Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 179 of 284
Found at i:60363633 original size:46 final size:46
Alignment explanation
Indices: 60363583--60363755 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
60363573 TGGTTGAGCA
60363583 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60363629 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60363674 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
60363722 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60363756 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60363739 original size:93 final size:93
Alignment explanation
Indices: 60363580--60363750 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
60363570 GGATGGTTGA
* *
60363580 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60363645 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
60363673 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60363738 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60363751 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60364017 original size:19 final size:20
Alignment explanation
Indices: 60363980--60364017 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
60363970 ATAAGGTGGT
60363980 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
60364000 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
60364018 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:60366465 original size:3 final size:3
Alignment explanation
Indices: 60366457--60366484 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
60366447 TAAACATACT
60366457 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
60366485 TATTAAATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:60370862 original size:20 final size:21
Alignment explanation
Indices: 60370837--60370877 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
60370827 GTATCAATAT
60370837 TTTAAAAA-TATCGATACTTA
1 TTTAAAAAGTATCGATACTTA
60370857 TTTAAAAAGGTATCGATACTT
1 TTTAAAAA-GTATCGATACTT
60370878 TTTGGCCTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
22 11 0.58
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (21 bp):
TTTAAAAAGTATCGATACTTA
Found at i:60371024 original size:33 final size:33
Alignment explanation
Indices: 60370973--60371063 Score: 110
Period size: 33 Copynumber: 2.8 Consensus size: 33
60370963 TCTCGATGGG
*
60370973 CTATCTTTATTCCATGTTTATTGTCCCAGTAGA
1 CTATCTCTATTCCATGTTTATTGTCCCAGTAGA
* * ** * *
60371006 CTATCTCTATTTCGTGTTTATTGTTTCGGTGGA
1 CTATCTCTATTCCATGTTTATTGTCCCAGTAGA
*
60371039 CTATCTCTATTCCATGTTTACTGTC
1 CTATCTCTATTCCATGTTTATTGTC
60371064 TTGACAGACT
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.16, C:0.21, G:0.14, T:0.48
Consensus pattern (33 bp):
CTATCTCTATTCCATGTTTATTGTCCCAGTAGA
Found at i:60371321 original size:58 final size:57
Alignment explanation
Indices: 60371214--60371328 Score: 133
Period size: 58 Copynumber: 2.0 Consensus size: 57
60371204 GTCTTACTCA
** * *
60371214 TTATACCTTGTTGCCATACCATCTTTCATCTATGGTCTTACACTGTATACCTTATACC
1 TTATACCTTGTAACCATACCATCTTTCATCCATGGTCTTACACTATATACCTT-TACC
* * **
60371272 TTATACCTTGTAACCATAGCGTCTTTCATCCATGGTCTTA-TGTCATATACCTTTACC
1 TTATACCTTGTAACCATACCATCTTTCATCCATGGTCTTACACT-ATATACCTTTACC
60371329 GTGTACCATG
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
57 5 0.10
58 43 0.90
ACGTcount: A:0.23, C:0.27, G:0.10, T:0.41
Consensus pattern (57 bp):
TTATACCTTGTAACCATACCATCTTTCATCCATGGTCTTACACTATATACCTTTACC
Found at i:60373427 original size:18 final size:20
Alignment explanation
Indices: 60373391--60373437 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
60373381 AGTTGTAAGT
60373391 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
60373411 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
60373430 ATGATATA
1 AT-ATATA
60373438 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:60373908 original size:50 final size:50
Alignment explanation
Indices: 60373793--60374121 Score: 304
Period size: 50 Copynumber: 6.5 Consensus size: 50
60373783 TCAGAACACA
* * * *
60373793 TGTGTAGTACTATGTACAGGCTACTATGCGTTTA-AGACAGTT-TTAGGTCATG
1 TGTGTAGTACTAAGTACAGGCTACTA--CGTGTACA-AGA-TTGTTAGGTCACG
* *
60373845 TGTGTAGTACTAAGTACAGGCTACTACGTGTACAAGATTGTTAGGTCGCA
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTACAAGATTGTTAGGTCACG
* * * ** * * *
60373895 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCACG
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTACAAGATTG-TTAGGTCACG
* * *
60373946 TGTGTAGTACAAAGTACAGGCTACTACGGGTATC-AGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTA-CAAGATTGTTAGGTCACG
* ** * * *
60373996 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTACAAGATTGTTAGGTCACG
* *** * * *
60374046 TGTGTAGTACTAAGTACAGGCCACTACGTGTATTGGATGGATAAGTCACG
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTACAAGATTGTTAGGTCACG
*
60374096 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTACAGGCTACTA
60374122 TGCGTACCAG
Statistics
Matches: 230, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
49 3 0.01
50 162 0.70
51 39 0.17
52 26 0.11
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTACAGGCTACTACGTGTACAAGATTGTTAGGTCACG
Found at i:60374169 original size:100 final size:100
Alignment explanation
Indices: 60373845--60374142 Score: 337
Period size: 100 Copynumber: 3.0 Consensus size: 100
60373835 TTAGGTCATG
* * * * * * *
60373845 TGTGTAGTACTAAGTACAGGCTACTACGTGTA-CAAGATTGTTAGGTCGCATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTACAGGCCACTACGGGTATC-AGATGGATAAGTCACGTGTGTAGTACTAAG
* *
60373909 TGCAGGCTACTATGCGTACCCGATAGTTTCGATCACG
65 TGCAGGCTACTATGCGTACCAGATAG-TTCGATCACA
* * * *
60373946 TGTGTAGTACAAAGTACAGGCTACTACGGGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTACAGGCCACTACGGGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGT
* * * * * * * *
60374011 GCAGGCTACTACGTGTACCGGATTGATAGGTCGCA
66 GCAGGCTACTATGCGTACCAGATAGTTCGATCACA
* **
60374046 TGTGTAGTACTAAGTACAGGCCACTACGTGTATTGGATGGATAAGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTACAGGCCACTACGGGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGT
*
60374111 GCAGGCTACTATGCGTACCAGAGAGCTTCGAT
66 GCAGGCTACTATGCGTACCAGATAG-TTCGAT
60374143 TACAAGGGTG
Statistics
Matches: 166, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
100 83 0.50
101 82 0.49
102 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (100 bp):
TGTGTAGTACTAAGTACAGGCCACTACGGGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGT
GCAGGCTACTATGCGTACCAGATAGTTCGATCACA
Found at i:60374353 original size:16 final size:16
Alignment explanation
Indices: 60374332--60374363 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
60374322 AGAATGGAGT
60374332 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
60374348 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
60374364 GAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:60377840 original size:15 final size:15
Alignment explanation
Indices: 60377820--60377863 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
60377810 TATGATATTG
60377820 TATCTTGGATTTC-C
1 TATCTTGGATTTCTC
60377834 TTATCTTGGATTTCTC
1 -TATCTTGGATTTCTC
*
60377850 TATCTTGGACTTCT
1 TATCTTGGATTTCT
60377864 TAATCCTGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.14, C:0.20, G:0.14, T:0.52
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:60377878 original size:30 final size:30
Alignment explanation
Indices: 60377820--60377878 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
60377810 TATGATATTG
* *
60377820 TATCTTGGATTTCCTTATCTTGGATTTCTC
1 TATCTTGGACTTCCTTATCCTGGATTTCTC
*
60377850 TATCTTGGACTT-CTTAATCCTGGTTTTCT
1 TATCTTGGACTTCCTT-ATCCTGGATTTCT
60377879 TGTTATCTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.14, C:0.20, G:0.14, T:0.53
Consensus pattern (30 bp):
TATCTTGGACTTCCTTATCCTGGATTTCTC
Found at i:60382932 original size:40 final size:40
Alignment explanation
Indices: 60382839--60383103 Score: 295
Period size: 40 Copynumber: 6.7 Consensus size: 40
60382829 GCTCCTCGTT
* * * *
60382839 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
**
60382879 C-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
60382918 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
60382958 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
60382998 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
60383038 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
60383079 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
60383104 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 38 0.19
40 144 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:60383112 original size:41 final size:41
Alignment explanation
Indices: 60383035--60383112 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
60383025 TTTGTATCTC
* * *
60383035 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
60383076 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
60383113 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:60384618 original size:14 final size:14
Alignment explanation
Indices: 60384599--60384627 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
60384589 ATAACATCTA
60384599 ATTTTCACACATGC
1 ATTTTCACACATGC
60384613 ATTTTCACACATGC
1 ATTTTCACACATGC
60384627 A
1 A
60384628 CTCACAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (14 bp):
ATTTTCACACATGC
Found at i:60385692 original size:50 final size:50
Alignment explanation
Indices: 60385564--60386017 Score: 360
Period size: 50 Copynumber: 9.0 Consensus size: 50
60385554 GAATGATCCG
** * *
60385564 TTGTTAGAACACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-CCAGA
* *
60385617 TT-TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * * *
60385666 TTGTTAGGTCGCATGTGCAGTACTAAGTGCAGGCTACTATGCGTACCTGA
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * * * * * *
60385716 TAGTTTTGATCACGTGTGTAGTACTAAGTGGAGGCTACTATGTGTATCATA
1 TTG-TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * * * * * *
60385767 -TGATTAGGTCACGTGTGTAATTCTAAGTGCAGGATACTACGCGTACCGGA
1 TTG-TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* ** ** *
60385817 TTGATAGGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * ** * * * *
60385866 TTAACTTCA-ATCATTTATGTAGTACTAAGTGCAGGCTACTACGTGTATCGGA
1 TT--GTT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * * * * * *
60385918 TGGATAAGTCATATGTGTAGTGCTAATTGCAGGCTACTATGTATACCAGA
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * *
60385968 TTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
60386018 GAGCTTCGGT
Statistics
Matches: 313, Mismatches: 79, Indels: 21
0.76 0.19 0.05
Matches are distributed among these distances:
48 3 0.01
49 6 0.02
50 194 0.62
51 71 0.23
52 37 0.12
53 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
Found at i:60385774 original size:101 final size:101
Alignment explanation
Indices: 60385564--60386017 Score: 362
Period size: 101 Copynumber: 4.5 Consensus size: 101
60385554 GAATGATCCG
** * * *** * *
60385564 TTGTTAGAACACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACG
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTTT-GATCACG
*
60385629 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
65 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * *
60385666 TTGTTAGGTCGCATGTGCAGTACTAAGTGCAGGCTACTATGCGTACCTGATAGTTTTGATCACGT
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTTTGATCACGT
* * *
60385731 GTGTAGTACTAAGTGGAGGCTACTATGTGTATCATA
66 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * * * * * * * ** *
60385767 -TGATTAGGTCACGTGTGTAATTCTAAGTGCAGGATACTACGCGTACCGGATTGATAGGTTGCA-
1 TTG-TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTTTGAT-CAC
** *
60385830 -TGTGTAGTACTAAGTGCAGGCTACTATGCATACCCG-
64 GTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* * ** * * * * * * * **
60385866 TTAACTTCA-ATCATTTATGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATGGATAAG-TCA
1 TT--GTT-AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTTTGATCA
** * * *
60385929 TATGTGTAGTGCTAATTGCAGGCTACTATGTATACCAGA
63 CGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
* *
60385968 TTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
60386018 GAGCTTCGGT
Statistics
Matches: 280, Mismatches: 62, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
99 3 0.01
100 69 0.25
101 157 0.56
102 51 0.18
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (101 bp):
TTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTTTGATCACGT
GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
Found at i:60385853 original size:151 final size:151
Alignment explanation
Indices: 60385577--60386014 Score: 536
Period size: 151 Copynumber: 2.9 Consensus size: 151
60385567 TTAGAACACA
* * * * *
60385577 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGA-TG-ATTAGGTCACGTGTGTAGTACTAA
* *
60385642 GTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGCAGTACTAAGTGCAGGCTACTATG
64 GTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATG
* ** **
60385707 CGTACCTGATAGTTTTGATCACG
129 CGTACCCGATAACTTCAATCACG
* * * *
60385730 TGTGTAGTACTAAGTGGAGGCTACTATGTGTATCATATGATTAGGTCACGTGTGTAATTCTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGATTAGGTCACGTGTGTAGTACTAAGT
* * * * *
60385795 GCAGGATACTACGCGTACCGGATTGATAGGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCA
66 GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
* **
60385860 TACCCGTTAACTTCAATCATT
131 TACCCGATAACTTCAATCACG
* * * * ** * *
60385881 TATGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATGGA-TAAGTCATATGTGTAGTGCTAAT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGAT-GATTAGGTCACGTGTGTAGTACTAAG
* *
60385945 TGCAGGCTACTATGTATACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC
65 TGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGC
60386010 GTACC
130 GTACC
60386015 AGAGAGCTTC
Statistics
Matches: 242, Mismatches: 42, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
151 207 0.86
152 3 0.01
153 32 0.13
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGATTAGGTCACGTGTGTAGTACTAAGT
GCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCG
TACCCGATAACTTCAATCACG
Found at i:60386871 original size:180 final size:180
Alignment explanation
Indices: 60386534--60386859 Score: 517
Period size: 180 Copynumber: 1.8 Consensus size: 180
60386524 TCTGAGAGCA
* * *
60386534 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCGAAACTGTCAGACAGTGAAATAGGGATA
1 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCGAAACTATCAAACAGTGAAATAGGGATA
* *
60386599 TATTTAATGAATAAACTGTACTAATTGGATAAACTAAAAATTCTAAAAATCTTATGGTAAGAATA
66 TATTTAATGAATAAACTGTACTAATTGGATAAACCAAAAATTCTAAAAATCTTATGGTAAGAAGA
*
60386664 TATGTGCGTCTAGTTTCTGTAAAAATTAGTGGTTCTCAATTTGGAGTCCC
131 TATATGCGTCTAGTTTCTGTAAAAATTAGTGGTTCTCAATTTGGAGTCCC
* * *
60386714 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTTGAAACTATCAAATAGTGAAATAGGGGTA
1 GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCGAAACTATCAAACAGTGAAATAGGGATA
* * * * *
60386779 TCTTTAATGAATAAATTGTACTAATTGGCTTAACCAAAAATTCTAAAAATTTTATGGTAAGAAGA
66 TATTTAATGAATAAACTGTACTAATTGGATAAACCAAAAATTCTAAAAATCTTATGGTAAGAAGA
*
60386844 TATATGTGTCTAGTTT
131 TATATGCGTCTAGTTT
60386860 TAGATAAAAT
Statistics
Matches: 131, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
180 131 1.00
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (180 bp):
GTACCATGAAATAAATAATTTTTAGTGAAGAGAGGTCGAAACTATCAAACAGTGAAATAGGGATA
TATTTAATGAATAAACTGTACTAATTGGATAAACCAAAAATTCTAAAAATCTTATGGTAAGAAGA
TATATGCGTCTAGTTTCTGTAAAAATTAGTGGTTCTCAATTTGGAGTCCC
Found at i:60391377 original size:16 final size:17
Alignment explanation
Indices: 60391356--60391390 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
60391346 ACCTTTAGAT
60391356 TTTAATCC-CATAGCTA
1 TTTAATCCTCATAGCTA
*
60391372 TTTAATCCTTATAGCTA
1 TTTAATCCTCATAGCTA
60391389 TT
1 TT
60391391 AGAATTTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.29, C:0.20, G:0.06, T:0.46
Consensus pattern (17 bp):
TTTAATCCTCATAGCTA
Found at i:60400766 original size:21 final size:21
Alignment explanation
Indices: 60400740--60400783 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
60400730 AGGGATCCTC
60400740 TTAGCCCTTATTTGTTTATAA
1 TTAGCCCTTATTTGTTTATAA
60400761 TTAGCCCTTATTTGTTTATAA
1 TTAGCCCTTATTTGTTTATAA
60400782 TT
1 TT
60400784 TTCGCCAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.55
Consensus pattern (21 bp):
TTAGCCCTTATTTGTTTATAA
Found at i:60402939 original size:93 final size:93
Alignment explanation
Indices: 60402780--60402952 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
60402770 CGGATATTTG
* * * * * * *
60402780 GGCATCCGAACTCATTGATTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTACAAGCTCACTTATGGATGCGAACGCCCGAACTCATTGAG
60402845 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* *
60402873 GGCATCCGAACTCGTTGAGTTGAGTACAAGCTCACTTATGGATGCGAACGCCCGACCTCATTGAG
1 GGCATCCGAACTCATTGAGTTGAGTACAAGCTCACTTATGGATGCGAACGCCCGAACTCATTGAG
*
60402938 TTGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
60402953 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTACAAGCTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:60402957 original size:46 final size:46
Alignment explanation
Indices: 60402785--60402959 Score: 142
Period size: 46 Copynumber: 3.8 Consensus size: 46
60402775 ATTTGGGCAT
* * *
60402785 CCGAACTCATTGATTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
60402831 CTGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
* * * *
60402876 ATCCGAACTCGTTGAGTTGAGTACAAGCTCACTTATGGATGCGAACGC
1 --CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
60402924 CCGACCTCATTGAGTTGAGTCTGAGTTCGCTTATGG
1 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
60402960 GCGGGTTACA
Statistics
Matches: 96, Mismatches: 24, Indels: 18
0.70 0.17 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
45 3 0.03
46 55 0.57
47 23 0.24
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (46 bp):
CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:60405255 original size:86 final size:86
Alignment explanation
Indices: 60405110--60405281 Score: 317
Period size: 86 Copynumber: 2.0 Consensus size: 86
60405100 CAAGGTATTT
* *
60405110 GTGGGTATTCTTGAGTTGAAAGAATTTGTGGTACTTGTTGATCGGGCTTGCAAGGCTGAAGAACT
1 GTGGGTATTCTTGAGTTGAAAGAATTTGTAGTACTTGTTGATCAGGCTTGCAAGGCTGAAGAACT
60405175 AATTAAAGAGAAGAAAAAGAC
66 AATTAAAGAGAAGAAAAAGAC
*
60405196 GTGGGTATTCTTGAGTTGAAAGAATTTGTAGTGCTTGTTGATCAGGCTTGCAAGGCTGAAGAACT
1 GTGGGTATTCTTGAGTTGAAAGAATTTGTAGTACTTGTTGATCAGGCTTGCAAGGCTGAAGAACT
60405261 AATTAAAGAGAAGAAAAAGAC
66 AATTAAAGAGAAGAAAAAGAC
60405282 AGAGGCTGAG
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 83 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.28
Consensus pattern (86 bp):
GTGGGTATTCTTGAGTTGAAAGAATTTGTAGTACTTGTTGATCAGGCTTGCAAGGCTGAAGAACT
AATTAAAGAGAAGAAAAAGAC
Found at i:60409964 original size:46 final size:46
Alignment explanation
Indices: 60409896--60410068 Score: 276
Period size: 46 Copynumber: 3.8 Consensus size: 46
60409886 TTTGGGCATC
*
60409896 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-GT
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGT
* *
60409941 CTGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAACGGT
1 C-GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGT
*
60409988 CGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGT
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGT
* *
60410034 CGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
60410069 GCGGGTTATA
Statistics
Matches: 121, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
45 1 0.01
46 117 0.97
47 3 0.02
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.29
Consensus pattern (46 bp):
CGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGT
Found at i:60416903 original size:30 final size:30
Alignment explanation
Indices: 60416845--60416905 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
60416835 TTCCCGAGCC
*
60416845 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATACAAAAGTT
* * * *
60416875 TAGGGGCAAAATTGTAATTTTACCAAAGTT
1 TAGGGGCAAAAGTGTAAATATACAAAAGTT
60416905 T
1 T
60416906 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATACAAAAGTT
Found at i:60417688 original size:68 final size:66
Alignment explanation
Indices: 60417616--60417787 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
60417606 CATCATGTGT
* * * *
60417616 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
60417679 TGTAG
62 TGTAG
** * *
60417684 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
60417749 AG
65 AG
* * * *
60417751 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
60417788 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:60417721 original size:64 final size:64
Alignment explanation
Indices: 60417640--60417823 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
60417630 AGACATTATG
* * *
60417640 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
60417704 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
60417769 AA
63 AA
* * *
60417771 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
60417824 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:60418854 original size:16 final size:17
Alignment explanation
Indices: 60418833--60418864 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
60418823 ACTATGGTAT
60418833 ATGAAAT-ATTGATATA
1 ATGAAATAATTGATATA
60418849 ATGAAATAATTGATAT
1 ATGAAATAATTGATAT
60418865 GTGTTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (17 bp):
ATGAAATAATTGATATA
Found at i:60430860 original size:43 final size:42
Alignment explanation
Indices: 60430813--60430912 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 42
60430803 AGACCCCGTT
* * *
60430813 TGGGACATTGGCATTGTATTAA-GGTTTCGTGTAAAACCATGTC
1 TGGGACATTGGCATCG--TTAACGATTTCCTGTAAAACCATGTC
* *
60430856 TGGGACATTGGCATCGTTAATCGATTTCCTGTAAGACCCTGTC
1 TGGGACATTGGCATCGTTAA-CGATTTCCTGTAAAACCATGTC
*
60430899 TGGGACAGTGGCAT
1 TGGGACATTGGCAT
60430913 AGATATGTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
41 4 0.08
43 45 0.92
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (42 bp):
TGGGACATTGGCATCGTTAACGATTTCCTGTAAAACCATGTC
Found at i:60433372 original size:15 final size:16
Alignment explanation
Indices: 60433345--60433375 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
60433335 AGTTGTGGAA
60433345 TTGAGTAATGAAATGG
1 TTGAGTAATGAAATGG
60433361 TTGAGT-ATGAAATGG
1 TTGAGTAATGAAATGG
60433376 CATGAAAGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.32
Consensus pattern (16 bp):
TTGAGTAATGAAATGG
Found at i:60435833 original size:26 final size:27
Alignment explanation
Indices: 60435804--60435857 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
60435794 TCACACAAGT
*
60435804 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
60435830 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
60435857 T
1 T
60435858 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:60435888 original size:27 final size:27
Alignment explanation
Indices: 60435858--60435949 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
60435848 GGGGCAAAAT
* *
60435858 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* *
60435885 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* * *
60435912 GGTAATTCTACCTTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATCTC
*
60435939 AGTAATTCTAC
1 GGTAATTCTAC
60435950 AACTTATCTA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATCTC
Found at i:60451613 original size:23 final size:24
Alignment explanation
Indices: 60451587--60451638 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
60451577 GTGATTTGCT
60451587 TTTGAGATGATGAAAT-GGT-ATAA
1 TTTGAGAT-ATGAAATAGGTGATAA
*
60451610 TTTGAGGTATGAAATAGGTGATAA
1 TTTGAGATATGAAATAGGTGATAA
*
60451634 GTTGA
1 TTTGA
60451639 AAGGTAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 7 0.28
23 10 0.40
24 8 0.32
ACGTcount: A:0.37, C:0.00, G:0.29, T:0.35
Consensus pattern (24 bp):
TTTGAGATATGAAATAGGTGATAA
Found at i:60464238 original size:40 final size:39
Alignment explanation
Indices: 60464140--60464402 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
60464130 TCCTCGTTCA
* * * *
60464140 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
60464179 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
60464218 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
60464258 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
60464298 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
60464338 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
60464379 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
60464403 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:60464362 original size:120 final size:119
Alignment explanation
Indices: 60464140--60464402 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
60464130 TCCTCGTTCA
* * *
60464140 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
60464205 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
60464258 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
60464323 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
60464379 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
60464403 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:60464411 original size:41 final size:41
Alignment explanation
Indices: 60464334--60464411 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
60464324 TTTGTATCTC
* * *
60464334 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
60464375 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
60464412 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:60472184 original size:40 final size:39
Alignment explanation
Indices: 60472086--60472348 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
60472076 TCCTCGTTCA
* * * *
60472086 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
60472125 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
60472164 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
60472204 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
60472244 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
60472284 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
60472325 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
60472349 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:60472308 original size:120 final size:119
Alignment explanation
Indices: 60472086--60472348 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
60472076 TCCTCGTTCA
* * *
60472086 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
60472151 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
60472204 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
60472269 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
60472325 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
60472349 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:60472357 original size:41 final size:41
Alignment explanation
Indices: 60472280--60472357 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
60472270 TTTGTATCTC
* * *
60472280 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
60472321 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
60472358 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:60476401 original size:66 final size:66
Alignment explanation
Indices: 60476276--60476403 Score: 154
Period size: 66 Copynumber: 1.9 Consensus size: 66
60476266 GCATGTGACT
* * *
60476276 GGTCGTGTGATACAAGTCAGTAACCTCCCTAGTTTTCCCACGGCCATGGTACACTGGCGTGTCTT
1 GGTCGTGTGATACAAGTCAGTAACATCCCTAGTTTTCACACGGCCATGGTACACAGGCGTGTCTT
60476341 C
66 C
* **
60476342 GGTCGTGTGGTACAAGTCAGTATGTATGCCCT-GTTTTCACACGGCCTAT-G-ACACAGGCGTGT
1 GGTCGTGTGATACAAGTCAGTA-ACAT-CCCTAGTTTTCACACGGCC-ATGGTACACAGGCGTGT
60476404 TTGGCCTCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
66 32 0.60
67 15 0.28
68 6 0.11
ACGTcount: A:0.19, C:0.26, G:0.27, T:0.29
Consensus pattern (66 bp):
GGTCGTGTGATACAAGTCAGTAACATCCCTAGTTTTCACACGGCCATGGTACACAGGCGTGTCTT
C
Found at i:60476952 original size:3 final size:3
Alignment explanation
Indices: 60476944--60476990 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
60476934 TCACATCCCA
60476944 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
60476991 GTGAAAGTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:60478836 original size:42 final size:42
Alignment explanation
Indices: 60478773--60478852 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
60478763 AATTAAGAAG
** *
60478773 TCCGAACTCGTTGAGTGGTCCGGGTTCGTGACATATATGACA
1 TCCGAACTCGTTGAGCAGTCCGAGTTCGTGACATATATGACA
* *
60478815 TCCGAGCTCGTTGAGCAGTCCGAGTTCGTGATATATAT
1 TCCGAACTCGTTGAGCAGTCCGAGTTCGTGACATATAT
60478853 ATATATAAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (42 bp):
TCCGAACTCGTTGAGCAGTCCGAGTTCGTGACATATATGACA
Found at i:60478984 original size:43 final size:43
Alignment explanation
Indices: 60478904--60478986 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
60478894 GATATATGTG
* * *
60478904 GCATCCGAGCTCGTTGAGAGGTCTGAGCTCAGTATGGATGAGA
1 GCATCCGAACTCATTGAGAGGTCCGAGCTCAGTATGGATGAGA
* *
60478947 GCATCCGAACTCATTGAGTGGTCCGAGTTCA-TGATGGATG
1 GCATCCGAACTCATTGAGAGGTCCGAGCTCAGT-ATGGATG
60478987 CGATGCATGT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 1 0.03
43 33 0.97
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (43 bp):
GCATCCGAACTCATTGAGAGGTCCGAGCTCAGTATGGATGAGA
Found at i:60482141 original size:87 final size:87
Alignment explanation
Indices: 60481995--60482168 Score: 339
Period size: 87 Copynumber: 2.0 Consensus size: 87
60481985 AGCGAGCCTC
*
60481995 CGACCGTTCCCGATTTCTGAACTAGCTCGTCAAAACTACAAAGAATGGAAAGGAGGGAGTAAGCA
1 CGACCATTCCCGATTTCTGAACTAGCTCGTCAAAACTACAAAGAATGGAAAGGAGGGAGTAAGCA
60482060 TAAATGCTTACTAAGTTCACAT
66 TAAATGCTTACTAAGTTCACAT
60482082 CGACCATTCCCGATTTCTGAACTAGCTCGTCAAAACTACAAAGAATGGAAAGGAGGGAGTAAGCA
1 CGACCATTCCCGATTTCTGAACTAGCTCGTCAAAACTACAAAGAATGGAAAGGAGGGAGTAAGCA
60482147 TAAATGCTTACTAAGTTCACAT
66 TAAATGCTTACTAAGTTCACAT
60482169 GCAAATAGCA
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 86 1.00
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (87 bp):
CGACCATTCCCGATTTCTGAACTAGCTCGTCAAAACTACAAAGAATGGAAAGGAGGGAGTAAGCA
TAAATGCTTACTAAGTTCACAT
Found at i:60485718 original size:15 final size:15
Alignment explanation
Indices: 60485671--60485735 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 15
60485661 GTATCGTATA
60485671 TTGGATTTTTTTTATC
1 TTGGA-TTTTTTTATC
* *
60485687 TTGGATTTCTTCATC
1 TTGGATTTTTTTATC
*
60485702 TTGGATTTTTTTGTC
1 TTGGATTTTTTTATC
* * *
60485717 TTAGATTTCTTTATT
1 TTGGATTTTTTTATC
60485732 TTGG
1 TTGG
60485736 TCTTCTTGTC
Statistics
Matches: 39, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
15 34 0.87
16 5 0.13
ACGTcount: A:0.12, C:0.09, G:0.15, T:0.63
Consensus pattern (15 bp):
TTGGATTTTTTTATC
Found at i:60488837 original size:43 final size:43
Alignment explanation
Indices: 60488755--60488866 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 43
60488745 TTCGAACTTG
* * ** *
60488755 TTGAGTGGTCCAAGTTCGTGATATATGT-GGCATCCGAGCTCA
1 TTGAGTGGTCCACGTTCATGATGGATGTAAGCATCCGAGCTCA
* * *
60488797 TTGAAG-GGTCCGA-GTTCATTATGGATGTAAGCATCTGAGCTCG
1 TTG-AGTGGTCC-ACGTTCATGATGGATGTAAGCATCCGAGCTCA
60488840 TTGAGTGGTCCACGTTCATGATGGATG
1 TTGAGTGGTCCACGTTCATGATGGATG
60488867 CAATACATGT
Statistics
Matches: 57, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
42 22 0.39
43 35 0.61
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.31
Consensus pattern (43 bp):
TTGAGTGGTCCACGTTCATGATGGATGTAAGCATCCGAGCTCA
Found at i:60492624 original size:50 final size:50
Alignment explanation
Indices: 60492524--60492657 Score: 160
Period size: 50 Copynumber: 2.7 Consensus size: 50
60492514 TAAGTGGCAA
* * * * * **
60492524 TATATCTACATATCAATGGTGGCTAGTCCATAAAGTGTTATAAGTGGCAG
1 TATATCTGCATATCAGTGGTGGCTTGTCCACAAAGCGTTATAAGAAGCAG
*
60492574 TATATCTGCATACCAGTGGTGGCTTGTCCACAAAGCGTTATAAGAAGCAG
1 TATATCTGCATATCAGTGGTGGCTTGTCCACAAAGCGTTATAAGAAGCAG
* * * *
60492624 TTTATCTGCAAATCAGTGGTAGCTTGTGCACAAA
1 TATATCTGCATATCAGTGGTGGCTTGTCCACAAA
60492658 TAATGATTCA
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 71 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (50 bp):
TATATCTGCATATCAGTGGTGGCTTGTCCACAAAGCGTTATAAGAAGCAG
Found at i:60493877 original size:35 final size:35
Alignment explanation
Indices: 60493831--60493904 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
60493821 TAGAAATAAG
60493831 TCTTTGTAAAAGGACCTTTGATGAATTTGATGATA
1 TCTTTGTAAAAGGACCTTTGATGAATTTGATGATA
60493866 TCTTTGTAAAAGGACCTTTGATGAATTTGATGATA
1 TCTTTGTAAAAGGACCTTTGATGAATTTGATGATA
60493901 TCTT
1 TCTT
60493905 CTTACTTTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (35 bp):
TCTTTGTAAAAGGACCTTTGATGAATTTGATGATA
Found at i:60504229 original size:27 final size:28
Alignment explanation
Indices: 60504199--60504260 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 28
60504189 AAAATAAAAG
60504199 TAAATTTCA-AAT-TTTGA-AAATAATTTT
1 TAAATTTCACAATATTT-ATAAA-AATTTT
*
60504226 TAAAATTCACAATATTTATAAAAATTTT
1 TAAATTTCACAATATTTATAAAAATTTT
*
60504254 AAAATTT
1 TAAATTT
60504261 TTATTTTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
27 8 0.28
28 15 0.52
29 6 0.21
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (28 bp):
TAAATTTCACAATATTTATAAAAATTTT
Found at i:60509388 original size:6 final size:6
Alignment explanation
Indices: 60509379--60509447 Score: 93
Period size: 6 Copynumber: 11.5 Consensus size: 6
60509369 AATGGATGCG
* * * * *
60509379 AAAATT AAAATT AAAATT AAAATT ATAATC AAAATC AAAATC AAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
60509427 AAAATC AAAATC AAAATC AAA
1 AAAATC AAAATC AAAATC AAA
60509448 GTTTCAAATA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 60 1.00
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (6 bp):
AAAATC
Found at i:60513589 original size:55 final size:54
Alignment explanation
Indices: 60513466--60513714 Score: 279
Period size: 54 Copynumber: 4.6 Consensus size: 54
60513456 CTTACCATTT
* * *
60513466 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATG
1 CCATGTCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATG
* *
60513519 TCATGCCTTGGCATGGTCTTACATTGG-A-CCTTTGCCTTATAGTAACTCATCAATG
1 CCATGTCTTGGCATGGTCTTACA-TGGTATCC-TTGCCTTATAG-AACTCATCAATG
* * * * * * * **
60513574 TCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTATAAAACTTATGGATG
1 CCATGTCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATG
* * *
60513628 CCATGTATTGGCATGGTCTTACATGGTTTCCTTGCCTTATAGAACTTATCAATG
1 CCATGTCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATG
* *
60513682 CCATGCCTTGGCATGGTCTTACATGATATCCTT
1 CCATGTCTTGGCATGGTCTTACATGGTATCCTT
60513715 ATCTTACCAA
Statistics
Matches: 164, Mismatches: 26, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
52 2 0.01
53 29 0.18
54 90 0.55
55 42 0.26
56 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (54 bp):
CCATGTCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATG
Found at i:60513748 original size:47 final size:47
Alignment explanation
Indices: 60513693--60513814 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
60513683 CATGCCTTGG
*
60513693 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATACCATGTTCCAAA
60513740 CATGGTCTTACATGATATCCTTATCTTACCAAATACCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATACCATGTTCCAAA
* *
60513787 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTATCTTA
60513815 GTGCCAATGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATACCATGTTCCAAA
Found at i:60513889 original size:47 final size:48
Alignment explanation
Indices: 60513786--60513948 Score: 167
Period size: 47 Copynumber: 3.5 Consensus size: 48
60513776 CATGTTCCAA
** * **
60513786 ACATGGTCTTACATGGTATCCTTGTCTTAGTGCCAATGCCACATCTTG
1 ACATGGTCTTACATGGTATCCTTGAATTAATGCCAATGCCATGTCTTG
** *
60513834 ATGTGGTCTTACATGG-AGTCCTT-AATTAATGCCGATGCCATGTCTTG
1 ACATGGTCTTACATGGTA-TCCTTGAATTAATGCCAATGCCATGTCTTG
* **
60513881 ACATGGTCTTACACAGG-ATCCTTGCCTT-A--CCAATGCCATGTCTTG
1 ACATGGTCTTACA-TGGTATCCTTGAATTAATGCCAATGCCATGTCTTG
60513926 ACATGGTCTTACATGGTATCCTT
1 ACATGGTCTTACATGGTATCCTT
60513949 AATCGTTAAT
Statistics
Matches: 96, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
44 2 0.02
45 34 0.35
47 36 0.38
48 24 0.25
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (48 bp):
ACATGGTCTTACATGGTATCCTTGAATTAATGCCAATGCCATGTCTTG
Found at i:60517956 original size:46 final size:46
Alignment explanation
Indices: 60517906--60518081 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
60517896 TGGTTGAGCA
60517906 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60517952 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60517997 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60518045 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60518082 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60518062 original size:93 final size:93
Alignment explanation
Indices: 60517903--60518074 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60517893 GGATGGTTGA
* *
60517903 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60517968 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
60517996 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60518061 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
60518075 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60538039 original size:43 final size:41
Alignment explanation
Indices: 60537927--60538075 Score: 122
Period size: 43 Copynumber: 3.5 Consensus size: 41
60537917 CAATGCCAAA
*
60537927 GTCCCAGACGTAGTCTTACATGT-AATCAAATATCGATGCCACT
1 GTCCCAGACATAGTCTTACAT-TAAATCAAATA-CGATGCCA-T
* * ** * **
60537970 ATCCCAGATAGGGTCTTATAGGAAATCAAATACGATGCCGAT
1 GTCCCAGACATAGTCTTACATTAAATCAAATACGATGCC-AT
60538012 GTCCCAGACATAGTCTTACACTTAAATCATAAGT-CGATGCCAAT
1 GTCCCAGACATAGTCTTACA-TTAAATCA-AA-TACGATGCC-AT
* *
60538056 GTCCCAGACGTGGTCTTACA
1 GTCCCAGACATAGTCTTACA
60538076 CGAAAACATA
Statistics
Matches: 83, Mismatches: 18, Indels: 9
0.75 0.16 0.08
Matches are distributed among these distances:
42 23 0.28
43 30 0.36
44 29 0.35
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (41 bp):
GTCCCAGACATAGTCTTACATTAAATCAAATACGATGCCAT
Found at i:60547743 original size:18 final size:18
Alignment explanation
Indices: 60547722--60547777 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
60547712 TAATAGTCAG
*
60547722 TTATTCGATAACAATCAA
1 TTATTCAATAACAATCAA
* *
60547740 TTATTCAATAATAATCAG
1 TTATTCAATAACAATCAA
* * *
60547758 TTATTTAGTATCAATCAA
1 TTATTCAATAACAATCAA
60547776 TT
1 TT
60547778 GATCGGTTAT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.41
Consensus pattern (18 bp):
TTATTCAATAACAATCAA
Found at i:60547831 original size:18 final size:19
Alignment explanation
Indices: 60547784--60547852 Score: 95
Period size: 19 Copynumber: 3.7 Consensus size: 19
60547774 AATTGATCGG
*
60547784 TTATCCAGTAACAATTAAA
1 TTATTCAGTAACAATTAAA
* *
60547803 TTATTCAGTAAAAATCAAA
1 TTATTCAGTAACAATTAAA
*
60547822 -TATACAGTAACAATTAAA
1 TTATTCAGTAACAATTAAA
60547840 TTATTCAGTAACA
1 TTATTCAGTAACA
60547853 GTCGATCTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
18 15 0.36
19 27 0.64
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.32
Consensus pattern (19 bp):
TTATTCAGTAACAATTAAA
Found at i:60548097 original size:12 final size:12
Alignment explanation
Indices: 60548080--60548114 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
60548070 AGTGTCGAAT
*
60548080 CGGTAATAGTAA
1 CGGTAACAGTAA
60548092 CGGTAACAGTAA
1 CGGTAACAGTAA
*
60548104 CAGTAACAGTA
1 CGGTAACAGTA
60548115 GTCGGTACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.20
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:60557893 original size:20 final size:20
Alignment explanation
Indices: 60557868--60557920 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
60557858 AACAGGGGTC
60557868 ACACGCCCATGTGGCTTGGG
1 ACACGCCCATGTGGCTTGGG
* *
60557888 ACACGCCCGTGTGGTTTGGG
1 ACACGCCCATGTGGCTTGGG
60557908 ACACGCCCATGTG
1 ACACGCCCATGTG
60557921 TGTAATAGCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.15, C:0.30, G:0.34, T:0.21
Consensus pattern (20 bp):
ACACGCCCATGTGGCTTGGG
Found at i:60576788 original size:55 final size:54
Alignment explanation
Indices: 60576701--60576955 Score: 251
Period size: 55 Copynumber: 4.8 Consensus size: 54
60576691 ATTTGGGTTT
*
60576701 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * *
60576756 AAGGATATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * * *
60576811 AAAGG-TCCCACGTAAGACCATGCCAAGACATGAC-ATTAGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
60576864 AAGGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * * *
60576913 AAGGATACCACGTAAGACCATGACAAGTCATGACAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
60576956 GTACCCGTGT
Statistics
Matches: 167, Mismatches: 26, Indels: 20
0.78 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
52 7 0.04
53 38 0.23
54 12 0.07
55 68 0.41
56 4 0.02
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:60576907 original size:108 final size:110
Alignment explanation
Indices: 60576712--60576908 Score: 292
Period size: 108 Copynumber: 1.8 Consensus size: 110
60576702 AGGATACCAT
* * * *
60576712 GTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGACCAT
1 GTAAGACCATGCCAAGACATGACAATTAGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCAT
*
60576777 GTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCAC
66 GTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCAC
*
60576822 GTAAGACCATGCCAAGACATGAC-ATTAGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACCA
1 GTAAGACCATGCCAAGACATGACAATTAGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGACCA
* *
60576884 TGTCGAGACATGGCAATGGTAAGTT
65 TGTCAAGACATGGCAATGATAAGTT
60576909 TCAAAAGGAT
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.62
109 6 0.08
110 21 0.27
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
GTAAGACCATGCCAAGACATGACAATTAGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCAT
GTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCAC
Found at i:60577169 original size:16 final size:16
Alignment explanation
Indices: 60577148--60577178 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60577138 ATAAATTTGA
60577148 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
60577164 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
60577179 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:60593183 original size:47 final size:47
Alignment explanation
Indices: 60593112--60593704 Score: 1015
Period size: 47 Copynumber: 12.6 Consensus size: 47
60593102 CCCTTCGGGA
* * * * * *
60593112 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60593159 CCTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60593206 CTTATCACATATATACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60593253 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60593300 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60593347 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60593394 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60593441 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60593488 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60593535 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTACGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60593582 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60593631 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60593678 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
60593705 TATTCAAATA
Statistics
Matches: 517, Mismatches: 27, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 473 0.91
49 44 0.09
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60599872 original size:43 final size:43
Alignment explanation
Indices: 60599824--60599987 Score: 170
Period size: 43 Copynumber: 3.8 Consensus size: 43
60599814 TATCGAGATG
* *
60599824 TGATTACATGTAAGACCATGCCTAGGACATTGGCATTGTATTA
1 TGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTATTA
** *
60599867 TGATTATGTGTAAGACCATGTCTGGGACATTGGCATCGTATTA
1 TGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTATTA
* * * * * * * *
60599910 TGATTTCGTGTATGACCCTATTTAGGACAGTGGCATCG-ATAAA
1 TGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT-TA
* *
60599953 TGATAACATGTAAGACCATGTCTAGGATA-TGGCAT
1 TGATTACATGTAAGACCATGTCTAGGACATTGGCAT
60599988 TGTGCGAGTT
Statistics
Matches: 98, Mismatches: 22, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
42 8 0.08
43 90 0.92
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.32
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTATTA
Found at i:60607611 original size:43 final size:43
Alignment explanation
Indices: 60607563--60607649 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
60607553 GTTATCGAGA
* *
60607563 TGTGATTACAAGTAAGACCATGTTTGGGACATTGGCATTGTAT
1 TGTGATTACAAGTAAGACCATGTTTGGAACATTGGCATCGTAT
** *
60607606 TGTGATTACGTGTAAGACCATGTTTGGAATATTGGCATCGTAT
1 TGTGATTACAAGTAAGACCATGTTTGGAACATTGGCATCGTAT
60607649 T
1 T
60607650 ATAATTTCGT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.26, C:0.11, G:0.25, T:0.37
Consensus pattern (43 bp):
TGTGATTACAAGTAAGACCATGTTTGGAACATTGGCATCGTAT
Found at i:60607666 original size:43 final size:43
Alignment explanation
Indices: 60607576--60607723 Score: 136
Period size: 43 Copynumber: 3.4 Consensus size: 43
60607566 GATTACAAGT
* * * * *
60607576 AAGACCATGTTTGGGACATTGGCATTGTATTGTGATTACGTGT
1 AAGACCATGTTTGGGATATTGGCATCGTATTATAATTACGTGC
* *
60607619 AAGACCATGTTTGGAATATTGGCATCGTATTATAATTTCGTGC
1 AAGACCATGTTTGGGATATTGGCATCGTATTATAATTACGTGC
* * * * * * *
60607662 AAGACCCTGTCTGGGATAGTGGCATCGGTA-TATGATAACATGT
1 AAGACCATGTTTGGGATATTGGCATC-GTATTATAATTACGTGC
* *
60607705 AAGACCATATCTGGGATAT
1 AAGACCATGTTTGGGATAT
60607724 AGCATTGTGC
Statistics
Matches: 85, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
43 82 0.96
44 3 0.04
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (43 bp):
AAGACCATGTTTGGGATATTGGCATCGTATTATAATTACGTGC
Found at i:60608845 original size:30 final size:30
Alignment explanation
Indices: 60608809--60608881 Score: 128
Period size: 30 Copynumber: 2.4 Consensus size: 30
60608799 ACGGCCTAGA
*
60608809 CACATGGGCGTGTCTACTGGCCTTGTGTGG
1 CACATGGGCGTGTCTACTGGCCGTGTGTGG
60608839 CACATGGGCGTGTCTACTGGCCGTGTGTGG
1 CACATGGGCGTGTCTACTGGCCGTGTGTGG
*
60608869 CACATGGGTGTGT
1 CACATGGGCGTGT
60608882 GGCTGGCCAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.11, C:0.22, G:0.38, T:0.29
Consensus pattern (30 bp):
CACATGGGCGTGTCTACTGGCCGTGTGTGG
Found at i:60612420 original size:26 final size:26
Alignment explanation
Indices: 60612384--60612434 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
60612374 CCATTTTGAA
60612384 TGTCTACACGGCCTACAACACGGGCG
1 TGTCTACACGGCCTACAACACGGGCG
60612410 TGTCTACACGGCCTACAACACGGGC
1 TGTCTACACGGCCTACAACACGGGC
60612435 ATTTCTTCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.35, G:0.25, T:0.16
Consensus pattern (26 bp):
TGTCTACACGGCCTACAACACGGGCG
Found at i:60619956 original size:67 final size:67
Alignment explanation
Indices: 60619834--60620700 Score: 1659
Period size: 67 Copynumber: 13.0 Consensus size: 67
60619824 AGACATTATG
* * * * *
60619834 ATGTAGCTAGGTCGCATGGGTGATACTATGT---GTACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
60619896 AT
66 AT
60619898 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
60619963 AT
66 AT
60619965 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
60620030 AT
66 AT
60620032 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
60620097 AT
66 AT
60620099 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
60620164 AT
66 AT
60620166 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
60620231 AT
66 AT
60620233 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
60620298 AT
66 AT
60620300 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
60620365 AT
66 AT
60620367 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
60620432 AT
66 AT
60620434 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
60620499 AT
66 AT
60620501 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
60620566 AT
66 AT
60620568 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
1 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
60620633 AT
66 AT
*
60620635 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
60620700 A
66 A
60620701 AACTGGCTAG
Statistics
Matches: 794, Mismatches: 6, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
64 27 0.03
67 767 0.97
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.22
Consensus pattern (67 bp):
ATGTAGCTAGGTCGCATGCGTGGTTCCATGTGAAGGACACCATGTAGACAAGAGAGCTACGGGAT
AT
Found at i:60628832 original size:55 final size:55
Alignment explanation
Indices: 60628773--60628888 Score: 153
Period size: 55 Copynumber: 2.1 Consensus size: 55
60628763 CTTGTGCAAC
* **
60628773 ACTGACTT-TAGTGCACGGCCATGACACACGCCGGTGTGGCCCACCCGTGGACAAT
1 ACTGACTTATAG-ACACGGCCATGACACACGCCCATGTGGCCCACCCGTGGACAAT
* * * *
60628828 ACTGACTTATAGACGCGGCTATGGCACACGCCCATGTGGCCTACCCGTGGACAAT
1 ACTGACTTATAGACACGGCCATGACACACGCCCATGTGGCCCACCCGTGGACAAT
60628883 ACTGAC
1 ACTGAC
60628889 ATAAAAGTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
55 50 0.94
56 3 0.06
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (55 bp):
ACTGACTTATAGACACGGCCATGACACACGCCCATGTGGCCCACCCGTGGACAAT
Found at i:60629742 original size:44 final size:47
Alignment explanation
Indices: 60629676--60629794 Score: 129
Period size: 44 Copynumber: 2.6 Consensus size: 47
60629666 TATAAGGGGT
* *
60629676 GATGCATGTCCCAGAAATGTCTTACACTAGC-ACGAAGC-TT-A-GCC
1 GATGCATGTCCCAGACACGTCTTACACTAGCTAC-AAGCATTGAGGCC
* * * * *
60629720 GATGCATGTCCTAGACACGTCTTACTCTGGCTACCATCATTGAGGCC
1 GATGCATGTCCCAGACACGTCTTACACTAGCTACAAGCATTGAGGCC
*
60629767 GATGCATGTCCCAGACACATCTTACACT
1 GATGCATGTCCCAGACACGTCTTACACT
60629795 GGCAGTCATC
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
44 28 0.46
45 4 0.07
46 1 0.02
47 28 0.46
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (47 bp):
GATGCATGTCCCAGACACGTCTTACACTAGCTACAAGCATTGAGGCC
Found at i:60629774 original size:47 final size:47
Alignment explanation
Indices: 60629717--60629888 Score: 163
Period size: 47 Copynumber: 3.7 Consensus size: 47
60629707 ACGAAGCTTA
* * * *
60629717 GCCGATGCATGTCCTAGACACGTCTTACTCTGGCTACCATCATTGAG
1 GCCGATGCATGTCCCAGACACATCTTACACTGGCTATCATCATTGAG
*
60629764 GCCGATGCATGTCCCAGACACATCTTACACTGGC-AGTCATC-TCT-AC
1 GCCGATGCATGTCCCAGACACATCTTACACTGGCTA-TCATCAT-TGAG
* * ** * * *
60629810 GTCGATGCCATGTCCTAGACATGGTCTTACACTGGTTATCAT-AATGTG
1 GCCGATG-CATGTCCCAGACA-CATCTTACACTGGCTATCATCATTGAG
*
60629858 GCTGATGCATGTCCCAGACACATCTTACACT
1 GCCGATGCATGTCCCAGACACATCTTACACT
60629889 AGACCTCGTC
Statistics
Matches: 100, Mismatches: 18, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
46 18 0.18
47 61 0.61
48 20 0.20
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACACATCTTACACTGGCTATCATCATTGAG
Found at i:60629871 original size:94 final size:95
Alignment explanation
Indices: 60629717--60629940 Score: 267
Period size: 94 Copynumber: 2.4 Consensus size: 95
60629707 ACGAAGCTTA
* * *
60629717 GCCGATG-CATGTCCTAGACA-CGTCTTACTCTGGCTACCATCATTGAGGCCGATGCATGTCCCA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTACCATCAATGAGGCCGATGCATGTCCCA
* * *
60629780 GACACATCTTACACT-GGCAGTCATCTCTAC
66 GACACATCTTACACTAGAC-CTCATCTCAAC
* * * * *
60629810 GTCGATGCCATGTCCTAGACATGGTCTTACACTGGTTATCAT-AATGTGGCTGATGCATGTCCCA
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTACCATCAATGAGGCCGATGCATGTCCCA
* *
60629874 GACACATCTTACACTAGACCTCGTCTCAAT
66 GACACATCTTACACTAGACCTCATCTCAAC
* * *
60629904 GCCAATGCCATATCCCAGACATGGTCTTACACTGGCT
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCT
60629941 CTCACATAAC
Statistics
Matches: 110, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
93 6 0.05
94 86 0.78
95 18 0.16
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (95 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTACCATCAATGAGGCCGATGCATGTCCCA
GACACATCTTACACTAGACCTCATCTCAAC
Found at i:60634851 original size:43 final size:43
Alignment explanation
Indices: 60634785--60634870 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
60634775 TCATTTACTC
*
60634785 GGCATTCGCCTAAGTGGCATCTCCCACATTGCGGACACGCTTG
1 GGCATTCGCCTAAGTGGCATCTCCCACATTGCGAACACGCTTG
* * *
60634828 GGCATTCGCCTAATTGGCGTCTCCCACATTGCGAACACTCTTG
1 GGCATTCGCCTAAGTGGCATCTCCCACATTGCGAACACGCTTG
60634871 CTTATCTGGC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.19, C:0.33, G:0.23, T:0.26
Consensus pattern (43 bp):
GGCATTCGCCTAAGTGGCATCTCCCACATTGCGAACACGCTTG
Found at i:60636574 original size:31 final size:31
Alignment explanation
Indices: 60636539--60636602 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
60636529 TCATTTCAAT
60636539 ATACTAATTCCATCCCAAAAGACATCAATTC
1 ATACTAATTCCATCCCAAAAGACATCAATTC
* *
60636570 ATACTAATTGCATCCCAGAAGACATCAATTC
1 ATACTAATTCCATCCCAAAAGACATCAATTC
60636601 AT
1 AT
60636603 TCATAGAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.41, C:0.27, G:0.06, T:0.27
Consensus pattern (31 bp):
ATACTAATTCCATCCCAAAAGACATCAATTC
Found at i:60637362 original size:47 final size:47
Alignment explanation
Indices: 60637161--60637463 Score: 212
Period size: 47 Copynumber: 6.4 Consensus size: 47
60637151 TTGTCAACGC
* *
60637161 CATGTCCCAAACATGGTCTTACACTGGCTATC-TTCATTGAGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTACCATT-ATTGAGGCCGATG
** * * *
60637209 CCATGTCCCAGACATGGTCTTACACTAGG-TTTCATGCA-TAAGTGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACT-GGCTACCAT-TATTGAG-GCCGATG
* * * ***
60637259 CATGTCCCAGACATGTCTTACATTAGC-ACGAACCTT-A-GCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTACCATTATTGAGGCCGATG
* *
60637303 CATGACCCAGACATGTCTTACACTGGCTACCATTATTGAGGACGATG
1 CATGTCCCAGACATGTCTTACACTGGCTACCATTATTGAGGCCGATG
* * * *
60637350 CATGTCCCAGACACGTCTTACACTGG-AACTCATCT-CT-ACGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTAC-CAT-TATTGAGGCCGATG
* * * * *
60637396 CCATGTCCCAGACATGGTCTTACACTGGCTATC-GTAATGTGGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTACCATTATTGAGGCCGATG
*
60637444 CATGTCCCAGACACGTCTTA
1 CATGTCCCAGACATGTCTTA
60637464 TAGTAGCCCT
Statistics
Matches: 202, Mismatches: 36, Indels: 35
0.74 0.13 0.13
Matches are distributed among these distances:
44 30 0.15
45 5 0.02
46 19 0.09
47 64 0.32
48 29 0.14
49 45 0.22
50 10 0.05
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTGGCTACCATTATTGAGGCCGATG
Found at i:60637453 original size:94 final size:93
Alignment explanation
Indices: 60637202--60637519 Score: 342
Period size: 94 Copynumber: 3.4 Consensus size: 93
60637192 CTTCATTGAG
*
60637202 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGGTTTCATGCATAA-GT-GCTGATGCATGTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GG-CT-AT-CATAATGTGGCTGATGCATGTC
* * ** *
60637265 CCAGACATGTCTTACATTAGCACGAACCT-TA
62 CCAGACACGTCTTACACTAGCACTCATCTCTA
* * * *
60637296 GCCGATG-CATGACCCAGACAT-GTCTTACACTGGCTACCATTATTGAGGAC-GATGCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA-TAATGTGG-CTGATGCATGTCCC
* *
60637358 AGACACGTCTTACACTGGAACTCATCTCTA
64 AGACACGTCTTACACTAGCACTCATCTCTA
*
60637388 CGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGTAATGTGGCTGATGCATGTCCCA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCTGATGCATGTCCCA
* * * *
60637453 GACACGTCTTATAGTAGCCCTCATCTCAA
65 GACACGTCTTACACTAGCACTCATCTCTA
* * *
60637482 TGCCAATGCCATGTTCCAGACATGGTCTTATACTGGCT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
60637520 CTCACATAAC
Statistics
Matches: 188, Mismatches: 27, Indels: 18
0.81 0.12 0.08
Matches are distributed among these distances:
88 2 0.01
89 3 0.02
90 2 0.01
91 35 0.19
92 13 0.07
93 21 0.11
94 96 0.51
95 16 0.09
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (93 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCTGATGCATGTCCCAG
ACACGTCTTACACTAGCACTCATCTCTA
Found at i:60653052 original size:37 final size:37
Alignment explanation
Indices: 60652993--60653101 Score: 166
Period size: 37 Copynumber: 2.9 Consensus size: 37
60652983 AGCTCAGACG
*
60652993 AAATCTCCACACGA-AGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACAC-ATAGTCATCGGGTCTTACCCGGACA
* *
60653030 AAATCTCCACACATAGTCATCGGGTCTCACTCGGACA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
*
60653067 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGA
60653102 ATATATTTCC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
36 1 0.02
37 64 0.98
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
Found at i:60653306 original size:50 final size:50
Alignment explanation
Indices: 60653252--60653348 Score: 142
Period size: 50 Copynumber: 1.9 Consensus size: 50
60653242 ATCGCCTACG
60653252 TATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATATA
* ** *
60653302 TATTTCACATTGACCATTCGGCTTTACCAGGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
60653349 TCATCACATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
49 2 0.05
50 40 0.95
ACGTcount: A:0.29, C:0.25, G:0.09, T:0.37
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATATA
Found at i:60653405 original size:47 final size:47
Alignment explanation
Indices: 60653333--60653498 Score: 224
Period size: 47 Copynumber: 3.5 Consensus size: 47
60653323 CTTTACCAGG
* * *
60653333 TATGCATATCTCATATTCATCACATTGGCCATTCAGCCTTATCACACA
1 TATGCAT-GCTCACATTCATCACATTGGCCATTCAGCCTTATCACATA
*
60653381 TATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 TATGCATGCTCACATTCATCACATTGGCCATTCAGCCTTATCACATA
* * * *
60653428 TGTGCATGTTCACATTCATCACATTCGCCATTCAGCCTTATCTCATA
1 TATGCATGCTCACATTCATCACATTGGCCATTCAGCCTTATCACATA
* **
60653475 TATACATATTCACATTCATCACAT
1 TATGCATGCTCACATTCATCACAT
60653499 AAAATCCTAA
Statistics
Matches: 106, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 99 0.93
48 7 0.07
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
TATGCATGCTCACATTCATCACATTGGCCATTCAGCCTTATCACATA
Found at i:60659819 original size:3 final size:3
Alignment explanation
Indices: 60659811--60659841 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
60659801 TATGTAGCTT
60659811 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
60659842 CAACAACAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:60660305 original size:21 final size:21
Alignment explanation
Indices: 60660281--60660334 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
60660271 ATAACATAAT
**
60660281 ATACTTAACATAATATGGATC
1 ATACTTAACATAATACAGATC
*
60660302 ATACTTACCATAATACAGATC
1 ATACTTAACATAATACAGATC
*
60660323 ATACTTAGCATA
1 ATACTTAACATA
60660335 TAAATCATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (21 bp):
ATACTTAACATAATACAGATC
Found at i:60663731 original size:16 final size:16
Alignment explanation
Indices: 60663710--60663780 Score: 108
Period size: 16 Copynumber: 4.4 Consensus size: 16
60663700 GTTTGGTTCA
*
60663710 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
60663726 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
60663742 CTGTAACT-GAATAGAG
1 CTGTAA-TGGAATAGAG
60663758 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
60663774 CTGTAAT
1 CTGTAAT
60663781 CAGTAATTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
15 1 0.02
16 49 0.96
17 1 0.02
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.28
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:60664069 original size:56 final size:57
Alignment explanation
Indices: 60663953--60664077 Score: 141
Period size: 59 Copynumber: 2.2 Consensus size: 57
60663943 ATTAAATAAG
*
60663953 ATTATTATTGAAAATAATTTAATAATAAACAATAAATAATTTAACCATATTTTAACATA
1 ATTATTATT-AAAATAATTTAATAATAAACAAT-AATAATTTAACCATATCTTAACATA
* * *
60664012 ATTATTATTAAATATAATTTAATAA-AAA-AAT-TTAATTTAATAGCAT-TCTTAATATA
1 ATTATTATTAAA-ATAATTTAATAATAAACAATAATAATTT-A-ACCATATCTTAACATA
60664068 ATTATTATTA
1 ATTATTATTA
60664078 TATGAATTAA
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
55 6 0.10
56 19 0.32
57 7 0.12
58 6 0.10
59 21 0.36
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (57 bp):
ATTATTATTAAAATAATTTAATAATAAACAATAATAATTTAACCATATCTTAACATA
Found at i:60664524 original size:43 final size:43
Alignment explanation
Indices: 60664463--60664547 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
60664453 TACAAATACA
*
60664463 TAAGGCAACCAATTTGATGCCTTTTCCAACTTGATACCCAACC
1 TAAGGCAAACAATTTGATGCCTTTTCCAACTTGATACCCAACC
* * *
60664506 TAAGGCAAACAATTTGATGTCTTTTCTAACTTGATAGCCAAC
1 TAAGGCAAACAATTTGATGCCTTTTCCAACTTGATACCCAAC
60664548 TAATTCCTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.31
Consensus pattern (43 bp):
TAAGGCAAACAATTTGATGCCTTTTCCAACTTGATACCCAACC
Found at i:60664577 original size:31 final size:31
Alignment explanation
Indices: 60664539--60664602 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
60664529 TTCTAACTTG
60664539 ATAGCCAACTAATTCCTGATTAAACCAACCA
1 ATAGCCAACTAATTCCTGATTAAACCAACCA
60664570 ATAGCCAACTAATTCCTGATTAAACCAACCA
1 ATAGCCAACTAATTCCTGATTAAACCAACCA
60664601 AT
1 AT
60664603 TTGATCAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.42, C:0.28, G:0.06, T:0.23
Consensus pattern (31 bp):
ATAGCCAACTAATTCCTGATTAAACCAACCA
Found at i:60668780 original size:68 final size:70
Alignment explanation
Indices: 60668662--60668820 Score: 223
Period size: 68 Copynumber: 2.3 Consensus size: 70
60668652 GGATAGAAGC
*
60668662 ATGAAAAAGAGAGAGATGGTTAGAAGGAAATGGGAAGAGGAATGAAAAAAAGAAGATGATTCAGA
1 ATGAAAAAGAG-GAGAAGGTTAGAAGGAAATGGG-AGAGGAATGAAAAAAAGAAGATGATTCAGA
60668727 CGTGACA
64 CGTGACA
* * *
60668734 ATGAAAAAGAGGAGAAGGTTCGAAGGAAATGGG-GA-GAATGAAAAAAAGAAGTTGCTTCAGACG
1 ATGAAAAAGAGGAGAAGGTTAGAAGGAAATGGGAGAGGAATGAAAAAAAGAAGATGATTCAGACG
*
60668797 TGAGA
66 TGACA
*
60668802 ACGAAAAAGAGGGAGAAGG
1 ATGAAAAAGA-GGAGAAGG
60668821 GTAAAGTTGA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
68 39 0.49
69 10 0.12
71 20 0.25
72 11 0.14
ACGTcount: A:0.48, C:0.05, G:0.34, T:0.13
Consensus pattern (70 bp):
ATGAAAAAGAGGAGAAGGTTAGAAGGAAATGGGAGAGGAATGAAAAAAAGAAGATGATTCAGACG
TGACA
Found at i:60682807 original size:10 final size:10
Alignment explanation
Indices: 60682783--60682815 Score: 52
Period size: 9 Copynumber: 3.5 Consensus size: 10
60682773 TTTAATTATT
60682783 ATTTTTAATA
1 ATTTTTAATA
60682793 A-TTTTAATA
1 ATTTTTAATA
60682802 ATTTTTAA-A
1 ATTTTTAATA
60682811 ATTTT
1 ATTTT
60682816 AAATTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 15 0.68
10 7 0.32
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:60682817 original size:8 final size:8
Alignment explanation
Indices: 60682785--60682826 Score: 50
Period size: 9 Copynumber: 5.0 Consensus size: 8
60682775 TAATTATTAT
60682785 TTTTAATAA
1 TTTTAA-AA
60682794 TTTTAATAA
1 TTTTAA-AA
60682803 TTTTTAAAA
1 -TTTTAAAA
60682812 TTTT-AAA
1 TTTTAAAA
60682819 TTTTAAAA
1 TTTTAAAA
60682827 AAGTTAATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.23
8 7 0.23
9 11 0.35
10 6 0.19
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (8 bp):
TTTTAAAA
Found at i:60691826 original size:46 final size:46
Alignment explanation
Indices: 60691769--60691914 Score: 132
Period size: 46 Copynumber: 3.0 Consensus size: 46
60691759 ACACACCGTA
*
60691769 GCCATAGCCCAGCCATGGTCTTACACGAATCACATATCACACTGAT
1 GCCATAGCCCAGCTATGGTCTTACACGAATCACATATCACACTGAT
* * * * **
60691815 GCCATATCCCAGATATGGTCTTATACAGAAGCATGTAATCACATATCTCTGAT
1 GCCATAGCCCAGCTATGGTCTTACAC-GAATCACAT-ATCAC--A---CTGAT
* *
60691868 GCCATAGCCCAACTATGGTCTTACAC-AGATCACATATCACATTGAT
1 GCCATAGCCCAGCTATGGTCTTACACGA-ATCACATATCACACTGAT
60691914 G
1 G
60691915 TCATGGTCCA
Statistics
Matches: 77, Mismatches: 15, Indels: 16
0.71 0.14 0.15
Matches are distributed among these distances:
46 27 0.35
47 6 0.08
48 5 0.06
49 1 0.01
50 1 0.01
51 6 0.08
52 4 0.05
53 27 0.35
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (46 bp):
GCCATAGCCCAGCTATGGTCTTACACGAATCACATATCACACTGAT
Found at i:60693069 original size:23 final size:22
Alignment explanation
Indices: 60692997--60693084 Score: 74
Period size: 21 Copynumber: 4.1 Consensus size: 22
60692987 TACCTGATCA
* *
60692997 GAATACGATACATAA-GTGCCT
1 GAATACGACACACAAGGTGCCT
* *
60693018 GAA-ACGACACACGAGGTGTCT
1 GAATACGACACACAAGGTGCCT
* *
60693039 G-CTGCGACACACAAGGTGCCT
1 GAATACGACACACAAGGTGCCT
* *
60693060 GAAATACGACACATAAAGTGCCT
1 G-AATACGACACACAAGGTGCCT
60693083 GA
1 GA
60693085 TCAGTAAAGC
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
20 8 0.16
21 25 0.49
22 1 0.02
23 17 0.33
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (22 bp):
GAATACGACACACAAGGTGCCT
Found at i:60693344 original size:23 final size:23
Alignment explanation
Indices: 60693255--60693345 Score: 67
Period size: 23 Copynumber: 3.7 Consensus size: 23
60693245 GATTCCATCC
* *
60693255 AAACACACCAAAAT-GTCCAACCA
1 AAACACACCAAAATAATCC-TCCA
* **
60693278 AAAGACACCAGTATAATCCTCCA
1 AAACACACCAAAATAATCCTCCA
*
60693301 AAACACACCAGTATCATATAATCCTCCT
1 AAACACACCA--A--A-ATAATCCTCCA
60693329 AAACACACCAAAATAAT
1 AAACACACCAAAATAAT
60693346 ATAATCCATC
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
23 28 0.53
24 4 0.08
26 1 0.02
28 20 0.38
ACGTcount: A:0.48, C:0.31, G:0.04, T:0.16
Consensus pattern (23 bp):
AAACACACCAAAATAATCCTCCA
Found at i:60693366 original size:29 final size:28
Alignment explanation
Indices: 60693289--60693372 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
60693279 AAGACACCAG
* *
60693289 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
* *
60693317 TATAATCCTCCTAAACACACCAAAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
60693345 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
60693373 GCACAAAGTG
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 32 0.65
29 17 0.35
ACGTcount: A:0.48, C:0.30, G:0.02, T:0.20
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:60699587 original size:28 final size:28
Alignment explanation
Indices: 60699549--60699655 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
60699539 GAATCATTCG
* *
60699549 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
60699577 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
60699605 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
60699633 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
60699656 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:60703308 original size:27 final size:27
Alignment explanation
Indices: 60703278--60703331 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
60703268 TTATTATTGA
60703278 ATTAATGATTAA-TTTCATAGTTTACTT
1 ATTAATGATTAATTTTC-TAGTTTACTT
60703305 ATTAATGATTAATTTTCTAGTTTACTT
1 ATTAATGATTAATTTTCTAGTTTACTT
60703332 TCATAACTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.54
Consensus pattern (27 bp):
ATTAATGATTAATTTTCTAGTTTACTT
Found at i:60707224 original size:22 final size:23
Alignment explanation
Indices: 60707193--60707261 Score: 81
Period size: 22 Copynumber: 3.1 Consensus size: 23
60707183 TATGCACTAT
*
60707193 TAAACAGAGAGCACTAAA-GTGT
1 TAAACAGAGAGCACTAAATGTGC
* *
60707215 TATACAGAGAACAC-AAATGTGC
1 TAAACAGAGAGCACTAAATGTGC
*
60707237 TAAACGGAGAGCACT-AATGTGC
1 TAAACAGAGAGCACTAAATGTGC
60707259 TAA
1 TAA
60707262 TAATTAGAGA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 3 0.08
22 36 0.92
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (23 bp):
TAAACAGAGAGCACTAAATGTGC
Found at i:60707277 original size:25 final size:25
Alignment explanation
Indices: 60707243--60707300 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
60707233 GTGCTAAACG
* *
60707243 GAGAGCACTAATGTGCTAATAATTA
1 GAGAGCACTAACGTACTAATAATTA
60707268 GAGAGCACTAACGTACTAATAATTA
1 GAGAGCACTAACGTACTAATAATTA
60707293 GAGAGCAC
1 GAGAGCAC
60707301 GCTAAGGTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.22
Consensus pattern (25 bp):
GAGAGCACTAACGTACTAATAATTA
Found at i:60707611 original size:26 final size:26
Alignment explanation
Indices: 60707578--60707631 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
60707568 TAATTTAGTC
*
60707578 ATTAGCACAATATTTCATGTAGCAAT
1 ATTAGCACAAAATTTCATGTAGCAAT
60707604 ATTAGCACAAAATTTCATGTAGCAAT
1 ATTAGCACAAAATTTCATGTAGCAAT
60707630 AT
1 AT
60707632 ATTTTACTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33
Consensus pattern (26 bp):
ATTAGCACAAAATTTCATGTAGCAAT
Found at i:60712689 original size:42 final size:42
Alignment explanation
Indices: 60712585--60712743 Score: 203
Period size: 42 Copynumber: 3.8 Consensus size: 42
60712575 TACCATACCA
* * * ** *
60712585 ATGCCATATCCCA-ATATGGCCTTACATGTAATCTTGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
60712626 ATGCCAATAACCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
60712669 ATGTCATATCCCAGATATGGTCTTACACGAAATCTTATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
60712711 ATGCCATATCCCAGATATGGTCTTACACGAAAT
1 ATGCCATATCCCAGATATGGTCTTACACGAAAT
60712744 ATCAATAACC
Statistics
Matches: 101, Mismatches: 15, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
41 5 0.05
42 72 0.71
43 24 0.24
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:60715447 original size:38 final size:39
Alignment explanation
Indices: 60715396--60715489 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 39
60715386 CCATCTCCGA
* * *
60715396 CCAACCCAACACACCA-TGTGGGGATAGAATCGACCCAC
1 CCAACCCTACACACCAGTGTAGGGATAGAATCAACCCAC
* * *
60715434 CCAACCCTACACACCAAGTTTAGGGATATAATCAACCCAT
1 CCAACCCTACACACC-AGTGTAGGGATAGAATCAACCCAC
*
60715474 CCAACCCTACATACCA
1 CCAACCCTACACACCA
60715490 AAAGGTACCG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
38 14 0.30
39 2 0.04
40 31 0.66
ACGTcount: A:0.36, C:0.37, G:0.12, T:0.15
Consensus pattern (39 bp):
CCAACCCTACACACCAGTGTAGGGATAGAATCAACCCAC
Found at i:60718030 original size:18 final size:16
Alignment explanation
Indices: 60717998--60718036 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
60717988 TTAGTAAATA
60717998 AATAATAAAATGTTAT
1 AATAATAAAATGTTAT
*
60718014 TATAATAATATATGTTAT
1 AATAATAA-A-ATGTTAT
60718032 AATAA
1 AATAA
60718037 AATTAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 7 0.37
17 1 0.05
18 11 0.58
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (16 bp):
AATAATAAAATGTTAT
Found at i:60719079 original size:43 final size:42
Alignment explanation
Indices: 60718925--60719080 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 42
60718915 TGTGTTCTCG
** *
60718925 TGTAAGACCACATCTAGGACGTTGGCATCGATATGTGATTTC-
1 TGTAAGACCATGTCTGGGACGTTGGCATCGA-ATGTGATTTCA
* *
60718967 -GATAAGACCATGTCTGGGACATTAGCATCGTAATTGTGA-TTCA
1 TG-TAAGACCATGTCTGGGACGTTGGCATCG-AA-TGTGATTTCA
* *
60719010 TGTAAGACCTTGTTTGGGACAG-TGGCATCGACATGTGATTTCA
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCGA-ATGTGATTTCA
60719053 TGTAAGACCATGTCTGGGACGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
60719081 TGTACGATAT
Statistics
Matches: 94, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
41 1 0.01
42 34 0.36
43 58 0.62
44 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGAATGTGATTTCA
Found at i:60725574 original size:26 final size:26
Alignment explanation
Indices: 60725543--60725598 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
60725533 TGACATGCCC
60725543 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
60725569 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
60725595 ATCA
1 ATCA
60725599 ATTTGTACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:60727104 original size:45 final size:45
Alignment explanation
Indices: 60727039--60727129 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
60727029 TGTCAGACAT
* *
60727039 TTCCCTAAAAACTCCTTTACTTCTTATTTAAGTCCAGGCCACCAG
1 TTCCCTAAAAACTCCGTTACTTCTCATTTAAGTCCAGGCCACCAG
* *
60727084 TTCCCTACAAACTCCGTTACTTCTCGTTTAAGTCCAGGCCACCAG
1 TTCCCTAAAAACTCCGTTACTTCTCATTTAAGTCCAGGCCACCAG
60727129 T
1 T
60727130 ACAATTCTCG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.24, C:0.33, G:0.11, T:0.32
Consensus pattern (45 bp):
TTCCCTAAAAACTCCGTTACTTCTCATTTAAGTCCAGGCCACCAG
Found at i:60730467 original size:12 final size:12
Alignment explanation
Indices: 60730450--60730480 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
60730440 AGTACTACCT
60730450 CGGCCTCGACCA
1 CGGCCTCGACCA
60730462 CGGCCTCGACCA
1 CGGCCTCGACCA
*
60730474 TGGCCTC
1 CGGCCTC
60730481 TTCCCCAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.48, G:0.26, T:0.13
Consensus pattern (12 bp):
CGGCCTCGACCA
Found at i:60733654 original size:26 final size:26
Alignment explanation
Indices: 60733625--60733680 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
60733615 TAAAATGCCC
60733625 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
60733651 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
60733677 ATCA
1 ATCA
60733681 ATTTGTACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:60741573 original size:35 final size:34
Alignment explanation
Indices: 60741456--60741573 Score: 87
Period size: 35 Copynumber: 3.4 Consensus size: 34
60741446 TGTACATATA
* * *
60741456 TGATGATATATTGTACCTGTGTCTTTGGTCGCAT-G
1 TGATGATATATTGTACTTGTATATTTGG-C-CATAG
* ** * *
60741491 TGATGTTATATTAAACTTGAATATTTGACTACAT-G
1 TGATGATATATTGTACTTGTATATTTGGC--CATAG
* *
60741526 TGATGTTCTATTGTACTTGTATATTTGGCCATACG
1 TGATGATATATTGTACTTGTATATTTGGCCATA-G
60741561 TGATGATATATTG
1 TGATGATATATTG
60741574 GATATTGAAT
Statistics
Matches: 64, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
33 3 0.05
34 1 0.02
35 60 0.94
ACGTcount: A:0.25, C:0.11, G:0.20, T:0.44
Consensus pattern (34 bp):
TGATGATATATTGTACTTGTATATTTGGCCATAG
Found at i:60749124 original size:35 final size:35
Alignment explanation
Indices: 60749079--60749173 Score: 104
Period size: 35 Copynumber: 2.8 Consensus size: 35
60749069 TGTACATATA
* * * *
60749079 TGATGATATATTGTACTTGTATCTTTGGCCACATG
1 TGATGTTATATTGTACTTGAATATTTGACCACATG
** *
60749114 TGATGTTATATTAAACTTGAATATTTGACTACATG
1 TGATGTTATATTGTACTTGAATATTTGACCACATG
*
60749149 TGATGTTTTATTGTACTT--ATATTTG
1 TGATGTTATATTGTACTTGAATATTTG
60749174 GTCGTATGTG
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
33 7 0.14
35 43 0.86
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.47
Consensus pattern (35 bp):
TGATGTTATATTGTACTTGAATATTTGACCACATG
Found at i:60755545 original size:50 final size:49
Alignment explanation
Indices: 60755424--60755599 Score: 194
Period size: 50 Copynumber: 3.5 Consensus size: 49
60755414 TGAGGTCGCA
* * * *
60755424 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTGGGTCACG
**
60755475 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGGGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-GGGTCACG
* * *
60755525 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTGGGTCACG
* *
60755574 TGTGTAATACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
60755600 TGCATACCAG
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 29 0.27
50 43 0.40
51 31 0.29
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTGGGTCACG
Found at i:60760676 original size:24 final size:24
Alignment explanation
Indices: 60760648--60760702 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
60760638 AGTAGCTATG
*
60760648 GTCGTGGTTGAGTAGGACATGGCA
1 GTCGTGGTTGAGCAGGACATGGCA
60760672 GTCGTGGTTGAGCAGGACATGGCA
1 GTCGTGGTTGAGCAGGACATGGCA
60760696 GTCGTGG
1 GTCGTGG
60760703 AGAACCTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.18, C:0.15, G:0.44, T:0.24
Consensus pattern (24 bp):
GTCGTGGTTGAGCAGGACATGGCA
Found at i:60760924 original size:12 final size:12
Alignment explanation
Indices: 60760909--60760947 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
60760899 AAAAGTACTT
60760909 TAAAGATATAAA
1 TAAAGATATAAA
60760921 TAAAGATA-AAA
1 TAAAGATATAAA
*
60760932 GTAAAAATATAAA
1 -TAAAGATATAAA
60760945 TAA
1 TAA
60760948 TAAATAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
11 3 0.12
12 18 0.75
13 3 0.12
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (12 bp):
TAAAGATATAAA
Found at i:60760936 original size:24 final size:25
Alignment explanation
Indices: 60760909--60760956 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
60760899 AAAAGTACTT
* *
60760909 TAAAGATATAAATAA-AGATAAAAG
1 TAAAAATATAAATAATAAATAAAAG
60760933 TAAAAATATAAATAATAAATAAAA
1 TAAAAATATAAATAATAAATAAAA
60760957 AGTCTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (25 bp):
TAAAAATATAAATAATAAATAAAAG
Found at i:60764921 original size:20 final size:20
Alignment explanation
Indices: 60764896--60764935 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
60764886 TCCTCCAACC
60764896 TGCATTATATGTGTTACTAT
1 TGCATTATATGTGTTACTAT
60764916 TGCATTATATGTGTTACTAT
1 TGCATTATATGTGTTACTAT
60764936 ATGGGCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (20 bp):
TGCATTATATGTGTTACTAT
Found at i:60770145 original size:21 final size:21
Alignment explanation
Indices: 60770121--60770160 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
60770111 TTTTTTTAGA
60770121 TTTTAATTTTTTTTCCAAAAT
1 TTTTAATTTTTTTTCCAAAAT
** *
60770142 TTTTGGTTTTTTTTTCAAA
1 TTTTAATTTTTTTTCCAAA
60770161 TTGAGGTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.65
Consensus pattern (21 bp):
TTTTAATTTTTTTTCCAAAAT
Found at i:60781996 original size:12 final size:12
Alignment explanation
Indices: 60781979--60782003 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
60781969 TGTGAAGAAT
60781979 AAAATAAAATAA
1 AAAATAAAATAA
60781991 AAAATAAAATAA
1 AAAATAAAATAA
60782003 A
1 A
60782004 GAACGCACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:60788607 original size:5 final size:5
Alignment explanation
Indices: 60788597--60788625 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
60788587 CCAATTTGTG
60788597 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
60788626 GAACACACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:60791478 original size:73 final size:73
Alignment explanation
Indices: 60791359--60791502 Score: 225
Period size: 73 Copynumber: 2.0 Consensus size: 73
60791349 TTTTTGATTT
* ** *
60791359 GGGTCAGCCAATTGATGGTTCTGGTCAGCCCAATTAGTGGCTGGTTCGGCCCACTCCATTCAGTT
1 GGGTCAGCCAATGGACAGTTCTGGTCAGCCCAATTAGTGGCTGGTTCGGCCCACTCCATTCAGTA
60791424 CAACCATG
66 CAACCATG
* * *
60791432 GGGTCAGCCAATGGACAGTTCTGGTCAGCCTAATTAGTGGCTGGTTCGGCTCACTCCATTCGGTA
1 GGGTCAGCCAATGGACAGTTCTGGTCAGCCCAATTAGTGGCTGGTTCGGCCCACTCCATTCAGTA
60791497 CAACCA
66 CAACCA
60791503 GTGCGGTTCA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 64 1.00
ACGTcount: A:0.20, C:0.27, G:0.26, T:0.26
Consensus pattern (73 bp):
GGGTCAGCCAATGGACAGTTCTGGTCAGCCCAATTAGTGGCTGGTTCGGCCCACTCCATTCAGTA
CAACCATG
Done.