, G:0.11, T:0.22
Consensus pattern (15 bp):
CACTCAGGATTAACC
Found at i:59995502 original size:24 final size:23
Alignment explanation
Indices: 59995475--59995550 Score: 73
Period size: 23 Copynumber: 3.3 Consensus size: 23
59995465 GGACTCACCA
*
59995475 CAGCTTGTAAGAGCTTACTATTTT
1 CAGCTCGTAAGAGCTTACTA-TTT
* ** *
59995499 CAGCTCATTGGAGCTTACCATTT
1 CAGCTCGTAAGAGCTTACTATTT
* *
59995522 CAGCTCGTATGAGCTTACT-GTT
1 CAGCTCGTAAGAGCTTACTATTT
59995544 CAGCTCG
1 CAGCTCG
59995551 ATAGGGCTTA
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
22 9 0.21
23 18 0.43
24 15 0.36
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (23 bp):
CAGCTCGTAAGAGCTTACTATTT
Found at i:60001272 original size:45 final size:45
Alignment explanation
Indices: 60001222--60001383 Score: 146
Period size: 45 Copynumber: 3.5 Consensus size: 45
60001212 ATTGACGGTT
60001222 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGC
* * * * * * *
60001267 AAGGATCCCGTGTAAGACCATGTCAAGACATGTCATCGGCATGGATT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGG--C
* ** ** *
60001314 AAAGACT-CCATGTAAGACCACATCAAGATGTGGCATTGGCACTAAGAC
1 AAGGA-TACCATGTAAGACCATGTCAAGACATGGCATTGG---TAAGGC
60001362 AAGGATACCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
60001384 ATTGGAACAT
Statistics
Matches: 88, Mismatches: 22, Indels: 11
0.73 0.18 0.09
Matches are distributed among these distances:
45 38 0.43
47 30 0.34
48 18 0.20
50 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.20
Consensus pattern (45 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGC
Found at i:60012591 original size:53 final size:54
Alignment explanation
Indices: 60012383--60012579 Score: 229
Period size: 54 Copynumber: 3.6 Consensus size: 54
60012373 TTGGTAAGAT
* * * *
60012383 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
60012437 AAGGAAATCATGTAAGACCATGTCAAGACAAT-GTATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGAC-ATGGCATTGATGAGTT-CTATAAGGC
* * *
60012492 AAAGG-TCCCATGTAAAACCATGCCAAGACATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
60012545 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
60012580 ATGGTACGTT
Statistics
Matches: 121, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
52 4 0.03
53 33 0.27
54 40 0.33
55 40 0.33
56 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:60018237 original size:29 final size:29
Alignment explanation
Indices: 60018193--60018274 Score: 110
Period size: 29 Copynumber: 2.8 Consensus size: 29
60018183 TGCAATGAGA
* * * *
60018193 TCACACACTCACTGCTTGATAGTTTTACT
1 TCACACACTTAGTGCTCGATAATTTTACT
60018222 TCACACACTTAGTGCTCGATAATTTTACT
1 TCACACACTTAGTGCTCGATAATTTTACT
**
60018251 TTGCACACTTAGTGCTCGATAATT
1 TCACACACTTAGTGCTCGATAATT
60018275 CACATATATA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (29 bp):
TCACACACTTAGTGCTCGATAATTTTACT
Found at i:60032817 original size:47 final size:47
Alignment explanation
Indices: 60032748--60032842 Score: 181
Period size: 47 Copynumber: 2.0 Consensus size: 47
60032738 AGATAGTGTG
*
60032748 ATAGATCTTCAACGAACTTCCAATCGATTAAGCTTTTGATAATCTGT
1 ATAGATCTTCAACGAACTTCCAATCGATTAAGCTTCTGATAATCTGT
60032795 ATAGATCTTCAACGAACTTCCAATCGATTAAGCTTCTGATAATCTGT
1 ATAGATCTTCAACGAACTTCCAATCGATTAAGCTTCTGATAATCTGT
60032842 A
1 A
60032843 AAGCAAAGGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.35
Consensus pattern (47 bp):
ATAGATCTTCAACGAACTTCCAATCGATTAAGCTTCTGATAATCTGT
Found at i:60039821 original size:32 final size:31
Alignment explanation
Indices: 60039767--60039827 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
60039757 AACCTTAATG
**
60039767 TCATCCTTTACTTTGTTGTTTTTCATTCTTT
1 TCATCCTTTACTTTGTCATTTTTCATTCTTT
*
60039798 TCATTCTTGTACTTTGTCATTTTTCATTCT
1 TCATCCTT-TACTTTGTCATTTTTCATTCT
60039828 GTGCAAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 7 0.27
32 19 0.73
ACGTcount: A:0.11, C:0.20, G:0.07, T:0.62
Consensus pattern (31 bp):
TCATCCTTTACTTTGTCATTTTTCATTCTTT
Found at i:60046303 original size:37 final size:37
Alignment explanation
Indices: 60046253--60046325 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
60046243 AAATTAGCTC
60046253 ATTTAATACACAAATCATTCAATTCAACTTAAGACTT
1 ATTTAATACACAAATCATTCAATTCAACTTAAGACTT
60046290 ATTTAATACACAAATCATTCAATTCAACTTAAGACT
1 ATTTAATACACAAATCATTCAATTCAACTTAAGACT
60046326 CATACTTTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.44, C:0.19, G:0.03, T:0.34
Consensus pattern (37 bp):
ATTTAATACACAAATCATTCAATTCAACTTAAGACTT
Found at i:60049566 original size:955 final size:955
Alignment explanation
Indices: 60047717--60049627 Score: 3822
Period size: 955 Copynumber: 2.0 Consensus size: 955
60047707 AAAGGAAGGG
60047717 GGGTAAGCATTATCGCTTAATAAGTAGGTATGTACATGATAAGTAATATATTAACATGCTTTTAT
1 GGGTAAGCATTATCGCTTAATAAGTAGGTATGTACATGATAAGTAATATATTAACATGCTTTTAT
60047782 AAATCTTCATAATATGTTCTCAAGATAATACAATCATAACTGCACATAGTTCCACTATTTATTCA
66 AAATCTTCATAATATGTTCTCAAGATAATACAATCATAACTGCACATAGTTCCACTATTTATTCA
60047847 TGTTCATCTCAAGTTGTCTACTCAAGTCAAAGTCACTAAATTATTTATATCTTGAGCCACGGAAC
131 TGTTCATCTCAAGTTGTCTACTCAAGTCAAAGTCACTAAATTATTTATATCTTGAGCCACGGAAC
60047912 TCCAAATTAAGATCTGCTAATTTTTCCTAAAACTAGGCTCATATATCTTCTTACCATAAAATTTC
196 TCCAAATTAAGATCTGCTAATTTTTCCTAAAACTAGGCTCATATATCTTCTTACCATAAAATTTC
60047977 CAGAATTTTTGGTTTAGCCAATAAGTACATTTTATTCTTTAAAATCACCCCTATTTTGCTATCCA
261 CAGAATTTTTGGTTTAGCCAATAAGTACATTTTATTCTTTAAAATCACCCCTATTTTGCTATCCA
60048042 ATAGTTCCGACCCCTTTGTACTAAAAATTAATTATCTCTTCGTACAAGATTTGGATAATGTTCTC
326 ATAGTTCCGACCCCTTTGTACTAAAAATTAATTATCTCTTCGTACAAGATTTGGATAATGTTCTC
60048107 GTTTGTTTCTTTCGAAAATATACTCATTAAGGATTTTAAGAATATAAATTATAACCCATAATTAT
391 GTTTGTTTCTTTCGAAAATATACTCATTAAGGATTTTAAGAATATAAATTATAACCCATAATTAT
60048172 TTTTTTACAATTTTTAATTATTTTCCAAAATTAGAATAGGGGATTACAAAATCATTCTGACTCTG
456 TTTTTTACAATTTTTAATTATTTTCCAAAATTAGAATAGGGGATTACAAAATCATTCTGACTCTG
60048237 TCTCACAAAAATTCAAATATCCCATAATATGAAATTATTTTGCTTACACCGTTTCCTTTATATGA
521 TCTCACAAAAATTCAAATATCCCATAATATGAAATTATTTTGCTTACACCGTTTCCTTTATATGA
60048302 AAATAGACTCAATAAGATTTTATTTTATATCTTATCCAACTTCTAATTCGATTTCCAACATTTTT
586 AAATAGACTCAATAAGATTTTATTTTATATCTTATCCAACTTCTAATTCGATTTCCAACATTTTT
60048367 GGTGATTTTTCAAAGTCACACAGCTGTTACTGTCCAAAACTGTTTTATTACTAAATTTCACTCTT
651 GGTGATTTTTCAAAGTCACACAGCTGTTACTGTCCAAAACTGTTTTATTACTAAATTTCACTCTT
60048432 TCATGTTTTCTTTGTAGCAACTTTCATTGTAACACTTACTCCATATCAATCTTACCAAAGTTTGA
716 TCATGTTTTCTTTGTAGCAACTTTCATTGTAACACTTACTCCATATCAATCTTACCAAAGTTTGA
60048497 TCACATATCGAGCATGTTGCTCATAATTTTACACACACAAACCTTCACTTATTCATCACATAGTC
781 TCACATATCGAGCATGTTGCTCATAATTTTACACACACAAACCTTCACTTATTCATCACATAGTC
60048562 ATATTCAATTACACCTAGTCATTTCCCGTTGAACACATCAGAATAATAACGAATTCCCGATGGCC
846 ATATTCAATTACACCTAGTCATTTCCCGTTGAACACATCAGAATAATAACGAATTCCCGATGGCC
60048627 TGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
911 TGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
60048672 GGGTAAGCATTATCGCTTAATAAGTAGGTATGTACATGATAAGTAATATATTAACATGCTTTTAT
1 GGGTAAGCATTATCGCTTAATAAGTAGGTATGTACATGATAAGTAATATATTAACATGCTTTTAT
60048737 AAATCTTCATAATATGTTCTCAAGATAATACAATCATAACTGCACATAGTTCCACTATTTATTCA
66 AAATCTTCATAATATGTTCTCAAGATAATACAATCATAACTGCACATAGTTCCACTATTTATTCA
60048802 TGTTCATCTCAAGTTGTCTACTCAAGTCAAAGTCACTAAATTATTTATATCTTGAGCCACGGAAC
131 TGTTCATCTCAAGTTGTCTACTCAAGTCAAAGTCACTAAATTATTTATATCTTGAGCCACGGAAC
60048867 TCCAAATTAAGATCTGCTAATTTTTCCTAAAACTAGGCTCATATATCTTCTTACCATAAAATTTC
196 TCCAAATTAAGATCTGCTAATTTTTCCTAAAACTAGGCTCATATATCTTCTTACCATAAAATTTC
60048932 CAGAATTTTTGGTTTAGCCAATAAGTACATTTTATTCTTTAAAATCACCCCTATTTTGCTATCCA
261 CAGAATTTTTGGTTTAGCCAATAAGTACATTTTATTCTTTAAAATCACCCCTATTTTGCTATCCA
60048997 ATAGTTCCGACCCCTTTGTACTAAAAATTAATTATCTCTTCGTACAAGATTTGGATAATGTTCTC
326 ATAGTTCCGACCCCTTTGTACTAAAAATTAATTATCTCTTCGTACAAGATTTGGATAATGTTCTC
60049062 GTTTGTTTCTTTCGAAAATATACTCATTAAGGATTTTAAGAATATAAATTATAACCCATAATTAT
391 GTTTGTTTCTTTCGAAAATATACTCATTAAGGATTTTAAGAATATAAATTATAACCCATAATTAT
60049127 TTTTTTACAATTTTTAATTATTTTCCAAAATTAGAATAGGGGATTACAAAATCATTCTGACTCTG
456 TTTTTTACAATTTTTAATTATTTTCCAAAATTAGAATAGGGGATTACAAAATCATTCTGACTCTG
60049192 TCTCACAAAAATTCAAATATCCCATAATATGAAATTATTTTGCTTACACCGTTTCCTTTATATGA
521 TCTCACAAAAATTCAAATATCCCATAATATGAAATTATTTTGCTTACACCGTTTCCTTTATATGA
60049257 AAATAGACTCAATAAGATTTTATTTTATATCTTATCCAACTTCTAATTCGATTTCCAACATTTTT
586 AAATAGACTCAATAAGATTTTATTTTATATCTTATCCAACTTCTAATTCGATTTCCAACATTTTT
60049322 GGTGATTTTTCAAAGTCACACAGCTGTTACTGTCCAAAACTGTTTTATTACTAAATTTCACTCTT
651 GGTGATTTTTCAAAGTCACACAGCTGTTACTGTCCAAAACTGTTTTATTACTAAATTTCACTCTT
60049387 TCATGTTTTCTTTGTAGCAACTTTCATTGTAACACTTACTCCATATCAATCTTACCAAAGTTTGA
716 TCATGTTTTCTTTGTAGCAACTTTCATTGTAACACTTACTCCATATCAATCTTACCAAAGTTTGA
60049452 TCACATATCGAGCATGTTGCTCATAATTTTACACACACAAACCTTCACTTATTCATCACATAGTC
781 TCACATATCGAGCATGTTGCTCATAATTTTACACACACAAACCTTCACTTATTCATCACATAGTC
60049517 ATATTCAATTACACCTAGTCATTTCCCGTTGAACACATCAGAATAATAACGAATTCCCGATGGCC
846 ATATTCAATTACACCTAGTCATTTCCCGTTGAACACATCAGAATAATAACGAATTCCCGATGGCC
60049582 TGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
911 TGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
60049627 G
1 G
60049628 TGGCCTTCAC
Statistics
Matches: 956, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
955 956 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.38
Consensus pattern (955 bp):
GGGTAAGCATTATCGCTTAATAAGTAGGTATGTACATGATAAGTAATATATTAACATGCTTTTAT
AAATCTTCATAATATGTTCTCAAGATAATACAATCATAACTGCACATAGTTCCACTATTTATTCA
TGTTCATCTCAAGTTGTCTACTCAAGTCAAAGTCACTAAATTATTTATATCTTGAGCCACGGAAC
TCCAAATTAAGATCTGCTAATTTTTCCTAAAACTAGGCTCATATATCTTCTTACCATAAAATTTC
CAGAATTTTTGGTTTAGCCAATAAGTACATTTTATTCTTTAAAATCACCCCTATTTTGCTATCCA
ATAGTTCCGACCCCTTTGTACTAAAAATTAATTATCTCTTCGTACAAGATTTGGATAATGTTCTC
GTTTGTTTCTTTCGAAAATATACTCATTAAGGATTTTAAGAATATAAATTATAACCCATAATTAT
TTTTTTACAATTTTTAATTATTTTCCAAAATTAGAATAGGGGATTACAAAATCATTCTGACTCTG
TCTCACAAAAATTCAAATATCCCATAATATGAAATTATTTTGCTTACACCGTTTCCTTTATATGA
AAATAGACTCAATAAGATTTTATTTTATATCTTATCCAACTTCTAATTCGATTTCCAACATTTTT
GGTGATTTTTCAAAGTCACACAGCTGTTACTGTCCAAAACTGTTTTATTACTAAATTTCACTCTT
TCATGTTTTCTTTGTAGCAACTTTCATTGTAACACTTACTCCATATCAATCTTACCAAAGTTTGA
TCACATATCGAGCATGTTGCTCATAATTTTACACACACAAACCTTCACTTATTCATCACATAGTC
ATATTCAATTACACCTAGTCATTTCCCGTTGAACACATCAGAATAATAACGAATTCCCGATGGCC
TGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAA
Found at i:60049797 original size:52 final size:52
Alignment explanation
Indices: 60049725--60049906 Score: 206
Period size: 52 Copynumber: 3.5 Consensus size: 52
60049715 ATCGGGTATG
* *
60049725 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGCACATAGTACTACACACGCGACCTAAAACCATTTTAAACA
* * * * * ***
60049777 CATAGTAGCCTTCACATAGTACTGCACATGCGACCT--AATCATCTGGTACA
1 CATAGTAGCCTGCACATAGTACTACACACGCGACCTAAAACCATTTTAAACA
* ** *
60049827 CGTAGTAGCCTGCAGTTAGTACTACACACGGGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGCACATAGTACTACACACGCGACCTAAAACCATTTTAAACA
* *
60049879 CATACTAGCCTGCACATAGTAATACACA
1 CATAGTAGCCTGCACATAGTACTACACA
60049907 TGTGTTCTCA
Statistics
Matches: 101, Mismatches: 27, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
50 38 0.38
52 63 0.62
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (52 bp):
CATAGTAGCCTGCACATAGTACTACACACGCGACCTAAAACCATTTTAAACA
Found at i:60051816 original size:20 final size:20
Alignment explanation
Indices: 60051791--60051832 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
60051781 ACTTTGGACC
60051791 AAATGGTATTGATGCTTGGT
1 AAATGGTATTGATGCTTGGT
60051811 AAATGGTATTGATGCTTGGT
1 AAATGGTATTGATGCTTGGT
60051831 AA
1 AA
60051833 TCTTGTAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.05, G:0.29, T:0.38
Consensus pattern (20 bp):
AAATGGTATTGATGCTTGGT
Found at i:60055377 original size:31 final size:31
Alignment explanation
Indices: 60055339--60055402 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
60055329 CCTTTTCATA
60055339 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
60055370 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
60055401 TT
1 TT
60055403 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:60055701 original size:24 final size:25
Alignment explanation
Indices: 60055623--60055717 Score: 156
Period size: 25 Copynumber: 3.8 Consensus size: 25
60055613 CTCTTTTAAT
60055623 AACTGGGGCAAAGGCCCTTTTCGGTA
1 AACTGGGGCAAA-GCCCTTTTCGGTA
60055649 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
60055674 AACTGGGGCAAAGCCCTTTCCGGT-
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
60055698 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
60055718 GCACTTCCTC
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
24 18 0.27
25 36 0.55
26 12 0.18
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:60055794 original size:20 final size:20
Alignment explanation
Indices: 60055771--60055833 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
60055761 GAACATCTCG
60055771 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
60055791 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
*
60055811 TGTGCATATCATACATACCA
1 TGTGCATATCATACATATCA
60055831 TGT
1 TGT
60055834 TTACTAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.35
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:60063308 original size:37 final size:37
Alignment explanation
Indices: 60063201--60063308 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
60063191 GAAATATATT
*
60063201 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGA
*
60063238 CCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGG
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGA
* * *
60063275 TCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTT
60063309 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGA
Found at i:60073736 original size:39 final size:40
Alignment explanation
Indices: 60073611--60073736 Score: 159
Period size: 40 Copynumber: 3.2 Consensus size: 40
60073601 GGACTAAGAT
* **
60073611 CCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAATC
* * *
60073651 CCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGA-C
1 CCGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAA-ATC
60073691 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAATC
60073730 CCGAAGG
1 CCGAAGG
60073737 TACTTGGGTT
Statistics
Matches: 73, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
38 1 0.01
39 16 0.22
40 54 0.74
41 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAATC
Found at i:60074003 original size:22 final size:22
Alignment explanation
Indices: 60073963--60074004 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
60073953 GAATGTGCAT
*
60073963 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
60073985 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
60074005 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:60079208 original size:22 final size:23
Alignment explanation
Indices: 60079180--60079223 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
60079170 TAATAGGGAA
* *
60079180 TAAAATA-TAAATTTTATGTGGC
1 TAAAATACAAAATATTATGTGGC
60079202 TAAAATACAAAATATTATGTGG
1 TAAAATACAAAATATTATGTGG
60079224 TTGAAACATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (23 bp):
TAAAATACAAAATATTATGTGGC
Found at i:60080677 original size:27 final size:27
Alignment explanation
Indices: 60080638--60080691 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
60080628 AACTGCGAAC
60080638 TGTCCTATAGACACCTATATTACGGAA
1 TGTCCTATAGACACCTATATTACGGAA
* * *
60080665 TGTCCTGTGGACACCTATATTGCGGAA
1 TGTCCTATAGACACCTATATTACGGAA
60080692 GGTCTTGCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (27 bp):
TGTCCTATAGACACCTATATTACGGAA
Found at i:60080705 original size:27 final size:27
Alignment explanation
Indices: 60080646--60080741 Score: 111
Period size: 27 Copynumber: 3.6 Consensus size: 27
60080636 ACTGTCCTAT
* * *
60080646 AGACACCTATATTACGGAATGTCCTGT
1 AGACACCTATATTGCGGAATGTCTTGC
* *
60080673 GGACACCTATATTGCGGAAGGTCTTGC
1 AGACACCTATATTGCGGAATGTCTTGC
* * *
60080700 AAACACCTATGTTGCAGAATGTCTTGC
1 AGACACCTATATTGCGGAATGTCTTGC
*
60080727 AGACACTTATATTGC
1 AGACACCTATATTGC
60080742 AGACTGTCCC
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (27 bp):
AGACACCTATATTGCGGAATGTCTTGC
Found at i:60082039 original size:69 final size:69
Alignment explanation
Indices: 60081927--60082066 Score: 253
Period size: 69 Copynumber: 2.0 Consensus size: 69
60081917 ATATATAACA
60081927 TAACTTAATTTAATTTTCATCAACCAACATCATTCATCAGCTTATTATGAACATAAGTTAGTTCA
1 TAACTTAATTTAATTTTCATCAACCAACATCATTCATCAGCTTATTATGAACATAAGTTAGTTCA
60081992 ATTC
66 ATTC
* * *
60081996 TAACTTAATTTAATTTTCATCAACCAACATTATTCATCGGCTTATTATGCACATAAGTTAGTTCA
1 TAACTTAATTTAATTTTCATCAACCAACATCATTCATCAGCTTATTATGAACATAAGTTAGTTCA
60082061 ATTC
66 ATTC
60082065 TA
1 TA
60082067 TCACTCGCAA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.40
Consensus pattern (69 bp):
TAACTTAATTTAATTTTCATCAACCAACATCATTCATCAGCTTATTATGAACATAAGTTAGTTCA
ATTC
Found at i:60083876 original size:15 final size:16
Alignment explanation
Indices: 60083856--60083891 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
60083846 GAGGTGTTGC
*
60083856 TGATTT-GTGAGTTTG
1 TGATTTGGTGAGATTG
60083871 TGATTTGGTGAGATTG
1 TGATTTGGTGAGATTG
60083887 TGATT
1 TGATT
60083892 AGGCAAGACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (16 bp):
TGATTTGGTGAGATTG
Found at i:60087617 original size:32 final size:33
Alignment explanation
Indices: 60087581--60087642 Score: 76
Period size: 31 Copynumber: 1.9 Consensus size: 33
60087571 ATTTTTTTAA
60087581 AAATAGAAAATTAT-AAAAA-ATA-AAAATAAAAT
1 AAATA-AAAATT-TCAAAAATATATAAAATAAAAT
*
60087613 AAATAAAAGTTTCAAAAATATATAAAATAA
1 AAATAAAAATTTCAAAAATATATAAAATAA
60087643 GAAAATGAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
30 1 0.04
31 10 0.38
32 8 0.31
33 7 0.27
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.24
Consensus pattern (33 bp):
AAATAAAAATTTCAAAAATATATAAAATAAAAT
Found at i:60089111 original size:23 final size:23
Alignment explanation
Indices: 60089037--60089105 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
60089027 GCGAAGATAT
*
60089037 CCTAAGTTGCGAGACTTAGACCT
1 CCTAAGTTGCGAGACTTAGACCG
* ** *
60089060 CCTAATTTGTAAGACTTAGACTG
1 CCTAAGTTGCGAGACTTAGACCG
60089083 CCTAAGTTGCGAGACTTAGACCG
1 CCTAAGTTGCGAGACTTAGACCG
60089106 AATAAGGTTG
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (23 bp):
CCTAAGTTGCGAGACTTAGACCG
Found at i:60097893 original size:31 final size:31
Alignment explanation
Indices: 60097855--60097915 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
60097845 CATTTCAAGC
60097855 TCAATAGTAAGTACTTCCAAGCCCCGTTTTG
1 TCAATAGTAAGTACTTCCAAGCCCCGTTTTG
*
60097886 TCAATAGTAAGTGCTTCCAAGCCCCGTTTT
1 TCAATAGTAAGTACTTCCAAGCCCCGTTTT
60097916 TAGTGCTCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (31 bp):
TCAATAGTAAGTACTTCCAAGCCCCGTTTTG
Found at i:60107827 original size:40 final size:40
Alignment explanation
Indices: 60107729--60107991 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
60107719 TCCTCGTTCA
* * * ** *
60107729 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
60107768 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
60107808 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
60107848 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
60107888 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
60107928 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
60107968 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
60107992 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:60113713 original size:596 final size:596
Alignment explanation
Indices: 60112581--60113774 Score: 2235
Period size: 596 Copynumber: 2.0 Consensus size: 596
60112571 CACAATCGCA
60112581 TCATGCGCGGTCAACCAATCCAAACCAAGGATAACATCAAATTCATCAAACGGCAAAAGCATCAA
1 TCATGCGCGGTCAACCAATCCAAACCAAGGATAACATCAAATTCATCAAACGGCAAAAGCATCAA
60112646 GTCCGCCGGAAAACAGGAACCTCGAATTTCCAGGGGACATTTCTTACACACTTTGTCGACAAGCA
66 GTCCGCCGGAAAACAGGAACCTCGAATTTCCAGGGGACATTTCTTACACACTTTGTCGACAAGCA
60112711 CGTAACGACCCAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTCAATAGGTAAAGTCTTA
131 CGTAACGACCCAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTCAATAGGTAAAGTCTTA
60112776 CTGGATGCTAAGGTTTCACATATGTAAGAATGAGTAGAACCGGGGTCAATCAAAGCAATTACATT
196 CTGGATGCTAAGGTTTCACATATGTAAGAATGAGTAGAACCGGGGTCAATCAAAGCAATTACATT
60112841 AGTATCAAAGAGAGTGAATGTACCGGTAATAACATCAGGCGAAGAAGCATCCTCGCGGGCACGTA
261 AGTATCAAAGAGAGTGAATGTACCGGTAATAACATCAGGCGAAGAAGCATCCTCGCGGGCACGTA
60112906 TAGCATAAGCTCTAGCAGGCGCACGGGCTTCGGATCTGGTTATATCATCTCTAGATCCTCTCTGA
326 TAGCATAAGCTCTAGCAGGCGCACGGGCTTCGGATCTGGTTATATCATCTCTAGATCCTCTCTGA
*
60112971 CCACCACCAGCATTGCCCATATTTCCAGATGGTCTACCTCGAGCAGTGGTAGCACCCGGTTTCCC
391 CCACCACCAGCATTGCCCATATTTCCAGATGGTCTACCTCGAGCAGTGGTAGCACCCGGTCTCCC
* * *
60113036 ACTCTGATTTTCATTCTGTTCAAACAACCTCGGGCAATCTTTAATGAAGTGGTCCACTGATCCGC
456 ACTCTGATTTGCATTCTGTCCAAACAACCTCGGGCAATCTTTAATGAAGTGGTCAACTGATCCGC
*
60113101 ATTTGTAACAGGAGCGGTCAGGAAATCTACAACTCCCCGAATGCCATTTACCGCAATATCGACAT
521 ACTTGTAACAGGAGCGGTCAGGAAATCTACAACTCCCCGAATGCCATTTACCGCAATATCGACAT
*
60113166 TCCGTTCTGTC
586 TCCGTCCTGTC
*
60113177 TCATGCGCGGTCAACCAATCCAACCCAAGGATAACATCAAATTCATCAAACGGCAAAAGCATCAA
1 TCATGCGCGGTCAACCAATCCAAACCAAGGATAACATCAAATTCATCAAACGGCAAAAGCATCAA
*
60113242 GTCCGCTGGAAAACAGGAACCTCGAATTTCCAGGGGACATTTCTTACACACTTTGTCGACAAGCA
66 GTCCGCCGGAAAACAGGAACCTCGAATTTCCAGGGGACATTTCTTACACACTTTGTCGACAAGCA
60113307 CGTAACGACCCAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTCAATAGGTAAAGTCTTA
131 CGTAACGACCCAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTCAATAGGTAAAGTCTTA
*
60113372 CTGGATGCTAAGGTTTCACATATGTAGGAATGAGTAGAACCGGGGTCAATCAAAGCAATTACATT
196 CTGGATGCTAAGGTTTCACATATGTAAGAATGAGTAGAACCGGGGTCAATCAAAGCAATTACATT
*
60113437 AGTATCAAAGAGGGTGAATGTACCGGTAATAACATCAGGCGAAGAAGCATCCTCGCGGGCACGTA
261 AGTATCAAAGAGAGTGAATGTACCGGTAATAACATCAGGCGAAGAAGCATCCTCGCGGGCACGTA
60113502 TAGCATAAGCTCTAGCAGGCGCACGGGCTTCGGATCTGGTTATATCATCTCTAGATCCTCTCTGA
326 TAGCATAAGCTCTAGCAGGCGCACGGGCTTCGGATCTGGTTATATCATCTCTAGATCCTCTCTGA
* *
60113567 CCACCACTAGCATTGCCCGTATTTCCAGATGGTCTACCTCGAGCAGTGGTAGCACCCGGTCTCCC
391 CCACCACCAGCATTGCCCATATTTCCAGATGGTCTACCTCGAGCAGTGGTAGCACCCGGTCTCCC
**
60113632 ACTCTGATTTGCATTCTGTCCCGACAACCTCGGGCAATCTTTAATGAAGTGGTCAACTGATCCGC
456 ACTCTGATTTGCATTCTGTCCAAACAACCTCGGGCAATCTTTAATGAAGTGGTCAACTGATCCGC
* *
60113697 ACTTGTAACAGGAGCGGTCAGGGAATCTACAACTCCCCGAATGCCATTTACCGCAATATCGGCAT
521 ACTTGTAACAGGAGCGGTCAGGAAATCTACAACTCCCCGAATGCCATTTACCGCAATATCGACAT
*
60113762 TTCGTCCTGTC
586 TCCGTCCTGTC
60113773 TC
1 TC
60113775 GACGTTCATT
Statistics
Matches: 581, Mismatches: 17, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
596 581 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.24
Consensus pattern (596 bp):
TCATGCGCGGTCAACCAATCCAAACCAAGGATAACATCAAATTCATCAAACGGCAAAAGCATCAA
GTCCGCCGGAAAACAGGAACCTCGAATTTCCAGGGGACATTTCTTACACACTTTGTCGACAAGCA
CGTAACGACCCAAGGGATTTGACACCCGAATTACGAACTCAGTAGACTCAATAGGTAAAGTCTTA
CTGGATGCTAAGGTTTCACATATGTAAGAATGAGTAGAACCGGGGTCAATCAAAGCAATTACATT
AGTATCAAAGAGAGTGAATGTACCGGTAATAACATCAGGCGAAGAAGCATCCTCGCGGGCACGTA
TAGCATAAGCTCTAGCAGGCGCACGGGCTTCGGATCTGGTTATATCATCTCTAGATCCTCTCTGA
CCACCACCAGCATTGCCCATATTTCCAGATGGTCTACCTCGAGCAGTGGTAGCACCCGGTCTCCC
ACTCTGATTTGCATTCTGTCCAAACAACCTCGGGCAATCTTTAATGAAGTGGTCAACTGATCCGC
ACTTGTAACAGGAGCGGTCAGGAAATCTACAACTCCCCGAATGCCATTTACCGCAATATCGACAT
TCCGTCCTGTC
Found at i:60116374 original size:40 final size:40
Alignment explanation
Indices: 60116276--60116618 Score: 424
Period size: 40 Copynumber: 8.6 Consensus size: 40
60116266 TCCTCGTTCA
* * * * *
60116276 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
60116315 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
60116355 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
60116395 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
60116435 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
60116475 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
60116515 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
60116555 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
60116595 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
60116619 CAGCATTCAA
Statistics
Matches: 275, Mismatches: 23, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
39 39 0.14
40 224 0.81
41 12 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:60116627 original size:41 final size:41
Alignment explanation
Indices: 60116550--60116627 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
60116540 TTTGTATCTC
* * *
60116550 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
60116591 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
60116628 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:60121657 original size:27 final size:27
Alignment explanation
Indices: 60121627--60121804 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60121617 ATATTGAGTC
* * * *
60121627 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
60121654 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60121681 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
60121709 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
60121736 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
60121763 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
60121790 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60121805 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:60121766 original size:82 final size:81
Alignment explanation
Indices: 60121648--60121803 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60121638 TGCTATATAA
* *
60121648 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
60121713 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
60121730 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
60121794 CACTTAGTGC
65 CACTTAGTGC
60121804 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:60122372 original size:13 final size:13
Alignment explanation
Indices: 60122354--60122378 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60122344 TACTAAATTT
60122354 TCATGGATTCAAG
1 TCATGGATTCAAG
60122367 TCATGGATTCAA
1 TCATGGATTCAA
60122379 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:60140994 original size:20 final size:22
Alignment explanation
Indices: 60140969--60141023 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 22
60140959 TCAATGCTTG
60140969 CAAACATAT-ACC-AGCCAATT
1 CAAACATATAACCAAGCCAATT
60140989 CAAACATTATAACCAAGCCAATT
1 CAAACA-TATAACCAAGCCAATT
*
60141012 CAAACATCTAAC
1 CAAACATATAAC
60141024 ATGATATATC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 6 0.19
21 3 0.10
22 8 0.26
23 14 0.45
ACGTcount: A:0.47, C:0.29, G:0.04, T:0.20
Consensus pattern (22 bp):
CAAACATATAACCAAGCCAATT
Found at i:60142931 original size:27 final size:28
Alignment explanation
Indices: 60142893--60142945 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
60142883 AGAGTAAACA
*
60142893 CAATTTGGGCCTAAGCCC-TTTCAGTTT
1 CAATTAGGGCCTAAGCCCATTTCAGTTT
*
60142920 CAATTAGGGCCTTAGCCCATTTCAGT
1 CAATTAGGGCCTAAGCCCATTTCAGT
60142946 AACAGTAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (28 bp):
CAATTAGGGCCTAAGCCCATTTCAGTTT
Found at i:60142971 original size:34 final size:33
Alignment explanation
Indices: 60142926--60143024 Score: 119
Period size: 34 Copynumber: 2.9 Consensus size: 33
60142916 GTTTCAATTA
* *
60142926 GGGCCTTAGCCCATTTCAGTAACAGTAGCAGTTT
1 GGGCCTGAGCCCATTTCAGTAACAGTA-CAGTCT
* *
60142960 GGGCCTGAGCCCATTTCAGTAGCAATATCAGTCT
1 GGGCCTGAGCCCATTTCAGTAACAGTA-CAGTCT
*
60142994 GGGCCTGAGCCCATTACAG-AATCAGTACAGT
1 GGGCCTGAGCCCATTTCAGTAA-CAGTACAGT
60143025 ATCTAATCAG
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
33 5 0.09
34 51 0.91
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (33 bp):
GGGCCTGAGCCCATTTCAGTAACAGTACAGTCT
Found at i:60143754 original size:15 final size:16
Alignment explanation
Indices: 60143716--60143753 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
60143706 TCGATAGCCC
60143716 ACTTTTTGGCTTTTCA
1 ACTTTTTGGCTTTTCA
60143732 ACTTTTTGGCTTTTCA
1 ACTTTTTGGCTTTTCA
*
60143748 GCTTTT
1 ACTTTT
60143754 GTCGTTTCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.11, C:0.18, G:0.13, T:0.58
Consensus pattern (16 bp):
ACTTTTTGGCTTTTCA
Found at i:60147062 original size:18 final size:18
Alignment explanation
Indices: 60147014--60147062 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
60147004 TAGGATTGTA
*
60147014 TACTGTTACTACACTGAT
1 TACTGTTACTGCACTGAT
*
60147032 TACTGTTACTGCACTGTT
1 TACTGTTACTGCACTGAT
* *
60147050 TATTGTTATTGCA
1 TACTGTTACTGCA
60147063 ATGGGCCAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.45
Consensus pattern (18 bp):
TACTGTTACTGCACTGAT
Found at i:60149746 original size:22 final size:22
Alignment explanation
Indices: 60149704--60149747 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
60149694 GAAAATAATC
**
60149704 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATCCATTAT
*
60149726 AAAATTAATTAAAATCCATTAT
1 AAAATTAATCAAAATCCATTAT
60149748 GTTAATAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATCAAAATCCATTAT
Found at i:60150062 original size:34 final size:34
Alignment explanation
Indices: 60150024--60150090 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
60150014 ATCACATATA
*
60150024 TCCATCGAAATTCATCATTCAAAC-GAAACTTAAC
1 TCCATCAAAATTCATCATTCAAACAG-AACTTAAC
*
60150058 TCCATTAAAATTCATCATTCAAACAGAACTTAA
1 TCCATCAAAATTCATCATTCAAACAGAACTTAA
60150091 TATTATTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 29 0.97
35 1 0.03
ACGTcount: A:0.43, C:0.24, G:0.04, T:0.28
Consensus pattern (34 bp):
TCCATCAAAATTCATCATTCAAACAGAACTTAAC
Found at i:60155534 original size:26 final size:26
Alignment explanation
Indices: 60155505--60155640 Score: 211
Period size: 26 Copynumber: 5.2 Consensus size: 26
60155495 TGATACAAAT
60155505 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
60155531 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
60155557 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
60155583 TGATAAT-GAGTTAGGTAAATGTTTCA
1 TGATAATAG-GTTAGGTAAATGTTCCA
* *
60155609 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
60155635 TGATAA
1 TGATAA
60155641 GAATTTCATG
Statistics
Matches: 103, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
25 1 0.01
26 101 0.98
27 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:60157115 original size:28 final size:26
Alignment explanation
Indices: 60157073--60157142 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 26
60157063 AAAAGTAGCT
* * *
60157073 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
*
60157101 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
60157127 AAATTACCGTTATACC
1 AAATTACTGTTATACC
60157143 NNNNNNNNNN
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 18 0.49
27 1 0.03
28 18 0.49
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.31
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:60167462 original size:20 final size:20
Alignment explanation
Indices: 60167424--60167468 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
60167414 ATAAACATAT
* **
60167424 TAAAATTTTTAACGTTATAC
1 TAAAATTTATAACACTATAC
60167444 TAAAATTTATAACACTATAC
1 TAAAATTTATAACACTATAC
*
60167464 CAAAA
1 TAAAA
60167469 CCAAAATGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (20 bp):
TAAAATTTATAACACTATAC
Found at i:60169166 original size:14 final size:13
Alignment explanation
Indices: 60169140--60169164 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60169130 ACTAAGTTAA
60169140 AATTTTTAAAAAT
1 AATTTTTAAAAAT
60169153 AATTTTTAAAAA
1 AATTTTTAAAAA
60169165 ATGAAAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AATTTTTAAAAAT
Found at i:60170031 original size:176 final size:176
Alignment explanation
Indices: 60169707--60170065 Score: 549
Period size: 176 Copynumber: 2.0 Consensus size: 176
60169697 CAACCCCTTT
* * *
60169707 CCAACCCTTAAATAAGAGGATAATGCGCTTCAGTGCATTTAAACCCACGTCCTATTGCATTGGCA
1 CCAACCTTTAAATAAGAGGATAATGCGCTTCAGTACACTTAAACCCACGTCCTATTGCATTGGCA
* * *
60169772 ACAATGTTGATGCCAATTGAGCTAAGACTTAATCAACATCTTTGGTTAGTTTCTAAGCCTCCTAG
66 ACAATGTTGATGCCAACTAAGCTAAGACTTAATCAACATCTTTGGTTAGTTTCTAAACCTCCTAG
* *
60169837 TGTTGTGGTTAGTGTTAGTTTGCCTTTCTCCTCTAGTGTAACCTCC
131 TGTTGTGGTCAATGTTAGTTTGCCTTTCTCCTCTAGTGTAACCTCC
* * ** * *
60169883 CCAACCTTTAAATAAGAGGATAATGTGCTTCAGTACACTTGAACTTATGTCCTCTTGCATTGGCA
1 CCAACCTTTAAATAAGAGGATAATGCGCTTCAGTACACTTAAACCCACGTCCTATTGCATTGGCA
*
60169948 ACAATGTTGATGCCAACTAAGCTAAGA-TTCAATCAACATCTTTGGTTAGTTTCTAAACCTCCTG
66 ACAATGTTGATGCCAACTAAGCTAAGACTT-AATCAACATCTTTGGTTAGTTTCTAAACCTCCTA
* *
60170012 GTGTTTTGGTCAATGTTAGTTTGTCTTTCTCCTCTAGTGTAACCTCC
130 GTGTTGTGGTCAATGTTAGTTTGCCTTTCTCCTCTAGTGTAACCTCC
60170059 CCAACCT
1 CCAACCT
60170066 AACCTAGATG
Statistics
Matches: 165, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
175 2 0.01
176 163 0.99
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (176 bp):
CCAACCTTTAAATAAGAGGATAATGCGCTTCAGTACACTTAAACCCACGTCCTATTGCATTGGCA
ACAATGTTGATGCCAACTAAGCTAAGACTTAATCAACATCTTTGGTTAGTTTCTAAACCTCCTAG
TGTTGTGGTCAATGTTAGTTTGCCTTTCTCCTCTAGTGTAACCTCC
Found at i:60171560 original size:29 final size:28
Alignment explanation
Indices: 60171514--60171568 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
60171504 GATTTATTCC
60171514 GATTTGGCTTCAGGCCATGAATATCAGCT
1 GATTTGGCTTCAGGCCATG-ATATCAGCT
*
60171543 GATTTGGTTTC-GGACCATGATATCAG
1 GATTTGGCTTCAGG-CCATGATATCAG
60171569 TACTTCAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 9 0.38
29 15 0.62
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (28 bp):
GATTTGGCTTCAGGCCATGATATCAGCT
Found at i:60184939 original size:21 final size:18
Alignment explanation
Indices: 60184909--60184950 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 18
60184899 CAATGAGAGT
60184909 AAATGTAATGGAAAGTAATG
1 AAATGTAATGGAAA-TAA-G
60184929 AAATGCTAATGGAAATAAG
1 AAATG-TAATGGAAATAAG
60184948 AAA
1 AAA
60184951 AATTTGAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 8 0.38
21 9 0.43
ACGTcount: A:0.55, C:0.02, G:0.21, T:0.21
Consensus pattern (18 bp):
AAATGTAATGGAAATAAG
Found at i:60187159 original size:13 final size:13
Alignment explanation
Indices: 60187143--60187167 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60187133 TAAACCGAGC
60187143 TATTAAATATTTT
1 TATTAAATATTTT
60187156 TATTAAATATTT
1 TATTAAATATTT
60187168 ATAGAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TATTAAATATTTT
Found at i:60189919 original size:43 final size:42
Alignment explanation
Indices: 60189872--60190024 Score: 132
Period size: 43 Copynumber: 3.6 Consensus size: 42
60189862 AACATATACA
* *
60189872 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAAACATAG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAA-ATAG
* *
60189915 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATC-AGATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCAAAATA-G
* * * * * *
60189957 ATGCCGATGTCCCAGACATGGTCTTACACGTAAAACATAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AATCA-AAATAG
*
60190001 ATGCCAACGTCTCAGACGTGGTCT
1 ATGCCAACGTCCCAGACGTGGTCT
60190025 CACATGGAAA
Statistics
Matches: 87, Mismatches: 15, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
41 3 0.03
42 29 0.33
43 31 0.36
44 22 0.25
45 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAAATAG
Found at i:60192499 original size:27 final size:26
Alignment explanation
Indices: 60192462--60192576 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
60192452 AGCATGGCTG
* *
60192462 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
60192488 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* * *
60192515 CCCGAACAGATGTTTGTGGCATAGCCA
1 CCAGAACAGAT-ATTGTGGCAGAGCCA
*
60192542 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
60192570 CCAGAAC
1 CCAGAAC
60192577 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.14
27 42 0.54
28 25 0.32
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:60192736 original size:27 final size:26
Alignment explanation
Indices: 60192678--60192741 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
60192668 CAAAATTAAC
* * *
60192678 CCTAGGGGTATCATGGTCATTTTGCA
1 CCTAGGGGTATAATGGTAATTTTACA
*
60192704 CCTAGGGGTATAATGGTAATTTTTATA
1 CCTAGGGGTATAATGGTAA-TTTTACA
*
60192731 CTTAGGGGTAT
1 CCTAGGGGTAT
60192742 TTTAGTAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 17 0.53
27 15 0.47
ACGTcount: A:0.23, C:0.12, G:0.27, T:0.38
Consensus pattern (26 bp):
CCTAGGGGTATAATGGTAATTTTACA
Found at i:60218943 original size:37 final size:33
Alignment explanation
Indices: 60218902--60219069 Score: 174
Period size: 31 Copynumber: 5.2 Consensus size: 33
60218892 TGATAAATGA
60218902 TAGCTTCGGCTACACTTATCTGATCAGTGAAAAGTGG
1 TAGCTTCGGCTACAC----CTGATCAGTGAAAAGTGG
60218939 TAGCTTCGGCT--ACCTGATCAGTGAAAAGTGG
1 TAGCTTCGGCTACACCTGATCAGTGAAAAGTGG
* *
60218970 TAGCTTCTGCT--ACCTGATCAGTGAAAAGGGG
1 TAGCTTCGGCTACACCTGATCAGTGAAAAGTGG
* * *
60219001 TAGCTCCAGCT--ACCTGATCAGTGAAAAATGG
1 TAGCTTCGGCTACACCTGATCAGTGAAAAGTGG
*
60219032 TAGC-TCTGGCT--ACCTGATCAGTGAATAGTGG
1 TAGCTTC-GGCTACACCTGATCAGTGAAAAGTGG
60219063 TAGCTTC
1 TAGCTTC
60219070 AACTACAAGT
Statistics
Matches: 119, Mismatches: 10, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
30 1 0.01
31 103 0.87
32 2 0.02
35 2 0.02
37 11 0.09
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (33 bp):
TAGCTTCGGCTACACCTGATCAGTGAAAAGTGG
Found at i:60218959 original size:31 final size:31
Alignment explanation
Indices: 60218921--60219069 Score: 228
Period size: 31 Copynumber: 4.8 Consensus size: 31
60218911 CTACACTTAT
60218921 CTGATCAGTGAAAAGTGGTAGCTTCGGCTAC
1 CTGATCAGTGAAAAGTGGTAGCTTCGGCTAC
*
60218952 CTGATCAGTGAAAAGTGGTAGCTTCTGCTAC
1 CTGATCAGTGAAAAGTGGTAGCTTCGGCTAC
* * *
60218983 CTGATCAGTGAAAAGGGGTAGCTCCAGCTAC
1 CTGATCAGTGAAAAGTGGTAGCTTCGGCTAC
*
60219014 CTGATCAGTGAAAAATGGTAGC-TCTGGCTAC
1 CTGATCAGTGAAAAGTGGTAGCTTC-GGCTAC
*
60219045 CTGATCAGTGAATAGTGGTAGCTTC
1 CTGATCAGTGAAAAGTGGTAGCTTC
60219070 AACTACAAGT
Statistics
Matches: 106, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
30 1 0.01
31 103 0.97
32 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
CTGATCAGTGAAAAGTGGTAGCTTCGGCTAC
Found at i:60219670 original size:31 final size:31
Alignment explanation
Indices: 60219632--60219741 Score: 166
Period size: 31 Copynumber: 3.5 Consensus size: 31
60219622 ACAAATGACA
*
60219632 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
60219663 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
* * *
60219694 AGTGAAAAATGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
* *
60219725 AGCGAATAGTGGTAGCT
1 AGTGAAAAGTGGTAGCT
60219742 TCAACTACAA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
Found at i:60219844 original size:47 final size:47
Alignment explanation
Indices: 60219774--60219898 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 47
60219764 AAGTGATTTC
* *
60219774 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATG-CTA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
60219820 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATGTGATTA
1 C-GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
* * *
60219868 CGTGTAAGACCATAGCTGGGCTATGGCATCA
1 CGTATAAGACCATATCTGGGATATGGCATCA
60219899 TTATGTAAAG
Statistics
Matches: 68, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
46 1 0.01
47 64 0.94
48 3 0.04
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (47 bp):
CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGACTA
Found at i:60220325 original size:25 final size:28
Alignment explanation
Indices: 60220284--60220341 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 28
60220274 GAAATATGAG
* *
60220284 ATGATGATATCTGTACAT-GAAATTTAT
1 ATGATGATATATGTACATCCAAATTTAT
60220311 -TGATGA-ATATGTACATCCAAATTTAT
1 ATGATGATATATGTACATCCAAATTTAT
60220337 ATGAT
1 ATGAT
60220342 AGATTTTAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 9 0.33
26 14 0.52
27 4 0.15
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.40
Consensus pattern (28 bp):
ATGATGATATATGTACATCCAAATTTAT
Found at i:60220632 original size:23 final size:23
Alignment explanation
Indices: 60220602--60220652 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
60220592 ATGATATTTC
*
60220602 AAATACTTTGGTGAATAAAGGTT
1 AAATACTTTGGTGAATAAAGCTT
60220625 AAATACTTTGGTGAATAAAGCTT
1 AAATACTTTGGTGAATAAAGCTT
60220648 AAATA
1 AAATA
60220653 TGAAATAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.43, C:0.06, G:0.18, T:0.33
Consensus pattern (23 bp):
AAATACTTTGGTGAATAAAGCTT
Found at i:60227485 original size:27 final size:27
Alignment explanation
Indices: 60227438--60227513 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
60227428 GGGCAAAATA
*
60227438 GTCATTTTACCCT-CAAGGGGTATGTCG
1 GTCATTTTACACTACAA-GGGTATGTCG
*
60227465 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTTTACACTACAAGGGTATGTCG
* *
60227492 GTAATTTTACACTACAATGGTA
1 GTCATTTTACACTACAAGGGTA
60227514 CTTCAATAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 41 0.93
28 3 0.07
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:60227523 original size:27 final size:27
Alignment explanation
Indices: 60227468--60227527 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
60227458 TATGTCGGTC
* **
60227468 ATTTTACACTACAAGGGTATTTCGGTA
1 ATTTTACACTACAAGGGTACTTCAATA
*
60227495 ATTTTACACTACAATGGTACTTCAATA
1 ATTTTACACTACAAGGGTACTTCAATA
60227522 ATTTTA
1 ATTTTA
60227528 TAAATTGGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTACTTCAATA
Found at i:60227550 original size:27 final size:27
Alignment explanation
Indices: 60227546--60227899 Score: 368
Period size: 27 Copynumber: 13.3 Consensus size: 27
60227536 GGGTGTTTCG
60227546 GTAATTTTACAAATCGAGGGTATTTTA
1 GTAATTTTACAAATCGAGGGTATTTTA
* * *
60227573 GTAATTTTAAAAATCAAAGGTATTTTA
1 GTAATTTTACAAATCGAGGGTATTTTA
* *
60227600 GTAATTTTACAAATTGAGGGTATTTAA
1 GTAATTTTACAAATCGAGGGTATTTTA
* * *
60227627 GTAATTTTACAAATTGAGGGTGTTTTG
1 GTAATTTTACAAATCGAGGGTATTTTA
* *
60227654 GTAATTTCACAAATC-AGGGGTATTTCA
1 GTAATTTTACAAATCGA-GGGTATTTTA
*
60227681 GTAATTTTACAAATCAAGGGTATTTTA
1 GTAATTTTACAAATCGAGGGTATTTTA
* *
60227708 GTAATTTCAC-AATCGAGGGTATTTTG
1 GTAATTTTACAAATCGAGGGTATTTTA
*
60227734 GTAATTTTATAAATC-AGGGGTATTTCT-
1 GTAATTTTACAAATCGA-GGGTATTT-TA
* * *
60227761 GTAATTTCAC-AATCGAAGGTA-TTTC
1 GTAATTTTACAAATCGAGGGTATTTTA
* * *
60227786 GATTATTTTACAAATTG-GGGATATTTCA
1 G-TAATTTTACAAATCGAGGG-TATTTTA
* **
60227814 GTAATTTCAC-AATCGAGGGTATTACA
1 GTAATTTTACAAATCGAGGGTATTTTA
*
60227840 GTAATTTTACAAATCG-GGGTA-TTTC
1 GTAATTTTACAAATCGAGGGTATTTTA
60227865 GATAATTTTACAAATCGAGGGTATTTTA
1 G-TAATTTTACAAATCGAGGGTATTTTA
60227893 GTAATTT
1 GTAATTT
60227900 CTCTTTATTA
Statistics
Matches: 270, Mismatches: 41, Indels: 32
0.79 0.12 0.09
Matches are distributed among these distances:
24 1 0.00
25 5 0.02
26 80 0.30
27 175 0.65
28 9 0.03
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAGGGTATTTTA
Found at i:60227748 original size:53 final size:54
Alignment explanation
Indices: 60227546--60227899 Score: 375
Period size: 53 Copynumber: 6.6 Consensus size: 54
60227536 GGGTGTTTCG
* * * *
60227546 GTAATTTTACAAATCGAGGGTATTTTAGTAATTTTAAAAATCAAAGGTATTTTA
1 GTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTA
* * * ** * *
60227600 GTAATTTTACAAATTGAGGGTATTTAAGTAATTTTACAAATTGAGGGTGTTTTG
1 GTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTA
60227654 GTAATTTCACAAATC-AGGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTA
1 GTAATTTCACAAATCGA-GGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTA
** * *
60227708 GTAATTTCAC-AATCGAGGGTATTTTGGTAATTTTATAAATCAGGGGTATTTCT-
1 GTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTT-TA
* * ** *
60227761 GTAATTTCAC-AATCGAAGGTATTTC-GATTATTTTACAAAT-TGGGGATATTTCA
1 GTAATTTCACAAATCGAGGGTATTTCAG-TAATTTTACAAATCAAGGG-TATTTTA
* * *
60227814 GTAATTTCAC-AATCGAGGGTATTACAGTAATTTTACAAATC-GGGGTA-TTTC
1 GTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTA
* *
60227865 GATAATTTTACAAATCGAGGGTATTTTAGTAATTT
1 G-TAATTTCACAAATCGAGGGTATTTCAGTAATTT
60227900 CTCTTTATTA
Statistics
Matches: 257, Mismatches: 33, Indels: 21
0.83 0.11 0.07
Matches are distributed among these distances:
51 3 0.01
52 15 0.06
53 135 0.53
54 104 0.40
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (54 bp):
GTAATTTCACAAATCGAGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTTA
Found at i:60227844 original size:79 final size:79
Alignment explanation
Indices: 60227541--60227900 Score: 293
Period size: 79 Copynumber: 4.5 Consensus size: 79
60227531 ATTGGGGGTG
* * * * * * **
60227541 TTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTAAAAATCAAAGGTATTTTAGTAATT
1 TTTCGATAATTTTACAAATCGAGGGTATTTCAGTAA-TTTCACAATCGAGGGTATTACAGTAATT
* *
60227606 TTACAAATTGAGGGTA
65 TCACAAATCGA-GGTA
* * * ** *
60227622 TTT-AAGTAATTTTACAAATTGAGGGTGTTTTGGTAATTTCACAAATC-AGGGGTATTTCAGTAA
1 TTTCGA-TAATTTTACAAATCGAGGGTATTTCAGTAATTTCAC-AATCGA-GGGTATTACAGTAA
* *
60227685 TTTTACAAATCAAGGGTA
63 TTTCACAAATCGA-GGTA
* * ** * * * *
60227703 TTT-TAGTAATTTCAC-AATCGAGGGTATTTTGGTAATTTTATAAATC-AGGGGTATTTCTGTAA
1 TTTCGA-TAATTTTACAAATCGAGGGTATTTCAGTAATTTCA-CAATCGA-GGGTATTACAGTAA
60227765 TTTCAC-AATCGAAGGTA
63 TTTCACAAATCG-AGGTA
* *
60227782 TTTCGATTATTTTACAAATTG-GGGATATTTCAGTAATTTCACAATCGAGGGTATTACAGTAATT
1 TTTCGATAATTTTACAAATCGAGGG-TATTTCAGTAATTTCACAATCGAGGGTATTACAGTAATT
* *
60227846 TTACAAATCGGGGTA
65 TCACAAATCGAGGTA
*
60227861 TTTCGATAATTTTACAAATCGAGGGTATTTTAGTAATTTC
1 TTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTC
60227901 TCTTTATTAT
Statistics
Matches: 233, Mismatches: 35, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
79 79 0.34
80 79 0.34
81 75 0.32
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (79 bp):
TTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAATCGAGGGTATTACAGTAATTT
CACAAATCGAGGTA
Found at i:60239127 original size:43 final size:43
Alignment explanation
Indices: 60239061--60239217 Score: 174
Period size: 43 Copynumber: 3.7 Consensus size: 43
60239051 AGCTCATACA
60239061 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCAAATATCG
* * * * *
60239104 ATGCCACTGTCCCAAATAGGGTCTGACATGAAATCAAATA-CG
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCAAATATCG
* * *
60239146 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAAACATGGTCTTACATGT-AATCA-AATATCG
** * *
60239190 ATGCCAACATCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAAACATGGTCTTACA
60239218 CAGTAACACA
Statistics
Matches: 95, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
42 26 0.27
43 40 0.42
44 29 0.31
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAAACATGGTCTTACATGTAATCAAATATCG
Found at i:60241975 original size:28 final size:28
Alignment explanation
Indices: 60241897--60241998 Score: 109
Period size: 28 Copynumber: 3.7 Consensus size: 28
60241887 ATTGCATGAC
* * *
60241897 TATGAAAGTTATTGGGCCTGACGGACCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
60241925 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
* * *
60241953 TATGACTA-TGATTGGGCCCGATGAGCCA
1 TATGA-AAGTGATTGGGCCTGATGGGCCA
* *
60241981 TAT-AATGAGATTGGGCCT
1 TATGAAAGTGATTGGGCCT
60241999 AAAGGGGCCA
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
27 10 0.16
28 51 0.82
29 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (28 bp):
TATGAAAGTGATTGGGCCTGATGGGCCA
Found at i:60246990 original size:18 final size:18
Alignment explanation
Indices: 60246969--60247005 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
60246959 ATTCGTGGTG
*
60246969 TTTTGAAAACATATATCC
1 TTTTGAAAAAATATATCC
*
60246987 TTTTGAAAAAATGTATCC
1 TTTTGAAAAAATATATCC
60247005 T
1 T
60247006 AAAGCTAGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.38, C:0.14, G:0.08, T:0.41
Consensus pattern (18 bp):
TTTTGAAAAAATATATCC
Found at i:60247499 original size:21 final size:21
Alignment explanation
Indices: 60247475--60247521 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
60247465 CGGCACTAAT
* *
60247475 CAGTGATTGCAGCAGAGCTGC
1 CAGTAATTGCAGCACAGCTGC
*
60247496 CAGTAATTGCAGTACAGCTGC
1 CAGTAATTGCAGCACAGCTGC
60247517 CAGTA
1 CAGTA
60247522 CAGTACATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (21 bp):
CAGTAATTGCAGCACAGCTGC
Found at i:60250229 original size:54 final size:54
Alignment explanation
Indices: 60250142--60250290 Score: 154
Period size: 55 Copynumber: 2.7 Consensus size: 54
60250132 GATTTAGGAT
* * * *
60250142 ACCAAGTAAGATCATGCCAAGGCATGACATTGATAAGTTTTACAAGGCAAGGAA
1 ACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTTTACAAGGCAAAGAA
* * * ** * *
60250196 ATCATGTAAGACCATGTCAAGACATGACATTGATAAACTAATATAAGGCAAAGAT
1 ACCATGTAAGACCATGCCAAGACATGACATTGAT-AAGTTTTACAAGGCAAAGAA
* * * *
60250251 CCCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTT
1 ACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTT
60250291 AAAAAGGAAA
Statistics
Matches: 74, Mismatches: 20, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
54 32 0.43
55 42 0.57
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.22
Consensus pattern (54 bp):
ACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTTTACAAGGCAAAGAA
Found at i:60263795 original size:29 final size:27
Alignment explanation
Indices: 60263777--60263846 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
60263767 ATATTAAGTC
60263777 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
60263804 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
60263832 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
60263847 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:60263840 original size:28 final size:28
Alignment explanation
Indices: 60263777--60263874 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
60263767 ATATTAAGTC
*
60263777 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
60263804 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
60263832 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
60263861 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60263875 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:60266724 original size:361 final size:361
Alignment explanation
Indices: 60266060--60266783 Score: 1448
Period size: 361 Copynumber: 2.0 Consensus size: 361
60266050 TTCGAGGTTA
60266060 AACCGAGGAAAGAAAAAGGTTGAGGACTAATTCAAAATATTTGATCGTATTTTGTATCAAGGTAA
1 AACCGAGGAAAGAAAAAGGTTGAGGACTAATTCAAAATATTTGATCGTATTTTGTATCAAGGTAA
60266125 GTTTGCGGTAAATAAATGCAATGTTTTATTATTTACAATTAATGATGTTATTTTTAAGCATTTAT
66 GTTTGCGGTAAATAAATGCAATGTTTTATTATTTACAATTAATGATGTTATTTTTAAGCATTTAT
60266190 ATATTTATTTTGAAAATTTATTTCTTGATGATTCAAGTAAGAAATAATGGAGAAATGATACTTAA
131 ATATTTATTTTGAAAATTTATTTCTTGATGATTCAAGTAAGAAATAATGGAGAAATGATACTTAA
60266255 AAGTTTTGGTTAAACCTTAGGAATGTGTAGGATACAAATGTCATGACATTAGGGTTTAAAGATAC
196 AAGTTTTGGTTAAACCTTAGGAATGTGTAGGATACAAATGTCATGACATTAGGGTTTAAAGATAC
60266320 CAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTAAAATGCAAGGAAATCATGTAAGACC
261 CAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTAAAATGCAAGGAAATCATGTAAGACC
60266385 ATGTCAAGACATGGCATTGATAAACTACTATAAGGC
326 ATGTCAAGACATGGCATTGATAAACTACTATAAGGC
60266421 AACCGAGGAAAGAAAAAGGTTGAGGACTAATTCAAAATATTTGATCGTATTTTGTATCAAGGTAA
1 AACCGAGGAAAGAAAAAGGTTGAGGACTAATTCAAAATATTTGATCGTATTTTGTATCAAGGTAA
60266486 GTTTGCGGTAAATAAATGCAATGTTTTATTATTTACAATTAATGATGTTATTTTTAAGCATTTAT
66 GTTTGCGGTAAATAAATGCAATGTTTTATTATTTACAATTAATGATGTTATTTTTAAGCATTTAT
60266551 ATATTTATTTTGAAAATTTATTTCTTGATGATTCAAGTAAGAAATAATGGAGAAATGATACTTAA
131 ATATTTATTTTGAAAATTTATTTCTTGATGATTCAAGTAAGAAATAATGGAGAAATGATACTTAA
60266616 AAGTTTTGGTTAAACCTTAGGAATGTGTAGGATACAAATGTCATGACATTAGGGTTTAAAGATAC
196 AAGTTTTGGTTAAACCTTAGGAATGTGTAGGATACAAATGTCATGACATTAGGGTTTAAAGATAC
60266681 CAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTAAAATGCAAGGAAATCATGTAAGACC
261 CAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTAAAATGCAAGGAAATCATGTAAGACC
60266746 ATGTCAAGACATGGCATTGATAAACTACTATAAGGC
326 ATGTCAAGACATGGCATTGATAAACTACTATAAGGC
60266782 AA
1 AA
60266784 AGATCCCATG
Statistics
Matches: 363, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
361 363 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (361 bp):
AACCGAGGAAAGAAAAAGGTTGAGGACTAATTCAAAATATTTGATCGTATTTTGTATCAAGGTAA
GTTTGCGGTAAATAAATGCAATGTTTTATTATTTACAATTAATGATGTTATTTTTAAGCATTTAT
ATATTTATTTTGAAAATTTATTTCTTGATGATTCAAGTAAGAAATAATGGAGAAATGATACTTAA
AAGTTTTGGTTAAACCTTAGGAATGTGTAGGATACAAATGTCATGACATTAGGGTTTAAAGATAC
CAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTAAAATGCAAGGAAATCATGTAAGACC
ATGTCAAGACATGGCATTGATAAACTACTATAAGGC
Found at i:60266855 original size:53 final size:53
Alignment explanation
Indices: 60266676--60266879 Score: 201
Period size: 53 Copynumber: 3.8 Consensus size: 53
60266666 AGGGTTTAAA
* * * * * * *
60266676 GATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTAAAATGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAG
* * * * * * * *
60266730 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAG
* * *
60266785 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAG
* *
60266838 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
60266880 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 29, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
53 46 0.39
54 34 0.29
55 39 0.33
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAG
Found at i:60266865 original size:108 final size:109
Alignment explanation
Indices: 60266673--60266869 Score: 288
Period size: 108 Copynumber: 1.8 Consensus size: 109
60266663 ATTAGGGTTT
* * * * *
60266673 AAAGATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTTTAAAATGCAAGGAAATCAT
1 AAAGATACCAAGTAAGACCATGCCAAGGCATGACAATGGTAAGTTTCAAAAGGCAAGGAAACCAC
60266738 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
66 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
* * * * * *
60266782 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAG-TTCATAAGGCAAGGATACCAC
1 AAAGATACCAAGTAAGACCATGCCAAGGCATGACAATGGTAAGTTTCAAAAGGCAAGGAAACCAC
60266846 GTAAGACCATGTCAAGACATGGCA
66 GTAAGACCATGTCAAGACATGGCA
60266870 ATGGTAAGTT
Statistics
Matches: 77, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
108 39 0.51
109 38 0.49
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.20
Consensus pattern (109 bp):
AAAGATACCAAGTAAGACCATGCCAAGGCATGACAATGGTAAGTTTCAAAAGGCAAGGAAACCAC
GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
Found at i:60269698 original size:53 final size:53
Alignment explanation
Indices: 60269516--60269722 Score: 225
Period size: 53 Copynumber: 3.8 Consensus size: 53
60269506 ATTAGGGTTT
* * * * *
60269516 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * *
60269570 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
60269625 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
60269678 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
60269723 TAAAAAGGAA
Statistics
Matches: 124, Mismatches: 27, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
53 46 0.37
54 38 0.31
55 40 0.32
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:60276477 original size:40 final size:40
Alignment explanation
Indices: 60276286--60276470 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
60276276 TTGAATGATG
* * * *
60276286 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * * * *
60276326 TTCGGACTAAGAT-ACGAAGACAATTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60276366 TCCGGGCTAAG-CCCGAAGACATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
60276405 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
60276446 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60276471 AACGAGTAGC
Statistics
Matches: 117, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
39 33 0.28
40 75 0.64
41 9 0.08
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60276492 original size:79 final size:79
Alignment explanation
Indices: 60276340--60276503 Score: 190
Period size: 79 Copynumber: 2.1 Consensus size: 79
60276330 GACTAAGATA
* * **
60276340 CGAAGACAATTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGACATTTGTGCGAGTTACTAAA
1 CGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGACATTTGAACGAGTTACTAAA
*
60276405 TCCGGGTTAAGTCC
66 TCCGGGTTAAATCC
* * *
60276419 CGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGACATTTGAACGAGTTA-CT
* *
60276482 ATATCC-GGTTAAATTC
63 AAATCCGGGTTAAATCC
60276498 CGAAGG
1 CGAAGG
60276504 TACGTGATTT
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (79 bp):
CGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGACATTTGAACGAGTTACTAAA
TCCGGGTTAAATCC
Found at i:60278284 original size:50 final size:48
Alignment explanation
Indices: 60278167--60278296 Score: 140
Period size: 47 Copynumber: 2.7 Consensus size: 48
60278157 GGGTATAGTG
* *
60278167 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCGTCAAGTT
1 CCGATGCCATGT-CCAGACATGGTCTTACACTGGCTCATACATCAAGTT
* * * *
60278216 -C-ATGCCATGTTCCAGACATGGTCTTAGACTAGCTCTCATATATC-CGTT
1 CCGATGCCATG-TCCAGACATGGTCTTACACT-G-GCTCATACATCAAGTT
60278264 CCGATGCCATGTCCTAGACATGGTCTTACACTG
1 CCGATGCCATGTCC-AGACATGGTCTTACACTG
60278297 ACACTCTATA
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
47 26 0.38
48 6 0.09
49 12 0.18
50 24 0.35
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (48 bp):
CCGATGCCATGTCCAGACATGGTCTTACACTGGCTCATACATCAAGTT
Found at i:60278349 original size:24 final size:24
Alignment explanation
Indices: 60278317--60278362 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
60278307 CATGCCGATT
60278317 CCATGTCCCAGAGATGGTCTTATG
1 CCATGTCCCAGAGATGGTCTTATG
*
60278341 CCATGTCCCAGGGATGGTCTTA
1 CCATGTCCCAGAGATGGTCTTA
60278363 CACTGACACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.20, C:0.26, G:0.26, T:0.28
Consensus pattern (24 bp):
CCATGTCCCAGAGATGGTCTTATG
Found at i:60283589 original size:48 final size:50
Alignment explanation
Indices: 60283482--60283606 Score: 159
Period size: 48 Copynumber: 2.5 Consensus size: 50
60283472 CGAGGCTGAC
* * *
60283482 GTCCCAGACATGGTCTTACACTAGC-TCTCATATATCCGTGCTGATACCAT
1 GTCCCAGACATGGTCTTACACTAACACCTCATATA-CCGTGCAGATACCAT
*
60283532 GTCCCAGACATGGTCTTACACTAACACCTC-TATA-CGTGCCAG-TGCCAT
1 GTCCCAGACATGGTCTTACACTAACACCTCATATACCGTG-CAGATACCAT
*
60283580 GTCCCAGACATGGTCTTACACTGACAC
1 GTCCCAGACATGGTCTTACACTAACAC
60283607 AACTCGTAGC
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
48 35 0.51
49 2 0.03
50 28 0.41
51 3 0.04
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (50 bp):
GTCCCAGACATGGTCTTACACTAACACCTCATATACCGTGCAGATACCAT
Found at i:60287973 original size:45 final size:45
Alignment explanation
Indices: 60287922--60288009 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
60287912 CCAAGCCAAC
60287922 ATTAACATTATACTTGATATATCATCACTTGTATTCAAACTTAAA
1 ATTAACATTATACTTGATATATCATCACTTGTATTCAAACTTAAA
*
60287967 ATTAACATTATACTTGATATATCATTACTTGTATTCAAACTTA
1 ATTAACATTATACTTGATATATCATCACTTGTATTCAAACTTA
60288010 CCTTTTTAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.42
Consensus pattern (45 bp):
ATTAACATTATACTTGATATATCATCACTTGTATTCAAACTTAAA
Found at i:60297318 original size:40 final size:41
Alignment explanation
Indices: 60297203--60297368 Score: 178
Period size: 40 Copynumber: 4.1 Consensus size: 41
60297193 ATTATTGATT
* * * * *
60297203 ATTGCACATGCGTG-CCCTTGTTTGTACTTCGATAACCCTA
1 ATTGCACATACATGCCCCTTGTTTGTACTTCGGTACCCCTG
*
60297243 ATTGCACATACGTGCCCC-TGTTTGTACTTCGGTACCCCTG
1 ATTGCACATACATGCCCCTTGTTTGTACTTCGGTACCCCTG
* * *
60297283 ATTGCACATACATGTCCC-TGTTTGTACTTCAGTACCCTTG
1 ATTGCACATACATGCCCCTTGTTTGTACTTCGGTACCCCTG
* * * * *
60297323 ATTACACATTCAT-CCCCTTGCTTGAACTTCGGTACACCTG
1 ATTGCACATACATGCCCCTTGTTTGTACTTCGGTACCCCTG
60297363 ATTGCA
1 ATTGCA
60297369 ATTACGTGCC
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 3 0.03
40 101 0.94
41 3 0.03
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (41 bp):
ATTGCACATACATGCCCCTTGTTTGTACTTCGGTACCCCTG
Found at i:60297331 original size:80 final size:80
Alignment explanation
Indices: 60297203--60297396 Score: 191
Period size: 80 Copynumber: 2.4 Consensus size: 80
60297193 ATTATTGATT
* * * * *
60297203 ATTGCACATGCGTGCCCTTGTTTGTACTTCGATAACCCTAATTGCACATACGTGCCCC-TGTTTG
1 ATTGCACATACATGCCCTTGTTTGTACTTCGATAACCCTAATTACACATACAT-CCCCTTGCTTG
* *
60297267 TACTTCGGTACCCCTG
65 AACTTCGGTACACCTG
* *
60297283 ATTGCACATACATGTCCC-TGTTTGTACTTC-AGT-ACCCTTGATTACACATTCATCCCCTTGCT
1 ATTGCACATACATG-CCCTTGTTTGTACTTCGA-TAACCC-TAATTACACATACATCCCCTTGCT
60297345 TGAACTTCGGTACACCTG
63 TGAACTTCGGTACACCTG
* * * *
60297363 ATTGCA-ATTACGTGCCTTTTTTTATACTTCGATA
1 ATTGCACA-TACATGCCCTTGTTTGTACTTCGATA
60297397 GCCTTGAATG
Statistics
Matches: 93, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
79 12 0.13
80 77 0.83
81 4 0.04
ACGTcount: A:0.20, C:0.28, G:0.15, T:0.37
Consensus pattern (80 bp):
ATTGCACATACATGCCCTTGTTTGTACTTCGATAACCCTAATTACACATACATCCCCTTGCTTGA
ACTTCGGTACACCTG
Found at i:60297445 original size:40 final size:39
Alignment explanation
Indices: 60297359--60297445 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 39
60297349 CTTCGGTACA
* * * *
60297359 CCTGATTGCAATTACGTGCCTTTTTTTATACTTCGATAG
1 CCTGAATGCAATTACGTGCCCTTGTTTATACTTAGATAG
*
60297398 CCTTGAATGCACTTACGTGCCCTTGTTTATACTCTAG-TAAG
1 CC-TGAATGCAATTACGTGCCCTTGTTTATACT-TAGAT-AG
60297439 CCTGAAT
1 CCTGAAT
60297446 AAAATAGAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
39 2 0.05
40 32 0.80
41 6 0.15
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (39 bp):
CCTGAATGCAATTACGTGCCCTTGTTTATACTTAGATAG
Found at i:60302626 original size:23 final size:21
Alignment explanation
Indices: 60302580--60302629 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 21
60302570 GGACCGTATG
60302580 TATGATTTTGATTGATGTTGT
1 TATGATTTTGATTGATGTTGT
60302601 TATGATTTATGATGTGAT-TTGTT
1 TATGATTT-TGAT-TGATGTTG-T
60302624 TATGAT
1 TATGAT
60302630 AATAAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 8 0.31
22 7 0.27
23 11 0.42
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (21 bp):
TATGATTTTGATTGATGTTGT
Found at i:60302833 original size:22 final size:22
Alignment explanation
Indices: 60302805--60302847 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
60302795 TAAAAAACAT
60302805 AGTTCAATTTAGGTTAAGAGAA
1 AGTTCAATTTAGGTTAAGAGAA
*
60302827 AGTTCAATTTAGGTTAGGAGA
1 AGTTCAATTTAGGTTAAGAGA
60302848 TATCAATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.33
Consensus pattern (22 bp):
AGTTCAATTTAGGTTAAGAGAA
Found at i:60303342 original size:54 final size:53
Alignment explanation
Indices: 60303284--60303438 Score: 168
Period size: 54 Copynumber: 2.9 Consensus size: 53
60303274 TAAGTTAGGT
* * * *
60303284 CACACGACTGTCTCACAGGCCGTGTGCTAGGCTGTGTAACTCTTTGACTTGCAA
1 CACACGACTGT-TCGCAGGCCATGTGCTAGGCTATGTAACTCTCTGACTTGCAA
* * *
60303338 CACACGGTCATG-TCGCAGGCCATGTACTAAGCTATGTAACTCTCTGACTTGCAA
1 CACAC-GAC-TGTTCGCAGGCCATGTGCTAGGCTATGTAACTCTCTGACTTGCAA
* * * *
60303392 CACACGACCGTGTCGCAAGCCATGTGCTAGGCCATGTAACTCACTGA
1 CACACGACTGT-TCGCAGGCCATGTGCTAGGCTATGTAACTCTCTGA
60303439 ATTGAAATAA
Statistics
Matches: 83, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
52 1 0.01
53 2 0.02
54 76 0.92
55 2 0.02
56 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.25
Consensus pattern (53 bp):
CACACGACTGTTCGCAGGCCATGTGCTAGGCTATGTAACTCTCTGACTTGCAA
Found at i:60309145 original size:29 final size:29
Alignment explanation
Indices: 60309065--60309184 Score: 86
Period size: 33 Copynumber: 4.0 Consensus size: 29
60309055 TGTTAAAATT
* * *
60309065 ATAATAATAA-AGATA-AAGATAAACAAC
1 ATAATAATAATATATATAATATAAATAAC
60309092 ATAATAAATAATATATGATAAAATATAAATAA-
1 ATAAT-AATAATATAT-AT--AATATAAATAAC
*
60309124 ATAATAGATAATATATATAATAGACAACATAAC
1 ATAATA-ATAATATATATAAT--ATAA-ATAAC
*
60309157 ATAATAATATAAATATATAATA-AAATAA
1 ATAATAATA-ATATATATAATATAAATAA
60309185 TATACAATAA
Statistics
Matches: 76, Mismatches: 5, Indels: 22
0.74 0.05 0.21
Matches are distributed among these distances:
27 5 0.07
28 5 0.07
29 10 0.13
30 3 0.04
31 7 0.09
32 21 0.28
33 25 0.33
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (29 bp):
ATAATAATAATATATATAATATAAATAAC
Found at i:60310259 original size:27 final size:26
Alignment explanation
Indices: 60310224--60310335 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
60310214 AGCATGGCTG
* *
60310224 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
60310250 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
60310278 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
60310305 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
60310332 CCAG
1 CCAG
60310336 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:60310316 original size:54 final size:54
Alignment explanation
Indices: 60310224--60310335 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
60310214 AGCATGGCTG
* *
60310224 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
60310278 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
60310332 CCAG
1 CCAG
60310336 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:60310488 original size:28 final size:28
Alignment explanation
Indices: 60310441--60310507 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
60310431 AAATTAACCC
*
60310441 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
* *
60310469 TAGGGGTATTATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
60310497 TAGGGGTATAA
1 TAGGGGTATAA
60310508 TAGTACATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:60310768 original size:8 final size:8
Alignment explanation
Indices: 60310752--60310783 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
60310742 CCCAAAATAC
60310752 CGGCTTTT
1 CGGCTTTT
*
60310760 CGGCATTT
1 CGGCTTTT
60310768 CGGCTTTT
1 CGGCTTTT
60310776 CGGCTTTT
1 CGGCTTTT
60310784 GCCGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:60312488 original size:185 final size:185
Alignment explanation
Indices: 60312176--60312547 Score: 744
Period size: 185 Copynumber: 2.0 Consensus size: 185
60312166 AAAATTTTTA
60312176 ATTTTACAAACTTTTTTTTCAGAATTCCCAAAAATTTGGGGTGTTACAATTAATAAAATTGTAGG
1 ATTTTACAAACTTTTTTTTCAGAATTCCCAAAAATTTGGGGTGTTACAATTAATAAAATTGTAGG
60312241 GTTAATTTTTAAAATATCAAAACTGAATTTGGGGCCTAATTAGACTGCGCGCTTAAAGAGAGAGA
66 GTTAATTTTTAAAATATCAAAACTGAATTTGGGGCCTAATTAGACTGCGCGCTTAAAGAGAGAGA
60312306 CTCACTGGGTAAATAAACCTAATCCCTAAAACGTCACCGTTTCCAGCGTTCAGGT
131 CTCACTGGGTAAATAAACCTAATCCCTAAAACGTCACCGTTTCCAGCGTTCAGGT
60312361 ATTTTACAAACTTTTTTTTCAGAATTCCCAAAAATTTGGGGTGTTACAATTAATAAAATTGTAGG
1 ATTTTACAAACTTTTTTTTCAGAATTCCCAAAAATTTGGGGTGTTACAATTAATAAAATTGTAGG
60312426 GTTAATTTTTAAAATATCAAAACTGAATTTGGGGCCTAATTAGACTGCGCGCTTAAAGAGAGAGA
66 GTTAATTTTTAAAATATCAAAACTGAATTTGGGGCCTAATTAGACTGCGCGCTTAAAGAGAGAGA
60312491 CTCACTGGGTAAATAAACCTAATCCCTAAAACGTCACCGTTTCCAGCGTTCAGGT
131 CTCACTGGGTAAATAAACCTAATCCCTAAAACGTCACCGTTTCCAGCGTTCAGGT
60312546 AT
1 AT
60312548 CATAGGCTTG
Statistics
Matches: 187, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
185 187 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (185 bp):
ATTTTACAAACTTTTTTTTCAGAATTCCCAAAAATTTGGGGTGTTACAATTAATAAAATTGTAGG
GTTAATTTTTAAAATATCAAAACTGAATTTGGGGCCTAATTAGACTGCGCGCTTAAAGAGAGAGA
CTCACTGGGTAAATAAACCTAATCCCTAAAACGTCACCGTTTCCAGCGTTCAGGT
Found at i:60313693 original size:17 final size:17
Alignment explanation
Indices: 60313671--60313705 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
60313661 TTAAATGGAC
60313671 TGTTTAATTTTATTTTT
1 TGTTTAATTTTATTTTT
60313688 TGTTTAATTTTATTTTT
1 TGTTTAATTTTATTTTT
60313705 T
1 T
60313706 AATTTTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (17 bp):
TGTTTAATTTTATTTTT
Found at i:60314065 original size:44 final size:44
Alignment explanation
Indices: 60314002--60314162 Score: 155
Period size: 44 Copynumber: 3.7 Consensus size: 44
60313992 TTCGATTTAC
* ** * *
60314002 TCCCCGTCAAATATAGAGATGCCAAATCAGCTTCTTGGTTTTGA
1 TCCCCGTCGAATACGGAGATGCCAAATCTGCTTCTTGGATTTGA
* * ** *
60314046 TCCCCGTTGAATACGGAGATGCCAAATCTGTCATCTTGGACCTGC
1 TCCCCGTCGAATACGGAGATGCCAAATCTG-CTTCTTGGATTTGA
* *
60314091 TCCCAGTCAAATAC-GAGATGCCAAATCTGCTTCTTGGATTT-A
1 TCCCCGTCGAATACGGAGATGCCAAATCTGCTTCTTGGATTTGA
* * *
60314133 CTCCTCGTCGAATACGAAGATTCCAAATCT
1 -TCCCCGTCGAATACGGAGATGCCAAATCT
60314163 AATATCTTCG
Statistics
Matches: 92, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
43 20 0.22
44 52 0.57
45 20 0.22
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (44 bp):
TCCCCGTCGAATACGGAGATGCCAAATCTGCTTCTTGGATTTGA
Found at i:60314159 original size:88 final size:88
Alignment explanation
Indices: 60314001--60314214 Score: 236
Period size: 88 Copynumber: 2.4 Consensus size: 88
60313991 CTTCGATTTA
* * * * * *
60314001 CTCCCCGTCAAATATAGAGATGCCAAATCAGCTTCTTGGTTTTGATCCCCGTTGAATACGGAGAT
1 CTCCCAGTCAAATA-CGAGATGCCAAATCTGCTTCTTGGATTTGATCCCCGTCGAATACGAAGAT
* *
60314066 GCCAAATCT-GTCATCTTGGACCTG
65 GCCAAATCTAAT-ATCTTCGACCTG
*
60314090 CTCCCAGTCAAATACGAGATGCCAAATCTGCTTCTTGGATTT-ACTCCTCGTCGAATACGAAGAT
1 CTCCCAGTCAAATACGAGATGCCAAATCTGCTTCTTGGATTTGA-TCCCCGTCGAATACGAAGAT
* *
60314154 TCCAAATCTAATATCTTCGATCTG
65 GCCAAATCTAATATCTTCGACCTG
* * *
60314178 CTCTCTGAC-AATACAGAGATGCCAAATCTGCTATCTT
1 CTCCCAGTCAAATAC-GAGATGCCAAATCTGCT-TCTT
60314215 CGATCTGCTC
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
87 6 0.06
88 83 0.78
89 18 0.17
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (88 bp):
CTCCCAGTCAAATACGAGATGCCAAATCTGCTTCTTGGATTTGATCCCCGTCGAATACGAAGATG
CCAAATCTAATATCTTCGACCTG
Found at i:60314348 original size:133 final size:131
Alignment explanation
Indices: 60314167--60314430 Score: 304
Period size: 133 Copynumber: 2.0 Consensus size: 131
60314157 AAATCTAATA
*
60314167 TCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCCT-TGTA
1 TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTG-TCCTCTG-A
* * *
60314231 -AACGCA-AGGATGCCAAATCATCTTGGATCTGCTTCAATGCAAAAACATCC-GAAGGTTAGATC
64 CAACACAGA-GATGCCAAATCATCTTGGATCTACTTCAATG--AAAACA-CCTGAAGGTCAGATC
60314293 TGCTATG
125 TGCTATG
** ** * * *
60314300 TCTTCGATCTGCTCTCCGTTGAATATGGAGATGCCAAATCTG-TTTCTTCGATTTGTTCTCTGAC
1 TCTTCGATCTGCTCTCCG-ACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGTCCTCTGAC
* * *
60314364 AATACAGAGATGCCAAATCATCTTGGATCTACTTCATTGTAAACACCTGAAGGTCAGATCTGCTA
65 AACACAGAGATGCCAAATCATCTTGGATCTACTTCAATGAAAACACCTGAAGGTCAGATCTGCTA
60314429 TG
130 TG
60314431 CTTTAGCCTG
Statistics
Matches: 112, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
130 2 0.02
131 23 0.21
132 4 0.04
133 63 0.56
134 20 0.18
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (131 bp):
TCTTCGATCTGCTCTCCGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGTCCTCTGACA
ACACAGAGATGCCAAATCATCTTGGATCTACTTCAATGAAAACACCTGAAGGTCAGATCTGCTAT
G
Found at i:60319822 original size:45 final size:45
Alignment explanation
Indices: 60319758--60319847 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
60319748 GTCTACTTCG
60319758 TATATACTCGGCCCAATTTCCAAGGGGATGTCAATCCTTCCCATC
1 TATATACTCGGCCCAATTTCCAAGGGGATGTCAATCCTTCCCATC
*
60319803 TATATACTCGGCCCAATTTCCAATGGGATGTCAATCCTTCCCATC
1 TATATACTCGGCCCAATTTCCAAGGGGATGTCAATCCTTCCCATC
60319848 ACCTTCCTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.30
Consensus pattern (45 bp):
TATATACTCGGCCCAATTTCCAAGGGGATGTCAATCCTTCCCATC
Found at i:60330035 original size:15 final size:15
Alignment explanation
Indices: 60330015--60330079 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
60330005 GTATCTTGGG
60330015 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
60330030 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
60330045 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
60330060 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
60330074 TTTCTT
1 TTTCTT
60330080 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:60330047 original size:30 final size:31
Alignment explanation
Indices: 60330011--60330079 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
60330001 TATCGTATCT
60330011 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
60330041 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
60330071 -GGTTTTCTT
1 TGGGTTTCTT
60330080 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:60332334 original size:49 final size:50
Alignment explanation
Indices: 60332208--60332343 Score: 168
Period size: 50 Copynumber: 2.7 Consensus size: 50
60332198 ATGATTTATT
* * **
60332208 GTGAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTACGTGTATTAGATG
1 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATG
*** *
60332258 GTGAGGTCATTTGTGTAGTACTAAGTGCAGCCTACTACATGTACCAGACT-
1 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGA-TG
*
60332308 GT-TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
60332344 TGAGTACCAG
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
49 29 0.40
50 42 0.58
51 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (50 bp):
GTGAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATG
Found at i:60335391 original size:15 final size:15
Alignment explanation
Indices: 60335371--60335435 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
60335361 GTATCTTGGG
60335371 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
60335386 TTTCTTTGTTCTGGG
1 TTTCTTTATTCTGGA
60335401 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
60335416 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
60335430 TTTCTT
1 TTTCTT
60335436 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 12 0.29
15 25 0.61
16 4 0.10
ACGTcount: A:0.08, C:0.14, G:0.15, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:60335403 original size:30 final size:31
Alignment explanation
Indices: 60335367--60335435 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
60335357 TATCGTATCT
*
60335367 TGGGTTTCTT-TAT-TCTGGATTTCTTTGTTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
60335397 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
60335427 -GGTTTTCTT
1 TGGGTTTCTT
60335436 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 7 0.21
30 26 0.76
31 1 0.03
ACGTcount: A:0.07, C:0.13, G:0.19, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:60340047 original size:18 final size:18
Alignment explanation
Indices: 60340020--60340057 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
60340010 GTATGTATTG
60340020 AAAAAAAAC-AGAAACAA
1 AAAAAAAACAAGAAACAA
*
60340037 AAAAAATAACAATAAACAA
1 AAAAAA-AACAAGAAACAA
60340056 AA
1 AA
60340058 TATCACCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.82, C:0.11, G:0.03, T:0.05
Consensus pattern (18 bp):
AAAAAAAACAAGAAACAA
Found at i:60340682 original size:17 final size:17
Alignment explanation
Indices: 60340660--60340693 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
60340650 AAATGGACTG
*
60340660 TTTAATTTTATTTTTTA
1 TTTAATTTCATTTTTTA
60340677 TTTAATTTCATTTTTTA
1 TTTAATTTCATTTTTTA
60340694 ATTTTTTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTAATTTCATTTTTTA
Found at i:60342270 original size:13 final size:13
Alignment explanation
Indices: 60342251--60342285 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
60342241 TTTTAAACGA
60342251 CTATATGAAATGG
1 CTATATGAAATGG
*
60342264 TTATATGAAATGG
1 CTATATGAAATGG
60342277 CTATATGAA
1 CTATATGAA
60342286 TCGATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.34
Consensus pattern (13 bp):
CTATATGAAATGG
Found at i:60342489 original size:5 final size:5
Alignment explanation
Indices: 60342479--60342509 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
60342469 TTGAGGGACT
60342479 TGTGA TGTGA TGTGA TGTGA TGTGA TGTGA T
1 TGTGA TGTGA TGTGA TGTGA TGTGA TGTGA T
60342510 TCTGATCACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.39, T:0.42
Consensus pattern (5 bp):
TGTGA
Found at i:60344431 original size:43 final size:43
Alignment explanation
Indices: 60344384--60344504 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 43
60344374 CATTCTATTG
* *
60344384 TGATTACGTGTAAGACCTTGTCTGGGACATTGGCATCGTTATA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATATA
* * * * *
60344427 TGATTTCGTGTAAGACCATGTCTGAGACATTTGCATTGATATG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATATA
* * * *
60344470 TGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCAT
60344505 TGTACAAGCT
Statistics
Matches: 64, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
42 5 0.08
43 59 0.92
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGATATA
Found at i:60356049 original size:46 final size:46
Alignment explanation
Indices: 60355993--60356168 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
60355983 TGGTTGAGCA
*
60355993 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAACG
* * * *
60356039 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAA--A--CG
*
60356086 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAACG
* * *
60356132 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGG
60356169 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
45 3 0.03
46 64 0.58
47 29 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAACG
Found at i:60356149 original size:93 final size:93
Alignment explanation
Indices: 60355990--60356160 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
60355980 GGATGGTTGA
* *
60355990 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAACGCCCGAACTCGTTGAGT
60356055 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
60356083 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAACGCCCGAACTCGTTGAGT
60356148 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60356161 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.