Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95480121
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.31
Warning! 2980117 characters in sequence are not A, C, G, or T
File 180 of 284
Found at i:60808340 original size:17 final size:17
Alignment explanation
Indices: 60808311--60808343 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
60808301 AGTTTAAGGG
60808311 CAAAAATGTATTTTTTC
1 CAAAAATGTATTTTTTC
60808328 CAAAATATG-ATTTTTT
1 CAAAA-ATGTATTTTTT
60808344 GATCACATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (17 bp):
CAAAAATGTATTTTTTC
Found at i:60809952 original size:47 final size:47
Alignment explanation
Indices: 60809840--60809962 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 47
60809830 AGGATTCTAT
* * * * * *
60809840 GTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGAT
1 GTGATGGATGTGAA-AGTGTATATATGTGACAAGGCCGAATGGCCAAC
* * *
60809887 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 GTGATGGATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAAC
*
60809934 GTGATGGATGTGAAAGTGTATAAATGTGA
1 GTGATGGATGTGAAAGTGTATATATGTGA
60809963 TAAGTCCCGA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
46 1 0.02
47 63 0.98
ACGTcount: A:0.32, C:0.10, G:0.33, T:0.26
Consensus pattern (47 bp):
GTGATGGATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAAC
Found at i:60810141 original size:37 final size:37
Alignment explanation
Indices: 60810085--60810163 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
60810075 CCGAGCTCTA
* * * *
60810085 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
*
60810122 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
60810159 AAGAC
1 AAGAC
60810164 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:60816304 original size:18 final size:18
Alignment explanation
Indices: 60816281--60816324 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 18
60816271 GTCTATATAG
60816281 AAAAAAT-AATCGTTCGAA
1 AAAAAATGAATCGTT-GAA
60816299 AAAAAATGAATCGTTGAA
1 AAAAAATGAATCGTTGAA
60816317 AAAAAATG
1 AAAAAATG
60816325 GTGACAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.59, C:0.07, G:0.14, T:0.20
Consensus pattern (18 bp):
AAAAAATGAATCGTTGAA
Found at i:60819155 original size:20 final size:20
Alignment explanation
Indices: 60819120--60819174 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
60819110 TGAATTGTTG
*
60819120 AATATC-ATTAAAATA-TATT
1 AATATCAATTCAAATATTA-T
60819139 AATATCAATTCAAATATTAT
1 AATATCAATTCAAATATTAT
*
60819159 AATAGACAATTCAAAT
1 AATA-TCAATTCAAAT
60819175 CAAAACCTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.19
20 13 0.42
21 12 0.39
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.36
Consensus pattern (20 bp):
AATATCAATTCAAATATTAT
Found at i:60821590 original size:22 final size:22
Alignment explanation
Indices: 60821565--60821608 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
60821555 CAAATCTGTC
60821565 AAAAATAACCAAAATTAATTAT
1 AAAAATAACCAAAATTAATTAT
* ** *
60821587 AAAATTAATTAAAATTCATTAT
1 AAAAATAACCAAAATTAATTAT
60821609 GTTAATAATT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (22 bp):
AAAAATAACCAAAATTAATTAT
Found at i:60825262 original size:18 final size:18
Alignment explanation
Indices: 60825236--60825270 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
60825226 GAGTTAAACA
60825236 AATCAAGTTATTCGAGTT
1 AATCAAGTTATTCGAGTT
*
60825254 AATCGAGTTATTCGAGT
1 AATCAAGTTATTCGAGT
60825271 CAACTCAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.37
Consensus pattern (18 bp):
AATCAAGTTATTCGAGTT
Found at i:60833509 original size:48 final size:48
Alignment explanation
Indices: 60833425--60833518 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
60833415 AGGGAATTCT
* * *
60833425 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGGCTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
60833473 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
60833519 AGCCAAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 2 0.05
48 39 0.95
ACGTcount: A:0.18, C:0.13, G:0.29, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:60834096 original size:96 final size:96
Alignment explanation
Indices: 60833928--60834113 Score: 275
Period size: 96 Copynumber: 1.9 Consensus size: 96
60833918 ACTCTATTTA
* * * *
60833928 TTTATTTTTACTTAGGAATATATTGAACCTTTTGATGCGAAGAGAGATGACAGCCAAGCACCCCA
1 TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCA
60833993 CCACGGTTACTCAGCCCAACACATTCCTAATT
66 CCACGGTTACTCAG-CCAACACATTCCTAATT
* * * *
60834025 TTTATTTTT-CTTAAGAACATATCGAACCTTTTGACGTGAAGAGGGATGATAGCCAAGCACCTCA
1 TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCA
*
60834089 CCCCGGTTACTCAGCCAACACATTC
66 CCACGGTTACTCAGCCAACACATTC
60834114 TTAAAAATTA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 11 0.14
96 60 0.75
97 9 0.11
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (96 bp):
TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCA
CCACGGTTACTCAGCCAACACATTCCTAATT
Found at i:60834871 original size:7 final size:7
Alignment explanation
Indices: 60834859--60834895 Score: 67
Period size: 7 Copynumber: 5.4 Consensus size: 7
60834849 TAATATCTGA
60834859 AAATAAT
1 AAATAAT
60834866 AAATAAT
1 AAATAAT
60834873 AAATAAT
1 AAATAAT
60834880 AAATAAT
1 AAATAAT
60834887 AAA-AAT
1 AAATAAT
60834893 AAA
1 AAA
60834896 AATTGGGCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 6 0.20
7 24 0.80
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAATAAT
Found at i:60839143 original size:17 final size:17
Alignment explanation
Indices: 60839121--60839154 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
60839111 ATCGTGTTGT
60839121 GGGAAACTTGCATACAA
1 GGGAAACTTGCATACAA
60839138 GGGAAACTTGCATACAA
1 GGGAAACTTGCATACAA
60839155 CTTCTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.18
Consensus pattern (17 bp):
GGGAAACTTGCATACAA
Found at i:60840118 original size:22 final size:21
Alignment explanation
Indices: 60840093--60840133 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
60840083 TGAAAAATAA
*
60840093 AAAAATAAAATTAAGAATTTGG
1 AAAAATAAAAAT-AGAATTTGG
60840115 AAAAATAAAAATAGAATTT
1 AAAAATAAAAATAGAATTT
60840134 AAAGTGAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (21 bp):
AAAAATAAAAATAGAATTTGG
Found at i:60840165 original size:17 final size:18
Alignment explanation
Indices: 60840145--60840178 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
60840135 AAGTGAATTG
60840145 AAATTG-AGAAATTAAAT
1 AAATTGCAGAAATTAAAT
60840162 AAATTGCAGAAATTAAA
1 AAATTGCAGAAATTAAA
60840179 ATGGAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.59, C:0.03, G:0.12, T:0.26
Consensus pattern (18 bp):
AAATTGCAGAAATTAAAT
Found at i:60840911 original size:10 final size:10
Alignment explanation
Indices: 60840892--60840951 Score: 88
Period size: 10 Copynumber: 6.0 Consensus size: 10
60840882 TGAAATTCTA
60840892 AAAGATAAAT
1 AAAGATAAAT
60840902 ACAA-ATAAAT
1 A-AAGATAAAT
60840912 AAAGATAAAT
1 AAAGATAAAT
60840922 AAAGATAAAT
1 AAAGATAAAT
60840932 AAAGATAAAT
1 AAAGATAAAT
60840942 GAAA-ATAAAT
1 -AAAGATAAAT
60840952 CCTAGAATTA
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
9 2 0.04
10 40 0.85
11 5 0.11
ACGTcount: A:0.70, C:0.02, G:0.08, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:60842674 original size:22 final size:22
Alignment explanation
Indices: 60842635--60842686 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
60842625 CACTAGGAAC
60842635 TATGTGATCTAAGCTCA-TGAGA
1 TATGTGATCTAAGCTCATTG-GA
* * *
60842657 TATGTGGTCTGAGGTCATTGGA
1 TATGTGATCTAAGCTCATTGGA
60842679 TATGTGAT
1 TATGTGAT
60842687 ATATGTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.25, C:0.10, G:0.29, T:0.37
Consensus pattern (22 bp):
TATGTGATCTAAGCTCATTGGA
Found at i:60847668 original size:46 final size:46
Alignment explanation
Indices: 60847601--60847914 Score: 472
Period size: 46 Copynumber: 6.8 Consensus size: 46
60847591 TGTAACCCGC
* * * * *
60847601 CCATAAGTGACCTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
60847647 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
60847693 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
60847740 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
60847786 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
60847832 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
60847878 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60847915 TGCTCAACCA
Statistics
Matches: 247, Mismatches: 14, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
43 1 0.00
44 2 0.01
46 207 0.84
47 32 0.13
49 4 0.02
50 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:60851714 original size:31 final size:31
Alignment explanation
Indices: 60851676--60851735 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
60851666 TCCATATTTC
60851676 ATATTTCATAACACTGGGCCGAAGCCTTTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTTTT
**
60851707 ATATTTCATATTACTGGGCCGAAGCCTTT
1 ATATTTCATAACACTGGGCCGAAGCCTTT
60851736 ACTGTAAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.37
Consensus pattern (31 bp):
ATATTTCATAACACTGGGCCGAAGCCTTTTT
Found at i:60851998 original size:23 final size:23
Alignment explanation
Indices: 60851944--60852067 Score: 194
Period size: 23 Copynumber: 5.3 Consensus size: 23
60851934 GGCCTAGCCT
*
60851944 CTTTTAATAACTGGGGCAAAAAGCC
1 CTTTTAATAACTGGGGC-ATAAG-C
60851969 CTTTTAATAACTGGGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGC
*
60851992 CTTTTAATAACTGTGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGC
60852015 CTTTTAATAACTGGGGCATAAGC
1 CTTTTAATAACTGGGGCATAAGC
*
60852038 CCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAG-C
60852062 CTTTTA
1 CTTTTA
60852068 CACTTCCTCC
Statistics
Matches: 93, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
23 66 0.71
24 10 0.11
25 17 0.18
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (23 bp):
CTTTTAATAACTGGGGCATAAGC
Found at i:60852141 original size:20 final size:20
Alignment explanation
Indices: 60852116--60852182 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
60852106 TTATGAATAC
60852116 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
**
60852136 ATCATGTGCATAGAATACAT
1 ATCATGTGCATATCATACAT
*
60852156 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
60852176 ACCATGT
1 ATCATGT
60852183 TTACTAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:60852816 original size:37 final size:39
Alignment explanation
Indices: 60852750--60852830 Score: 130
Period size: 37 Copynumber: 2.1 Consensus size: 39
60852740 GAGGGTTCTT
*
60852750 TACACACCTTTTTGGCGATATTCCTTCGACGAGATCCCC
1 TACACACCTGTTTGGCGATATTCCTTCGACGAGATCCCC
*
60852789 TACAC-CCTGTTTGGCGATATTCC-TCGACGAGATCTCC
1 TACACACCTGTTTGGCGATATTCCTTCGACGAGATCCCC
60852826 TACAC
1 TACAC
60852831 GATTTCTCCT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
37 18 0.45
38 17 0.43
39 5 0.12
ACGTcount: A:0.21, C:0.33, G:0.16, T:0.30
Consensus pattern (39 bp):
TACACACCTGTTTGGCGATATTCCTTCGACGAGATCCCC
Found at i:60859869 original size:31 final size:31
Alignment explanation
Indices: 60859831--60859890 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
60859821 TTCATATTTC
*
60859831 ATATTTCATAACACTGGGCCGAAGCCTTTTT
1 ATATTTCATAACACTAGGCCGAAGCCTTTTT
**
60859862 ATATTTCATATTACTAGGCCGAAGCCTTT
1 ATATTTCATAACACTAGGCCGAAGCCTTT
60859891 ACTGTAAACG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (31 bp):
ATATTTCATAACACTAGGCCGAAGCCTTTTT
Found at i:60860151 original size:24 final size:24
Alignment explanation
Indices: 60860080--60860152 Score: 94
Period size: 25 Copynumber: 3.0 Consensus size: 24
60860070 CTGCTTTCGT
*
60860080 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
60860105 ATAACTGGGGCAAAAAGCCCTTTTA
1 ATAACTGGGGC-ATAAGCCCTTTTA
60860130 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60860153 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
24 14 0.33
25 25 0.58
26 4 0.09
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:60860227 original size:20 final size:20
Alignment explanation
Indices: 60860202--60860268 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
60860192 TTATGAATAC
60860202 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
60860222 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
60860242 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
60860262 ACCATGT
1 ATCATGT
60860269 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:60861176 original size:27 final size:27
Alignment explanation
Indices: 60861143--60861195 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
60861133 GGGAGAAAAC
*
60861143 GGCACACCAATACCTAAGTGCCGAAAT
1 GGCACACCAATACCTAAATGCCGAAAT
*
60861170 GGCACACCAATATCTAAATGCCGAAA
1 GGCACACCAATACCTAAATGCCGAAA
60861196 ATCCCCCCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.40, C:0.28, G:0.17, T:0.15
Consensus pattern (27 bp):
GGCACACCAATACCTAAATGCCGAAAT
Found at i:60870859 original size:37 final size:37
Alignment explanation
Indices: 60870804--60870911 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
60870794 TAGCTCGAAT
* *
60870804 AATCCCCACACGTAGTCATCGAGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
60870841 AATCTCCACACGTAGTCATCGGGTCTTACTCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
60870878 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
60870912 ATATATTTCC
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:60871104 original size:48 final size:48
Alignment explanation
Indices: 60871052--60871197 Score: 229
Period size: 48 Copynumber: 3.0 Consensus size: 48
60871042 ATATATACAC
60871052 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** * *
60871100 ATCTCATACATATTTCATGTTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* * *
60871148 ATCTCATACATGTTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
60871196 AT
1 AT
60871198 ATTTATCTTG
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 87 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:60875876 original size:13 final size:13
Alignment explanation
Indices: 60875860--60875884 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60875850 GAATGATTTC
60875860 TTGAAAATTTTGT
1 TTGAAAATTTTGT
60875873 TTGAAAATTTTG
1 TTGAAAATTTTG
60875885 ACATTCGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (13 bp):
TTGAAAATTTTGT
Found at i:60878385 original size:23 final size:23
Alignment explanation
Indices: 60878322--60878376 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
60878312 ATGTTTACTG
60878322 CTATTAGCAACTTTGCTGCGTTA
1 CTATTAGCAACTTTGCTGCGTTA
* * *
60878345 TTATTAGCATCTTTGCTGGGTTA
1 CTATTAGCAACTTTGCTGCGTTA
60878368 CTATTAGCA
1 CTATTAGCA
60878377 GCTACGCTGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (23 bp):
CTATTAGCAACTTTGCTGCGTTA
Found at i:60886167 original size:22 final size:22
Alignment explanation
Indices: 60886142--60886193 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
60886132 CACTAGGAAC
*
60886142 TATGTGATCTGAGCTCATGAGA
1 TATGTGATCTGAGCCCATGAGA
*
60886164 TATGTGGTCTGAGCCCATGAGA
1 TATGTGATCTGAGCCCATGAGA
60886186 TATGTGAT
1 TATGTGAT
60886194 ATATGTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (22 bp):
TATGTGATCTGAGCCCATGAGA
Found at i:60888569 original size:15 final size:15
Alignment explanation
Indices: 60888543--60888582 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
60888533 TGCTATTAAT
60888543 TTATTAAAATAAAAAA
1 TTATT-AAATAAAAAA
*
60888559 TTATTAAATAAAATA
1 TTATTAAATAAAAAA
*
60888574 TGATTAAAT
1 TTATTAAAT
60888583 TTAAACTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (15 bp):
TTATTAAATAAAAAA
Found at i:60888767 original size:30 final size:30
Alignment explanation
Indices: 60888710--60888768 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
60888700 GCCTTTTGAA
* *
60888710 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
60888740 AATATTTACAAAAAGA-GCAACCAAATTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTT
60888769 GGAAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 24 0.92
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:60897466 original size:36 final size:36
Alignment explanation
Indices: 60897426--60897496 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
60897416 TCCCTCCTCT
60897426 TTATTTACTGTAGTTTTAAACAAGCCAGCTCGGGAG
1 TTATTTACTGTAGTTTTAAACAAGCCAGCTCGGGAG
*
60897462 TTATTTACTGTAGTTTTGAACAAGCCAGCTCGGGA
1 TTATTTACTGTAGTTTTAAACAAGCCAGCTCGGGA
60897497 ATCGGGACGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (36 bp):
TTATTTACTGTAGTTTTAAACAAGCCAGCTCGGGAG
Found at i:60904544 original size:46 final size:45
Alignment explanation
Indices: 60904494--60904666 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
60904484 TGGTTGAGCA
60904494 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
60904540 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* *
60904585 CATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
60904633 CCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60904667 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:60904650 original size:93 final size:93
Alignment explanation
Indices: 60904491--60904661 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
60904481 GGATGGTTGA
* * *
60904491 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60904556 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
60904584 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGTGAACGCCCGATCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60904649 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60904662 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:60909782 original size:30 final size:30
Alignment explanation
Indices: 60909746--60909806 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
60909736 CTTTCATAAG
60909746 TATGTTTTAATAAAGGAATGTTTAGCGATT
1 TATGTTTTAATAAAGGAATGTTTAGCGATT
*
60909776 TATGTTTTAATAAATGAATGTTTAGCGATT
1 TATGTTTTAATAAAGGAATGTTTAGCGATT
60909806 T
1 T
60909807 TTTTTTGTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.03, G:0.18, T:0.46
Consensus pattern (30 bp):
TATGTTTTAATAAAGGAATGTTTAGCGATT
Found at i:60920262 original size:45 final size:45
Alignment explanation
Indices: 60920185--60920447 Score: 185
Period size: 45 Copynumber: 5.8 Consensus size: 45
60920175 AATTGTTCAA
* * * * * *
60920185 GATGCCATAGCGTCTTTCAGCCATTGTCTTATTTATTTCTGACAT
1 GATGCCATAGTGCCTTTCAACTATGGTCTTATTCATTTCTGACAT
* * * *
60920230 GATGCCATAGTGCCTTTCAACTGTGGTATTATTCATTTCCGTCAT
1 GATGCCATAGTGCCTTTCAACTATGGTCTTATTCATTTCTGACAT
* * ** * * *
60920275 GTTGCCATAGCGTTTTTCAACTCTAGTCTTATTCATTTCCGGTACA-
1 GATGCCATAGTGCCTTTCAACTATGGTCTTATTCATTT-CTG-ACAT
* * *
60920321 G-TGTCATAGTGTCTTTCAACTATGGTCTTATTCATTTCTCG-TAT
1 GATGCCATAGTGCCTTTCAACTATGGTCTTATTCATTTCT-GACAT
* * * **
60920365 -AGTGCCATAGTGCCTTTC-ACTTATGGTCTTATTAATTCCCGGTAT
1 GA-TGCCATAGTGCCTTTCAAC-TATGGTCTTATTCATTTCTGACAT
* * * *
60920410 GGTGCTATTGTGTCTTTCAACTATGGTCTTATTCATTT
1 GATGCCATAGTGCCTTTCAACTATGGTCTTATTCATTT
60920448 TTCAAGCCAA
Statistics
Matches: 171, Mismatches: 37, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
43 1 0.01
44 4 0.02
45 159 0.93
46 5 0.03
47 2 0.01
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (45 bp):
GATGCCATAGTGCCTTTCAACTATGGTCTTATTCATTTCTGACAT
Found at i:60920340 original size:90 final size:88
Alignment explanation
Indices: 60920235--60920447 Score: 243
Period size: 90 Copynumber: 2.4 Consensus size: 88
60920225 GACATGATGC
* * * **
60920235 CATAGTGCCTTTCAACTGTGGTATTATTCATTTC-CGTCAT-GTTGCCATAGCGTTTTTCAACTC
1 CATAGTGTCTTTCAACTATGGTCTTATTCATTTCTCGT-ATAG-TGCCATAGCGCCTTTC-ACT-
* *
60920298 TA-GTCTTATTCATTTCCGGTACAGTG
62 TAGGTCTTATTAATTCCCGGTACAGTG
*
60920324 TCATAGTGTCTTTCAACTATGGTCTTATTCATTTCTCGTATAGTGCCATAGTGCCTTTCACTTAT
1 -CATAGTGTCTTTCAACTATGGTCTTATTCATTTCTCGTATAGTGCCATAGCGCCTTTCACTTA-
**
60920389 GGTCTTATTAATTCCCGGTATGGTG
64 GGTCTTATTAATTCCCGGTACAGTG
*
60920414 CTATTGTGTCTTTCAACTATGGTCTTATTCATTT
1 C-ATAGTGTCTTTCAACTATGGTCTTATTCATTT
60920448 TTCAAGCCAA
Statistics
Matches: 107, Mismatches: 11, Indels: 10
0.84 0.09 0.08
Matches are distributed among these distances:
88 2 0.02
89 4 0.04
90 97 0.91
91 4 0.04
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (88 bp):
CATAGTGTCTTTCAACTATGGTCTTATTCATTTCTCGTATAGTGCCATAGCGCCTTTCACTTAGG
TCTTATTAATTCCCGGTACAGTG
Found at i:60926520 original size:12 final size:12
Alignment explanation
Indices: 60926503--60926544 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
60926493 ACTGACTTGG
60926503 GTCACACGACCA
1 GTCACACGACCA
*
60926515 GTCACACCACCA
1 GTCACACGACCA
*
60926527 GTCATACGACCA
1 GTCACACGACCA
60926539 GTCACA
1 GTCACA
60926545 TGCCTGTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.33, C:0.40, G:0.14, T:0.12
Consensus pattern (12 bp):
GTCACACGACCA
Found at i:60926677 original size:18 final size:18
Alignment explanation
Indices: 60926654--60926691 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
60926644 TGACCATTGA
*
60926654 ACAACACGACTGAGACAC
1 ACAACACGACTAAGACAC
*
60926672 ACAACACGGCTAAGACAC
1 ACAACACGACTAAGACAC
60926690 AC
1 AC
60926692 GCCCATGTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.45, C:0.34, G:0.16, T:0.05
Consensus pattern (18 bp):
ACAACACGACTAAGACAC
Found at i:60927707 original size:42 final size:41
Alignment explanation
Indices: 60927616--60927766 Score: 153
Period size: 42 Copynumber: 3.6 Consensus size: 41
60927606 TGCCAACGTT
* * * *
60927616 CCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTC
1 CCAGACATGGTCTTACACGAAATCAAATA-CGATG-CAATGTC
* * *
60927659 CTAGACAAGGTCTTACACGAAATCAAATACGATGTCGATGTC
1 CCAGACATGGTCTTACACGAAATCAAATACGATG-CAATGTC
60927701 CCAGACATGGTCTTACACGTAAATCATAAGT-CGATGCCAATGTC
1 CCAGACATGGTCTTACACG-AAATCA-AA-TACGATG-CAATGTC
*
60927745 CCAGACGTGGTCTTACAC-AAAT
1 CCAGACATGGTCTTACACGAAAT
60927767 ACACATATTG
Statistics
Matches: 92, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
42 31 0.34
43 30 0.33
44 30 0.33
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (41 bp):
CCAGACATGGTCTTACACGAAATCAAATACGATGCAATGTC
Found at i:60931206 original size:46 final size:46
Alignment explanation
Indices: 60931139--60931313 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
60931129 TGTAACCCGC
*
60931139 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
* * *
60931185 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G--T-GTTCGCAT
* * ***
60931235 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
*
60931278 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
60931314 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 60 0.57
47 26 0.25
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
Found at i:60931305 original size:93 final size:93
Alignment explanation
Indices: 60931146--60931317 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
60931136 CGCCCATAAG
* ***
60931146 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
60931211 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
60931239 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
60931304 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
60931318 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:60938835 original size:93 final size:93
Alignment explanation
Indices: 60938723--60938894 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60938713 CGCCCATAAG
* *
60938723 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60938788 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
60938816 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60938881 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
60938895 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:60938891 original size:46 final size:46
Alignment explanation
Indices: 60938716--60938891 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
60938706 TGTAACCCGC
* * *
60938716 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
60938762 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
60938812 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
60938855 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
60938892 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:60945971 original size:18 final size:18
Alignment explanation
Indices: 60945944--60945980 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
60945934 GGCCATTGAG
60945944 CAACACGGCTAAGACACA
1 CAACACGGCTAAGACACA
* *
60945962 CAACATGGCTGAGACACA
1 CAACACGGCTAAGACACA
60945980 C
1 C
60945981 GTCCATGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.32, G:0.19, T:0.08
Consensus pattern (18 bp):
CAACACGGCTAAGACACA
Found at i:60947040 original size:44 final size:43
Alignment explanation
Indices: 60946917--60947057 Score: 153
Period size: 44 Copynumber: 3.3 Consensus size: 43
60946907 CCAATGCCCG
* * *
60946917 TGGTCTTACATGT-AATCATATATCGATGCCACTATCCCAGACA
1 TGGTCTTACATGTAAATCATA-ATCGATGCCAATGTCCTAGACA
* * * *
60946960 AGGTCTTACACG-AAATCA-AATATGATGCCGATGTCCTAGACA
1 TGGTCTTACATGTAAATCATAAT-CGATGCCAATGTCCTAGACA
* *
60947002 TGGTCTTACGTGTAAATCATAAGTCGATGCCAATGTCCTAGACG
1 TGGTCTTACATGTAAATCATAA-TCGATGCCAATGTCCTAGACA
60947046 TGGTCTTACATG
1 TGGTCTTACATG
60947058 AATACATATA
Statistics
Matches: 79, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.03
42 25 0.32
43 21 0.27
44 30 0.38
45 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (43 bp):
TGGTCTTACATGTAAATCATAATCGATGCCAATGTCCTAGACA
Found at i:60947799 original size:41 final size:41
Alignment explanation
Indices: 60947753--60947835 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
60947743 GACATGGGCT
60947753 TGGTAGATTACTAAACAACGATTACAAAAACATAGAAATTA
1 TGGTAGATTACTAAACAACGATTACAAAAACATAGAAATTA
*
60947794 TGGTAGATTACTAAACAACGATTACAAAAACGTAGAAATTA
1 TGGTAGATTACTAAACAACGATTACAAAAACATAGAAATTA
60947835 T
1 T
60947836 CAAAAACCAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.49, C:0.12, G:0.13, T:0.25
Consensus pattern (41 bp):
TGGTAGATTACTAAACAACGATTACAAAAACATAGAAATTA
Found at i:60962590 original size:15 final size:15
Alignment explanation
Indices: 60962570--60962605 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
60962560 GGGTTTCGAA
60962570 ACCACTATTTTTGGT
1 ACCACTATTTTTGGT
60962585 ACCACTATTTTTGGT
1 ACCACTATTTTTGGT
*
60962600 GCCACT
1 ACCACT
60962606 GAAAAATAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.19, C:0.25, G:0.14, T:0.42
Consensus pattern (15 bp):
ACCACTATTTTTGGT
Found at i:60966911 original size:18 final size:18
Alignment explanation
Indices: 60966888--60966924 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
60966878 ATGACTACTT
60966888 ATGCTTAAAATAAATGAA
1 ATGCTTAAAATAAATGAA
60966906 ATGCTTAAAATAAATGAA
1 ATGCTTAAAATAAATGAA
60966924 A
1 A
60966925 GTGTAGCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.11, T:0.27
Consensus pattern (18 bp):
ATGCTTAAAATAAATGAA
Found at i:60968004 original size:23 final size:22
Alignment explanation
Indices: 60967978--60968027 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
60967968 ACAAGTCTTT
* *
60967978 ATGGACAGTTTTGGGCACCTCTA
1 ATGGACAGGTTT-GCCACCTCTA
*
60968001 ATGGA-TGGTTTGCCACCTCTA
1 ATGGACAGGTTTGCCACCTCTA
60968022 ATGGAC
1 ATGGAC
60968028 GATTATCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 14 0.61
22 4 0.17
23 5 0.22
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (22 bp):
ATGGACAGGTTTGCCACCTCTA
Found at i:60980507 original size:12 final size:13
Alignment explanation
Indices: 60980490--60980518 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
60980480 GTAATTTAAA
60980490 TTTTATT-CTAAT
1 TTTTATTACTAAT
60980502 TTTTATTACTAAT
1 TTTTATTACTAAT
60980515 TTTT
1 TTTT
60980519 CTTTTTCCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTATTACTAAT
Found at i:60993642 original size:45 final size:45
Alignment explanation
Indices: 60993578--60993707 Score: 165
Period size: 45 Copynumber: 2.9 Consensus size: 45
60993568 GTTGTACAGT
* *
60993578 ATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATACTGGTGAGAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAGAC
* * *
60993623 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAGAC
* * * *
60993668 ATTTTTCAGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGA
60993708 ATAAATTCGG
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
43 12 0.16
44 14 0.18
45 51 0.66
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTGAGAC
Found at i:61006083 original size:28 final size:28
Alignment explanation
Indices: 61006041--61006132 Score: 121
Period size: 28 Copynumber: 3.3 Consensus size: 28
61006031 CATGTCATTG
*
61006041 GCCCGTGTCCTTCACACGGCCACGACAC
1 GCCCGTGTCCTTCACACGGCCATGACAC
* *
61006069 GCCCGTGTCCCTCACACTGCCATGACAC
1 GCCCGTGTCCTTCACACGGCCATGACAC
* * *
61006097 ACCCGTATCCTTCACACGGCCATGACAT
1 GCCCGTGTCCTTCACACGGCCATGACAC
*
61006125 GTCCGTGT
1 GCCCGTGT
61006133 TCTAGCCCGT
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.18, C:0.42, G:0.20, T:0.20
Consensus pattern (28 bp):
GCCCGTGTCCTTCACACGGCCATGACAC
Found at i:61007158 original size:47 final size:47
Alignment explanation
Indices: 61007085--61007259 Score: 164
Period size: 47 Copynumber: 3.7 Consensus size: 47
61007075 TAAAGTTCCA
* *
61007085 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATCTCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCG
* *
61007132 ATGCCATGTCCCAGACATGGTATTACACT-GACT-ATTATCTCGTAG-CTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCA-TATCTC-AAGTC-G
* * *
61007180 ATG-CATATCCCAGACAT-GTCTTACACTAGCTCTTGTCTCAA-TACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGT--CG
* * *
61007226 ATACTATTTCCCAGACATGGTCTTACACTAGCTC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC
61007260 TCGTAATGTG
Statistics
Matches: 106, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
45 1 0.01
46 21 0.20
47 63 0.59
48 21 0.20
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCG
Found at i:61007285 original size:47 final size:45
Alignment explanation
Indices: 61007179--61007305 Score: 123
Period size: 47 Copynumber: 2.7 Consensus size: 45
61007169 TCTCGTAGCT
*
61007179 GATGCATATCCCAGACATGTCTTACACTAGCTCTTGTCTCAATACC
1 GATGCATATCCCAGACATGTCTTACACTAGCTCTCG-CTCAATACC
* * *
61007225 GATACTATTTCCCAGACATGGTCTTACACTAGCTCTCG-T-AATGTGGCC
1 GATGC-ATATCCCAGACAT-GTCTTACACTAGCTCTCGCTCAA--T-ACC
* * *
61007273 GATGCATGTCCCAAACATGTCTTATACTAGCTC
1 GATGCATATCCCAGACATGTCTTACACTAGCTC
61007306 ACAAACAAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
45 2 0.03
46 19 0.28
47 24 0.35
48 23 0.34
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (45 bp):
GATGCATATCCCAGACATGTCTTACACTAGCTCTCGCTCAATACC
Found at i:61010591 original size:50 final size:50
Alignment explanation
Indices: 61010511--61010611 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 50
61010501 AGTAATAACC
* *
61010511 TTCACGCAAACCAAGTAACCTAATCCAAACAACCTGTGACTCAATACCAT
1 TTCACGCAAACCAAGTAACCTAATCCAAACAACATGCGACTCAATACCAT
* *
61010561 TTCAGGCAAACCAGGTAACCTAATCCAAACAACATGCGACTCAATACCAT
1 TTCACGCAAACCAAGTAACCTAATCCAAACAACATGCGACTCAATACCAT
61010611 T
1 T
61010612 CTAACTTGTT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.40, C:0.31, G:0.10, T:0.20
Consensus pattern (50 bp):
TTCACGCAAACCAAGTAACCTAATCCAAACAACATGCGACTCAATACCAT
Found at i:61012446 original size:24 final size:24
Alignment explanation
Indices: 61012416--61012470 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
61012406 TTAATTTTCA
*
61012416 TAATATA-AATTCACCATAATTAGT
1 TAATATATAATT-ACCATAATTAAT
**
61012440 TAATATATAATTGTCATAATTAAT
1 TAATATATAATTACCATAATTAAT
61012464 TAATATA
1 TAATATA
61012471 GGCTAATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (24 bp):
TAATATATAATTACCATAATTAAT
Found at i:61027445 original size:26 final size:26
Alignment explanation
Indices: 61027394--61027446 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
61027384 GTCAATTTTT
* * *
61027394 TTCTTTTTTTTATTGTTTGTATTATA
1 TTCTTATTTTTATTATTTGTAGTATA
61027420 TTCTTATTTTTATATATTT-TAGTATA
1 TTCTTATTTTTAT-TATTTGTAGTATA
61027446 T
1 T
61027447 ATATATGGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.21, C:0.04, G:0.06, T:0.70
Consensus pattern (26 bp):
TTCTTATTTTTATTATTTGTAGTATA
Found at i:61027940 original size:16 final size:16
Alignment explanation
Indices: 61027919--61027950 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
61027909 TTTTGTGTAA
*
61027919 TGGGCTGTTAGTTTAG
1 TGGGCTGGTAGTTTAG
61027935 TGGGCTGGTAGTTTAG
1 TGGGCTGGTAGTTTAG
61027951 GTTATTGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.06, G:0.41, T:0.41
Consensus pattern (16 bp):
TGGGCTGGTAGTTTAG
Found at i:61028812 original size:72 final size:72
Alignment explanation
Indices: 61028668--61029351 Score: 1199
Period size: 72 Copynumber: 9.5 Consensus size: 72
61028658 ACATGTGAAC
* * * *
61028668 TGAGGCTCAACTCAGTTT-TCGCAATATGAGTTGATTTTTTTGATAACAGAAATTGAAATTACCT
1 TGAGGCTCAACTCA-TTTCTCGCAATAGGAGTTGA--ATTTTGAAAACATAAATTGAAATTACCT
** *
61028732 CAGCGTGTCC
63 CAATGTGTCT
*
61028742 CGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
61028807 TGTGTCT
66 TGTGTCT
61028814 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
61028879 TGTGTCT
66 TGTGTCT
** * *
61028886 TGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAG
1 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
* *
61028951 CGTGTCC
66 TGTGTCT
61028958 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
61029023 TGTGTCT
66 TGTGTCT
61029030 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
61029095 TGTGTCT
66 TGTGTCT
61029102 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
61029167 TGTGTCT
66 TGTGTCT
61029174 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
61029239 TGTGTCT
66 TGTGTCT
61029246 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
61029311 TGTGTCT
66 TGTGTCT
*
61029318 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGA
61029352 TTCTTTCAAA
Statistics
Matches: 587, Mismatches: 22, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
72 556 0.95
73 3 0.01
74 28 0.05
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (72 bp):
TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAATTACCTCAA
TGTGTCT
Found at i:61029044 original size:216 final size:217
Alignment explanation
Indices: 61028668--61030102 Score: 1367
Period size: 216 Copynumber: 6.6 Consensus size: 217
61028658 ACATGTGAAC
* *
61028668 TGAGGCTCAACTCAGTTT-TCGCAATATGAGTTGATTTTTTTGATAACAGAAATTGAAATTACCT
1 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA-TATTTTGAAAACAGAAATTGAAATTACCT
* ** *
61028732 CAGCGTGTCCCGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAA
64 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACATAAATTGAA
61028797 ATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATA
129 ATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATA
61028862 AATTGAAATTACCTCAATGTGTCT
194 AATTGAAATTACCTCAATGTGTCT
*
61028886 TGAGGCTCAACTCATTTCTCGCAATATAAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAATTACCTCA
** *
61028950 GCGTGTCCTGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAAT
66 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACATAAATTGAAAT
61029015 TACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAA
131 TACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAA
61029080 TTGAAATTACCTCAATGTGTCT
196 TTGAAATTACCTCAATGTGTCT
* *
61029102 TGAGGCTCAACTCATTTCTCGCAATAGGAGTTGA-ATTTTGAAAACATAAATTGAAATTACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAATTACCTCA
** * ** *
61029166 ATGTGTCTTGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAATTGAAAT
66 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACATAAATTGAAAT
61029231 TACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAA
131 TACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAA
61029296 TTGAAATTACCTCAATGTGTCT
196 TTGAAATTACCTCAATGTGTCT
*
61029318 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTCAAAAACATAATAATGAAAACAGAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-----T-------AT--T-TTGAAAACAGAA
* * * * *
61029383 ATGGAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
51 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTG
* ** * **
61029448 AAAAACAGAAATCAAAAGGCTTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCT
114 -AAAAC----AT----A-----AATTGAAATTACCTC--AATGTGTCTTGAGGCTCAACTCATTT
* * * * * * ** * *
61029513 CTCGCAATATGAGTTGAA-ATTAAAACACAAAAATTAAAAATACCTCAGCGTGCCC
163 CTCGCAATAGGAGTTGAATTTTGAAA-ACATAAATTGAAATTACCTCAATGTGTCT
* ** * * * *
61029568 CGAGGCTCAACTCACCTCTTGCAATATGAGCTGA-ATTTGGAAAAGTAGAAATT--AA--A----
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATATTTTGAAAA-CAGAAATTGAAATTACCTC
* *
61029624 A--G-G---T-----TCAACCCACCTCTCGCAATATGAGTTG-ATTCTTGACAAACAGAAATTGA
65 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATT-TTGA-AAACATAAATTGA
* **
61029677 AATTACCTC-ATCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT---A--TGAA--TTG-----A
128 AATTACCTCAAT-GTGTCTTGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACA
* * *
61029729 -AAA---AAA-TACCACAGTGTGTAAT
192 TAAATTGAAATTACCTCAATGTGT-CT
* ** * * *
61029751 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAGAAATTGAAAATACCTC
1 -TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAATTACCTC
* * * *
61029816 AGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAA
65 AGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---ATTTTGAAAACATAAA
* ** **
61029880 TTGAAAATACCTCAACATGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAA
124 TTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAA
* ** *
61029945 ACAGAAATTGAAATTACCTCAGCGTGTCC
189 ACATAAATTGAAATTACCTCAATGTGTCT
* * *
61029974 TGAGGCTCAACTCATTTCTCGCAATATGAGCTGATTTTTTTTTTAACAACAGAAATTGAAATTAC
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA---TATTTTGAA-AACAGAAATTGAAATTAC
* *
61030039 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATT
62 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTG-AAAACATAAATT
61030103 AAAAGGCTTA
Statistics
Matches: 1034, Mismatches: 90, Indels: 183
0.79 0.07 0.14
Matches are distributed among these distances:
182 10 0.01
183 3 0.00
184 37 0.04
185 7 0.01
186 5 0.00
187 1 0.00
188 1 0.00
192 1 0.00
193 2 0.00
194 4 0.00
196 2 0.00
197 1 0.00
198 1 0.00
199 31 0.03
201 14 0.01
205 25 0.02
206 1 0.00
207 48 0.05
208 5 0.00
209 2 0.00
210 2 0.00
212 4 0.00
213 3 0.00
214 10 0.01
216 448 0.43
217 3 0.00
218 29 0.03
219 1 0.00
220 8 0.01
221 12 0.01
222 30 0.03
223 5 0.00
224 45 0.04
225 9 0.01
226 23 0.02
227 1 0.00
229 2 0.00
231 2 0.00
232 59 0.06
233 2 0.00
234 10 0.01
235 12 0.01
237 2 0.00
239 2 0.00
243 1 0.00
248 14 0.01
249 5 0.00
250 89 0.09
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (217 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAATTACCTCA
GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACATAAATTGAAAT
TACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATAGGAGTTGAATTTTGAAAACATAAA
TTGAAATTACCTCAATGTGTCT
Found at i:61029433 original size:88 final size:87
Alignment explanation
Indices: 61029284--61029529 Score: 298
Period size: 88 Copynumber: 2.8 Consensus size: 87
61029274 AGTTGAATTT
* * * **
61029284 TGAAAACATAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 TGAAAACATAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
61029349 TGA-TTCTTTCAAAAACATAATAA
66 TGATTTCTTTCAAAAACA-AA-AA
* * *
61029372 TGAAAACAGAAATGGAAAATACCTCAGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TGAAAACATAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
61029437 TGATTTTTTTGAAAAACAGAAA
66 TGATTTCTTTCAAAAACAAAAA
* * *
61029459 TCAAAAGGC-TTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAA--CATAAATTGAAAATACCTC--AGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
61029523 GAGTTGA
62 GAGTTGA
61029530 AATTAAAACA
Statistics
Matches: 136, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
87 7 0.05
88 75 0.55
89 13 0.10
90 41 0.30
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (87 bp):
TGAAAACATAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTCTTTCAAAAACAAAAA
Found at i:61029899 original size:77 final size:75
Alignment explanation
Indices: 61029751--61030088 Score: 427
Period size: 77 Copynumber: 4.5 Consensus size: 75
61029741 AGTGTGTAAT
* *
61029751 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTAAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
*
61029814 TCAGCATGTGAAC
66 TCAGC--GTG-TC
*
61029827 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
* *
61029891 TCAACATGTC
66 TCAGCGTGTC
* ** * * *
61029901 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA---ATTTTGAAAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
61029963 TCAGCGTGTC
66 TCAGCGTGTC
** * * *
61029973 CTGAGGCTCAACTCATTTCTCGCAATATGAGCTGATTTTTTTTTTAACAACAGAAATTGAAATTA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGAA-AACAGAAATTGAAAATA
61030038 CCTCAGCGTGTC
64 CCTCAGCGTGTC
*
61030050 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
61030089 GAAAAACAAA
Statistics
Matches: 232, Mismatches: 22, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
72 65 0.28
74 1 0.00
75 64 0.28
76 11 0.05
77 91 0.39
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (75 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAACAGAAATTGAAAATACC
TCAGCGTGTC
Found at i:61030025 original size:149 final size:148
Alignment explanation
Indices: 61029751--61030106 Score: 459
Period size: 149 Copynumber: 2.4 Consensus size: 148
61029741 AGTGTGTAAT
* * *
61029751 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAGAAATTGAAAATACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAAATACCTC
*
61029816 AGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTGAAAACAGAAAT
65 AGCA-GTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGCTGATTTTTTTTGAAAACAGAAAT
61029881 TGAAAATACCTCAACATGTC
129 TGAAAATACCTCAACATGTC
* ** * *
61029901 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCA
* ** * *
61029966 GC-GTG-TCCTGAGGCTCAACTCATTTCTCGCAATATGAGCTGATTTTTTTTTTAACAACAGAAA
66 GCAGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGCTGA-TTTTTTTTGAA-AACAGAAA
* * *
61030029 TTGAAATTACCTCAGCGTGTC
128 TTGAAAATACCTCAACATGTC
* *
61030050 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATT-AAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATTGAAAA
61030107 GGCTTAACTC
Statistics
Matches: 178, Mismatches: 24, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
146 2 0.01
147 32 0.18
148 19 0.11
149 95 0.53
150 30 0.17
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (148 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCA
GCAGTGAACCGAGGCTCAACTCACCTCTCGCAATATAAGCTGATTTTTTTTGAAAACAGAAATTG
AAAATACCTCAACATGTC
Found at i:61030225 original size:69 final size:71
Alignment explanation
Indices: 61030106--61030279 Score: 205
Period size: 69 Copynumber: 2.5 Consensus size: 71
61030096 AAAAATTAAA
* * * * **
61030106 AGGCTTAACTCACCTCTCGCAATATGAG-TCA-ATTTAAAACATAAACTAAAAATACCTCGGCGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACATAAACTAAAAATACCTCAACGT
61030169 GCCCCG
66 GCCCCG
* *
61030175 AGGCTCAACTCACTTCTTGCAATATGAGTTGATTTTTAAAA-A-AAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACATAAACTAAAAATACCTCAACGT
* **
61030238 GTCTTG
66 GCCCCG
61030244 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
61030280 CCTTGGAAAG
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
68 1 0.01
69 79 0.88
70 3 0.03
71 7 0.08
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30
Consensus pattern (71 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACATAAACTAAAAATACCTCAACGT
GCCCCG
Found at i:61044093 original size:45 final size:45
Alignment explanation
Indices: 61044029--61044119 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
61044019 TCAAATGGAG
* *
61044029 AATACCACAAAATACACTTACCCAGTAAAAACAAATATTTCACTA
1 AATACCACAAAATACACTTACCCAGTAAAAAAAAATACTTCACTA
*
61044074 AATACCACAGAATACACTTACCCAGTAAAAAAAAATACTTCACTA
1 AATACCACAAAATACACTTACCCAGTAAAAAAAAATACTTCACTA
61044119 A
1 A
61044120 CTTAATCATT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.52, C:0.24, G:0.03, T:0.21
Consensus pattern (45 bp):
AATACCACAAAATACACTTACCCAGTAAAAAAAAATACTTCACTA
Found at i:61047400 original size:31 final size:31
Alignment explanation
Indices: 61047362--61047500 Score: 201
Period size: 31 Copynumber: 4.5 Consensus size: 31
61047352 ACAAATGACA
*
61047362 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
61047393 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
* *
61047424 AGTGAAAAGTGGAAG-TTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CTGCTACCTGATC
*
61047455 AGTGAAAAGTGGTAGC-TCTGACTACCTAATC
1 AGTGAAAAGTGGTAGCTTCTG-CTACCTGATC
*
61047486 AGTGAATAGTGGTAG
1 AGTGAAAAGTGGTAG
61047501 TTTCGGCCAC
Statistics
Matches: 98, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
30 4 0.04
31 94 0.96
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
Found at i:61047605 original size:47 final size:46
Alignment explanation
Indices: 61047535--61047641 Score: 160
Period size: 47 Copynumber: 2.3 Consensus size: 46
61047525 AAGTGATTTC
* * *
61047535 CGTATAAGACCATATCTGGGATATGGCATCAGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGACATCAGTGAGATATATGATA
*
61047581 CTGTATAAGACCATATCTGGGATATGACATCAGTGAGATATATGATT
1 C-GTATAAGACCATATCTGGGATATGACATCAGTGAGATATATGATA
*
61047628 CGTGTAAGACCATA
1 CGTATAAGACCATA
61047642 GCTAAGCTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 13 0.24
47 42 0.76
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGACATCAGTGAGATATATGATA
Found at i:61047680 original size:42 final size:42
Alignment explanation
Indices: 61047617--61047743 Score: 145
Period size: 42 Copynumber: 3.0 Consensus size: 42
61047607 ACATCAGTGA
*
61047617 GATATATG-AT-TCGTGTAAGACCATAGCTAAGCTATAGCATC
1 GATATATGAATAT-GTGTAAGACCATAGCTAAGCTATGGCATC
**
61047658 GATATATGAATATGTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATATGAATATGTGTAAGACCATAGCTAAGCTATGGCATC
* * *
61047700 -ATTATGTGAAGATGTGTAAGACCATAGTTGAA-CTATGGCATC
1 GA-TATATGAATATGTGTAAGACCATAGCT-AAGCTATGGCATC
61047742 GA
1 GA
61047744 GAAAACGAAG
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
41 9 0.12
42 62 0.85
43 2 0.03
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (42 bp):
GATATATGAATATGTGTAAGACCATAGCTAAGCTATGGCATC
Found at i:61049579 original size:187 final size:187
Alignment explanation
Indices: 61049252--61049630 Score: 512
Period size: 187 Copynumber: 2.0 Consensus size: 187
61049242 ATTAGATACT
** * *
61049252 TTAAGCTCTTATGTCTAAAAGTACACGACACTTCTCCCTATAATGGTATTGTCTCTAGATTCTTA
1 TTAAGCTCTTATGTCTAAAAACACACGACACTTCTCCCTATAAAGGTAGTGTCTCTAGATTCTTA
* * * *
61049317 GCATAAACACTACCGCTACAAGCTTTAAGTCTTGAGTTGGATAATTCTTTTAATGTGGCTTGAGC
66 GCACAAACACTACCACTACAAGCTTTAAGTCTTGAGTTGGATAATTCTTTTAATGCGGATTGAGC
* * * * * * *
61049382 TAGCGAGATGCATAGGGCACAACCTTTTTTCTTTGTATAAGCATACATCCTAGCCCA
131 TAGCGAGATGCATACGCCACAAACTTTTCTCTTTGCATAAGCACACATCCTAACCCA
* *
61049439 TTAAGCTCTTATGGTCTAAAAACACATGACACTTCTCCC-ATAAAGTTAGTGTCTCTAGA-TCTT
1 TTAAGCTCTTAT-GTCTAAAAACACACGACACTTCTCCCTATAAAGGTAGTGTCTCTAGATTC-T
* * *
61049502 TAGCACCAACATTACCACTGCAAGCTTTAAGTCTTGAGTTGGATAA-TCATTTTAATGCGGATTG
64 TAGCACAAACACTACCACTACAAGCTTTAAGTCTTGAGTTGGATAATTC-TTTTAATGCGGATTG
* *
61049566 ATCTAGTGAGATGCATACGCCACAAACTTTTCTCTTTGCATAAGCACACATCCTAACCCA
128 AGCTAGCGAGATGCATACGCCACAAACTTTTCTCTTTGCATAAGCACACATCCTAACCCA
61049626 TTAAG
1 TTAAG
61049631 GGATATGTCA
Statistics
Matches: 167, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
186 4 0.02
187 140 0.84
188 23 0.14
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (187 bp):
TTAAGCTCTTATGTCTAAAAACACACGACACTTCTCCCTATAAAGGTAGTGTCTCTAGATTCTTA
GCACAAACACTACCACTACAAGCTTTAAGTCTTGAGTTGGATAATTCTTTTAATGCGGATTGAGC
TAGCGAGATGCATACGCCACAAACTTTTCTCTTTGCATAAGCACACATCCTAACCCA
Found at i:61050947 original size:135 final size:135
Alignment explanation
Indices: 61050705--61050980 Score: 525
Period size: 135 Copynumber: 2.0 Consensus size: 135
61050695 GTTTATTAGT
* *
61050705 TAAAGTCTCCCCTGTTTCAGGGTTCGACTACTCTGACCTTCATGCATTACGACTTAGATATCTCC
1 TAAAGCCTCCCCTGTTTCAGGGTTCGACTACTCTGACCTTCATGCATTACGACTTAGATATCGCC
*
61050770 CTGTACAGGGCTTCAATACTTATGCCATTTGTTTCTAATGAAACTAGACTCAAAAAGGAATCTGT
66 CTGTACAGGGCTTCAATACTTATGCCATTTGTTTCTAATGAAACTAGACTCAAAAAGGAATCTAT
61050835 ACATA
131 ACATA
61050840 TAAAGCCTCCCCTGTTTCAGGGTTCGACTACTCTGACCTTCATGCATTACGACTTAGATATCGCC
1 TAAAGCCTCCCCTGTTTCAGGGTTCGACTACTCTGACCTTCATGCATTACGACTTAGATATCGCC
61050905 CTGTACAGGGCTTCAATACTTATGCCATTTGTTTCTAATGAAACTAGACTCAAAAAGGAATCTAT
66 CTGTACAGGGCTTCAATACTTATGCCATTTGTTTCTAATGAAACTAGACTCAAAAAGGAATCTAT
61050970 ACATA
131 ACATA
61050975 TAAAGC
1 TAAAGC
61050981 ATGACTTCTA
Statistics
Matches: 138, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
135 138 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.32
Consensus pattern (135 bp):
TAAAGCCTCCCCTGTTTCAGGGTTCGACTACTCTGACCTTCATGCATTACGACTTAGATATCGCC
CTGTACAGGGCTTCAATACTTATGCCATTTGTTTCTAATGAAACTAGACTCAAAAAGGAATCTAT
ACATA
Found at i:61052132 original size:40 final size:40
Alignment explanation
Indices: 61052078--61052195 Score: 218
Period size: 40 Copynumber: 3.0 Consensus size: 40
61052068 CGGATGTAAC
* *
61052078 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
61052118 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
61052158 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
61052196 TTTTTTTCCA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:61059575 original size:26 final size:26
Alignment explanation
Indices: 61059540--61059603 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 26
61059530 TTCCGACCCA
*
61059540 CAGCTCGTGTGCGCAGACCCATTTCG
1 CAGCTCGTGTGAGCAGACCCATTTCG
* * * *
61059566 CAGCTTGTGTGAGCATACCTATTTCA
1 CAGCTCGTGTGAGCAGACCCATTTCG
*
61059592 CAACTCGTGTGA
1 CAGCTCGTGTGA
61059604 ACAACTATGT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.28
Consensus pattern (26 bp):
CAGCTCGTGTGAGCAGACCCATTTCG
Found at i:61079254 original size:31 final size:31
Alignment explanation
Indices: 61079219--61079281 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
61079209 TAAATACTTG
*
61079219 AGTCCAAATTTAATATTTTAAAAATAAATTT
1 AGTCCAAATCTAATATTTTAAAAATAAATTT
* *
61079250 AGTCCAAATCTAATATTTTTAAAATAAGTTT
1 AGTCCAAATCTAATATTTTAAAAATAAATTT
61079281 A
1 A
61079282 ACTTGATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (31 bp):
AGTCCAAATCTAATATTTTAAAAATAAATTT
Found at i:61089317 original size:40 final size:39
Alignment explanation
Indices: 61089273--61089363 Score: 101
Period size: 40 Copynumber: 2.3 Consensus size: 39
61089263 GTAGTCAGGG
* * ** *
61089273 GCACCAAAGTGCGAATAGGGGCATAGACGTGCAAATAGGA
1 GCACCGAAGTGCGAACAGAAGCACAGACGTGCAAATA-GA
* *
61089313 GCACCGAAGCGCGAACAGAATCACAGACGTGCAAATAGA
1 GCACCGAAGTGCGAACAGAAGCACAGACGTGCAAATAGA
61089352 GACACCGAAGTG
1 G-CACCGAAGTG
61089364 TATATAGGGG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.07
40 39 0.93
ACGTcount: A:0.38, C:0.22, G:0.30, T:0.10
Consensus pattern (39 bp):
GCACCGAAGTGCGAACAGAAGCACAGACGTGCAAATAGA
Found at i:61089440 original size:20 final size:20
Alignment explanation
Indices: 61089415--61089457 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 20
61089405 CAAATAGAGA
61089415 CACCAAAGTGT-ATACAAGGG
1 CACCAAAGTGTGA-ACAAGGG
61089435 CACCAAAGTGTGAACAAGGG
1 CACCAAAGTGTGAACAAGGG
61089455 CAC
1 CAC
61089458 AATTGTGCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.40, C:0.23, G:0.26, T:0.12
Consensus pattern (20 bp):
CACCAAAGTGTGAACAAGGG
Found at i:61090001 original size:30 final size:31
Alignment explanation
Indices: 61089967--61090026 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
61089957 ACCTTTTCAG
61089967 TTTCCTCCCAA-AACTTTTACTC-CCTCCCAC
1 TTTCC-CCCAATAACTTTTACTCTCCTCCCAC
*
61089997 TTTCCCCCAATAACTTTTGCTCTCCTCCCA
1 TTTCCCCCAATAACTTTTACTCTCCTCCCA
61090027 TCCCACCCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 5 0.19
30 15 0.56
31 7 0.26
ACGTcount: A:0.18, C:0.45, G:0.02, T:0.35
Consensus pattern (31 bp):
TTTCCCCCAATAACTTTTACTCTCCTCCCAC
Found at i:61093984 original size:56 final size:56
Alignment explanation
Indices: 61093924--61094133 Score: 321
Period size: 56 Copynumber: 3.8 Consensus size: 56
61093914 TCCTTAACAG
* * * *
61093924 GGTCTTACTCACACACATATATCGGAGTCACATATCGATGCCAATGTATAAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATAAAACGT
* * *
61093980 GGTCTTACTTGCACACATATATCGGAATCACATATCGATGCCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATAAAACGT
**
61094036 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCTGACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATAAAACGT
* *
61094092 GGTCTTTCTCGCACACATATATCAGAATCACATGTCGATGCC
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCC
61094134 TCATATACAT
Statistics
Matches: 141, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 141 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACGTATAAAACGT
Found at i:61101650 original size:18 final size:19
Alignment explanation
Indices: 61101627--61101676 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
61101617 ATGTCGTTCG
61101627 TTTTCAAAACATTAATC-A
1 TTTTCAAAACATTAATCAA
** * *
61101645 TTTTCAATTCAATATTCAA
1 TTTTCAAAACATTAATCAA
61101664 TTTTCAAAACATT
1 TTTTCAAAACATT
61101677 TTTCATTACA
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (19 bp):
TTTTCAAAACATTAATCAA
Found at i:61104296 original size:12 final size:12
Alignment explanation
Indices: 61104273--61104307 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
61104263 TTGAGGCAGT
*
61104273 TATAAATAGTGC
1 TATAAGTAGTGC
*
61104285 TATGAGTAGTGC
1 TATAAGTAGTGC
61104297 TATAAGTAGTG
1 TATAAGTAGTG
61104308 TCCATTTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (12 bp):
TATAAGTAGTGC
Found at i:61105302 original size:24 final size:24
Alignment explanation
Indices: 61105256--61105305 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
61105246 GTTTTTTTTG
61105256 TAATTTTATTAAATTTGAAATATT
1 TAATTTTATTAAATTTGAAATATT
* *
61105280 TAATTTT-TTAAAGTTTTATATATT
1 TAATTTTATTAAA-TTTGAAATATT
61105304 TA
1 TA
61105306 CCTGAACTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 5 0.22
24 18 0.78
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (24 bp):
TAATTTTATTAAATTTGAAATATT
Found at i:61109033 original size:35 final size:35
Alignment explanation
Indices: 61108983--61109057 Score: 123
Period size: 35 Copynumber: 2.1 Consensus size: 35
61108973 CACATCTATG
*
61108983 TCTGTATCTGAGATGGGCTTAGGCCCGAATCTGCA
1 TCTGTATCTGAGATGGGCTTAGGCCCGAATATGCA
* *
61109018 TCTGTATCTGTGATGGGCTTAGGCCCGAATATGTA
1 TCTGTATCTGAGATGGGCTTAGGCCCGAATATGCA
61109053 TCTGT
1 TCTGT
61109058 CTGATTATGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.33
Consensus pattern (35 bp):
TCTGTATCTGAGATGGGCTTAGGCCCGAATATGCA
Found at i:61110665 original size:44 final size:44
Alignment explanation
Indices: 61110602--61110691 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
61110592 AGTCAAGTTT
61110602 TATATTTAGTTTTATCTCATTATGTTAAGTACTTGGTGTATAAG
1 TATATTTAGTTTTATCTCATTATGTTAAGTACTTGGTGTATAAG
61110646 TATATTTAGTTTTATCTCATTATGTTAAGTACTTGGTGTATAAG
1 TATATTTAGTTTTATCTCATTATGTTAAGTACTTGGTGTATAAG
61110690 TA
1 TA
61110692 ACTGAAGCCC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.28, C:0.07, G:0.16, T:0.50
Consensus pattern (44 bp):
TATATTTAGTTTTATCTCATTATGTTAAGTACTTGGTGTATAAG
Found at i:61111747 original size:5 final size:5
Alignment explanation
Indices: 61111737--61111761 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
61111727 CTCTGCCAAT
61111737 TTTTC TTTTC TTTTC TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC
61111762 CTCCATCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:61115734 original size:14 final size:16
Alignment explanation
Indices: 61115709--61115743 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
61115699 ATTAAACTAG
61115709 TTTAATTAACTTAA-C
1 TTTAATTAACTTAAGC
61115724 TTTAATT-ACTTAAGC
1 TTTAATTAACTTAAGC
61115739 TTTAA
1 TTTAA
61115744 CTACCAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.49
Consensus pattern (16 bp):
TTTAATTAACTTAAGC
Found at i:61120122 original size:23 final size:23
Alignment explanation
Indices: 61120092--61120145 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
61120082 CATTTTTCCC
*
61120092 AAAAATAAAGATAAT-AAAAAAAT
1 AAAAATAAA-ACAATCAAAAAAAT
* *
61120115 AAAAATAAACCAATCAAAATAAT
1 AAAAATAAAACAATCAAAAAAAT
61120138 AAAAATAA
1 AAAAATAA
61120146 CTATCTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 3 0.11
23 24 0.89
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.17
Consensus pattern (23 bp):
AAAAATAAAACAATCAAAAAAAT
Found at i:61123576 original size:24 final size:24
Alignment explanation
Indices: 61123549--61123596 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
61123539 AATATTATGT
*
61123549 TTATATTTATATTAAATAAAATAA
1 TTATATTAATATTAAATAAAATAA
*
61123573 TTATATTAATATTAAGTAAAATAA
1 TTATATTAATATTAAATAAAATAA
61123597 AAATTCCCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (24 bp):
TTATATTAATATTAAATAAAATAA
Found at i:61127840 original size:48 final size:46
Alignment explanation
Indices: 61127750--61127915 Score: 154
Period size: 48 Copynumber: 3.5 Consensus size: 46
61127740 AAGTGCCAAC
* * * * * * *
61127750 ATCATGGCCCGAAGCCAACTCAATATATCTCGTACACAAAGTGCTAAT
1 ATCATGGCCTGAAGCCAAATCAGTA-A-CTCGCACCCGAAGTGCTGAT
*
61127798 ATCATGGCCTGTAGCCAAATCAGTGAAGCTCGCACCCGAAGTG-TCGAT
1 ATCATGGCCTGAAGCCAAATCAGT-AA-CTCGCACCCGAAGTGCT-GAT
** * *
61127846 ATCATGGCCCAAAGCCAAATCAAAGTAACTCGCACCTGAAATGCTGAT
1 ATCATGGCCTGAAGCCAAATC--AGTAACTCGCACCCGAAGTGCTGAT
61127894 ATCATGGCCTGAAGCCAAATCA
1 ATCATGGCCTGAAGCCAAATCA
61127916 ATGTATCACC
Statistics
Matches: 97, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 88 0.91
49 4 0.04
50 3 0.03
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (46 bp):
ATCATGGCCTGAAGCCAAATCAGTAACTCGCACCCGAAGTGCTGAT
Found at i:61138631 original size:60 final size:60
Alignment explanation
Indices: 61138531--61138669 Score: 183
Period size: 60 Copynumber: 2.3 Consensus size: 60
61138521 AACTGTGTTA
* * * *
61138531 ATATGGGCAAGGCCCAATATATCTCGACTTGTAACAGGGCTACGGCCCAGATTGATATTG
1 ATATGGGCTAGGCCCAGTATATCTCGAATTGTAACAGGGCTACGGCCCAGATTAATATTG
* *
61138591 ATATGGGCTAGGCCCAGTATA-CTCTGATATTGTAA-GGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAGTATATCTC-GA-ATTGTAACAGGGCTACGGCCCAGATTAATATTG
61138651 ATATGGGCTAAGGCCCAGT
1 ATATGGGCT-AGGCCCAGT
61138670 TAACTCTAAT
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
59 3 0.04
60 52 0.74
61 15 0.21
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAGTATATCTCGAATTGTAACAGGGCTACGGCCCAGATTAATATTG
Found at i:61138658 original size:28 final size:27
Alignment explanation
Indices: 61138567--61138672 Score: 90
Period size: 28 Copynumber: 3.7 Consensus size: 27
61138557 ACTTGTAACA
*
61138567 GGGCTACGGCCCAGATTGATATTGATAT
1 GGGCTA-GGCCCAGATTAATATTGATAT
* *
61138595 GGGCTAGGCCCAGTATACTCTGATATTG-TAAG
1 GGGCTAGGCCCAG---A-T-TAATATTGAT-AT
61138627 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTA-GGCCCAGATTAATATTGATAT
61138655 GGGCTAAGGCCCAG-TTAA
1 GGGCT-AGGCCCAGATTAA
61138673 CTCTAATTTC
Statistics
Matches: 66, Mismatches: 3, Indels: 19
0.75 0.03 0.22
Matches are distributed among these distances:
27 11 0.17
28 26 0.39
29 3 0.05
30 2 0.03
31 2 0.03
32 15 0.23
33 7 0.11
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (27 bp):
GGGCTAGGCCCAGATTAATATTGATAT
Found at i:61140653 original size:19 final size:20
Alignment explanation
Indices: 61140617--61140656 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
61140607 AGGGAATTTT
61140617 TATTTTATTTAATATTAATA
1 TATTTTATTTAATATTAATA
61140637 TATTTATATTT-AT-TTAATA
1 TATTT-TATTTAATATTAATA
61140656 T
1 T
61140657 TAACATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 7 0.37
21 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTTATTTAATATTAATA
Found at i:61140812 original size:51 final size:51
Alignment explanation
Indices: 61140736--61140839 Score: 136
Period size: 51 Copynumber: 2.0 Consensus size: 51
61140726 TATTTCTTTG
* * * * *
61140736 AATTTTTTAGAATTAAGATTAAATTGAGATGATTTGTAAATGTTGAAAGTT
1 AATTTTTTAAAATTAAGACTAAATTGAGATAATATGTAAAAGTTGAAAGTT
* * *
61140787 AATTTTTTAAAATTATGACTAAATTGATATAATATGTAAAAGTTGAATGTT
1 AATTTTTTAAAATTAAGACTAAATTGAGATAATATGTAAAAGTTGAAAGTT
61140838 AA
1 AA
61140840 ATTTGTTATT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.42, C:0.01, G:0.14, T:0.42
Consensus pattern (51 bp):
AATTTTTTAAAATTAAGACTAAATTGAGATAATATGTAAAAGTTGAAAGTT
Found at i:61142833 original size:18 final size:18
Alignment explanation
Indices: 61142810--61142849 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
61142800 TATTTAAACA
61142810 AACAAAAGATCGAAACCC
1 AACAAAAGATCGAAACCC
61142828 AACAAAAGATCGAAACCC
1 AACAAAAGATCGAAACCC
61142846 AACA
1 AACA
61142850 CATTAGGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.57, C:0.28, G:0.10, T:0.05
Consensus pattern (18 bp):
AACAAAAGATCGAAACCC
Found at i:61143945 original size:14 final size:15
Alignment explanation
Indices: 61143923--61143952 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
61143913 TAATATGATG
61143923 ATAGCAATAATAATA
1 ATAGCAATAATAATA
61143938 ATAG-AATAATAATA
1 ATAGCAATAATAATA
61143952 A
1 A
61143953 AGTAGAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.27
Consensus pattern (15 bp):
ATAGCAATAATAATA
Found at i:61144038 original size:3 final size:3
Alignment explanation
Indices: 61144019--61144161 Score: 55
Period size: 3 Copynumber: 47.3 Consensus size: 3
61144009 AATGATGGAA
* * *
61144019 AAT AAT GAT AA- AAT AAT AAT AAT AA- ACT AAGG AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
* * * * * * **
61144063 ACT AAC AAT AAT -AT AAAT AAT AAT ACA- AAC CAT TAG AGA- AAT AGC
1 AAT AAT AAT AAT AAT -AAT AAT AAT A-AT AAT AAT AAT A-AT AAT AAT
* * *
61144108 AAC AAC AAT AAT AAT AA- AAG AAT GAACGT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AA--T AAT AAT AAT AAT AAT AAT
61144155 AAT AAT A
1 AAT AAT A
61144162 GCAAACAATA
Statistics
Matches: 107, Mismatches: 20, Indels: 26
0.70 0.13 0.17
Matches are distributed among these distances:
2 9 0.08
3 87 0.81
4 8 0.07
5 2 0.02
6 1 0.01
ACGTcount: A:0.62, C:0.07, G:0.06, T:0.24
Consensus pattern (3 bp):
AAT
Found at i:61145121 original size:12 final size:12
Alignment explanation
Indices: 61145104--61145135 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
61145094 TACTGTTTTG
61145104 CTTTGCTTTCTT
1 CTTTGCTTTCTT
61145116 CTTTGCTTTCTT
1 CTTTGCTTTCTT
61145128 CTTTGCTT
1 CTTTGCTT
61145136 CTGTTTTGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.25, G:0.09, T:0.66
Consensus pattern (12 bp):
CTTTGCTTTCTT
Found at i:61145542 original size:3 final size:3
Alignment explanation
Indices: 61145534--61145572 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
61145524 TTTGAATTTC
*
61145534 ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
61145573 GTTGTTGTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:61146045 original size:23 final size:23
Alignment explanation
Indices: 61146011--61146064 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
61146001 ATTTTAAAAA
61146011 TAAAAC-TTATTTAAGTACAAAT
1 TAAAACATTATTTAAGTACAAAT
**
61146033 TAAAACATTATTTTGGTACAAAT
1 TAAAACATTATTTAAGTACAAAT
61146056 TAAAA-ATTA
1 TAAAACATTA
61146065 AGCATTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 10 0.34
23 19 0.66
ACGTcount: A:0.50, C:0.07, G:0.06, T:0.37
Consensus pattern (23 bp):
TAAAACATTATTTAAGTACAAAT
Found at i:61151698 original size:15 final size:15
Alignment explanation
Indices: 61151678--61151707 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
61151668 CTCTCGACAC
61151678 CATTACCCGGGAATT
1 CATTACCCGGGAATT
*
61151693 CATTACCTGGGAATT
1 CATTACCCGGGAATT
61151708 GAGTCTACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (15 bp):
CATTACCCGGGAATT
Found at i:61159804 original size:218 final size:218
Alignment explanation
Indices: 61159426--61159863 Score: 876
Period size: 218 Copynumber: 2.0 Consensus size: 218
61159416 GTAGTTCTTC
61159426 TAAAAATACCTCAGGAAACTCACAAACAACCGACACTGACTGGATTTTCAACTCTGACACTTTGG
1 TAAAAATACCTCAGGAAACTCACAAACAACCGACACTGACTGGATTTTCAACTCTGACACTTTGG
61159491 TGTCCAGTACAATAGCAAGATAAGCCTCATACCTCTTTTTAATATATCTCTGTGCTGATATTACT
66 TGTCCAGTACAATAGCAAGATAAGCCTCATACCTCTTTTTAATATATCTCTGTGCTGATATTACT
61159556 AAAATTACATTAGACAATCCAACCAGTTTCTCATATTCAACCCGAAGTAACTCACCATTCTGACA
131 AAAATTACATTAGACAATCCAACCAGTTTCTCATATTCAACCCGAAGTAACTCACCATTCTGACA
61159621 CTTCAATACAATGTATTTATGCT
196 CTTCAATACAATGTATTTATGCT
61159644 TAAAAATACCTCAGGAAACTCACAAACAACCGACACTGACTGGATTTTCAACTCTGACACTTTGG
1 TAAAAATACCTCAGGAAACTCACAAACAACCGACACTGACTGGATTTTCAACTCTGACACTTTGG
61159709 TGTCCAGTACAATAGCAAGATAAGCCTCATACCTCTTTTTAATATATCTCTGTGCTGATATTACT
66 TGTCCAGTACAATAGCAAGATAAGCCTCATACCTCTTTTTAATATATCTCTGTGCTGATATTACT
61159774 AAAATTACATTAGACAATCCAACCAGTTTCTCATATTCAACCCGAAGTAACTCACCATTCTGACA
131 AAAATTACATTAGACAATCCAACCAGTTTCTCATATTCAACCCGAAGTAACTCACCATTCTGACA
61159839 CTTCAATACAATGTATTTATGCT
196 CTTCAATACAATGTATTTATGCT
61159862 TA
1 TA
61159864 CAATTTACCA
Statistics
Matches: 220, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
218 220 1.00
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.30
Consensus pattern (218 bp):
TAAAAATACCTCAGGAAACTCACAAACAACCGACACTGACTGGATTTTCAACTCTGACACTTTGG
TGTCCAGTACAATAGCAAGATAAGCCTCATACCTCTTTTTAATATATCTCTGTGCTGATATTACT
AAAATTACATTAGACAATCCAACCAGTTTCTCATATTCAACCCGAAGTAACTCACCATTCTGACA
CTTCAATACAATGTATTTATGCT
Found at i:61164277 original size:21 final size:21
Alignment explanation
Indices: 61164253--61164303 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
61164243 AACTAAGGTG
61164253 AATCCAAAGCCTAAAAGCAAC
1 AATCCAAAGCCTAAAAGCAAC
61164274 AATCCAAAGCCTAAAAGCAAC
1 AATCCAAAGCCTAAAAGCAAC
61164295 AATCCAAAG
1 AATCCAAAG
61164304 GCCAATTACG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.53, C:0.27, G:0.10, T:0.10
Consensus pattern (21 bp):
AATCCAAAGCCTAAAAGCAAC
Found at i:61165054 original size:20 final size:21
Alignment explanation
Indices: 61165009--61165054 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
61164999 AACCCTTGAT
61165009 CTTAAACACATAAATAGAGCA
1 CTTAAACACATAAATAGAGCA
* *
61165030 CTTAACCACATATATAGAG-A
1 CTTAAACACATAAATAGAGCA
61165050 CTTAA
1 CTTAA
61165055 TTATTAACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.48, C:0.20, G:0.09, T:0.24
Consensus pattern (21 bp):
CTTAAACACATAAATAGAGCA
Found at i:61166917 original size:20 final size:20
Alignment explanation
Indices: 61166894--61166934 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
61166884 TAATAATGAG
61166894 AATACCAATTTTATAATAAT
1 AATACCAATTTTATAATAAT
*
61166914 AATATCAATTTTATAATAAT
1 AATACCAATTTTATAATAAT
61166934 A
1 A
61166935 TCGATAATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (20 bp):
AATACCAATTTTATAATAAT
Found at i:61171144 original size:46 final size:47
Alignment explanation
Indices: 61171055--61171278 Score: 189
Period size: 46 Copynumber: 4.8 Consensus size: 47
61171045 GCATATCTAT
* *
61171055 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAACTTACGTCTCGTAG
*
61171101 GCCGATGCATATCCCAGACATGTCTTACACTAACTTACGTCTCG-AG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCGTAG
* * *
61171147 GCCGATGCATGTCCCAGACATGTCTTACGCTAGCAC-T-CGTCTC-AAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTA--ACTTACGTCTCGTAG
* ** **
61171193 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAC-AAT-GT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAACT-T-ACGTCTCGTAG
* *
61171241 GCCGATGCATGCCCCAGACATGTCTTACACTAGCTTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAACTTAC
61171279 AATAGCCAAT
Statistics
Matches: 148, Mismatches: 17, Indels: 28
0.77 0.09 0.15
Matches are distributed among these distances:
44 14 0.09
45 15 0.10
46 71 0.48
47 28 0.19
48 18 0.12
49 1 0.01
50 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAACTTACGTCTCGTAG
Found at i:61171244 original size:94 final size:93
Alignment explanation
Indices: 61171005--61171274 Score: 264
Period size: 94 Copynumber: 2.9 Consensus size: 93
61170995 AGGGTGAGAT
* * * * *
61171005 GCCGATGCCATGTCCCAGATATGGTCTTATACAGGCTCTAGCATATCTATGCCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTA-CA-ATGT-GGCCGATG-CATGTCC
*
61171070 CAGACATGGTCTTACACT-G-ACACATCTCGTA
62 CAGACAT-GTCTTACACTAGCACACATCTCATA
* ** ** *
61171101 GCCGATG-CATATCCCAGACAT-GTCTTACACTAACT-TACGTCTCGAGGCCGATGCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTAC-AAT-GTGGCCGATGCATGTCCCA
* * *
61171163 GACATGTCTTACGCTAGCACTCGTCTCA-A
64 GACATGTCTTACACTAGCACACATCTCATA
* *
61171192 TGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAATGTGGCCGATGCATGCCCCA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACAATGTGGCCGATGCATGTCCCA
61171257 GACATGTCTTACACTAGC
64 GACATGTCTTACACTAGC
61171275 TTACAATAGC
Statistics
Matches: 141, Mismatches: 24, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
90 9 0.06
91 16 0.11
92 22 0.16
93 15 0.11
94 56 0.40
95 14 0.10
96 9 0.06
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (93 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACAATGTGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCACACATCTCATA
Found at i:61174064 original size:18 final size:18
Alignment explanation
Indices: 61174041--61174082 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
61174031 TTCTCGAGTG
*
61174041 ATAGTCAATTATCAGCTC
1 ATAGTCAATTATCAACTC
**
61174059 ATAGTCTTTTATCAACTC
1 ATAGTCAATTATCAACTC
61174077 -TAGTCA
1 ATAGTCA
61174083 CCTTCGTTGC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (18 bp):
ATAGTCAATTATCAACTC
Found at i:61178792 original size:46 final size:44
Alignment explanation
Indices: 61178690--61178898 Score: 145
Period size: 46 Copynumber: 4.5 Consensus size: 44
61178680 ATGCCGATGC
* *
61178690 CATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACACATCTCGTAGCCAATG
*
61178735 CATGTCCCAGACATGTCTTACACTGACTTACGTCTCG-AGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGAC--ACATCTCGTA-GCCAATG
** * * * **
61178781 CATGTTGCAGACATGTCTTACACTAGCACTCGTCTC-AATGCTGATG
1 CATGTCCCAGACATGTCTTACACT-G-ACACATCTCGTA-GCCAATG
* * * * * *
61178827 CCATGTCCCAGACATGGTCTTACACTGGCTC-TCACAATGTGGCCGATA
1 -CATGTCCCAGACAT-GTCTTACACTGACACATCTC---GTAGCCAATG
61178875 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
61178899 AGCTCACAAT
Statistics
Matches: 135, Mismatches: 17, Indels: 23
0.77 0.10 0.13
Matches are distributed among these distances:
44 13 0.10
45 18 0.13
46 59 0.44
47 28 0.21
48 17 0.13
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTCGTAGCCAATG
Found at i:61178879 original size:94 final size:92
Alignment explanation
Indices: 61178690--61178901 Score: 222
Period size: 94 Copynumber: 2.3 Consensus size: 92
61178680 ATGCCGATGC
*
61178690 CATGTCCCAGACATGGTCTTACACT-GACACATC-TCGT-AGT-C-GATGCATGTCCCAGACATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CAC-TCGTC-TCAATGCTGATGCATGTCCCAGACATG
** *
61178750 TCTTACACTGACTTACGTCTCGAGGCCAATG
62 TCTTACACTGACTTACGAATCGAGGCCAATA
**
61178781 CATGTTGCAGACATGTCTTACACTAGCACTCGTCTCAATGCTGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCTGATG-CATGTCCCAGACAT-GTC
* * *
61178846 TTACACTGGCTCTCAC-AAT-GTGGCCGATA
64 TTACACTGACT-T-ACGAATCGAGGCCAATA
61178875 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
61178902 TCACAATAGC
Statistics
Matches: 101, Mismatches: 11, Indels: 15
0.80 0.09 0.12
Matches are distributed among these distances:
89 3 0.03
90 17 0.17
91 14 0.14
92 4 0.04
93 14 0.14
94 45 0.45
95 2 0.02
96 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCTGATGCATGTCCCAGACATGTCTT
ACACTGACTTACGAATCGAGGCCAATA
Found at i:61181666 original size:40 final size:40
Alignment explanation
Indices: 61181583--61181845 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
61181573 TTGAATGCTG
* * * * * *
61181583 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
61181623 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
61181663 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
61181703 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
61181743 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
61181783 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
61181822 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
61181846 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:61181865 original size:79 final size:80
Alignment explanation
Indices: 61181622--61181880 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
61181612 AAGTGAATAT
* * * * * *
61181622 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
61181686 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
61181702 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
61181767 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
61181782 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
61181846 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
61181861 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
61181881 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:61189619 original size:40 final size:40
Alignment explanation
Indices: 61189536--61189798 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
61189526 TTGAATGCTG
* * * * * *
61189536 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
61189576 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
61189616 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
61189656 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
61189696 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
61189736 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
61189775 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
61189799 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:61189818 original size:79 final size:80
Alignment explanation
Indices: 61189575--61189833 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
61189565 AAGTGAATAT
* * * * * *
61189575 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
61189639 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
61189655 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
61189720 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
61189735 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
61189799 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
61189814 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
61189834 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:61195217 original size:131 final size:130
Alignment explanation
Indices: 61194934--61195414 Score: 397
Period size: 131 Copynumber: 3.7 Consensus size: 130
61194924 AGGAAATACG
* * * * * *
61194934 AGTGAAATTTTGAAGGAATCTTCGATTGTTTTGAACAAATGAAAAAGTGCAACCCAGCACGATAG
1 AGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAG
* ** * ** *
61194999 GGCTCGATTCTCA--AATCGCCAAACATCGAACATGGCCTTCGTTTTGAAAGGTTTTTAATAA-A
66 GGCACGATTC-CACGAATTACCAAACATCGCACATCACCTTCG-TTT-AAAGGATTTTAA-AAGA
61195061 CATGA
127 CAT-A
*** * * * * **
61195066 A-TGAAAACCTAAAGGAATATTCAATTCTTTTGAACAAACGAGAAATCACAACCCAGCACGATAG
1 AGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAG
* ** * * *
61195130 GGCATGATTCC-CGAATTATTAAACA-C-CAAGTATTACCTTCGTTTTAAAGGATTTTTAGAAGA
66 GGCACGATTCCACGAATTACCAAACATCGC-A-CATCACCTTCG-TTTAAAGGA-TTTTAAAAGA
* *
61195192 CCTG
127 CATA
* * * *
61195196 AGTGAAATTTTGAAGGGATATTTGATTATTTT-AAGCAATCGAGAAATTGCAACCCAACACGTTA
1 AGTGAAATTTTGAAGGGATATTCGATTATTTTGAA-CAAACGAGAAATTGCAACCCAGCACGATA
* * * *
61195260 GGGCACGATTCCACAAATTGCCAAATATCGCACATCACCTTCGTTTAAGGGATTTTAAAAGACAT
65 GGGCACGATTCCACGAATTACCAAACATCGCACATCACCTTCGTTTAAAGGATTTTAAAAGACAT
61195325 A
130 A
* * *
61195326 AGTGAAATTTTGAAGTGATATTCGATTATTTTGAGCAAAC-ACGAAATTGCAACCTAGCAC-ATT
1 AGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGA-GAAATTGCAACCCAGCACGA-T
* *
61195389 AGGGCACGATTCCGCGAATTGCCAAA
64 AGGGCACGATTCCACGAATTACCAAA
61195415 TATCAAATCT
Statistics
Matches: 275, Mismatches: 60, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
129 1 0.00
130 99 0.36
131 153 0.56
132 19 0.07
133 2 0.01
134 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (130 bp):
AGTGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAG
GGCACGATTCCACGAATTACCAAACATCGCACATCACCTTCGTTTAAAGGATTTTAAAAGACATA
Found at i:61195357 original size:130 final size:132
Alignment explanation
Indices: 61195164--61195418 Score: 363
Period size: 130 Copynumber: 1.9 Consensus size: 132
61195154 ACCAAGTATT
* * * *
61195164 ACCTTCGTTTTAAAGGATTTTTAGAAGACCTGAGTGAAATTTTGAAGGGATATTTGATTATTTTA
1 ACCTTCGTTTTAAAGGATTTTTAAAAGACATAAGTGAAATTTTGAAGGGATATTCGATTATTTTA
* *
61195229 AGCAATCGA-GAAATTGCAACCCAACACGTTAGGGCACGATTCCACAAATTGCCAAATATCGCAC
66 AGCAAAC-ACGAAATTGCAACCCAACACATTAGGGCACGATTCCACAAATTGCCAAATATCGCAC
61195293 ATC
130 ATC
* * *
61195296 ACCTTCG-TTTAAGGGA-TTTTAAAAGACATAAGTGAAATTTTGAAGTGATATTCGATTATTTTG
1 ACCTTCGTTTTAAAGGATTTTTAAAAGACATAAGTGAAATTTTGAAGGGATATTCGATTATTTTA
* * * *
61195359 AGCAAACACGAAATTGCAACCTAGCACATTAGGGCACGATTCCGCGAATTGCCAAATATC
66 AGCAAACACGAAATTGCAACCCAACACATTAGGGCACGATTCCACAAATTGCCAAATATC
61195419 AAATCTGGCC
Statistics
Matches: 109, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
129 1 0.01
130 93 0.85
131 8 0.07
132 7 0.06
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (132 bp):
ACCTTCGTTTTAAAGGATTTTTAAAAGACATAAGTGAAATTTTGAAGGGATATTCGATTATTTTA
AGCAAACACGAAATTGCAACCCAACACATTAGGGCACGATTCCACAAATTGCCAAATATCGCACA
TC
Found at i:61196341 original size:21 final size:20
Alignment explanation
Indices: 61196311--61196350 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
61196301 GATTTAAAAG
*
61196311 ATATATTATAAGAATTATGTA
1 ATATAATATAAGAA-TATGTA
61196332 ATATAATATAAGAATATGT
1 ATATAATATAAGAATATGT
61196351 TTAAAGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (20 bp):
ATATAATATAAGAATATGTA
Found at i:61197575 original size:26 final size:26
Alignment explanation
Indices: 61197546--61197597 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
61197536 AGATCGAAAG
61197546 GGATTCAGGTGAGCGATTTTTTCTTT
1 GGATTCAGGTGAGCGATTTTTTCTTT
*
61197572 GGATTCAGGTGAGCGGTTTTTTCTTT
1 GGATTCAGGTGAGCGATTTTTTCTTT
61197598 CTTTTTAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.12, G:0.29, T:0.46
Consensus pattern (26 bp):
GGATTCAGGTGAGCGATTTTTTCTTT
Found at i:61198176 original size:19 final size:19
Alignment explanation
Indices: 61198139--61198177 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
61198129 GTTTTTACTA
* *
61198139 TTTATTTGTTTTCTTATTT
1 TTTATTTATTTTCTAATTT
*
61198158 TTTATTTATTTTGTAATTT
1 TTTATTTATTTTCTAATTT
61198177 T
1 T
61198178 GCTCTTCTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (19 bp):
TTTATTTATTTTCTAATTT
Found at i:61199600 original size:4 final size:4
Alignment explanation
Indices: 61199591--61199623 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
61199581 AAGGACAAGG
*
61199591 AAAT AAAT AAAT AAAT AAAT ACAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
61199624 TAGAGGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:61199722 original size:3 final size:3
Alignment explanation
Indices: 61199714--61199752 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
61199704 AAAGTACATA
61199714 AAT AAT AAT AAT AAT AAT ATAT AA- AAT AAT -AT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT A
61199753 GTGAGAAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 4 0.12
3 26 0.79
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:61200663 original size:13 final size:12
Alignment explanation
Indices: 61200646--61200696 Score: 50
Period size: 13 Copynumber: 4.1 Consensus size: 12
61200636 TTTTTGAAGT
61200646 TTTTTTTTATTC
1 TTTTTTTTATTC
*
61200658 TATTTTTCTATTGC
1 T-TTTTTTTATT-C
61200672 TTTTTTTT-TTC
1 TTTTTTTTATTC
*
61200683 TTTTGTTTTTTTC
1 TTTT-TTTTATTC
61200696 T
1 T
61200697 CTGTAAAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
11 5 0.15
12 7 0.21
13 19 0.58
14 2 0.06
ACGTcount: A:0.06, C:0.10, G:0.04, T:0.80
Consensus pattern (12 bp):
TTTTTTTTATTC
Done.